BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035510
(88 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3NWY|A Chain A, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|B Chain B, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|C Chain C, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|D Chain D, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|E Chain E, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
pdb|3NWY|F Chain F, Structure And Allosteric Regulation Of The Uridine
Monophosphate Kinase From Mycobacterium Tuberculosis
Length = 281
Score = 64.7 bits (156), Expect = 1e-11, Method: Composition-based stats.
Identities = 34/82 (41%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 2 AEVVLKGTNVDGVYDCHSRDNNAT--FEHISFRELGSRGAIPMDSTALSFCDENSIPVVV 59
A+VVL VDGV+ R N +S RE+ RG D+TA S C +N +P++V
Sbjct: 198 ADVVLMAKAVDGVFAEDPRVNPEAELLTAVSHREVLDRGLRVADATAFSLCMDNGMPILV 257
Query: 60 FNLLEPGNISKAICGDQVGTFI 81
FNLL GNI++A+ G+++GT +
Sbjct: 258 FNLLTDGNIARAVRGEKIGTLV 279
>pdb|2A1F|A Chain A, Crystal Structure Of Uridylate Kinase
pdb|2A1F|B Chain B, Crystal Structure Of Uridylate Kinase
pdb|2A1F|C Chain C, Crystal Structure Of Uridylate Kinase
pdb|2A1F|D Chain D, Crystal Structure Of Uridylate Kinase
pdb|2A1F|E Chain E, Crystal Structure Of Uridylate Kinase
pdb|2A1F|F Chain F, Crystal Structure Of Uridylate Kinase
Length = 247
Score = 58.9 bits (141), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 1 HAEVVLKGTNVDGVYDCHSRDN--NATFEHISFRELGSRGAIPMDSTALSFCDENSIPVV 58
A+VVLK T VDGVYDC N ++++S+ E+ + MD +A + ++ +P+
Sbjct: 156 EADVVLKATKVDGVYDCDPAKNPDAKLYKNLSYAEVIDKELKVMDLSAFTLARDHGMPIR 215
Query: 59 VFNLLEPGNISKAICGDQVGTFI 81
VFN+ +PG + + + G + GT I
Sbjct: 216 VFNMGKPGALRQVVTGTEEGTTI 238
>pdb|2BND|A Chain A, The Structure Of E.Coli Ump Kinase In Complex With Udp
pdb|2BND|B Chain B, The Structure Of E.Coli Ump Kinase In Complex With Udp
Length = 241
Score = 57.0 bits (136), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 1 HAEVVLKGTNVDGVYDCH-SRDNNAT-FEHISFRELGSRGAIPMDSTALSFCDENSIPVV 58
A VVLK T VDGV+ ++D AT +E +++ E+ + MD A + ++ +P+
Sbjct: 157 EANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIR 216
Query: 59 VFNLLEPGNISKAICGDQVGTFI 81
VFN+ +PG + + + G++ GT I
Sbjct: 217 VFNMNKPGALRRVVMGEKEGTLI 239
>pdb|2BNE|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2BNE|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Ump
pdb|2V4Y|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|C Chain C, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|D Chain D, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|E Chain E, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
pdb|2V4Y|F Chain F, The Structure Of E. Coli Ump Kinase In Complex With Its
Allosteric Regulator Gtp
Length = 241
Score = 57.0 bits (136), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 49/83 (59%), Gaps = 2/83 (2%)
Query: 1 HAEVVLKGTNVDGVYDCH-SRDNNAT-FEHISFRELGSRGAIPMDSTALSFCDENSIPVV 58
A VVLK T VDGV+ ++D AT +E +++ E+ + MD A + ++ +P+
Sbjct: 157 EANVVLKATKVDGVFTADPAKDPTATMYEQLTYSEVLEKELKVMDLAAFTLARDHKLPIR 216
Query: 59 VFNLLEPGNISKAICGDQVGTFI 81
VFN+ +PG + + + G++ GT I
Sbjct: 217 VFNMNKPGALRRVVMGEKEGTLI 239
>pdb|1YBD|A Chain A, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|B Chain B, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
pdb|1YBD|C Chain C, Crystal Structure Analysis Of Uridylate Kinase From
