Query 035510
Match_columns 88
No_of_seqs 133 out of 1153
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 03:33:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035510.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035510hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0528 PyrH Uridylate kinase 99.9 2.5E-25 5.4E-30 153.8 9.0 83 1-83 153-238 (238)
2 PRK14558 pyrH uridylate kinase 99.9 5.3E-24 1.1E-28 146.8 9.9 83 1-83 146-230 (231)
3 PRK14556 pyrH uridylate kinase 99.9 8.9E-24 1.9E-28 147.8 8.4 82 1-82 164-247 (249)
4 PRK00358 pyrH uridylate kinase 99.9 2.2E-23 4.8E-28 143.4 9.4 82 1-82 148-231 (231)
5 PRK14557 pyrH uridylate kinase 99.9 1.7E-23 3.8E-28 146.2 9.0 85 1-85 153-240 (247)
6 cd04254 AAK_UMPK-PyrH-Ec UMP k 99.9 1.6E-22 3.6E-27 139.5 9.2 82 1-82 148-231 (231)
7 TIGR02075 pyrH_bact uridylate 99.9 3.3E-22 7.2E-27 138.2 8.6 82 1-82 149-233 (233)
8 cd04239 AAK_UMPK-like AAK_UMPK 99.9 1.5E-21 3.3E-26 134.3 9.0 82 1-82 146-229 (229)
9 cd04253 AAK_UMPK-PyrH-Pf AAK_U 99.9 2.2E-21 4.8E-26 133.0 9.7 82 1-82 129-221 (221)
10 COG0263 ProB Glutamate 5-kinas 99.9 1.9E-21 4.1E-26 140.9 8.9 85 1-85 163-261 (369)
11 TIGR02076 pyrH_arch uridylate 99.8 1E-20 2.2E-25 129.5 9.5 82 1-82 129-221 (221)
12 PRK12314 gamma-glutamyl kinase 99.8 1.8E-20 3.9E-25 132.0 9.4 84 1-84 168-265 (266)
13 PRK13402 gamma-glutamyl kinase 99.8 4E-20 8.8E-25 135.4 9.8 84 1-84 161-258 (368)
14 cd04242 AAK_G5K_ProB AAK_G5K_P 99.8 7E-20 1.5E-24 127.7 9.4 82 1-82 156-251 (251)
15 cd04256 AAK_P5CS_ProBA AAK_P5C 99.8 8.3E-20 1.8E-24 129.8 9.3 82 1-82 192-284 (284)
16 TIGR01027 proB glutamate 5-kin 99.8 2.3E-19 5E-24 131.1 9.5 84 1-84 157-254 (363)
17 PRK05429 gamma-glutamyl kinase 99.8 2.7E-19 5.9E-24 131.0 9.6 84 1-84 165-262 (372)
18 PTZ00489 glutamate 5-kinase; P 99.8 3.7E-19 8E-24 125.5 9.7 84 1-84 161-260 (264)
19 cd02115 AAK Amino Acid Kinases 99.8 1.5E-18 3.2E-23 119.4 7.5 80 1-81 164-248 (248)
20 cd04245 AAK_AKiii-YclM-BS AAK_ 99.8 3.8E-18 8.2E-23 121.6 8.5 73 1-82 211-288 (288)
21 cd04234 AAK_AK AAK_AK: Amino A 99.7 7.9E-18 1.7E-22 115.9 8.2 73 1-82 150-227 (227)
22 COG0527 LysC Aspartokinases [A 99.7 8.3E-18 1.8E-22 125.8 8.6 75 1-84 211-290 (447)
23 cd04246 AAK_AK-DapG-like AAK_A 99.7 8.6E-18 1.9E-22 116.2 7.9 72 1-82 163-239 (239)
24 cd04255 AAK_UMPK-MosAB AAK_UMP 99.7 2.1E-17 4.6E-22 116.4 9.5 82 1-82 175-262 (262)
25 cd04261 AAK_AKii-LysC-BS AAK_A 99.7 1.4E-17 2.9E-22 115.3 7.7 72 1-82 163-239 (239)
26 cd04257 AAK_AK-HSDH AAK_AK-HSD 99.7 1.7E-17 3.6E-22 118.5 8.4 73 1-82 217-294 (294)
27 cd04241 AAK_FomA-like AAK_FomA 99.7 1.4E-17 3.1E-22 115.7 7.4 80 1-81 161-252 (252)
28 TIGR01092 P5CS delta l-pyrroli 99.7 1.4E-17 3.1E-22 130.1 8.2 87 1-87 181-279 (715)
29 cd04259 AAK_AK-DapDC AAK_AK-Da 99.7 2.1E-17 4.6E-22 118.1 8.4 73 1-82 218-295 (295)
30 cd04243 AAK_AK-HSDH-like AAK_A 99.7 2E-17 4.3E-22 118.1 8.2 73 1-82 216-293 (293)
31 cd04247 AAK_AK-Hom3 AAK_AK-Hom 99.7 2.6E-17 5.7E-22 118.1 8.6 74 1-83 227-305 (306)
32 COG1608 Predicted archaeal kin 99.7 2.1E-17 4.6E-22 114.8 7.0 82 1-83 161-252 (252)
33 cd04244 AAK_AK-LysC-like AAK_A 99.7 3.9E-17 8.4E-22 116.8 8.2 73 1-82 221-298 (298)
34 PLN02418 delta-1-pyrroline-5-c 99.7 4E-17 8.8E-22 127.6 8.7 87 1-87 189-287 (718)
35 PRK09034 aspartate kinase; Rev 99.7 7.5E-17 1.6E-21 120.6 8.8 75 1-84 211-290 (454)
36 PRK08841 aspartate kinase; Val 99.7 8.1E-17 1.7E-21 118.8 8.5 73 1-83 165-242 (392)
37 cd04258 AAK_AKiii-LysC-EC AAK_ 99.7 1.1E-16 2.3E-21 114.4 8.4 73 1-82 215-292 (292)
38 PRK05925 aspartate kinase; Pro 99.7 1.2E-16 2.6E-21 119.4 9.0 75 1-84 202-281 (440)
39 TIGR00656 asp_kin_monofn aspar 99.7 1.9E-16 4.1E-21 116.2 8.5 73 1-83 166-243 (401)
40 PRK09084 aspartate kinase III; 99.7 2.8E-16 6E-21 117.4 9.0 75 1-84 211-290 (448)
41 cd04260 AAK_AKi-DapG-BS AAK_AK 99.7 1.9E-16 4.2E-21 110.1 7.7 72 1-82 168-244 (244)
42 PRK06291 aspartate kinase; Pro 99.7 2.8E-16 6E-21 117.8 8.9 75 1-84 225-304 (465)
43 PLN02551 aspartokinase 99.7 3E-16 6.4E-21 119.2 9.0 75 1-84 270-349 (521)
44 KOG1154 Gamma-glutamyl kinase 99.7 1.3E-16 2.8E-21 111.0 5.2 85 1-85 181-277 (285)
45 cd04240 AAK_UC AAK_UC: Unchara 99.7 2.4E-16 5.1E-21 107.4 6.4 75 1-81 128-203 (203)
46 PRK09436 thrA bifunctional asp 99.7 5.4E-16 1.2E-20 122.7 9.2 75 1-84 219-298 (819)
47 PRK08210 aspartate kinase I; R 99.7 4.7E-16 1E-20 114.4 8.0 74 1-84 170-248 (403)
48 TIGR02078 AspKin_pair Pyrococc 99.6 7E-16 1.5E-20 111.7 8.4 73 1-83 193-270 (327)
49 PRK07431 aspartate kinase; Pro 99.6 7.3E-16 1.6E-20 118.0 8.9 74 1-84 167-245 (587)
50 TIGR00657 asp_kinases aspartat 99.6 8.6E-16 1.9E-20 114.2 8.9 75 1-84 205-284 (441)
51 COG2054 Uncharacterized archae 99.6 1.1E-15 2.4E-20 102.8 6.1 80 1-83 130-210 (212)
52 PRK09466 metL bifunctional asp 99.6 2.4E-15 5.1E-20 119.0 8.5 74 1-83 222-300 (810)
53 PRK06635 aspartate kinase; Rev 99.6 3.5E-15 7.6E-20 109.6 8.3 73 1-83 165-242 (404)
54 PRK12353 putative amino acid k 99.6 3.2E-15 6.8E-20 107.7 7.8 79 1-83 226-314 (314)
55 PRK14058 acetylglutamate/acety 99.6 4.5E-15 9.8E-20 104.5 8.1 80 1-83 182-267 (268)
56 PRK08373 aspartate kinase; Val 99.6 5.1E-15 1.1E-19 107.7 8.2 73 1-84 203-280 (341)
57 PRK08961 bifunctional aspartat 99.6 7.4E-15 1.6E-19 116.6 8.6 75 1-84 227-306 (861)
58 TIGR00746 arcC carbamate kinas 99.5 2.2E-14 4.7E-19 103.3 7.8 78 1-82 223-309 (310)
59 PRK09181 aspartate kinase; Val 99.5 2.6E-14 5.7E-19 107.7 8.1 74 1-84 232-312 (475)
60 cd04250 AAK_NAGK-C AAK_NAGK-C: 99.5 4.3E-14 9.2E-19 99.9 7.4 80 1-81 191-279 (279)
61 cd04235 AAK_CK AAK_CK: Carbama 99.5 1.1E-13 2.3E-18 99.6 8.4 78 1-82 222-308 (308)
62 cd04248 AAK_AK-Ectoine AAK_AK- 99.5 7.9E-14 1.7E-18 100.1 7.7 72 1-82 226-304 (304)
63 PRK00942 acetylglutamate kinas 99.5 2.3E-13 4.9E-18 96.3 8.1 80 1-84 195-283 (283)
64 PRK12686 carbamate kinase; Rev 99.4 3.4E-13 7.4E-18 97.2 7.7 77 1-82 224-311 (312)
65 PF00696 AA_kinase: Amino acid 99.4 2.4E-13 5.2E-18 93.2 6.0 61 1-61 171-242 (242)
66 PLN02512 acetylglutamate kinas 99.4 7.9E-13 1.7E-17 95.0 8.5 82 1-83 219-309 (309)
67 cd04238 AAK_NAGK-like AAK_NAGK 99.4 4.6E-13 1E-17 93.4 6.7 77 1-81 171-256 (256)
68 cd04249 AAK_NAGK-NC AAK_NAGK-N 99.4 6E-13 1.3E-17 92.8 7.0 76 1-81 169-252 (252)
69 PRK12354 carbamate kinase; Rev 99.4 1.5E-12 3.2E-17 93.7 8.5 81 1-85 217-302 (307)
70 PRK12454 carbamate kinase-like 99.4 1.9E-12 4E-17 93.4 8.4 78 1-83 226-313 (313)
71 CHL00202 argB acetylglutamate 99.4 4.4E-12 9.6E-17 90.1 8.5 81 1-82 194-283 (284)
72 PRK09411 carbamate kinase; Rev 99.3 9.5E-12 2.1E-16 89.1 7.5 78 1-82 214-296 (297)
73 cd04251 AAK_NAGK-UC AAK_NAGK-U 99.3 1.4E-11 3E-16 86.4 6.3 74 1-81 178-257 (257)
74 PRK12352 putative carbamate ki 99.3 2.3E-11 4.9E-16 87.9 7.6 79 1-83 228-315 (316)
75 KOG0456 Aspartate kinase [Amin 99.1 2.6E-11 5.6E-16 89.9 2.3 79 1-88 297-380 (559)
76 COG0548 ArgB Acetylglutamate k 99.1 8.9E-10 1.9E-14 78.0 8.9 81 1-83 176-265 (265)
77 PRK05279 N-acetylglutamate syn 99.0 1.5E-09 3.3E-14 80.8 7.1 80 1-84 201-292 (441)
78 cd04237 AAK_NAGS-ABP AAK_NAGS- 99.0 2.1E-09 4.6E-14 76.3 7.2 77 1-81 194-280 (280)
79 TIGR01890 N-Ac-Glu-synth amino 98.8 1.3E-08 2.9E-13 75.7 7.4 81 1-85 193-281 (429)
80 TIGR00761 argB acetylglutamate 98.7 4.8E-08 1E-12 67.2 6.0 55 1-58 168-229 (231)
81 COG0549 ArcC Carbamate kinase 98.7 8.3E-08 1.8E-12 68.7 6.5 79 1-83 225-312 (312)
82 cd04252 AAK_NAGK-fArgBP AAK_NA 98.4 9.1E-07 2E-11 61.8 6.5 74 1-81 163-248 (248)
83 PRK04531 acetylglutamate kinas 98.4 3.2E-06 7E-11 62.9 8.5 83 1-87 162-253 (398)
84 cd04236 AAK_NAGS-Urea AAK_NAGS 98.1 6.4E-06 1.4E-10 58.7 5.6 74 1-81 186-271 (271)
85 COG1778 Low specificity phosph 96.1 0.012 2.7E-07 39.2 4.3 60 7-73 11-70 (170)
86 TIGR02726 phenyl_P_delta pheny 95.5 0.061 1.3E-06 35.7 5.9 60 7-73 10-69 (169)
87 PLN02825 amino-acid N-acetyltr 95.5 0.063 1.4E-06 41.6 6.7 40 45-84 324-365 (515)
88 TIGR01670 YrbI-phosphatas 3-de 90.6 1.3 2.8E-05 28.5 5.8 24 6-29 3-29 (154)
89 PRK09484 3-deoxy-D-manno-octul 87.3 1.1 2.4E-05 29.6 3.9 13 6-18 23-35 (183)
90 PRK10187 trehalose-6-phosphate 71.9 10 0.00022 26.6 4.6 57 4-73 14-72 (266)
91 PRK14501 putative bifunctional 66.2 22 0.00047 28.6 5.8 59 2-73 490-550 (726)
92 PF10087 DUF2325: Uncharacteri 65.0 9.5 0.00021 22.6 2.9 30 44-73 65-94 (97)
93 PRK00994 F420-dependent methyl 60.3 25 0.00054 25.3 4.7 44 44-87 77-120 (277)
94 PRK03669 mannosyl-3-phosphogly 59.8 22 0.00048 24.6 4.4 54 3-73 6-59 (271)
95 PF03437 BtpA: BtpA family; I 59.2 11 0.00024 26.8 2.8 34 53-86 199-235 (254)
96 PRK15126 thiamin pyrimidine py 58.0 20 0.00043 24.7 3.9 30 44-73 25-54 (272)
97 TIGR02463 MPGP_rel mannosyl-3- 57.2 14 0.0003 24.6 2.9 29 45-73 23-51 (221)
98 PRK10976 putative hydrolase; P 56.7 27 0.00059 23.8 4.4 30 44-73 25-54 (266)
99 PRK10530 pyridoxal phosphate ( 56.2 23 0.00049 24.1 3.9 30 44-73 26-55 (272)
100 TIGR01486 HAD-SF-IIB-MPGP mann 56.2 22 0.00047 24.4 3.8 30 44-73 22-51 (256)
101 COG4026 Uncharacterized protei 55.1 8.3 0.00018 27.4 1.6 14 1-14 57-70 (290)
102 COG0434 SgcQ Predicted TIM-bar 54.8 27 0.00058 25.1 4.1 44 42-85 192-239 (263)
103 COG0561 Cof Predicted hydrolas 53.8 26 0.00055 24.0 3.9 30 45-74 27-56 (264)
104 PF04122 CW_binding_2: Putativ 52.9 44 0.00094 19.3 4.5 38 38-75 33-71 (92)
105 PRK09932 glycerate kinase II; 50.6 57 0.0012 24.7 5.5 24 47-70 309-332 (381)
106 COG1709 Predicted transcriptio 50.6 74 0.0016 22.6 5.7 32 41-73 207-238 (241)
107 PRK10513 sugar phosphate phosp 48.0 36 0.00079 23.2 3.9 30 44-73 26-55 (270)
108 TIGR00045 glycerate kinase. Th 46.7 61 0.0013 24.4 5.1 22 47-68 308-329 (375)
109 PF01993 MTD: methylene-5,6,7, 46.5 37 0.0008 24.5 3.7 43 45-87 77-119 (276)
110 PTZ00174 phosphomannomutase; P 46.3 30 0.00065 23.7 3.3 30 44-73 28-57 (247)
111 TIGR00620 sporelyase spore pho 45.9 90 0.002 21.5 5.5 55 5-59 30-89 (199)
112 PF08282 Hydrolase_3: haloacid 45.5 32 0.0007 22.4 3.3 30 44-73 21-50 (254)
113 TIGR01487 SPP-like sucrose-pho 44.6 44 0.00096 22.1 3.8 29 44-72 24-52 (215)
114 TIGR02461 osmo_MPG_phos mannos 44.2 44 0.00095 22.7 3.8 28 45-72 22-49 (225)
115 TIGR00099 Cof-subfamily Cof su 43.7 49 0.0011 22.5 4.0 29 45-73 23-51 (256)
116 TIGR01482 SPP-subfamily Sucros 43.7 51 0.0011 21.7 4.0 27 46-72 23-49 (225)
117 PRK10886 DnaA initiator-associ 43.6 38 0.00083 22.9 3.4 29 44-72 126-154 (196)
118 COG1927 Mtd Coenzyme F420-depe 43.2 71 0.0015 22.7 4.7 44 44-87 77-120 (277)
119 cd01080 NAD_bind_m-THF_DH_Cycl 43.1 69 0.0015 21.1 4.5 36 38-74 51-87 (168)
120 PRK10342 glycerate kinase I; P 41.5 94 0.002 23.5 5.4 22 47-68 309-330 (381)
121 cd05014 SIS_Kpsf KpsF-like pro 41.3 52 0.0011 19.7 3.5 28 44-71 64-91 (128)
122 PRK01158 phosphoglycolate phos 40.8 41 0.00089 22.3 3.2 28 45-72 27-54 (230)
123 cd01427 HAD_like Haloacid deha 40.6 44 0.00095 19.3 3.0 29 45-73 31-59 (139)
124 cd05008 SIS_GlmS_GlmD_1 SIS (S 40.1 68 0.0015 19.1 3.9 28 44-71 63-90 (126)
125 TIGR00259 thylakoid_BtpA membr 40.0 34 0.00074 24.4 2.8 44 42-85 186-234 (257)
126 cd05710 SIS_1 A subgroup of th 39.1 68 0.0015 19.5 3.8 27 44-70 64-90 (120)
127 cd05013 SIS_RpiR RpiR-like pro 38.3 67 0.0014 19.1 3.7 27 44-70 77-103 (139)
128 PF01949 DUF99: Protein of unk 36.8 27 0.00058 23.7 1.8 35 38-74 77-113 (187)
129 PF00752 XPG_N: XPG N-terminal 34.7 36 0.00079 20.0 2.0 17 49-65 67-84 (101)
130 cd01455 vWA_F11C1-5a_type Von 34.6 1.3E+02 0.0028 20.6 4.8 45 39-83 125-172 (191)
131 TIGR01484 HAD-SF-IIB HAD-super 32.9 96 0.0021 20.1 4.0 28 46-73 25-52 (204)
132 PRK00414 gmhA phosphoheptose i 32.8 89 0.0019 20.8 3.8 28 44-71 128-155 (192)
133 PRK13938 phosphoheptose isomer 32.8 82 0.0018 21.3 3.7 28 44-71 130-157 (196)
134 PRK12702 mannosyl-3-phosphogly 32.6 89 0.0019 22.9 4.0 29 45-73 25-53 (302)
135 TIGR01656 Histidinol-ppas hist 31.6 98 0.0021 19.3 3.7 49 7-63 3-52 (147)
136 TIGR03127 RuMP_HxlB 6-phospho 31.2 1E+02 0.0022 19.9 3.8 28 44-71 89-116 (179)
137 cd05006 SIS_GmhA Phosphoheptos 31.2 87 0.0019 20.2 3.5 28 44-71 118-145 (177)
138 PRK13937 phosphoheptose isomer 31.1 98 0.0021 20.4 3.8 28 44-71 123-150 (188)
139 PRK00192 mannosyl-3-phosphogly 31.0 67 0.0014 22.2 3.1 27 46-72 29-55 (273)
140 TIGR00441 gmhA phosphoheptose 30.9 88 0.0019 19.9 3.4 27 44-70 96-122 (154)
141 cd01987 USP_OKCHK USP domain i 30.3 96 0.0021 18.2 3.4 29 47-75 78-106 (124)
142 TIGR00685 T6PP trehalose-phosp 30.2 1.3E+02 0.0029 20.4 4.5 57 3-71 2-59 (244)
143 PF13653 GDPD_2: Glycerophosph 29.9 16 0.00034 17.5 -0.2 10 10-19 20-29 (30)
144 cd05005 SIS_PHI Hexulose-6-pho 29.1 1.1E+02 0.0024 19.7 3.8 28 44-71 92-119 (179)
145 PF01751 Toprim: Toprim domain 27.6 47 0.001 19.5 1.6 12 1-12 59-70 (100)
146 smart00485 XPGN Xeroderma pigm 27.0 75 0.0016 18.6 2.4 15 51-65 67-82 (99)
147 PRK00766 hypothetical protein; 26.6 72 0.0016 21.8 2.5 34 38-73 84-119 (194)
148 COG2179 Predicted hydrolase of 26.5 1.5E+02 0.0032 20.2 3.9 27 47-73 55-81 (175)
149 PF07157 DNA_circ_N: DNA circu 26.4 50 0.0011 19.9 1.6 23 65-87 66-89 (93)
150 KOG1014 17 beta-hydroxysteroid 25.6 2E+02 0.0044 21.2 4.9 44 42-85 86-135 (312)
151 TIGR03640 cas1_DVULG CRISPR-as 25.6 1.6E+02 0.0034 21.5 4.3 26 38-63 46-71 (340)
152 PF05822 UMPH-1: Pyrimidine 5' 25.5 40 0.00086 24.0 1.2 28 46-73 98-125 (246)
153 PLN02775 Probable dihydrodipic 25.5 1.5E+02 0.0033 21.5 4.2 38 47-84 97-135 (286)
154 TIGR01544 HAD-SF-IE haloacid d 25.1 1.1E+02 0.0024 22.0 3.4 27 47-73 130-156 (277)
155 KOG3588 Chondroitin synthase 1 25.0 33 0.00071 26.4 0.7 18 1-18 312-329 (494)
156 TIGR00287 cas1 CRISPR-associat 24.6 1.6E+02 0.0034 21.2 4.2 26 38-63 42-67 (323)
157 smart00460 TGc Transglutaminas 24.3 1E+02 0.0022 16.2 2.5 19 46-64 16-34 (68)
158 PRK10826 2-deoxyglucose-6-phos 23.5 1.3E+02 0.0027 19.9 3.3 29 45-73 99-127 (222)
159 cd05017 SIS_PGI_PMI_1 The memb 23.5 1.8E+02 0.0038 17.4 4.6 28 44-73 60-87 (119)
160 PRK09552 mtnX 2-hydroxy-3-keto 23.0 1.2E+02 0.0025 20.2 3.1 27 47-73 83-109 (219)
161 PRK13936 phosphoheptose isomer 22.7 1.6E+02 0.0034 19.7 3.6 28 44-71 128-155 (197)
162 COG1433 Uncharacterized conser 22.7 1.6E+02 0.0034 18.6 3.4 22 45-66 56-77 (121)
163 PLN02887 hydrolase family prot 21.8 1.1E+02 0.0025 24.3 3.2 30 44-73 331-360 (580)
164 PF09895 DUF2122: RecB-family 21.8 2.1E+02 0.0046 17.7 4.1 30 44-75 9-38 (106)
165 PF10686 DUF2493: Protein of u 21.8 1.6E+02 0.0034 16.6 3.0 24 38-61 40-64 (71)
166 PF01380 SIS: SIS domain SIS d 21.7 1.9E+02 0.004 17.0 4.0 28 44-71 70-97 (131)
167 PRK11543 gutQ D-arabinose 5-ph 21.6 1.8E+02 0.0038 20.6 3.9 28 44-71 106-133 (321)
168 PF13419 HAD_2: Haloacid dehal 21.5 1.1E+02 0.0025 18.5 2.6 28 46-73 85-112 (176)
169 PF02568 ThiI: Thiamine biosyn 21.4 1E+02 0.0022 21.0 2.5 25 38-62 10-35 (197)
170 TIGR03333 salvage_mtnX 2-hydro 21.0 1.4E+02 0.0029 19.9 3.1 27 47-73 79-105 (214)
171 PLN02331 phosphoribosylglycina 20.6 1.1E+02 0.0025 20.9 2.6 20 43-62 38-57 (207)
172 PHA03105 EEV glycoprotein; Pro 20.5 55 0.0012 22.0 1.0 12 9-20 128-139 (188)
173 smart00775 LNS2 LNS2 domain. T 20.4 2.5E+02 0.0054 18.0 4.5 24 45-68 34-57 (157)
174 TIGR03639 cas1_NMENI CRISPR-as 20.2 2E+02 0.0044 20.4 4.0 22 41-62 46-67 (278)
175 PF01113 DapB_N: Dihydrodipico 20.2 99 0.0022 18.9 2.1 38 47-84 84-123 (124)
176 PLN03017 trehalose-phosphatase 20.2 3.9E+02 0.0084 20.1 5.6 54 3-72 110-166 (366)
177 COG1456 CdhE CO dehydrogenase/ 20.1 1.4E+02 0.0029 23.0 3.1 29 44-73 149-177 (467)
178 TIGR01662 HAD-SF-IIIA HAD-supe 20.1 1.6E+02 0.0036 17.6 3.1 11 7-17 3-13 (132)
179 PRK06186 hypothetical protein; 20.0 1E+02 0.0022 21.6 2.3 32 38-69 64-98 (229)
No 1
>COG0528 PyrH Uridylate kinase [Nucleotide transport and metabolism]
Probab=99.92 E-value=2.5e-25 Score=153.81 Aligned_cols=83 Identities=40% Similarity=0.775 Sum_probs=79.9
Q ss_pred CCcEEEEeec-cCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCc
Q 035510 1 HAEVVLKGTN-VDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQV 77 (88)
Q Consensus 1 ~ad~li~~td-VdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~ 77 (88)
+||.|+++|+ ||||||+||+ |+|+++++++|.|+++.+..+||++|+++|++++||++|||+++++++.+++.|++.
T Consensus 153 ~ad~ll~atn~VDGVY~~DPkk~pdA~~~~~Lty~e~l~~~l~vmD~tA~~l~~~~~i~i~Vfn~~~~~~l~~~~~ge~~ 232 (238)
T COG0528 153 EADVLLKATNKVDGVYDADPKKDPDAKKYDTLTYDEVLKIGLKVMDPTAFSLARDNGIPIIVFNINKPGNLKRALKGEEV 232 (238)
T ss_pred CCcEEEEeccCCCceeCCCCCCCCCceecccCCHHHHHHhcCeeecHHHHHHHHHcCCcEEEEeCCCCccHHHHHcCCCC
Confidence 5899999996 9999999999 999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEec
Q 035510 78 GTFIDR 83 (88)
Q Consensus 78 GT~i~~ 83 (88)
||+|.+
T Consensus 233 gT~V~~ 238 (238)
T COG0528 233 GTIVEP 238 (238)
T ss_pred ceEecC
Confidence 999864
No 2
>PRK14558 pyrH uridylate kinase; Provisional
Probab=99.91 E-value=5.3e-24 Score=146.81 Aligned_cols=83 Identities=36% Similarity=0.699 Sum_probs=79.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCce
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVG 78 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~G 78 (88)
+||.|+++|||||||++||+ |+|++|++++++|+.+.+..+||..|+++|+++|++++|+|+++|+++.++++|++.|
T Consensus 146 ~a~~l~~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~G 225 (231)
T PRK14558 146 KADILIKATKVDGIYDKDPKKFPDAKKIDHLTFSEAIKMGLKVMDTEAFSICKKYGITILVINFFEPGNLLKALKGENVG 225 (231)
T ss_pred CCCEEEEEecCCeeEccCCCCCCCCeEcccccHHHHHHcCcccccHHHHHHHHHCCCCEEEEeCCCCCHHHHHHCCCCCc
Confidence 68999999999999999999 8999999999999888888899999999999999999999999999999999999999
Q ss_pred eEEec
Q 035510 79 TFIDR 83 (88)
Q Consensus 79 T~i~~ 83 (88)
|+|.+
T Consensus 226 T~i~~ 230 (231)
T PRK14558 226 TLVVP 230 (231)
T ss_pred EEeCC
Confidence 99976
No 3
>PRK14556 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=8.9e-24 Score=147.81 Aligned_cols=82 Identities=32% Similarity=0.603 Sum_probs=78.0
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCce
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVG 78 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~G 78 (88)
+||+|+++||||||||+||+ |+|++|+++++.|..+.+..+||.+|+++|.++|+|++|+|+++|++|.+++.|+..|
T Consensus 164 ~Ad~Lii~TdVDGVYd~DP~~~p~A~~i~~I~~~e~~~~~l~vmd~~A~~~a~~~gIpi~I~ng~~~~~L~~~l~Ge~~G 243 (249)
T PRK14556 164 GADALLKATTVNGVYDKDPNKYSDAKRFDKVTFSEVVSKELNVMDLGAFTQCRDFGIPIYVFDLTQPNALVDAVLDSKYG 243 (249)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCceEeeEEchhhhcccchHhHHHHHHHHHHHCCCcEEEECCCCchHHHHHHcCCCCc
Confidence 69999999999999999998 8999999999998877778899999999999999999999999999999999999999
Q ss_pred eEEe
Q 035510 79 TFID 82 (88)
Q Consensus 79 T~i~ 82 (88)
|+|.
T Consensus 244 T~i~ 247 (249)
T PRK14556 244 TWVT 247 (249)
T ss_pred eEEE
Confidence 9995
No 4
>PRK00358 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=2.2e-23 Score=143.44 Aligned_cols=82 Identities=38% Similarity=0.794 Sum_probs=77.2
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCce
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVG 78 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~G 78 (88)
+||.|+++|||||||++||+ |+|++|++++++|+.+.|+..+|++|+++|.+++++++|+|+++|+++.++++|+..|
T Consensus 148 ~A~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~g~~~~d~~a~~~a~~~~i~v~I~~g~~~~~l~~~l~g~~~G 227 (231)
T PRK00358 148 GADVLLKATNVDGVYDADPKKDPDAKKYDRLTYDEVLEKGLKVMDATAISLARDNKIPIIVFNMNKPGNLKRVVKGEHIG 227 (231)
T ss_pred CCCEEEEeeCcCceEcCCCCCCCCCEEeeEecHHHHHHcCCcchhHHHHHHHHHcCCcEEEECCCCchHHHHHHCCCCCC
Confidence 68999999999999999998 8999999999998877678889999999999999999999999999999999999899
Q ss_pred eEEe
Q 035510 79 TFID 82 (88)
Q Consensus 79 T~i~ 82 (88)
|+|.
T Consensus 228 T~i~ 231 (231)
T PRK00358 228 TLVS 231 (231)
T ss_pred EEeC
Confidence 9984
No 5
>PRK14557 pyrH uridylate kinase; Provisional
Probab=99.90 E-value=1.7e-23 Score=146.20 Aligned_cols=85 Identities=25% Similarity=0.548 Sum_probs=78.6
Q ss_pred CCcEEEEe-eccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCc
Q 035510 1 HAEVVLKG-TNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQV 77 (88)
Q Consensus 1 ~ad~li~~-tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~ 77 (88)
+||.|+++ ||||||||+||+ |+|++|+++++.|++..+...||..|+++|.++|++++|+||.+|++|.++++|+..