Neisseria Meningitidis
Length = 239
Score = 55.5 bits (132), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/81 (37%), Positives = 47/81 (58%), Gaps = 2/81 (2%)
Query: 3 EVVLKGTNVDGVYDCH-SRDNNAT-FEHISFRELGSRGAIPMDSTALSFCDENSIPVVVF 60
+V LK TNVDGVY +D +AT +E I+F E + D+TA + C E + +VVF
Sbjct: 157 DVXLKATNVDGVYTADPKKDPSATRYETITFDEALLKNLKVXDATAFALCRERKLNIVVF 216
Query: 61 NLLEPGNISKAICGDQVGTFI 81
+ + G++ + I G+ GT +
Sbjct: 217 GIAKEGSLKRVITGEDEGTLV 237
>pdb|3EK5|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK5|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|A Chain A, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|B Chain B, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|C Chain C, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|D Chain D, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|E Chain E, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
pdb|3EK6|F Chain F, Unique Gtp-Binding Pocket And Allostery Of Ump Kinase From
A Gram- Negative Phytopathogen Bacterium
Length = 243
Score = 54.7 bits (130), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 50/82 (60%), Gaps = 2/82 (2%)
Query: 2 AEVVLKGTNVDGVYDCHSRDNN--ATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVV 59
A+++LK T VDGVYD + ++ ++ +++ E+ +G MD+ A + ++ +P+ +
Sbjct: 158 ADLLLKATKVDGVYDKDPKKHSDAVRYDSLTYDEVIMQGLEVMDTAAFALARDSDLPLRI 217
Query: 60 FNLLEPGNISKAICGDQVGTFI 81
F + EPG + + + G Q+GT +
Sbjct: 218 FGMSEPGVLLRILHGAQIGTLV 239
>pdb|2VA1|A Chain A, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|B Chain B, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|C Chain C, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|D Chain D, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|E Chain E, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
pdb|2VA1|F Chain F, Crystal Structure Of Ump Kinase From Ureaplasma Parvum
Length = 256
Score = 54.3 bits (129), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 1 HAEVVLKGTN-VDGVYDCHSRDN-NATF-EHISFRELGSRGAIPMDSTALSFCDENSIPV 57
+ ++L G N VDGVYD + N NA F EHI+F ++ MD+TAL+ C EN+I +
Sbjct: 171 ESSIILMGKNGVDGVYDSDPKINPNAQFYEHITFNMALTQNLKVMDATALALCQENNINL 230
Query: 58 VVFNLLEPGNI 68
+VFN+ +P I
Sbjct: 231 LVFNIDKPNAI 241
>pdb|2BNF|A Chain A, The Structure Of E. Coli Ump Kinase In Complex With Utp
pdb|2BNF|B Chain B, The Structure Of E. Coli Ump Kinase In Complex With Utp
Length = 241
Score = 52.4 bits (124), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 47/83 (56%), Gaps = 2/83 (2%)
Query: 1 HAEVVLKGTNVDGVYDCH-SRDNNAT-FEHISFRELGSRGAIPMDSTALSFCDENSIPVV 58
A VVLK T VDGV+ ++D AT +E +++ E+ + D A + ++ +P+
Sbjct: 157 EANVVLKATKVDGVFTADPAKDPTATXYEQLTYSEVLEKELKVXDLAAFTLARDHKLPIR 216
Query: 59 VFNLLEPGNISKAICGDQVGTFI 81
VFN +PG + + + G++ GT I
Sbjct: 217 VFNXNKPGALRRVVXGEKEGTLI 239
>pdb|1Z9D|A Chain A, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|B Chain B, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
pdb|1Z9D|C Chain C, Crystal Structure Of A Putative Uridylate Kinase
(Ump-Kinase) From Streptococcus Pyogenes
Length = 252
Score = 51.6 bits (122), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 3/84 (3%)
Query: 1 HAEVVLKGTN-VDGVYDCH-SRDNNAT-FEHISFRELGSRGAIPMDSTALSFCDENSIPV 57
A+ +L N VDGVY+ +D NA F+ ++ E+ RG D+TA + +N I +
Sbjct: 155 EADAILXAKNGVDGVYNADPKKDANAVKFDELTHGEVIKRGLKIXDATASTLSXDNDIDL 214