T Consensus 153 ~Ad~li~~ttdVdGvY~~DP~~~~~Ak~i~~i~~~e~~~~~~~~~~~~A~~~a~~~gi~v~I~ng~~~~~l~~~l~g~~~ 232 (247)
T PRK14557 153 NSDAILVAKQGVDGVFTSDPKHNKSAKMYRKLNYNDVVRQNIQVMDQAALLLARDYNLPAHVFNFDEPGVMRRICLGEHV 232 (247)
T ss_pred CCCEEEEecCCcCEeECCCCCCCCCCEEeeEEChhhhcccCHHHHHHHHHHHHHHCCCcEEEEeCCCChHHHHHHcCCCC
Confidence 68999999 599999999998 899999999998876666778999999999999999999999999999999999999
Q ss_pred eeEEecCC
Q 035510 78 GTFIDRTG 85 (88)
Q Consensus 78 GT~i~~~~ 85 (88)
||+|.+..
T Consensus 233 GT~i~~~~ 240 (247)
T PRK14557 233 GTLINDDA 240 (247)
T ss_pred cEEEecCc
Confidence 99998753
No 6
>cd04254 AAK_UMPK-PyrH-Ec UMP kinase (UMPK)-Ec, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of E. coli (Ec) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial and chloroplast UMPKs (this CD) have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of this CD be
Probab=99.88 E-value=1.6e-22 Score=139.48 Aligned_cols=82 Identities=46% Similarity=0.879 Sum_probs=77.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCce
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVG 78 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~G 78 (88)
+||.|+++|||||||++||+ |+++++++++++|+++.+..++|++|+++|.++|++++|+|+++|+++.++++|+..|
T Consensus 148 ~a~~l~~~tdVdGvy~~dp~~~~~a~~i~~i~~~~~~~~~~~~~d~~a~~~a~~~gi~~~I~~g~~~~~l~~~l~g~~~G 227 (231)
T cd04254 148 NADVILKATKVDGVYDADPKKNPNAKRYDHLTYDEVLSKGLKVMDATAFTLCRDNNLPIVVFNINEPGNLLKAVKGEGVG 227 (231)
T ss_pred CCCEEEEEeCCCEEEecCCCCCCCcEEeeEecHHHHHhcchhhhHHHHHHHHHHCCCeEEEEeCCCccHHHHHHCCCCCC
Confidence 58999999999999999998 8999999999998877788889999999999999999999999999999999999899
Q ss_pred eEEe
Q 035510 79 TFID 82 (88)
Q Consensus 79 T~i~ 82 (88)
|+|.
T Consensus 228 T~i~ 231 (231)
T cd04254 228 TLIS 231 (231)
T ss_pred EEeC
Confidence 9984
No 7
>TIGR02075 pyrH_bact uridylate kinase. This protein, also called UMP kinase, converts UMP to UDP by adding a phosphate from ATP. It is the first step in pyrimidine biosynthesis. GTP is an allosteric activator. In a large fraction of all bacterial genomes, the gene tends to be located immediately downstream of elongation factor Ts and upstream of ribosome recycling factor. A related protein family, believed to be equivalent in function and found in the archaea and in spirochetes, is described by a separate model, TIGR02076.
Probab=99.87 E-value=3.3e-22 Score=138.18 Aligned_cols=82 Identities=40% Similarity=0.751 Sum_probs=77.2
Q ss_pred CCcEEEEeec-cCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCc
Q 035510 1 HAEVVLKGTN-VDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQV 77 (88)
Q Consensus 1 ~ad~li~~td-VdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~ 77 (88)
+||.|+++|| |||||++||+ |++++|++++++|+.+.+...+|++++++|.+++++++|+||.+|+++.++++|+.+
T Consensus 149 ~a~~li~~td~VdGvy~~dp~~~~~a~~i~~i~~~e~~~~~~~~~d~~~~~~a~~~~i~v~i~~g~~~~~l~~~l~g~~~ 228 (233)
T TIGR02075 149 NADVILKGTNGVDGVYTADPKKNKDAKKYETITYNEALKKNLKVMDLTAFALARDNNLPIVVFNIDEPGALKKVILGKGI 228 (233)
T ss_pred CCCEEEEeecccCeEEcCCCCCCCCCeECcEecHHHHHhcCHHHHHHHHHHHHHHCCCeEEEEeCCCcchHHHHHCCCCC
Confidence 6899999999 9999999998 889999999999887777778999999999999999999999999999999999999
Q ss_pred eeEEe
Q 035510 78 GTFID 82 (88)
Q Consensus 78 GT~i~ 82 (88)
||+|.
T Consensus 229 GT~i~ 233 (233)
T TIGR02075 229 GTLVS 233 (233)
T ss_pred CEEeC
Confidence 99984
No 8
>cd04239 AAK_UMPK-like AAK_UMPK-like: UMP kinase (UMPK)-like, the microbial/chloroplast uridine monophosphate kinase (uridylate kinase) enzyme that catalyzes UMP phosphorylation and plays a key role in pyrimidine nucleotide biosynthesis. Regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinases of E. coli (Ec) and Pyrococcus furiosus (Pf) are known to function as homohexamers, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Als
Probab=99.86 E-value=1.5e-21 Score=134.35 Aligned_cols=82 Identities=48% Similarity=0.860 Sum_probs=76.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCce
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQVG 78 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~G 78 (88)
+||.|+++||||||||+||+ |+|++|++++++|+.+.....+|++|++++.+++++++|+|+++|+++.++++|+..|
T Consensus 146 ~a~~li~~tdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~~~l~g~~~G 225 (229)
T cd04239 146 GADVLLKATNVDGVYDADPKKNPDAKKYDRISYDELLKKGLKVMDATALTLCRRNKIPIIVFNGLKPGNLLRALKGEHVG 225 (229)
T ss_pred CCCEEEEEECCCcccCCCCCCCCCCeEEeEEcHHHHHHHhcCCccHHHHHHHHHCCCeEEEECCCChhHHHHHHcCCCCC
Confidence 58999999999999999998 8899999999988876555788999999999999999999999999999999999899
Q ss_pred eEEe
Q 035510 79 TFID 82 (88)
Q Consensus 79 T~i~ 82 (88)
|+|.
T Consensus 226 T~i~ 229 (229)
T cd04239 226 TLIE 229 (229)
T ss_pred eEeC
Confidence 9984
No 9
>cd04253 AAK_UMPK-PyrH-Pf AAK_UMPK-PyrH-Pf: UMP kinase (UMPK)-Pf, the mostly archaeal uridine monophosphate kinase (uridylate kinase) enzymes that catalyze UMP phosphorylation and play a key role in pyrimidine nucleotide biosynthesis; regulation of this process is via feed-back control and via gene repression of carbamoyl phosphate synthetase (the first enzyme of the pyrimidine biosynthesis pathway). The UMP kinase of Pyrococcus furiosus (Pf) is known to function as a homohexamer, with GTP and UTP being allosteric effectors. Like other related enzymes (carbamate kinase, aspartokinase, and N-acetylglutamate kinase) the E. coli and most bacterial UMPKs have a conserved, N-terminal, lysine residue proposed to function in the catalysis of the phosphoryl group transfer, whereas most archaeal UMPKs (this CD) appear to lack this residue and the Pyrococcus furiosus structure has an additional Mg ion bound to the ATP molecule which is proposed to function as the catalysis instead. Members of thi
Probab=99.86 E-value=2.2e-21 Score=133.02 Aligned_cols=82 Identities=33% Similarity=0.566 Sum_probs=73.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhC--------CC-CcchHHHHHHHHhCCCCEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSR--------GA-IPMDSTALSFCDENSIPVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~--------g~-~~~d~~a~~la~~~gi~v~I~ng~~~~~i~ 69 (88)
+||.|+++|||||||++||+ |+|++|++++++|+.+. |. ..+|+++++++.+++++++|+||++|+++.
T Consensus 129 ~a~~li~~tdVdGVy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~d~~a~~~~~~~gi~~~I~~g~~p~~l~ 208 (221)
T cd04253 129 GADLLINATNVDGVYSKDPRKDPDAKKFDRLSADELIDIVGKSSWKAGSNEPFDPLAAKIIERSGIKTIVVDGRDPENLE 208 (221)
T ss_pred CCCEEEEEeCCCeeECCCCCCCCCCeEeeEeCHHHHHHHccCCCcCCCCCcchHHHHHHHHHHCCCeEEEECCCCccHHH
Confidence 68999999999999999998 88999999999877542 22 357999999999999999999999999999
Q ss_pred HhhcCCCceeEEe
Q 035510 70 KAICGDQVGTFID 82 (88)
Q Consensus 70 ~~l~g~~~GT~i~ 82 (88)
++++|+..||+|.
T Consensus 209 ~~l~g~~~GT~I~ 221 (221)
T cd04253 209 RALKGEFVGTIIE 221 (221)
T ss_pred HHHCCCCCCeEeC
Confidence 9999998999984
No 10
>COG0263 ProB Glutamate 5-kinase [Amino acid transport and metabolism]
Probab=99.86 E-value=1.9e-21 Score=140.89 Aligned_cols=85 Identities=22% Similarity=0.404 Sum_probs=75.7
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCH--HHHhh--------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISF--RELGS--------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~--~e~~~--------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||+|+++|||||+||+||+ |+|++|++++. +|+.. .|+++| ++.|+++|.++|++++|++|..|+
T Consensus 163 ~ADlLvlLsDiDGLyd~nPr~~pdAk~i~~V~~it~ei~~~aggsgs~~GTGGM~TKl~AA~iA~~aG~~~iI~~g~~~~ 242 (369)
T COG0263 163 GADLLVLLSDIDGLYDANPRTNPDAKLIPEVEEITPEIEAMAGGSGSELGTGGMRTKLEAAKIATRAGVPVIIASGSKPD 242 (369)
T ss_pred CCCEEEEEEccCcccCCCCCCCCCCeeehhhcccCHHHHHHhcCCCCCCCcccHHHHHHHHHHHHHcCCcEEEecCCCcc
Confidence 69999999999999999999 99999998764 23432 277888 799999999999999999999999
Q ss_pred hHHHhhcCCCceeEEecCC
Q 035510 67 NISKAICGDQVGTFIDRTG 85 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~~~~ 85 (88)
.+.+++.|+..||+|.|..
T Consensus 243 ~i~~~~~~~~~GT~F~~~~ 261 (369)
T COG0263 243 VILDALEGEAVGTLFEPQA 261 (369)
T ss_pred hHHHHHhCCCCccEEecCC
Confidence 9999999999999999754
No 11
>TIGR02076 pyrH_arch uridylate kinase, putative. This family consists of the archaeal and spirochete proteins most closely related to bacterial uridylate kinases (TIGR02075), an enzyme involved in pyrimidine biosynthesis. Members are likely, but not known, to be functionally equivalent to their bacterial counterparts. However, substantial sequence differences suggest that regulatory mechanisms may be different; the bacterial form is allosterically regulated by GTP.
Probab=99.84 E-value=1e-20 Score=129.53 Aligned_cols=82 Identities=32% Similarity=0.522 Sum_probs=73.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhC------CCC---cchHHHHHHHHhCCCCEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSR------GAI---PMDSTALSFCDENSIPVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~------g~~---~~d~~a~~la~~~gi~v~I~ng~~~~~i~ 69 (88)
+||.|+++|||||||++||+ |+|++|++++++|+.+. +.+ .+|++|++++.+++++++|+|+++|+++.
T Consensus 129 ~A~~li~ltdVdGvy~~dP~~~~~a~~i~~i~~~e~~~~~~~~~~~~g~~~~~~~~a~~~~~~~~i~v~I~~g~~~~~l~ 208 (221)
T TIGR02076 129 KADLLINATNVDGVYDKDPKKDPDAKKFDKLTPEELVEIVGSSSVKAGSNEVVDPLAAKIIERSKIRTIVVNGRDPENLE 208 (221)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEeeEECHHHHHHHhcCCCccCCCCceeHHHHHHHHHHCCCcEEEECCCCccHHH
Confidence 58999999999999999998 89999999998876542 223 45999999999999999999999999999
Q ss_pred HhhcCCCceeEEe
Q 035510 70 KAICGDQVGTFID 82 (88)
Q Consensus 70 ~~l~g~~~GT~i~ 82 (88)
++++|+..||+|.
T Consensus 209 ~~l~g~~~GT~i~ 221 (221)
T TIGR02076 209 KVLKGEHVGTIIE 221 (221)
T ss_pred HHHCCCCCCeEeC
Confidence 9999998999984
No 12
>PRK12314 gamma-glutamyl kinase; Provisional
Probab=99.84 E-value=1.8e-20 Score=131.98 Aligned_cols=84 Identities=24% Similarity=0.381 Sum_probs=73.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCH--HHHhhC--------CCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISF--RELGSR--------GAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~--~e~~~~--------g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||.|+++|||||||++||+ |+|++|++|++ .+..+. ++++| |+.|++.|.++|++++|+||++|+
T Consensus 168 ~Ad~liilTDVdGVy~~dP~~~~~a~~i~~I~~~~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~gv~v~I~~g~~~~ 247 (266)
T PRK12314 168 KADLLIILSDIDGLYDKNPRINPDAKLRSEVTEITEEILALAGGAGSKFGTGGMVTKLKAAKFLMEAGIKMVLANGFNPS 247 (266)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEecCCCHHHHHHhccCCCCcccCchHHHHHHHHHHHHCCCeEEEEcCCCch
Confidence 58999999999999999998 88999999875 333321 44566 889999999999999999999999
Q ss_pred hHHHhhcCCCceeEEecC
Q 035510 67 NISKAICGDQVGTFIDRT 84 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~~~ 84 (88)
++.+++.|+..||+|.|.
T Consensus 248 ~i~~~l~g~~~GT~i~~~ 265 (266)
T PRK12314 248 DILDFLEGESIGTLFAPK 265 (266)
T ss_pred HHHHHHcCCCCceEEccC
Confidence 999999999899999874
No 13
>PRK13402 gamma-glutamyl kinase; Provisional
Probab=99.83 E-value=4e-20 Score=135.37 Aligned_cols=84 Identities=18% Similarity=0.292 Sum_probs=74.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCH--HHHhh--------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISF--RELGS--------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~--~e~~~--------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||.|+++|||||||++||+ |+|++|++|++ +++.. .|+++| ++.|+++|.++|++++|+|+..|+
T Consensus 161 ~Ad~LiilTDVdGvy~~dP~~~p~a~~I~~I~~i~~e~~~l~~~~~s~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 240 (368)
T PRK13402 161 DADTLIILSDIDGLYDQNPRTNPDAKLIKQVTEINAEIYAMAGGAGSNVGTGGMRTKIQAAKIAMSHGIETFIGNGFTAD 240 (368)
T ss_pred CCCEEEEEecCCeEEeCCCCCCCCCEEEEEeccCcHHHHHHhcccccCcCcCCchHHHHHHHHHHHcCCcEEEEcCCCch
Confidence 58999999999999999998 89999999986 44432 257788 579999999999999999999999
Q ss_pred hHHHhhcCCCceeEEecC
Q 035510 67 NISKAICGDQVGTFIDRT 84 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~~~ 84 (88)
.+.+++.|+..||+|.+.
T Consensus 241 ~l~~~l~g~~~GT~i~~~ 258 (368)
T PRK13402 241 IFNQLLKGQNPGTYFTPE 258 (368)
T ss_pred HHHHHhcCCCCceEEecC
Confidence 999999999999999874
No 14
>cd04242 AAK_G5K_ProB AAK_G5K_ProB: Glutamate-5-kinase (G5K) catalyzes glutamate-dependent ATP cleavage; G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, in the first and controlling step of proline (and, in mammals, ornithine) biosynthesis. G5K is subject to feedback allosteric inhibition by proline or ornithine. In microorganisms and plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia. Microbial G5K generally consists of two domains: a catalytic G5K domain and one PUA (pseudo uridine synthases and archaeosine-specific transglycosylases) domain, and some lack the PUA domain. G5K requires free Mg for activity, it is tetrameric, and it aggregates to higher forms in a proline-dependent way. G5K lacking the PUA domain remains tetrameric, active, and proline-inhibitable, but the Mg requir
Probab=99.82 E-value=7e-20 Score=127.68 Aligned_cols=82 Identities=27% Similarity=0.431 Sum_probs=73.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccC--HHHHhh--------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHIS--FRELGS--------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~--~~e~~~--------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||.|+++|||||||++||+ |++++|++++ ++|+.+ .++++| ++.++..+.++|++++|+|++.|+
T Consensus 156 ~Ad~liilTDVdGvy~~dP~~~~~a~~i~~i~~~~~e~~~~~~~~~~~~~tggm~~Kl~a~~~a~~~gi~v~I~~g~~~~ 235 (251)
T cd04242 156 NADLLILLSDVDGLYDKNPRENPDAKLIPEVEEITDEIEAMAGGSGSSVGTGGMRTKLKAARIATEAGIPVVIANGRKPD 235 (251)
T ss_pred CCCEEEEecCcCEEEeCCCCCCCCCeEEEEecCChHHHHHHhcccCcCcccCCcHHHHHHHHHHHHCCCcEEEEcCCCCC
Confidence 58999999999999999999 7899999998 776543 256778 568999999999999999999999
Q ss_pred hHHHhhcCCCceeEEe
Q 035510 67 NISKAICGDQVGTFID 82 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~ 82 (88)
++.++++|++.||+|.
T Consensus 236 ~i~~~l~g~~~GT~i~ 251 (251)
T cd04242 236 VLLDILAGEAVGTLFL 251 (251)
T ss_pred HHHHHHcCCCCCeEeC
Confidence 9999999999999984
No 15
>cd04256 AAK_P5CS_ProBA AAK_P5CS_ProBA: Glutamate-5-kinase (G5K) domain of the bifunctional delta 1-pyrroline-5-carboxylate synthetase (P5CS), composed of an N-terminal G5K (ProB) and a C-terminal glutamyl 5- phosphate reductase (G5PR, ProA), the first and second enzyme catalyzing proline (and, in mammals, ornithine) biosynthesis. G5K transfers the terminal phosphoryl group of ATP to the gamma-carboxyl group of glutamate, and is subject to feedback allosteric inhibition by proline or ornithine. In plants, proline plays an important role as an osmoprotectant and, in mammals, ornithine biosynthesis is crucial for proper ammonia detoxification, since a G5K mutation has been shown to cause human hyperammonaemia.
Probab=99.82 E-value=8.3e-20 Score=129.80 Aligned_cols=82 Identities=26% Similarity=0.346 Sum_probs=73.2
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHHhh--------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELGS--------RGAIPM--DSTALSFCDENSIPVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~--------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i~ 69 (88)
+||.|+++|||||||++||+ |++++|++++..++.+ .++++| |+.|+..|.++|++++|+||.+|+++.
T Consensus 192 ~Ad~Li~lTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~~~~~~s~~gtGGM~~Kl~Aa~~a~~~Gi~v~I~~G~~~~~i~ 271 (284)
T cd04256 192 KADLLILLSDVDGLYDGPPGSDDAKLIHTFYPGDQQSITFGTKSRVGTGGMEAKVKAALWALQGGTSVVITNGMAGDVIT 271 (284)
T ss_pred CCCEEEEEeCCCeeecCCCCCCCCeEcccccHhHHHHhhcccccCcccCCcHHHHHHHHHHHHCCCeEEEEcCCCccHHH
Confidence 58999999999999999999 9999999998765432 157888 678999999999999999999999999
Q ss_pred HhhcCCCceeEEe
Q 035510 70 KAICGDQVGTFID 82 (88)
Q Consensus 70 ~~l~g~~~GT~i~ 82 (88)
++++|+..||+|.
T Consensus 272 ~~l~G~~~GT~~~ 284 (284)
T cd04256 272 KILEGKKVGTFFT 284 (284)
T ss_pred HHHcCCCCCEEeC
Confidence 9999999999983
No 16
>TIGR01027 proB glutamate 5-kinase. Bacterial ProB proteins hit the full length of this model, but the ProB-like domain of delta 1-pyrroline-5-carboxylate synthetase does not hit the C-terminal 100 residues of this model. The noise cutoff is set low enough to hit delta 1-pyrroline-5-carboxylate synthetase and other partial matches to this family.
Probab=99.80 E-value=2.3e-19 Score=131.10 Aligned_cols=84 Identities=25% Similarity=0.371 Sum_probs=73.2
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHH--HH--hh------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFR--EL--GS------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~--e~--~~------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||.|+++|||||||++||+ |+|++|+++++. ++ +. .++++| ++.|++.|.++|++++|+|+.+|+
T Consensus 157 ~Ad~liilTDVdGVy~~dP~~~p~A~~I~~i~~~~~~~~~i~~~~~~~~gtGGM~~Kl~Aa~~a~~~gi~v~I~~g~~~~ 236 (363)
T TIGR01027 157 GADLLVLLTDVDGLYDADPRTNPDAKLIPVVEEITDLLLGVAGDSGSSVGTGGMRTKLQAADLATRAGVPVIIASGSKPE 236 (363)
T ss_pred CCCEEEEEeCCCcccCCCCCCCCCCeEEEEeccCcHHHHHhhcCCCcCcCcCCchHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 58999999999999999997 899999999753 22 12 256778 577999999999999999999999
Q ss_pred hHHHhhcCCCceeEEecC
Q 035510 67 NISKAICGDQVGTFIDRT 84 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~~~ 84 (88)
++.++++|+..||+|.+.
T Consensus 237 ~l~~~l~g~~~GT~i~~~ 254 (363)
T TIGR01027 237 KIADALEGAPVGTLFHAQ 254 (363)
T ss_pred HHHHHhcCCCCcEEEeeC
Confidence 999999999999999874
No 17
>PRK05429 gamma-glutamyl kinase; Provisional
Probab=99.80 E-value=2.7e-19 Score=131.01 Aligned_cols=84 Identities=26% Similarity=0.398 Sum_probs=74.0
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCH--HHHhh--------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISF--RELGS--------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~--~e~~~--------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||.|+++|||||||++||+ |++++|+++++ +++.+ .++++| |+.|+..+.++|++++|+||.+|+
T Consensus 165 ~Ad~LiilTDVdGVy~~dP~~~p~a~~I~~i~~~~~e~~~~~~~~~~~~gtGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~ 244 (372)
T PRK05429 165 EADLLILLTDVDGLYTADPRKNPDAKLIPEVEEITDELEAMAGGAGSGLGTGGMATKLEAARIATRAGIPVVIASGREPD 244 (372)
T ss_pred CCCEEEEecCCCeeEcCCCCCCCCceEEEEeccCCHHHHHHhcCCCCCcCcCCcHHHHHHHHHHHHCCCeEEEEcCCCcc
Confidence 58999999999999999998 88999999986 34422 256677 679999999999999999999999
Q ss_pred hHHHhhcCCCceeEEecC
Q 035510 67 NISKAICGDQVGTFIDRT 84 (88)
Q Consensus 67 ~i~~~l~g~~~GT~i~~~ 84 (88)
++.+++.|+..||+|.+.
T Consensus 245 ~l~~~l~g~~~GT~i~~~ 262 (372)
T PRK05429 245 VLLRLLAGEAVGTLFLPQ 262 (372)
T ss_pred HHHHHhcCCCCCEEEeeC
Confidence 999999999999999975
No 18
>PTZ00489 glutamate 5-kinase; Provisional
Probab=99.80 E-value=3.7e-19 Score=125.49 Aligned_cols=84 Identities=15% Similarity=0.198 Sum_probs=71.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCcee---eeccCHHHHhh-------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNAT---FEHISFRELGS-------RGAIPM--DSTALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~---i~~i~~~e~~~-------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~ 66 (88)
+||+|+++|||||||++||+ |+|++ +++++.+++.. .++++| |+.|++.+.++|++++|+||.+|+
T Consensus 161 ~Ad~LiilTDVdGVy~~dP~~~~~A~~~~~i~~i~~~~~~~~~~~~~~~~tGGM~~Kl~aa~~a~~~Gi~v~I~~g~~~~ 240 (264)
T PTZ00489 161 KADLLVILSDIDGYYTENPRTSTDAKIRSVVHELSPDDLVAEATPNNRFATGGIVTKLQAAQFLLERGGKMYLSSGFHLE 240 (264)
T ss_pred CCCEEEEeeccCeeEcCCCCCCCccceeeeeccCCHHHHHHhcCcCCCcccCChHHHHHHHHHHHHCCCCEEEEeCCCch
Confidence 58999999999999999998 77887 66777765421 256677 899999999999999999999999
Q ss_pred hHHHhhcCC--CceeEEecC
Q 035510 67 NISKAICGD--QVGTFIDRT 84 (88)
Q Consensus 67 ~i~~~l~g~--~~GT~i~~~ 84 (88)
.+.+++.|+ ..||+|.|.
T Consensus 241 ~i~~~l~g~~~~~GT~~~~~ 260 (264)
T PTZ00489 241 KARDFLIGGSHEIGTLFYPR 260 (264)
T ss_pred HHHHHHcCCCCCCceEEeec
Confidence 999999875 479999874
No 19
>cd02115 AAK Amino Acid Kinases (AAK) superfamily, catalytic domain; present in such enzymes like N-acetylglutamate kinase (NAGK), carbamate kinase (CK), aspartokinase (AK), glutamate-5-kinase (G5K) and UMP kinase (UMPK). The AAK superfamily includes kinases that phosphorylate a variety of amino acid substrates. These kinases catalyze the formation of phosphoric anhydrides, generally with a carboxylate, and use ATP as the source of the phosphoryl group; are involved in amino acid biosynthesis. Some of these kinases control the process via allosteric feed-back inhibition.
Probab=99.77 E-value=1.5e-18 Score=119.37 Aligned_cols=80 Identities=28% Similarity=0.450 Sum_probs=72.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.|+++|||||||++||+ +++++|++++++|+.+ .|...+|+.++..+.+++++++|+|+.+|+++ +++.++
T Consensus 164 ~A~~li~~tdV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~k~~a~~~~~~~~~~v~I~~~~~~~~l-~~~~~~ 242 (248)
T cd02115 164 KADRLVILTDVDGVYTADPRKVPDAKLLSELTYEEAAELAYAGAMVLKPKAADPAARAGIPVRIANTENPGAL-ALFTPD 242 (248)
T ss_pred CCCEEEEEecCCeeecCCCCcCCcCeECCcCCHHHHHHHHHcCCCccCHHHHHHHHHcCCcEEEEeCCCcccc-cccCCC
Confidence 58999999999999999999 8899999999976644 46667799999999999999999999999999 999888
Q ss_pred CceeEE
Q 035510 76 QVGTFI 81 (88)
Q Consensus 76 ~~GT~i 81 (88)
..||+|
T Consensus 243 ~~GT~I 248 (248)
T cd02115 243 GGGTLI 248 (248)
T ss_pred CCCCCC
Confidence 899986
No 20
>cd04245 AAK_AKiii-YclM-BS AAK_AKiii-YclM-BS: Amino Acid Kinase Superfamily (AAK), AKiii-YclM-BS; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine plus threonine-sensitive aspartokinase isoenzyme AKIII, a monofunctional class enzyme found in Bacilli (Bacillus subtilis YclM) and Clostridia species. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In Bacillus subtilis (BS), YclM is reported to be a single polypeptide of 50 kD. The Bacillus subtilis 168 AKIII is induced by lysine and repressed by threonine, and it is synergistically inhibited by lysine and threonine.
Probab=99.76 E-value=3.8e-18 Score=121.62 Aligned_cols=73 Identities=29% Similarity=0.425 Sum_probs=67.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+.+||||||||++||+ |+|+.|++++|+|+.+ .|..++|+.|+++|++++||++|.|.++|+
T Consensus 211 ~A~~v~i~tdVdGvytaDPr~v~~A~~i~~lsy~EA~ela~~GakVlhp~ai~~a~~~~Ipi~v~n~~~p~--------- 281 (288)
T cd04245 211 QADLYENFTDVDGIYAANPRIVANPKPISEMTYREMRELSYAGFSVFHDEALIPAIEAGIPINIKNTNHPE--------- 281 (288)
T ss_pred CCCEEEEEeCCCceECCCCCCCCCCeEeCccCHHHHHHHHHCCCcccCHHHHHHHHHCCCcEEEeeCCCCC---------
Confidence 58999999999999999999 9999999999999877 589999999999999999999999999886
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 282 ~~GT~I~ 288 (288)
T cd04245 282 APGTLIV 288 (288)
T ss_pred CCCceeC
Confidence 4699874
No 21
>cd04234 AAK_AK AAK_AK: Amino Acid Kinase Superfamily (AAK), Aspartokinase (AK); this CD includes the N-terminal catalytic domain of aspartokinase (4-L-aspartate-4-phosphotransferase;). AK is the first enzyme in the biosynthetic pathway of the aspartate family of amino acids (lysine, threonine, methionine, and isoleucine) and the bacterial cell wall component, meso-diaminopimelate. It also catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. One mechanism for the regulation of this pathway is by the production of several isoenzymes of aspartokinase with different repressors and allosteric inhibitors. Pairs of ACT domains are proposed to specifically bind amino acids leading to allosteric regulation of the enzyme. In Escherichia coli, three different aspartokinase isoenzymes are regulated specifically by lysine, methionine, and threonine. AK-HSDHI (ThrA) and AK-HSDHII (MetL) are bifunctional enzymes that consist of an N-terminal AK and a C-terminal homoserine dehyd
Probab=99.74 E-value=7.9e-18 Score=115.91 Aligned_cols=73 Identities=30% Similarity=0.397 Sum_probs=65.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|+++||||||||+||+ +++++|++++++|+.+ .|..+||+.|+++|.+++++++|+|+++|+
T Consensus 150 ~A~~l~~~tdV~Gvy~~dP~~~~~a~~i~~i~~~e~~~l~~~G~~~~~~~a~~~a~~~~i~i~i~~~~~~~--------- 220 (227)
T cd04234 150 GADEVEIWTDVDGIYTADPRIVPEARLIPEISYDEALELAYFGAKVLHPRAVEPARKANIPIRVKNTFNPE--------- 220 (227)
T ss_pred CCCEEEEEECCCccCCCCCCCCCCceEcCcCCHHHHHHHHhCCccccCHHHHHHHHHcCCeEEEEeCCCCC---------
Confidence 58999999999999999999 8899999999987755 488899999999999999999999999886
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 221 ~~gT~I~ 227 (227)
T cd04234 221 APGTLIT 227 (227)
T ss_pred CCCCEeC
Confidence 3488873
No 22
>COG0527 LysC Aspartokinases [Amino acid transport and metabolism]
Probab=99.74 E-value=8.3e-18 Score=125.75 Aligned_cols=75 Identities=29% Similarity=0.387 Sum_probs=69.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+.+||||||||++||| |+|++|++++|+|+++ .|..++|+.++++|.+++||++|.|.++|+
T Consensus 211 ~Ad~~~I~TDVdGI~TaDPRiVp~Ar~i~~isyeEa~ELA~~GAkVLHprav~pa~~~~Ip~~i~~t~~p~--------- 281 (447)
T COG0527 211 GADEVEIWTDVDGVYTADPRIVPDARLLPEISYEEALELAYLGAKVLHPRAVEPAMRSGIPLRIKNTFNPD--------- 281 (447)
T ss_pred CCCEEEEEECCCCCccCCCCCCCcceEcCccCHHHHHHHHHCCchhcCHHHHHHHHhcCCcEEEEecCCCC---------
Confidence 68999999999999999999 9999999999999887 488999999999999999999999998886
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|.+.