Query: 58 VVFNLLEPGNISKAICGDQVGTFI 81
VVFN E GNI + + G+ +GT +
Sbjct: 215 VVFNXNEAGNIQRVVFGEHIGTTV 238
>pdb|4A7W|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7W|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|A Chain A, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|B Chain B, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|C Chain C, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|D Chain D, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|E Chain E, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
pdb|4A7X|F Chain F, Crystal Structure Of Uridylate Kinase From Helicobacter
Pylori
Length = 240
Score = 45.1 bits (105), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 44/84 (52%), Gaps = 9/84 (10%)
Query: 2 AEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGSRGAI-----PMDSTALSFCDENSIP 56
+++++K T VDG+YD +D N + L A+ MD TA+S +N +P
Sbjct: 157 SDLIIKATKVDGIYD---KDPNKFKDAKKLDTLSYNDALIGDIEVMDDTAISLAKDNKLP 213
Query: 57 VVVFNLLEPGNISKAICGDQVGTF 80
+VV N+ + GN+ + I Q G F
Sbjct: 214 IVVCNMFKKGNLLQVIKHQQ-GVF 236
>pdb|2JJX|A Chain A, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|B Chain B, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
pdb|2JJX|C Chain C, The Crystal Structure Of Ump Kinase From Bacillus
Anthracis (Ba1797)
Length = 255
Score = 41.2 bits (95), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 4 VVLKGTNVDGVYDCHSRDNNAT--FEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFN 61
+++ VDGV+ + N + + +++ ++ + MD AL + ++P VFN
Sbjct: 165 ILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFN 224
Query: 62 LLEPGNISKAICGDQVGTFID 82
EPG + + G+ VGT I+
Sbjct: 225 FDEPGVMRRICLGEHVGTLIN 245
>pdb|2IJ9|A Chain A, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
pdb|2IJ9|B Chain B, Crystal Structure Of Uridylate Kinase From Archaeoglobus
Fulgidus
Length = 219
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 44/92 (47%), Gaps = 12/92 (13%)
Query: 1 HAEVVLKGTNVDGVY--DCHSRDNNATFEHIS---FRELGSRGA------IPMDSTALSF 49
A+V + TNVDGVY D S + ++ +S E+ SR + + +D A
Sbjct: 128 KADVFINATNVDGVYSADPKSDTSAVKYDRLSPQQLVEIVSRSSAKAGTNVVIDLLAAKI 187
Query: 50 CDENSIPVVVFNLLEPGNISKAICGDQVGTFI 81
+ + I V L P NI KA+ G+ VGT I
Sbjct: 188 IERSKIKTYVI-LGTPENIMKAVKGEAVGTVI 218
>pdb|4F6T|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 268
Score = 33.1 bits (74), Expect = 0.041, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 41/79 (51%), Gaps = 12/79 (15%)
Query: 12 DGVYDCHSR-DNNATF-EHISFRELGSRGAIPMDSTALSF-------CDENSIPVVVFNL 62
DG+Y + + +ATF IS E+ ++G + + L F ++ V V N
Sbjct: 190 DGLYTANPKTSKDATFIPRISVDEMKAKG---LHDSILEFPVLDLLQSAQHVREVQVVNG 246
Query: 63 LEPGNISKAICGDQVGTFI 81
L PGN+++A+ G+ VGT I
Sbjct: 247 LVPGNLTRALAGEHVGTII 265
>pdb|4F6T|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
(Mosto) From Azotobacter Vinelandii Loaded With Various
Polyoxometalates
Length = 244
Score = 32.3 bits (72), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 10 NVDGVYDCHS----RDNNATFEHISFRELG-SRGAIPMDSTALS-FCDENSIP-VVVFNL 62
NVDG+Y R S +L S G +P+D L I V V N
Sbjct: 159 NVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVMATARHIERVQVVNG 218
Query: 63 LEPGNISKAICGDQVGTFIDRTG 85
L PG ++ A+ G+ VGT I RTG
Sbjct: 219 LVPGRLTAALRGEHVGTLI-RTG 240
>pdb|2OGX|B Chain B, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 270
Score = 32.0 bits (71), Expect = 0.100, Method: Composition-based stats.