T Consensus 282 ~~GTlI~~~ 290 (447)
T COG0527 282 APGTLITAE 290 (447)
T ss_pred CCceEEecC
Confidence 369999875
No 23
>cd04246 AAK_AK-DapG-like AAK_AK-DapG-like: Amino Acid Kinase Superfamily (AAK), AK-DapG-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional enzymes found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species, as well as, the catalytic AK domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related isoenzymes. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. The role of the AKI isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulati
Probab=99.74 E-value=8.6e-18 Score=116.22 Aligned_cols=72 Identities=25% Similarity=0.393 Sum_probs=64.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|+++|||||||++||+ |++++|++++++|+.+ .|...+|++|+++|+++|||++|+|+++|+
T Consensus 163 ~A~~li~~tdV~GVy~~dP~~~~~a~~i~~l~~~e~~~l~~~G~~~~~~~a~~~a~~~gi~i~i~~~~~~~--------- 233 (239)
T cd04246 163 KADRCEIYTDVDGVYTADPRIVPKARKLDVISYDEMLEMASLGAKVLHPRSVELAKKYNVPLRVRSSFSEN--------- 233 (239)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHCCCeEEEecCCCCC---------
Confidence 58999999999999999998 8899999999987655 577889999999999999999999998874
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
.||+|.
T Consensus 234 -~gt~i~ 239 (239)
T cd04246 234 -PGTLIT 239 (239)
T ss_pred -CCcEeC
Confidence 388873
No 24
>cd04255 AAK_UMPK-MosAB AAK_UMPK-MosAB: This CD includes the alpha and beta subunits of the Mo storage protein (MosA and MosB) which are related to uridine monophosphate kinase (UMPK) enzymes that catalyze the phosphorylation of UMP by ATP, yielding UDP, and playing a key role in pyrimidine nucleotide biosynthesis. The Mo storage protein from the nitrogen-fixing bacterium, Azotobacter vinelandii, is characterized as an alpha4-beta4 octamer containing a polynuclear molybdenum-oxide cluster which is ATP-dependent to bind Mo and pH-dependent to release Mo. These and related bacterial sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.73 E-value=2.1e-17 Score=116.42 Aligned_cols=82 Identities=26% Similarity=0.420 Sum_probs=68.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhC--CCCcchHHHHHHHHhC--CCCEEEEeCCCcchHHHhhcC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSR--GAIPMDSTALSFCDEN--SIPVVVFNLLEPGNISKAICG 74 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~--g~~~~d~~a~~la~~~--gi~v~I~ng~~~~~i~~~l~g 74 (88)
+||.|+++|||||||++||+ |+|++|++++++++.+. +...|+-.+..+++.+ .++++|+||++|+++.+++.|
T Consensus 175 ~ad~li~~TdVdGVy~~dP~~~~~a~~i~~i~~~~~~~~~~~~~~~~~~~~~~l~aa~~~~~v~I~~g~~~~~L~~~l~g 254 (262)
T cd04255 175 GARNLIFVKDEDGLYTADPKKNKKAEFIPEISAAELLKKDLDDLVLERPVLDLLQNARHVKEVQIVNGLVPGNLTRALRG 254 (262)
T ss_pred CCCEEEEEeccCeeECCCCCCCCCCeEccEeCHHHHHHHhcCCCCCcHHHHHHHHHhCCCCcEEEEeCCCCCHHHHHHcC
Confidence 58999999999999999998 88999999999876553 3345776666665532 369999999999999999999
Q ss_pred CCceeEEe
Q 035510 75 DQVGTFID 82 (88)
Q Consensus 75 ~~~GT~i~ 82 (88)
+..||+|.
T Consensus 255 ~~~GT~i~ 262 (262)
T cd04255 255 EHVGTIIR 262 (262)
T ss_pred CCCceEeC
Confidence 99999984
No 25
>cd04261 AAK_AKii-LysC-BS AAK_AKii-LysC-BS: Amino Acid Kinase Superfamily (AAK), AKii; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis 168, and the lysine plus threonine-sensitive aspartokinase of Corynebacterium glutamicum, and related sequences. In B. subtilis 168, the regulation of the diaminopimelate (Dap)-lysine biosynthetic pathway involves dual control by Dap and lysine, effected through separate Dap- and lysine-sensitive aspartokinase isoenzymes. The B. subtilis 168 AKII is induced by methionine, and repressed and inhibited by lysine. Although Corynebacterium glutamicum is known to contain a single aspartokinase isoenzyme type, both the succinylase and dehydrogenase variant pathways of DAP-lysine synthesis operate simultaneously in this organism. In this organism and other various Gram-positive bacteria, the DAP-lysine pathway is feedback regulated by the concerted action of lysine and
Probab=99.73 E-value=1.4e-17 Score=115.33 Aligned_cols=72 Identities=25% Similarity=0.411 Sum_probs=64.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|+++|||||||++||+ |++++|++++++|+.+ .|...+|+.|+++|.++|||++|+|+++|+
T Consensus 163 ~A~~lii~tdV~GVy~~dP~~~~~a~~i~~i~~~ea~~l~~~G~~~~~~~a~~~~~~~~i~i~I~n~~~~~--------- 233 (239)
T cd04261 163 GADRCEIYTDVDGVYTADPRIVPKARKLDEISYDEMLEMASLGAKVLHPRSVELAKKYGVPLRVLSSFSEE--------- 233 (239)
T ss_pred CCCEEEEEeCCCCCCCCCCCCCCCceEccccCHHHHHHHHhccccccCHHHHHHHHHcCCeEEEecCCCCC---------
Confidence 58999999999999999998 7899999999987765 578889999999999999999999998873
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
.||+|.
T Consensus 234 -~gt~i~ 239 (239)
T cd04261 234 -PGTLIT 239 (239)
T ss_pred -CCcEeC
Confidence 488874
No 26
>cd04257 AAK_AK-HSDH AAK_AK-HSDH: Amino Acid Kinase Superfamily (AAK), AK-HSDH; this CD includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK - homoserine dehydrogenase (HSDH). These aspartokinases are found in bacteria (E. coli AKI-HSDHI, ThrA and E. coli AKII-HSDHII, MetL) and higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-HSDH is an alanine-act
Probab=99.73 E-value=1.7e-17 Score=118.52 Aligned_cols=73 Identities=27% Similarity=0.449 Sum_probs=66.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.++++|||||||++||+ |+|++|++++|+|+.+ .|..++|+.++++|.+++||++|.|+++|+
T Consensus 217 ~a~~l~i~tdVdGvyt~DP~~~~~A~~i~~is~~ea~~l~~~Gakv~h~~~~~~a~~~~Ipi~i~~~~~p~--------- 287 (294)
T cd04257 217 DADQVEIWTDVDGVYSADPRKVKDARLLPSLSYQEAMELSYFGAKVLHPKTIQPVAKKNIPILIKNTFNPE--------- 287 (294)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCCEEEeeCCCCC---------
Confidence 68999999999999999999 9999999999998766 588899999999999999999999999885
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 288 ~~GT~I~ 294 (294)
T cd04257 288 APGTLIS 294 (294)
T ss_pred CCCCEeC
Confidence 5688873
No 27
>cd04241 AAK_FomA-like AAK_FomA-like: This CD includes a fosfomycin biosynthetic gene product, FomA, and similar proteins found in a wide range of organisms. Together, the fomA and fomB genes in the fosfomycin biosynthetic gene cluster of Streptomyces wedmorensis confer high-level fosfomycin resistance. FomA and FomB proteins converted fosfomycin to fosfomycin monophosphate and fosfomycin diphosphate in the presence of ATP and a magnesium ion, indicating that FomA and FomB catalyzed phosphorylations of fosfomycin and fosfomycin monophosphate, respectively. FomA and related sequences in this CD are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.72 E-value=1.4e-17 Score=115.74 Aligned_cols=80 Identities=29% Similarity=0.322 Sum_probs=68.7
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHH---HhhC-------CCCcc--hHHHHHHHHhCCCCEEEEeCCCcchH
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRE---LGSR-------GAIPM--DSTALSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e---~~~~-------g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i 68 (88)
+||.|+++|||||||++|| |++++|+++++++ +.+. .+++| ++.++..+.++|++++|++|.+|+++
T Consensus 161 ~A~~li~ltdv~Gv~~~~P-~~~~~i~~i~~~~~~~~~~~~~~~~~~~tGGm~~Kl~aa~~a~~~Gv~v~I~~g~~~~~l 239 (252)
T cd04241 161 KPERVIFLTDVDGVYDKPP-PDAKLIPEIDVGSLEDILAALGSAGTDVTGGMAGKIEELLELARRGIEVYIFNGDKPENL 239 (252)
T ss_pred CCCEEEEEeCCCeeECCCC-CCCeEcceeCccchHHHHHhcCcCCccccCCHHHHHHHHHHHHhcCCeEEEEeCCCHHHH
Confidence 5899999999999999999 8899999998743 3321 34566 67788888899999999999999999
Q ss_pred HHhhcCCCceeEE
Q 035510 69 SKAICGDQVGTFI 81 (88)
Q Consensus 69 ~~~l~g~~~GT~i 81 (88)
.+++.|+..||+|
T Consensus 240 ~~~l~g~~~GT~i 252 (252)
T cd04241 240 YRALLGNFIGTRI 252 (252)
T ss_pred HHHHcCCCCceEC
Confidence 9999999899986
No 28
>TIGR01092 P5CS delta l-pyrroline-5-carboxylate synthetase. This protein contains a glutamate 5-kinase (ProB, EC 2.7.2.11) region followed by a gamma-glutamyl phosphate reductase (ProA, EC 1.2.1.41) region.
Probab=99.72 E-value=1.4e-17 Score=130.06 Aligned_cols=87 Identities=22% Similarity=0.385 Sum_probs=75.3
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHHh---h------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcchH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELG---S------RGAIPM--DSTALSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~---~------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i 68 (88)
+||.|+++|||||||++||+ |++++|++++..+.. . .++++| |+.|++.|.++|++++|+||.+++++
T Consensus 181 ~Ad~LiilTDVdGVy~~dP~~~~a~~I~~i~~~~~~~~i~~~~~~~~~tGGM~~Kl~aa~~a~~~gi~v~I~~g~~~~~l 260 (715)
T TIGR01092 181 KADLLILLSDVEGLYDGPPSDDDSKLIDTFYKEKHQGEITFGTKSRLGRGGMTAKVKAAVWAAYGGTPVIIASGTAPKNI 260 (715)
T ss_pred CCCEEEEEeCCCeeeCCCCCCCCCeEeeeecccchhhhhccCcccccCCCCchHHHHHHHHHHHCCCeEEEeCCCCcchH
Confidence 58999999999999999999 999999988753221 1 246777 67999999999999999999999999
Q ss_pred HHhhcCCCceeEEecCCCC
Q 035510 69 SKAICGDQVGTFIDRTGRM 87 (88)
Q Consensus 69 ~~~l~g~~~GT~i~~~~~~ 87 (88)
.+++.|+..||+|.+.+.|
T Consensus 261 ~~~l~g~~~GT~~~~~~~~ 279 (715)
T TIGR01092 261 TKVVEGKKVGTLFHEDAHL 279 (715)
T ss_pred HHHhcCCCCceEecccchh
Confidence 9999999899999887665
No 29
>cd04259 AAK_AK-DapDC AAK_AK-DapDC: Amino Acid Kinase Superfamily (AAK), AK-DapDC; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the bifunctional enzyme AK - DAP decarboxylase (DapDC) found in some bacteria. Aspartokinase is the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. DapDC, which is the lysA gene product, catalyzes the decarboxylation of DAP to lysine.
Probab=99.72 E-value=2.1e-17 Score=118.06 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=66.2
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.++++|||||||++||+ |+|++|++++++|+.+ .|..++|+.|+++|++++||++|.|+++|+
T Consensus 218 ~A~~l~i~TdV~Gvyt~DP~~~~~a~~i~~ls~~ea~~l~~~Ga~v~h~~a~~~a~~~~ipi~i~~~~~p~--------- 288 (295)
T cd04259 218 QAARCEIWTDVPGLFTANPHEVPHARLLKRLDYDEAQEIATMGAKVLHPRCIPPARRANIPMVVRSTERPE--------- 288 (295)
T ss_pred CCCEEEEEECCCccccCCCCCCCCCeEeceeCHHHHHHHHHcCCcccCHHHHHHHHHCCCCEEEEeCCCCC---------
Confidence 58999999999999999998 8999999999988765 488889999999999999999999999885
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 289 ~~GT~I~ 295 (295)
T cd04259 289 LSGTLIT 295 (295)
T ss_pred CCCcEeC
Confidence 5689874
No 30
>cd04243 AAK_AK-HSDH-like AAK_AK-HSDH-like: Amino Acid Kinase Superfamily (AAK), AK-HSDH-like; this family includes the N-terminal catalytic domain of aspartokinase (AK) of the bifunctional enzyme AK- homoserine dehydrogenase (HSDH). These aspartokinases are found in such bacteria as E. coli (AKI-HSDHI, ThrA and AKII-HSDHII, MetL) and in higher plants (Z. mays AK-HSDH). AK and HSDH are the first and third enzymes in the biosynthetic pathway of the aspartate family of amino acids. AK catalyzes the phosphorylation of Asp to P-aspartyl phosphate. HSDH catalyzes the NADPH-dependent conversion of Asp 3-semialdehyde to homoserine. ThrA and MetL are involved in threonine and methionine biosynthesis, respectively. In E. coli, ThrA is subject to allosteric regulation by the end product L-threonine and the native enzyme is reported to be tetrameric. As with bacteria, plant AK and HSDH are feedback inhibited by pathway end products. Maize AK-HSDH is a Thr-sensitive 180-kD enzyme. Arabidopsis AK-
Probab=99.72 E-value=2e-17 Score=118.11 Aligned_cols=73 Identities=29% Similarity=0.420 Sum_probs=66.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.++++|||||||++||+ |+|++|++++++|+.+ .|..++|+.++++|++++||++|.|+++|+
T Consensus 216 ~a~~~~i~tdvdGiyt~dP~~~~~a~~i~~ls~~ea~~l~~~Gakvl~p~ai~~a~~~~i~i~i~~~~~p~--------- 286 (293)
T cd04243 216 DAEEVEIWTDVDGVYTADPRKVPDARLLKELSYDEAMELAYFGAKVLHPRTIQPAIRKNIPIFIKNTFNPE--------- 286 (293)
T ss_pred CCCEEEEEeCCCccCCCCCCCCCCCeEeceeCHHHHHHHHhCCCcccCHHHHHHHHHCCCcEEEecCCCCC---------
Confidence 68999999999999999999 9999999999998766 588899999999999999999999999885
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 287 ~~GT~I~ 293 (293)
T cd04243 287 APGTLIS 293 (293)
T ss_pred CCCCEeC
Confidence 5689874
No 31
>cd04247 AAK_AK-Hom3 AAK_AK-Hom3: Amino Acid Kinase Superfamily (AAK), AK-Hom3; this CD includes the N-terminal catalytic domain of the aspartokinase HOM3, a monofunctional class enzyme found in Saccharomyces cerevisiae and other related AK domains. Aspartokinase, the first enzyme in the aspartate metabolic pathway, catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP, and in fungi, is responsible for the production of threonine, isoleucine and methionine. S. cerevisiae has a single aspartokinase isoenzyme type, which is regulated by feedback, allosteric inhibition by L-threonine. Recent studies show that the allosteric transition triggered by binding of threonine to AK involves a large change in the conformation of the native hexameric enzyme that is converted to an inactive one of different shape and substantially smaller hydrodynamic size.
Probab=99.72 E-value=2.6e-17 Score=118.14 Aligned_cols=74 Identities=20% Similarity=0.282 Sum_probs=68.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.+++||||||||++||+ |+|++|++++|+|+.+ .|..++|+.++++|++++||++|.|.++|+
T Consensus 227 ~a~~v~i~tdVdGvyt~DP~~~~~a~~i~~is~~ea~el~~~GakVlHp~ti~pa~~~~Ipi~i~nt~~P~--------- 297 (306)
T cd04247 227 NADELQIWKEVDGIFTADPRKVPTARLLPSITPEEAAELTYYGSEVIHPFTMEQVIKARIPIRIKNVENPR--------- 297 (306)
T ss_pred CCCEEEEeecCCeeECCCCCCCCCCeEecccCHHHHHHHHhCcCcccCHHHHHHHHHcCCcEEEecCCCCC---------
Confidence 58999999999999999999 9999999999998776 488899999999999999999999998885
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
..||+|.|
T Consensus 298 ~~GT~I~~ 305 (306)
T cd04247 298 GEGTVIYP 305 (306)
T ss_pred CCCcEEcC
Confidence 56999976
No 32
>COG1608 Predicted archaeal kinase [General function prediction only]
Probab=99.71 E-value=2.1e-17 Score=114.84 Aligned_cols=82 Identities=33% Similarity=0.353 Sum_probs=67.2
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhCCCCcchHHH--------HHHHHhCCCCEEEEeCCCcchHHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSRGAIPMDSTA--------LSFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~g~~~~d~~a--------~~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
++|+++|+|||||||++||+ |+++.+++++....+ .|++..|+|+ +....+++.++|+|||++|++|.+
T Consensus 161 ~pd~v~f~tdVdGVy~~~p~~~p~~~~l~~i~~~~~~-~gs~~~DVTGGi~~Kl~~~~~~~~~~~~vyi~ng~~~~ni~~ 239 (252)
T COG1608 161 KPDRVIFLTDVDGVYDRDPGKVPDARLLSEIEGRVAL-GGSGGTDVTGGIAKKLEALLEIARYGKEVYIFNGNKPENIYR 239 (252)
T ss_pred CCCEEEEEecCCceecCCCCcCccccchhhhhhhhhh-cCcCcccchhhHHHHHHHHHHHHhcCceEEEECCCCHHHHHH
Confidence 57999999999999999998 889999988775433 3455455554 444466778899999999999999
Q ss_pred hhcCCCceeEEec
Q 035510 71 AICGDQVGTFIDR 83 (88)
Q Consensus 71 ~l~g~~~GT~i~~ 83 (88)
+|+|+++||.|.+
T Consensus 240 ~l~G~~vGT~I~~ 252 (252)
T COG1608 240 ALRGENVGTRIDG 252 (252)
T ss_pred HhcCCCCceEecC
Confidence 9999999999863
No 33
>cd04244 AAK_AK-LysC-like AAK_AK-LysC-like: Amino Acid Kinase Superfamily (AAK), AK-LysC-like; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive AK isoenzyme found in higher plants. The lysine-sensitive AK isoenzyme is a monofunctional protein. It is involved in the overall regulation of the aspartate pathway and can be synergistically inhibited by S-adenosylmethionine. Also included in this CD is an uncharacterized LysC-like AK found in Euryarchaeota and some bacteria. AK catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP.
Probab=99.71 E-value=3.9e-17 Score=116.78 Aligned_cols=73 Identities=29% Similarity=0.378 Sum_probs=66.4
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.++++|||||||++||+ |+++++++++++|+.+ .|..++|+.|+++|++++||++|.|+++|+
T Consensus 221 ~a~~l~i~tdV~Gv~~~dP~~~~~a~~i~~lsy~Ea~el~~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~p~--------- 291 (298)
T cd04244 221 DADEIWIWKDVDGVMTADPRIVPEARTIPRLSYAEAMELAYFGAKVLHPRTVEPAMEKGIPVRVKNTFNPE--------- 291 (298)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCeEcCccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEeeCCCCC---------
Confidence 58999999999999999999 8999999999998766 488899999999999999999999999885
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 292 ~~GT~I~ 298 (298)
T cd04244 292 APGTLIT 298 (298)
T ss_pred CCCCEeC
Confidence 5589874
No 34
>PLN02418 delta-1-pyrroline-5-carboxylate synthase
Probab=99.71 E-value=4e-17 Score=127.59 Aligned_cols=87 Identities=21% Similarity=0.295 Sum_probs=74.9
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHH---hh------CCCCcc--hHHHHHHHHhCCCCEEEEeCCCcchH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFREL---GS------RGAIPM--DSTALSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~---~~------~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i 68 (88)
+||.|+++|||||||++||+ +++++|++++..+. .. .++++| |+.|+..+.++|++++|+||..|+++
T Consensus 189 ~Ad~li~~TdVdGvy~~~p~~~~a~~i~~i~~~~~~~~i~~~~~s~~~tGGM~~Kl~Aa~~a~~~Gi~v~I~~g~~~~~l 268 (718)
T PLN02418 189 KADLLILLSDVEGLYTGPPSDPSSKLIHTYIKEKHQDEITFGEKSRVGRGGMTAKVKAAVNAASAGIPVVITSGYALDNI 268 (718)
T ss_pred CCCEEEEeecCCeeecCCCCCCCceEcceecccchhhhhhcccccccCCCCcHHHHHHHHHHHHCCCcEEEeCCCCcchH
Confidence 58999999999999999999 99999999865321 11 157788 67999999999999999999999999
Q ss_pred HHhhcCCCceeEEecCCCC
Q 035510 69 SKAICGDQVGTFIDRTGRM 87 (88)
Q Consensus 69 ~~~l~g~~~GT~i~~~~~~ 87 (88)
.+++.|+..||+|.+.+-|
T Consensus 269 ~~~l~g~~~GT~i~~~~~~ 287 (718)
T PLN02418 269 RKVLRGERVGTLFHQDAHL 287 (718)
T ss_pred HHHhcCCCCceEeccccch
Confidence 9999999999999886543
No 35
>PRK09034 aspartate kinase; Reviewed
Probab=99.70 E-value=7.5e-17 Score=120.61 Aligned_cols=75 Identities=28% Similarity=0.428 Sum_probs=68.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+.+||||||||++||+ |+|+++++++|+|+.+ .|..++|+.++++|++++||++|.|.++|+
T Consensus 211 ~A~~~~i~tdV~Gi~taDPr~v~~A~~l~~lsy~Ea~ela~~Gakvlhp~ai~~a~~~~Ipi~v~~~~~p~--------- 281 (454)
T PRK09034 211 KADLYENFTDVDGIYAANPRIVKNPKSIKEITYREMRELSYAGFSVFHDEALIPAYRGGIPINIKNTNNPE--------- 281 (454)
T ss_pred CCCEEEEEecCCccCcCCCCCCCCCeECCccCHHHHHHHHhCCcccCCHHHHHHHHHcCCCEEEEcCCCCC---------
Confidence 58999999999999999999 9999999999998877 589999999999999999999999998774
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|...
T Consensus 282 ~~GT~I~~~ 290 (454)
T PRK09034 282 DPGTLIVPD 290 (454)
T ss_pred CCccEEEec
Confidence 558888653
No 36
>PRK08841 aspartate kinase; Validated
Probab=99.69 E-value=8.1e-17 Score=118.76 Aligned_cols=73 Identities=29% Similarity=0.482 Sum_probs=65.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|++||||||||++||+ |+|++|++++|+|+.+ .|..++|+.|+++|.+++||++|.|++++
T Consensus 165 ~Ad~l~i~TDVdGVyt~DP~~v~~A~~i~~is~~ea~ela~~Ga~vlhp~ai~~a~~~~Ipi~i~n~~~~---------- 234 (392)
T PRK08841 165 NADECQIFTDVDGVYTCDPRVVKNARKLDVIDFPSMEAMARKGAKVLHLPSVQHAWKHSVPLRVLSSFEV---------- 234 (392)
T ss_pred CCCEEEEEeCCCCCCcCCCCCCCCceEcccccHHHHHHHHhcCccccCHHHHHHHHHCCCeEEEEecCCC----------
Confidence 58999999999999999999 9999999999997665 48889999999999999999999998864
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
..||+|..
T Consensus 235 ~~GT~I~~ 242 (392)
T PRK08841 235 GEGTLIKG 242 (392)
T ss_pred CCCeEEEe
Confidence 24899854
No 37
>cd04258 AAK_AKiii-LysC-EC AAK_AKiii-LysC-EC: Amino Acid Kinase Superfamily (AAK), AKiii-LysC-EC: this CD includes the N-terminal catalytic aspartokinase (AK) domain of the lysine-sensitive aspartokinase isoenzyme AKIII. AKIII is a monofunctional class enzyme (LysC) found in some bacteria such as E. coli. Aspartokinase is the first enzyme in the aspartate metabolic pathway and catalyzes the conversion of aspartate and ATP to aspartylphosphate and ADP. In E. coli, LysC is reported to be a homodimer of 50 kD subunits.
Probab=99.69 E-value=1.1e-16 Score=114.41 Aligned_cols=73 Identities=32% Similarity=0.395 Sum_probs=66.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.+++||||||||++||+ |+|+++++++|+|+.+ .|..++|+.+..++.+++||++|.|.++|+
T Consensus 215 ~a~~~~i~tdv~Gv~~~dP~~~~~a~~i~~isy~Ea~ela~~Gakvlhp~a~~~~~~~~ipi~i~~~~~p~--------- 285 (292)
T cd04258 215 HAEELQIWTDVAGIYTTDPRICPAARAIKEISFAEAAEMATFGAKVLHPATLLPAIRKNIPVFVGSSKDPE--------- 285 (292)
T ss_pred CCCEEEEEECCCccCCCCCCCCCCCeEeceeCHHHHHHHHHCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------
Confidence 58999999999999999999 9999999999998876 588899999999999999999999998875
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
..||+|.
T Consensus 286 ~~GT~I~ 292 (292)
T cd04258 286 AGGTLIT 292 (292)
T ss_pred CCCceeC
Confidence 5699874
No 38
>PRK05925 aspartate kinase; Provisional
Probab=99.69 E-value=1.2e-16 Score=119.38 Aligned_cols=75 Identities=25% Similarity=0.411 Sum_probs=68.0
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+++||||||||++||+ |+|++|++++|+|+.+ .|...++..++++|.++|||++|.|+++|+
T Consensus 202 ~Ad~~~i~TdVdGvytaDP~~~~~A~~i~~is~~ea~ela~~Ga~vl~~~~~~~a~~~~Ipi~I~~~~~p~--------- 272 (440)
T PRK05925 202 KAREVRIYTDVNGIYTMDPKIIKDAQLIPELSFEEMQNLASFGAKVLHPPMLKPCVRAGIPIFVTSTFDVT--------- 272 (440)
T ss_pred CCCEEEEEEcCCccCCCCcCCCCCCeEeeEECHHHHHHHHhCCCCcCCHHHHHHHHHCCCcEEEecCCCCC---------
Confidence 68999999999999999999 9999999999998765 478889999999999999999999999887
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
+.||+|.+.
T Consensus 273 ~~GT~i~~~ 281 (440)
T PRK05925 273 KGGTWIYAS 281 (440)
T ss_pred CCccEEecC
Confidence 369999764
No 39
>TIGR00656 asp_kin_monofn aspartate kinase, monofunctional class. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. The protein slr0657 from Synechocystis PCC6803 is extended by a duplication of the C-terminal region corresponding to the beta chain. Incorporation of a second copy of the C-terminal domain may be quite common in this subgroup of aspartokinases.
Probab=99.68 E-value=1.9e-16 Score=116.23 Aligned_cols=73 Identities=26% Similarity=0.376 Sum_probs=66.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|++||||||||++||+ |+|+++++++++|+.+ .|...+|+.|+++|++++||++|.|+++|+
T Consensus 166 ~A~~l~i~tdV~Gv~~~DP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~a~~~~i~i~i~~~~~~~--------- 236 (401)
T TIGR00656 166 KADRVDIYTDVPGVYTTDPRVVEAAKRIDKISYEEALELATFGAKVLHPRTVEPAMRSGVPIEVRSSFDPE--------- 236 (401)
T ss_pred CCCEEEEEECCCCCCcCCCCCCCCcEECCccCHHHHHHHHHcCCcccCHHHHHHHHHCCCeEEEEECCCCC---------
Confidence 58999999999999999999 8999999999998766 488899999999999999999999999885
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
.||+|.+
T Consensus 237 -~gT~I~~ 243 (401)
T TIGR00656 237 -EGTLITN 243 (401)
T ss_pred -CCeEEEe
Confidence 2888865
No 40
>PRK09084 aspartate kinase III; Validated
Probab=99.67 E-value=2.8e-16 Score=117.45 Aligned_cols=75 Identities=29% Similarity=0.355 Sum_probs=67.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+++||||||||++||+ |+|+++++++|+|+.+ .|..++|+.+.+++.+++||++|.|+++|+
T Consensus 211 ~a~~~~i~tdv~Gi~t~dP~~~~~a~~i~~is~~ea~ela~~Ga~vlh~~~~~~~~~~~i~i~i~~~~~~~--------- 281 (448)
T PRK09084 211 NASRVEIWTDVPGIYTTDPRIVPAAKRIDEISFEEAAEMATFGAKVLHPATLLPAVRSNIPVFVGSSKDPE--------- 281 (448)
T ss_pred CCCEEEEEECCCccccCCCCCCCCCeEcccCCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEEeCCCCC---------
Confidence 68999999999999999999 9999999999998876 488889999999999999999999999885
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|...
T Consensus 282 ~~GT~I~~~ 290 (448)
T PRK09084 282 AGGTWICND 290 (448)
T ss_pred CCceEEecC
Confidence 468988653
No 41
>cd04260 AAK_AKi-DapG-BS AAK_AKi-DapG-BS: Amino Acid Kinase Superfamily (AAK), AKi-DapG; this CD includes the N-terminal catalytic aspartokinase (AK) domain of the diaminopimelate-sensitive aspartokinase isoenzyme AKI (DapG), a monofunctional class enzyme found in Bacilli (Bacillus subtilis 168), Clostridia, and Actinobacteria bacterial species. In Bacillus subtilis, the regulation of the diaminopimelate-lysine biosynthetic pathway involves dual control by diaminopimelate and lysine, effected through separate diaminopimelate- and lysine-sensitive aspartokinase isoenzymes. AKI activity is invariant during the exponential and stationary phases of growth and is not altered by addition of amino acids to the growth medium. The role of this isoenzyme is most likely to provide a constant level of aspartyl-beta-phosphate for the biosynthesis of diaminopimelate for peptidoglycan synthesis and dipicolinate during sporulation. The B. subtilis AKI is tetrameric consisting of two alpha and two bet
Probab=99.67 E-value=1.9e-16 Score=110.07 Aligned_cols=72 Identities=26% Similarity=0.407 Sum_probs=63.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.|+++|||||||++||+ +++++|++++++|+.+ .|...+|+.|++++++++++++|.|+++|+
T Consensus 168 ~A~~l~~~tDV~GVy~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~v~~~~a~~~~~~~~i~v~I~~~~~~~--------- 238 (244)
T cd04260 168 NAEYVEIYTDVDGIMTADPRVVPNARILDVVSYNEVFQMAHQGAKVIHPRAVEIAMQANIPIRIRSTMSEN--------- 238 (244)
T ss_pred CCCEEEEEECCCcCCcCCCCCCCCCeEcccCCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC---------
Confidence 58999999999999999999 7899999999987655 477889999999999999999999998763
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
.||+|.