Identities = 25/79 (31%), Positives = 40/79 (50%), Gaps = 12/79 (15%)
Query: 12 DGVYDCHSR-DNNATF-EHISFRELGSRGAIPMDSTALSF-------CDENSIPVVVFNL 62
DG+Y + + +ATF IS E ++G + + L F ++ V V N
Sbjct: 192 DGLYTANPKTSKDATFIPRISVDEXKAKG---LHDSILEFPVLDLLQSAQHVREVQVVNG 248
Query: 63 LEPGNISKAICGDQVGTFI 81
L PGN+++A+ G+ VGT I
Sbjct: 249 LVPGNLTRALAGEHVGTII 267
>pdb|2OGX|A Chain A, The Crystal Structure Of The Molybdenum Storage Protein
From Azotobacter Vinelandii Loaded With
Polyoxotungstates (Wsto)
Length = 276
Score = 30.8 bits (68), Expect = 0.18, Method: Composition-based stats.
Identities = 28/83 (33%), Positives = 37/83 (44%), Gaps = 8/83 (9%)
Query: 10 NVDGVYDCH----SRDNNATFEHISFRELG-SRGAIPMDSTALSF--CDENSIPVVVFNL 62
NVDG+Y R S +L S G +P+D L + V V N
Sbjct: 191 NVDGIYTADPNGPDRGQARFLPETSATDLAKSEGPLPVDRALLDVXATARHIERVQVVNG 250
Query: 63 LEPGNISKAICGDQVGTFIDRTG 85
L PG ++ A+ G+ VGT I RTG
Sbjct: 251 LVPGRLTAALRGEHVGTLI-RTG 272
>pdb|3D3J|A Chain A, Crystal Structure Of Human Edc3p
Length = 306
Score = 29.3 bits (64), Expect = 0.54, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
Query: 21 DNNATFEHISF--RELGSRG-AIPMDSTALSFCDEN---SIPVVVFNLLEPGNISKAICG 74
D A FE I R G+R IP + DEN S P+V ++ P N+SK C
Sbjct: 12 DKAAVFEEIDTYERRSGTRSRGIPNERPTRYRHDENILESEPIVYRRIIVPHNVSKEFCT 71
Query: 75 D 75
D
Sbjct: 72 D 72
>pdb|2J4J|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4J|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump And Amppcp To 2.1
Angstrom Resolution
pdb|2J4K|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4K|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Ump To 2.2 Angstrom
Resolution
pdb|2J4L|A Chain A, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|B Chain B, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|C Chain C, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|D Chain D, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|E Chain E, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|F Chain F, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|G Chain G, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|H Chain H, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|I Chain I, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|J Chain J, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|K Chain K, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
pdb|2J4L|L Chain L, Crystal Structure Of Uridylate Kinase From Sulfolobus
Solfataricus In Complex With Utp To 2.8 Angstrom
Resolution
Length = 226
Score = 28.9 bits (63), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/93 (23%), Positives = 44/93 (47%), Gaps = 12/93 (12%)
Query: 2 AEVVLKGTNVDGVYDCHSR--DNNATFEHISFREL-----GSRGAIP-----MDSTALSF 49
++ ++ TNVDGVY+ R + H++ ++L GS+ +D A+
Sbjct: 132 SKTLVVATNVDGVYEKDPRIYADVKLIPHLTTQDLRKILEGSQSVQAGTYELLDPLAIKI 191
Query: 50 CDENSIPVVVFNLLEPGNISKAICGDQVGTFID 82
+ + I V+V N + I + G++V + I+
Sbjct: 192 VERSKIRVIVMNYRKLNRIIDILKGEEVSSIIE 224
>pdb|3LL9|A Chain A, X-Ray Structures Of Isopentenyl Phosphate Kinase
pdb|3LL9|B Chain B, X-Ray Structures Of Isopentenyl Phosphate Kinase
Length = 269
Score = 28.9 bits (63), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 44/92 (47%), Gaps = 13/92 (14%)
Query: 3 EVVLKGTNVDGVYDCHSRDN-NATFEHI--SFRELGSR-GAIPMDSTA--------LSFC 50
E V+ GT+VDGVY + + + +A + S +L S G + D T L