T Consensus 239 -~gt~i~ 244 (244)
T cd04260 239 -PGTLIT 244 (244)
T ss_pred -CCCEeC
Confidence 388873
No 42
>PRK06291 aspartate kinase; Provisional
Probab=99.67 E-value=2.8e-16 Score=117.77 Aligned_cols=75 Identities=29% Similarity=0.353 Sum_probs=67.5
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+++||||||||++||+ |+|+++++++++|+.+ .|..++|+.|+++|++++||++|.|+++|+
T Consensus 225 ~a~~~~i~tdV~Gi~~~dP~~~~~a~~i~~l~~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~--------- 295 (465)
T PRK06291 225 DADEIWIWTDVDGVMTTDPRIVPEARVIPKISYIEAMELSYFGAKVLHPRTIEPAMEKGIPVRVKNTFNPE--------- 295 (465)
T ss_pred CCCEEEEEECCCCCCCCCCCCCCCCeEccccCHHHHHHHHhCCCcccCHHHHHHHHHcCCcEEEecCCCCC---------
Confidence 58999999999999999999 8999999999998765 388889999999999999999999999884
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
+.||+|.+.
T Consensus 296 ~~gt~i~~~ 304 (465)
T PRK06291 296 FPGTLITSD 304 (465)
T ss_pred CCceEEEec
Confidence 458998753
No 43
>PLN02551 aspartokinase
Probab=99.67 E-value=3e-16 Score=119.23 Aligned_cols=75 Identities=29% Similarity=0.421 Sum_probs=68.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.+.+||||||||++||+ |+|+++++++|+|+.+ .|..++|+.+.++|++++||++|.|.++|+
T Consensus 270 ~A~~v~I~tDV~Gi~taDPr~v~~A~~l~~lsy~Ea~elA~~GakVlhp~ai~pa~~~~Ipi~vknt~~p~--------- 340 (521)
T PLN02551 270 GLREIQVWKDVDGVLTCDPRIYPNAVPVPYLTFDEAAELAYFGAQVLHPQSMRPAREGDIPVRVKNSYNPT--------- 340 (521)
T ss_pred CCCEEEEEeCCCceeCCCCCCCCCceEecccCHHHHHHHHhCCCcccCHHHHHHHHHCCceEEEEecCCCC---------
Confidence 58999999999999999999 9999999999999877 489999999999999999999999988774
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|...
T Consensus 341 ~~GT~I~~~ 349 (521)
T PLN02551 341 APGTLITKT 349 (521)
T ss_pred CCCcEEecc
Confidence 568998654
No 44
>KOG1154 consensus Gamma-glutamyl kinase [Amino acid transport and metabolism]
Probab=99.66 E-value=1.3e-16 Score=111.00 Aligned_cols=85 Identities=24% Similarity=0.328 Sum_probs=72.4
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHHh---------hCCCCcc--hHHHHHHHHhCCCCEEEEeCCCcchH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELG---------SRGAIPM--DSTALSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~---------~~g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i 68 (88)
+||+|+++|||||+|+.+|. .++++|+..+..+-. +.|+++| +++|+.+|...|++++|+||..|++|
T Consensus 181 ~ADlLilLsDVdglYt~PPd~~~~~li~~~~~~~~~v~~tfG~~SkvGtGGM~tKv~AA~~A~~~Gv~viI~~g~~p~~I 260 (285)
T KOG1154|consen 181 KADLLILLSDVDGLYTGPPDADPSKLIHTFSPGDPQVSTTFGSKSKVGTGGMETKVKAAVNALNAGVSVIITNGDAPENI 260 (285)
T ss_pred ccCEEEEEecccccccCCCCCCcceeeeeeccCCCCCccccCccCccCcCcchhhHHHHHHHhcCCceEEEeCCCChHHH
Confidence 58999999999999997777 678888776543211 1378899 68999999999999999999999999
Q ss_pred HHhhcCCCceeEEecCC
Q 035510 69 SKAICGDQVGTFIDRTG 85 (88)
Q Consensus 69 ~~~l~g~~~GT~i~~~~ 85 (88)
.+++.|..+||.|...+
T Consensus 261 ~~iv~g~kvgt~f~~~~ 277 (285)
T KOG1154|consen 261 TDIVEGKKVGTFFEQLK 277 (285)
T ss_pred HHHHhhhhhhhhhhhcc
Confidence 99999999999997654
No 45
>cd04240 AAK_UC AAK_UC: Uncharacterized (UC) amino acid kinase-like proteins found mainly in archaea and a few bacteria. Sequences in this CD are members of the Amino Acid Kinase (AAK) superfamily.
Probab=99.66 E-value=2.4e-16 Score=107.38 Aligned_cols=75 Identities=28% Similarity=0.344 Sum_probs=67.6
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC-Ccee
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD-QVGT 79 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~-~~GT 79 (88)
+|+.|+++|||||||++| +++|++++..++. +.+.+|..+++++.+++++++|+||++|+++.+++.|+ ..||
T Consensus 128 ~A~~Li~ltdVdGVy~~d----a~~i~~i~~~e~~--~~~~id~~~~~~~~~~gi~v~I~~g~~~~~l~~~l~g~~~~GT 201 (203)
T cd04240 128 GAKRLVIVTDVDGIYEKD----GKLVNEIAAAELL--GETSVDPAFPRLLTKYGIRCYVVNGDDPERVLAALRGREGVGT 201 (203)
T ss_pred CCCEEEEEeCCccccCCC----CcCccccCHHHhC--CCCeehhhHHHHHHhCCCeEEEECCCCccHHHHHHCCCCCCCC
Confidence 589999999999999964 8899999988764 37788988899999999999999999999999999998 7899
Q ss_pred EE
Q 035510 80 FI 81 (88)
Q Consensus 80 ~i 81 (88)
+|
T Consensus 202 ~I 203 (203)
T cd04240 202 RI 203 (203)
T ss_pred CC
Confidence 75
No 46
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=99.65 E-value=5.4e-16 Score=122.66 Aligned_cols=75 Identities=25% Similarity=0.389 Sum_probs=67.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+++||||||||++||+ |+|++|++++|+|+.+ .|..++|+.|+++|++++||++|.|+++|+
T Consensus 219 ~A~~~~i~tdVdGvyt~DP~~~~~A~~i~~isy~ea~el~~~G~kvlhp~a~~~a~~~~Ipi~i~n~~~p~--------- 289 (819)
T PRK09436 219 DADCCEIWTDVDGVYTADPRVVPDARLLKSLSYQEAMELSYFGAKVLHPRTIAPIAQFQIPCLIKNTFNPQ--------- 289 (819)
T ss_pred CCCEEEEEECCCceECCCCCCCCCCeEeeEecHHHHHHHHhcCCccchHHHHHHHHHCCceEEEccCCCCC---------
Confidence 58999999999999999999 9999999999998776 488899999999999999999999998886
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|...
T Consensus 290 ~~GT~I~~~ 298 (819)
T PRK09436 290 APGTLIGAE 298 (819)
T ss_pred CCceEEEec
Confidence 458888653
No 47
>PRK08210 aspartate kinase I; Reviewed
Probab=99.65 E-value=4.7e-16 Score=114.44 Aligned_cols=74 Identities=24% Similarity=0.367 Sum_probs=65.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.+++||||||||++||+ |++++|++++++|+.+ .|..++|+.|+++|++++||++|+|.+++.
T Consensus 170 ~A~~l~i~tDV~GV~~~dP~~~~~a~~i~~ls~~ea~~l~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~--------- 240 (403)
T PRK08210 170 KAEYVDIYTDVDGIMTADPRIVEDARLLDVVSYNEVFQMAYQGAKVIHPRAVEIAMQANIPLRIRSTYSDS--------- 240 (403)
T ss_pred CCCEEEEEECCCCCCcCCCCcCCCCeECCccCHHHHHHHHHCCccccCHHHHHHHHHCCCeEEEEecCCCc---------
Confidence 58999999999999999999 8999999999987765 588899999999999999999999988542
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
.||+|.+.
T Consensus 241 -~gT~I~~~ 248 (403)
T PRK08210 241 -PGTLITSL 248 (403)
T ss_pred -CCcEEEec
Confidence 38988653
No 48
>TIGR02078 AspKin_pair Pyrococcus aspartate kinase subunit, putative. This family consists of proteins restricted to and found as paralogous pairs (typically close together) in species of Pyrococcus, a hyperthermophilic archaeal genus. Members are always found close to other genes of threonine biosynthesis and appear to represent the Pyrococcal form of aspartate kinase. Alignment to aspartokinase III from E. coli shows that 300 N-terminal and 20 C-terminal amino acids are homologous, but the form in Pyrococcus lacks ~ 100 amino acids in between.
Probab=99.65 E-value=7e-16 Score=111.65 Aligned_cols=73 Identities=19% Similarity=0.334 Sum_probs=64.7
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.++++|||||||++||+ |+|++|++++++|+.+ .|...+|+.|+++|.++|||++|.|.++|+
T Consensus 193 ~A~~v~i~TDVdGVytaDP~~v~~A~~i~~lsy~Ea~ela~~Gakvlhp~a~~~a~~~~Ipi~I~~t~~~~--------- 263 (327)
T TIGR02078 193 NSKLVAIMSDVEGIFTADPKLVPSARLIPYLSYEEIKIAAKLGMKALQWKAADLAKEYKIPVLFGRTRDWR--------- 263 (327)
T ss_pred CCCEEEEEECCCccCCCCCCcCCCceEccccCHHHHHHHHHCCchhhHHHHHHHHHHCCCeEEEEeCCCcC---------
Confidence 58999999999999999999 9999999999998765 366678999999999999999999987662
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
.||+|..
T Consensus 264 -~GT~I~~ 270 (327)
T TIGR02078 264 -MGTLISN 270 (327)
T ss_pred -CCcEEec
Confidence 4899865
No 49
>PRK07431 aspartate kinase; Provisional
Probab=99.65 E-value=7.3e-16 Score=117.98 Aligned_cols=74 Identities=24% Similarity=0.321 Sum_probs=65.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|++||||||||++||+ ++|++|++++++|+.+ .|..+||+.|+++|.++|||++|.|++. +
T Consensus 167 ~A~~l~i~TDVdGVyt~DP~~~~~a~~i~~i~~~e~~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~----------~ 236 (587)
T PRK07431 167 GADACEIYTDVPGVLTTDPRLVPEAQLMDEISCDEMLELASLGASVLHPRAVEIARNYGVPLVVRSSWS----------D 236 (587)
T ss_pred CCCEEEEEeCCCccCcCCCCCCCCCeECCCcCHHHHHHHHhCCCceEhHHHHHHHHHcCCcEEEecCCC----------C
Confidence 58999999999999999999 8899999999988765 4888999999999999999999999872 2
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|.+.
T Consensus 237 ~~GT~i~~~ 245 (587)
T PRK07431 237 APGTLVTSP 245 (587)
T ss_pred CCCeEEEeC
Confidence 349999764
No 50
>TIGR00657 asp_kinases aspartate kinase. The Lys-sensitive enzyme of Bacillus subtilis resembles the E. coli form but is an alpha 2/beta 2 heterotetramer, where the beta subunit is translated from an in-phase alternative initiator at Met-246. This may be a feature of a number of closely related forms, including a paralog from B. subtilis.
Probab=99.64 E-value=8.6e-16 Score=114.19 Aligned_cols=75 Identities=28% Similarity=0.406 Sum_probs=67.0
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.|++||||||||++||+ |+++++++++++|+.+ .|..++|+.|+++|.+++||++|.|+++|+
T Consensus 205 ~a~~l~~~tDV~Gv~~~DP~~~~~a~~i~~is~~ea~el~~~G~~v~~~~a~~~~~~~~i~i~i~~~~~~~--------- 275 (441)
T TIGR00657 205 KADECEIYTDVDGIYTTDPRIVPDARRIDEISYEEMLELASFGAKVLHPRTLEPAMRAKIPIVVKSTFNPE--------- 275 (441)
T ss_pred CCCEEEEEECCCCCCcCCCCCCCCCeECCccCHHHHHHHHhcCCcccCHHHHHHHHHcCCeEEEecCCCCC---------
Confidence 58999999999999999999 8999999999987765 478889999999999999999999998773
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|.+.
T Consensus 276 ~~GT~I~~~ 284 (441)
T TIGR00657 276 APGTLIVAS 284 (441)
T ss_pred CCceEEEeC
Confidence 359999764
No 51
>COG2054 Uncharacterized archaeal kinase related to aspartokinases, uridylate kinases [General function prediction only]
Probab=99.61 E-value=1.1e-15 Score=102.85 Aligned_cols=80 Identities=28% Similarity=0.382 Sum_probs=72.5
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCC-cee
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGDQ-VGT 79 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~-~GT 79 (88)
+|..++++|||||||+.+|+ ++++++|+..++.. |...+|....+++.+++++++|+||..|+++.++++|++ +||
T Consensus 130 ~~~~vv~aTDVdGI~~~~~~--~kLv~eI~A~dl~~-~~t~vD~~~P~Ll~k~~m~~~Vvng~~pervi~~lrGk~~v~T 206 (212)
T COG2054 130 GATEVVKATDVDGIYEEDPK--GKLVREIRASDLKT-GETSVDPYLPKLLVKYKMNCRVVNGKEPERVILALRGKEVVGT 206 (212)
T ss_pred CCcEEEEEecCCcccccCCc--chhhhhhhHhhccc-CcccccchhhHHHHHcCCceEEECCCCHHHHHHHHhccccceE
Confidence 46789999999999999885 68999999998865 777899999999999999999999999999999999964 599
Q ss_pred EEec
Q 035510 80 FIDR 83 (88)
Q Consensus 80 ~i~~ 83 (88)
.|.+
T Consensus 207 ~Ivg 210 (212)
T COG2054 207 LIVG 210 (212)
T ss_pred EEeC
Confidence 9986
No 52
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=99.61 E-value=2.4e-15 Score=118.98 Aligned_cols=74 Identities=22% Similarity=0.253 Sum_probs=67.6
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.+.+||||||||++||+ |+|++|++++|+|+.+ .|..++|+.+.++|.+++||++|.|.++|+
T Consensus 222 ~A~~v~i~tDV~Gi~taDPr~v~~A~~i~~isy~Ea~ela~~GakVlHp~ti~pa~~~~Ipi~V~ntf~p~--------- 292 (810)
T PRK09466 222 GVERVTIWSDVAGVYSADPRKVKDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSDIDLQLRCSYQPE--------- 292 (810)
T ss_pred CCCEEEEEeCCCccccCCcccCCCceEcccCCHHHHHHHHHcCccccCHHHHHHHHHcCCeEEEecCCCCC---------
Confidence 58999999999999999999 9999999999998876 489999999999999999999999998774
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
..||+|..
T Consensus 293 ~~GT~I~~ 300 (810)
T PRK09466 293 QGSTRIER 300 (810)
T ss_pred CCceEEec
Confidence 45888864
No 53
>PRK06635 aspartate kinase; Reviewed
Probab=99.60 E-value=3.5e-15 Score=109.61 Aligned_cols=73 Identities=25% Similarity=0.408 Sum_probs=64.1
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|++||||||||++||+ +++++|++++++|+.+ .|...+++.|++++.+++++++|.|++++
T Consensus 165 ~A~~l~~~tDV~Gv~~~dP~~~~~a~~i~~i~~~e~~~l~~~g~~~~~~~a~~~~~~~~i~~~i~~~~~~---------- 234 (404)
T PRK06635 165 KADECEIYTDVDGVYTTDPRIVPKARKLDKISYEEMLELASLGAKVLHPRSVEYAKKYNVPLRVRSSFSD---------- 234 (404)
T ss_pred CCCEEEEEEcCCCCCcCCCCCCCCceECCccCHHHHHHHHHcCCcccCHHHHHHHHHcCceEEEEcCCCC----------
Confidence 58999999999999999999 8999999999987765 47788899999999999999999998744
Q ss_pred CceeEEec
Q 035510 76 QVGTFIDR 83 (88)
Q Consensus 76 ~~GT~i~~ 83 (88)
..||+|..