Sbjct: 174 ERVILGTDVDGVYTRNPKKHPDARLLDVIGSLDDLESLDGTLNTDVTGGXVGKIRELLLL 233
Query: 51 DENSIPVVVFNLLEPGNISKAICGDQV-GTFI 81
E + + N PGNI +A+ G++V GT I
Sbjct: 234 AEKGVESEIINAAVPGNIERALLGEEVRGTRI 265
>pdb|2QKW|B Chain B, Structural Basis For Activation Of Plant Immunity By
Bacterial Effector Protein Avrpto
Length = 321
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 41 PMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVGT 79
P + + FCDE + ++++ +E GN+ + + G + T
Sbjct: 95 PHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT 133
>pdb|3HGK|A Chain A, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|B Chain B, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|C Chain C, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
pdb|3HGK|D Chain D, Crystal Structure Of Effect Protein Avrptob Complexed With
Kinase Pto
Length = 327
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 10/39 (25%), Positives = 22/39 (56%)
Query: 41 PMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVGT 79
P + + FCDE + ++++ +E GN+ + + G + T
Sbjct: 95 PHLVSLIGFCDERNEMILIYKYMENGNLKRHLYGSDLPT 133
>pdb|2BHS|A Chain A, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|B Chain B, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|C Chain C, Crystal Structure Of Cysteine Synthase B
pdb|2BHS|D Chain D, Crystal Structure Of Cysteine Synthase B
Length = 303
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 5 VLKGTNVDGVYDCHSRDNNATFEHISFRE-----LGSRGAIPMDSTALSFCDENSIPVVV 59
+ + VD V D H RD T ++ RE + S GA+ + AL N VVV
Sbjct: 220 IFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAV---AGALRVAKANPDAVVV 276
Query: 60 FNLLEPGN--ISKAICGDQ 76
+ + G+ +S + G++
Sbjct: 277 AIICDRGDRYLSTGVFGEE 295
>pdb|2BHT|A Chain A, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|B Chain B, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|C Chain C, Crystal Structure Of O-Acetylserine Sulfhydrylase B
pdb|2BHT|D Chain D, Crystal Structure Of O-Acetylserine Sulfhydrylase B
Length = 303
Score = 26.2 bits (56), Expect = 4.3, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 5 VLKGTNVDGVYDCHSRDNNATFEHISFRE-----LGSRGAIPMDSTALSFCDENSIPVVV 59
+ + VD V D H RD T ++ RE + S GA+ + AL N VVV
Sbjct: 220 IFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAV---AGALRVAKANPDAVVV 276
Query: 60 FNLLEPGN--ISKAICGDQ 76
+ + G+ +S + G++
Sbjct: 277 AIICDRGDRYLSTGVFGEE 295
>pdb|2V03|A Chain A, High Resolution Structure And Catalysis Of An O-
Acetylserine Sulfhydrylase
Length = 303
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 10/79 (12%)
Query: 5 VLKGTNVDGVYDCHSRDNNATFEHISFRE-----LGSRGAIPMDSTALSFCDENSIPVVV 59
+ + VD V D H RD T ++ RE + S GA+ + AL N VVV
Sbjct: 220 IFNASLVDEVLDIHQRDAENTMRELAVREGIFCGVSSGGAV---AGALRVAAANPDAVVV 276
Query: 60 FNLLEPGN--ISKAICGDQ 76
+ + G+ +S + G++
Sbjct: 277 AIICDRGDRYLSTGVFGEE 295
>pdb|3K4O|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4O|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From
Methanocaldococcus Jannaschii
pdb|3K4Y|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K4Y|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp
pdb|3K52|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K52|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ip
pdb|3K56|A Chain A, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
pdb|3K56|B Chain B, Crystal Structure Of Isopentenyl Phosphate Kinase From M.
Jannaschii In Complex With Ipp Beta-S
Length = 266
Score = 25.8 bits (55), Expect = 6.4, Method: Composition-based stats.
Identities = 25/90 (27%), Positives = 41/90 (45%), Gaps = 13/90 (14%)
Query: 2 AEVVLKGTNVDGVY----DCHSRDNNATFEHISFRELGSRGAIPMDSTA-----LSFCDE 52
A+++L T+VDGV D N ++ +++ G+ +D T + +
Sbjct: 178 ADLILYATDVDGVLIDNKPIKRIDKNNIYKILNYLS----GSNSIDVTGGMKYKIEMIRK 233
Query: 53 NSIPVVVFNLLEPGNISKAICGDQVGTFID 82
N VFN + NI KA+ G+ GT ID
Sbjct: 234 NKCRGFVFNGNKANNIYKALLGEVEGTEID 263
>pdb|3C1N|C Chain C, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C20|A Chain A, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C20|B Chain B, Crystal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With L-Aspartate
pdb|3C1M|A Chain A, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|B Chain B, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|C Chain C, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1M|D Chain D, Cyrstal Structure Of Threonine-Sensitive Aspartokinase
From Methanococcus Jannaschii With Mgamp-Pnp And
L-Aspartate
pdb|3C1N|A Chain A, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|B Chain B, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
pdb|3C1N|D Chain D, Crystal Structure Of Allosteric Inhibition
Threonine-Sensitive Aspartokinase From Methanococcus
Jannaschii With L-Threonine
Length = 473
Score = 25.4 bits (54), Expect = 8.2, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 2 AEVVLKGTNVDGVYDCHSR-----DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIP 56
A+++ T+V GVY R +I EL GA + + E IP
Sbjct: 223 ADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIP 282
Query: 57 VVVFNLLEPGNISKAICGD 75
++V N EP + I D
Sbjct: 283 ILVKNTFEPESEGTLITND 301
>pdb|2HMF|A Chain A, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|B Chain B, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|C Chain C, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
pdb|2HMF|D Chain D, Structure Of A Threonine Sensitive Aspartokinase From
Methanococcus Jannaschii Complexed With Mg-Adp And
Aspartate
Length = 469
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 21/79 (26%), Positives = 31/79 (39%), Gaps = 5/79 (6%)
Query: 2 AEVVLKGTNVDGVYDCHSR-----DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIP 56
A+++ T+V GVY R +I EL GA + + E IP
Sbjct: 222 ADIIEIWTDVSGVYTTDPRLVPTARRIPKLSYIEAMELAYFGAKVLHPRTIEPAMEKGIP 281
Query: 57 VVVFNLLEPGNISKAICGD 75
++V N EP + I D
Sbjct: 282 ILVKNTFEPESEGTLITND 300
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,607,563
Number of Sequences: 62578
Number of extensions: 90991
Number of successful extensions: 236
Number of sequences better than 100.0: 29
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 210
Number of HSP's gapped (non-prelim): 29
length of query: 88
length of database: 14,973,337
effective HSP length: 56
effective length of query: 32
effective length of database: 11,468,969
effective search space: 367007008
effective search space used: 367007008
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)