T Consensus 235 ~~gT~i~~ 242 (404)
T PRK06635 235 NPGTLITG 242 (404)
T ss_pred CCCCEEee
Confidence 23777754
No 54
>PRK12353 putative amino acid kinase; Reviewed
Probab=99.60 E-value=3.2e-15 Score=107.68 Aligned_cols=79 Identities=22% Similarity=0.291 Sum_probs=63.9
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh------CCCCcc--hHHHH-HHH-HhCCCCEEEEeCCCcchHHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS------RGAIPM--DSTAL-SFC-DENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~------~g~~~~--d~~a~-~la-~~~gi~v~I~ng~~~~~i~~ 70 (88)
+||.|+++|||||||+++|+|++++|+++++.++.+ .+.++| ++.|+ +.+ .+.|++++|++ ++++.+
T Consensus 226 ~Ad~Li~lTdvdGVy~~~~~~~a~~i~~i~~~e~~~~~~~~~~~tGGM~~Kl~aA~~a~~~~~g~~v~I~~---~~~i~~ 302 (314)
T PRK12353 226 DADLLIILTAVDKVYINFGKPNQKKLDEVTVSEAEKYIEEGQFAPGSMLPKVEAAISFVESRPGRKAIITS---LEKAKE 302 (314)
T ss_pred CCCEEEEEeCCccccCCCCCCCCeECcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHHcCCCEEEECC---chHHHH
Confidence 589999999999999976558899999999876533 245667 55665 555 47899999997 789999
Q ss_pred hhcCCCceeEEec
Q 035510 71 AICGDQVGTFIDR 83 (88)
Q Consensus 71 ~l~g~~~GT~i~~ 83 (88)
+++|+ .||+|.|
T Consensus 303 ~l~g~-~GT~i~~ 314 (314)
T PRK12353 303 ALEGK-AGTVIVK 314 (314)
T ss_pred HhCCC-CCeEecC
Confidence 99998 8999965
No 55
>PRK14058 acetylglutamate/acetylaminoadipate kinase; Provisional
Probab=99.60 E-value=4.5e-15 Score=104.48 Aligned_cols=80 Identities=21% Similarity=0.226 Sum_probs=68.6
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---CCCCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHHHhhcC
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---RGAIPM--DSTALSFCDENSI-PVVVFNLLEPGNISKAICG 74 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~g~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~~~l~g 74 (88)
+||.|+++|||||||++||+ ++++|++++.+|+.+ ..+++| ++.++..+.++|+ +++|+|+.+|+++.++|+|
T Consensus 182 ~A~~li~ltdv~Gv~~~~p~-~~~~i~~i~~~e~~~l~~~~tGgM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~l~~~l~G 260 (268)
T PRK14058 182 KAEALVLLSDVPGLLRDPPD-EGSLIERITPEEAEELSKAAGGGMKKKVLMAAEAVEGGVGRVIIADANVDDPISAALAG 260 (268)
T ss_pred CCCEEEEEeCChhhccCCCC-CCcCccCcCHHHHHHHhhccCCccHHHHHHHHHHHHcCCCEEEEEcCCCcchHHHHhCC
Confidence 58999999999999999885 578999998876543 356667 7888888889999 8999999999999999987
Q ss_pred CCceeEEec
Q 035510 75 DQVGTFIDR 83 (88)
Q Consensus 75 ~~~GT~i~~ 83 (88)
+ ||+|.+
T Consensus 261 ~--GT~I~~ 267 (268)
T PRK14058 261 E--GTVIVN 267 (268)
T ss_pred C--ceEEec
Confidence 5 999975
No 56
>PRK08373 aspartate kinase; Validated
Probab=99.59 E-value=5.1e-15 Score=107.70 Aligned_cols=73 Identities=19% Similarity=0.316 Sum_probs=64.8
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+|+.++++|||||||++||+ |+|++|++++++|+.+ .|..+++..|.++|++ +||++|.|.++|
T Consensus 203 ~A~~v~i~TDVdGVytaDP~~v~~A~~i~~isy~Ea~ela~~Gakvlhp~ai~~a~~-~Ipi~v~~t~~~---------- 271 (341)
T PRK08373 203 NAKAVLIMSDVEGIYTADPKLVPSARLIPYLSYDEALIAAKLGMKALHWKAIEPVKG-KIPIIFGRTRDW---------- 271 (341)
T ss_pred CCCEEEEEECCCccCCCCCCCCCCCeEcccCCHHHHHHHHHCcChhhhHHHHHHHHc-CCcEEEecCCCC----------
Confidence 58999999999999999999 8999999999998876 4777889999999999 999999998765
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|...
T Consensus 272 ~~GT~I~~~ 280 (341)
T PRK08373 272 RMGTLVSNE 280 (341)
T ss_pred CCCcEEecC
Confidence 249999653
No 57
>PRK08961 bifunctional aspartate kinase/diaminopimelate decarboxylase protein; Provisional
Probab=99.58 E-value=7.4e-15 Score=116.65 Aligned_cols=75 Identities=21% Similarity=0.400 Sum_probs=66.8
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.++++|||||||++||+ |+|++|++++++|+.+ .|..++|+.|+++|++++||++|.|+++|+
T Consensus 227 ~a~~~~i~tdv~Gv~t~dP~~~~~a~~i~~ls~~e~~el~~~g~~v~~~~a~~~a~~~~i~i~v~~~~~~~--------- 297 (861)
T PRK08961 227 GASRVEIWTDVPGMFSANPKEVPDARLLTRLDYDEAQEIATTGAKVLHPRSIKPCRDAGIPMAILDTERPD--------- 297 (861)
T ss_pred CCCEEEEEeCCCccccCCCCCCCCceEecccCHHHHHHHHHCCCeEECHHHHHHHHHCCCCEEEEeCCCCC---------
Confidence 58999999999999999999 9999999999988765 477889999999999999999999998873
Q ss_pred CceeEEecC
Q 035510 76 QVGTFIDRT 84 (88)
Q Consensus 76 ~~GT~i~~~ 84 (88)
..||+|.+.
T Consensus 298 ~~gT~I~~~ 306 (861)
T PRK08961 298 LSGTSIDGD 306 (861)
T ss_pred CCccEEeCC
Confidence 458888653
No 58
>TIGR00746 arcC carbamate kinase. The seed alignment for this model includes experimentally confirmed examples from a set of phylogenetically distinct species. In a neighbor-joining tree constructed from an alignment of candidate carbamate kinases and several acetylglutamate kinases, the latter group forms a clear outgroup which roots the tree of carbamate kinase-like proteins. This analysis suggests that in E. coli, the ArcC paralog YqeA may be a second isozyme, while the paralog YahI branches as an outlier and is less likely to be an authentic carbamate kinase. The homolog from Mycoplasma pneumoniae likewise branches outside the set containing known carbamate kinases and also scores below the trusted cutoff.
Probab=99.54 E-value=2.2e-14 Score=103.29 Aligned_cols=78 Identities=22% Similarity=0.326 Sum_probs=64.0
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh------CCCCcc--hHHHH-HHHHhCCCCEEEEeCCCcchHHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS------RGAIPM--DSTAL-SFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~------~g~~~~--d~~a~-~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+||+|+++|||||||+++++|++++|++++.+|+.+ .+.++| ++.|+ +++.+.+++++|++ ++++.++
T Consensus 223 ~AD~LIiLTDVdGVy~~~~~p~a~~i~~it~~e~~~~~~~g~~~tGgM~~Kl~AA~~~~~~g~~~v~I~~---~~~i~~~ 299 (310)
T TIGR00746 223 NADILVILTDVDAVYINYGKPDEKALREVTVEELEDYYKAGHFAAGSMGPKVEAAIEFVESGGKRAIITS---LENAVEA 299 (310)
T ss_pred CCCEEEEEeCCCceeCCCCCCCCcCCcCcCHHHHHHHHhcCCcCCCCcHHHHHHHHHHHHhCCCeEEEec---hHHHHHH
Confidence 599999999999999964338899999999877643 245677 45555 77777889999997 7899999
Q ss_pred hcCCCceeEEe
Q 035510 72 ICGDQVGTFID 82 (88)
Q Consensus 72 l~g~~~GT~i~ 82 (88)
+.|+ .||+|.
T Consensus 300 l~G~-~GT~I~ 309 (310)
T TIGR00746 300 LEGK-AGTRVT 309 (310)
T ss_pred HCCC-CCcEEe
Confidence 9999 899986
No 59
>PRK09181 aspartate kinase; Validated
Probab=99.54 E-value=2.6e-14 Score=107.68 Aligned_cols=74 Identities=15% Similarity=0.236 Sum_probs=66.3
Q ss_pred CCcEEEEeeccCeecCCCCC--C--CceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--D--NNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~--~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+||.+.+||||+ ||++||+ + +|++|++++|+|+.+ .|..++++.+.++|++++||++|.|.++|+
T Consensus 232 ~A~~~~IwTDV~-I~taDPriV~~~~A~~i~~lsy~Ea~ELA~~GAkVLHp~ti~pa~~~~Ipi~V~nt~~p~------- 303 (475)
T PRK09181 232 GADEAIIHKEYH-LSSADPKLVGEDKVVPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRIKNTFEPE------- 303 (475)
T ss_pred CCCEEEEeCCCc-cccCCCCcCCCCCCeEcCccCHHHHHHHHHcCchhcCHHHHHHHHHcCCeEEEecCCCCC-------
Confidence 689999999997 9999999 4 799999999999877 489999999999999999999999998775
Q ss_pred CCCceeEEecC
Q 035510 74 GDQVGTFIDRT 84 (88)
Q Consensus 74 g~~~GT~i~~~ 84 (88)
..||+|.+.
T Consensus 304 --~~GT~I~~~ 312 (475)
T PRK09181 304 --HPGTLITKD 312 (475)
T ss_pred --CCCeEEecC
Confidence 468998653
No 60
>cd04250 AAK_NAGK-C AAK_NAGK-C: N-Acetyl-L-glutamate kinase - cyclic (NAGK-C) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in some bacteria and photosynthetic organisms using the non-acetylated, cyclic route of ornithine biosynthesis. In this pathway, glutamate is first N-acetylated and then phosphorylated by NAGK to give phosphoryl NAG, which is converted to NAG-ornithine. There are two variants of this pathway. In one, typified by the pathway in Thermotoga maritima and Pseudomonas aeruginosa, the acetyl group is recycled by reversible transacetylation from acetylornithine to glutamate. The phosphorylation of NAG by NAGK is feedback inhibited by arginine. In photosynthetic organisms, NAGK is the target of the nitrogen-signaling protein PII. Hexameric formation of NAGK domains appears to be essential to both arginine inhibition and NAGK-PII complex formation. NAGK-C are members of the Amino A
Probab=99.52 E-value=4.3e-14 Score=99.91 Aligned_cols=80 Identities=21% Similarity=0.210 Sum_probs=65.7
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh-----CCCCcc--hHHHHHHHHhCCCC-EEEEeCCCcch-HHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS-----RGAIPM--DSTALSFCDENSIP-VVVFNLLEPGN-ISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~-----~g~~~~--d~~a~~la~~~gi~-v~I~ng~~~~~-i~~~ 71 (88)
+||.|+++|||||||+++|. ++++|++++++|+.+ ..+++| ++.++..+.++|++ ++|+||.+|++ +.++
T Consensus 191 ~A~~li~ltdv~Gv~~~~p~-~~~~i~~i~~~e~~~l~~~~~~tGgm~~Kl~~a~~a~~~g~~~v~I~~g~~~~~ll~~~ 269 (279)
T cd04250 191 KAEKLILLTDVAGVLDDPND-PGSLISEISLKEAEELIADGIISGGMIPKVEACIEALEGGVKAAHIIDGRVPHSLLLEI 269 (279)
T ss_pred CCCEEEEEECCcccccCCCC-CccccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHH
Confidence 58999999999999999885 478999999876543 245777 57777777788875 99999999996 5778
Q ss_pred hcCCCceeEE
Q 035510 72 ICGDQVGTFI 81 (88)
Q Consensus 72 l~g~~~GT~i 81 (88)
+.++..||+|
T Consensus 270 ~~~~~~GT~i 279 (279)
T cd04250 270 FTDEGIGTMI 279 (279)
T ss_pred hcCCCCccCC
Confidence 8888889975
No 61
>cd04235 AAK_CK AAK_CK: Carbamate kinase (CK) catalyzes both the ATP-phosphorylation of carbamate and carbamoyl phosphate (CP) utilization with the production of ATP from ADP and CP. Both CK (this CD) and nonhomologous CP synthetase synthesize carbamoyl phosphate, an essential precursor of arginine and pyrimidine bases, in the presence of ATP, bicarbonate, and ammonia. CK is a homodimer of 33 kDa subunits and is a member of the Amino Acid Kinase Superfamily (AAK).
Probab=99.50 E-value=1.1e-13 Score=99.65 Aligned_cols=78 Identities=24% Similarity=0.362 Sum_probs=62.3
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh------CCCCcc--hHH-HHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS------RGAIPM--DST-ALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~------~g~~~~--d~~-a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+||.|+++|||||||+.+++|++++|++++++|+.+ .+.++| ++. |.+++++.+.+++|++ ++++.++
T Consensus 222 ~Ad~LiilTdVdGVy~~~~~pda~~i~~Is~~e~~~l~~~g~~~tGGM~pKv~aA~~~a~~gg~~v~I~~---~~~i~~a 298 (308)
T cd04235 222 NADLLVILTDVDNVYINFGKPNQKALEQVTVEELEKYIEEGQFAPGSMGPKVEAAIRFVESGGKKAIITS---LENAEAA 298 (308)
T ss_pred CCCEEEEEecCCeEECCCCCCCCeEcCCcCHHHHHHHHhcCccccCCcHHHHHHHHHHHHhCCCeEEECC---HHHHHHH
Confidence 589999999999999965448899999999887643 145677 444 4577777778888877 7889999
Q ss_pred hcCCCceeEEe
Q 035510 72 ICGDQVGTFID 82 (88)
Q Consensus 72 l~g~~~GT~i~ 82 (88)
|.|+ .||+|.
T Consensus 299 L~G~-~GT~I~ 308 (308)
T cd04235 299 LEGK-AGTVIV 308 (308)
T ss_pred HCCC-CCeEEC
Confidence 9988 699883
No 62
>cd04248 AAK_AK-Ectoine AAK_AK-Ectoine: Amino Acid Kinase Superfamily (AAK), AK-Ectoine; this CD includes the N-terminal catalytic domain of the aspartokinase of the ectoine (1,4,5,6-tetrahydro-2-methyl pyrimidine-4-carboxylate) biosynthetic pathway found in Methylomicrobium alcaliphilum, Vibrio cholerae, and other various halotolerant or halophilic bacteria. Bacteria exposed to hyperosmotic stress accumulate organic solutes called 'compatible solutes' of which ectoine, a heterocyclic amino acid, is one. Apart from its osmotic function, ectoine also exhibits a protective effect on proteins, nucleic acids and membranes against a variety of stress factors. de novo synthesis of ectoine starts with the phosphorylation of L-aspartate and shares its first two enzymatic steps with the biosynthesis of amino acids of the aspartate family: aspartokinase and L-aspartate-semialdehyde dehydrogenase. The M. alcaliphilum and the V. cholerae aspartokinases are encoded on the ectABCask operon.
Probab=99.50 E-value=7.9e-14 Score=100.09 Aligned_cols=72 Identities=17% Similarity=0.235 Sum_probs=64.7
Q ss_pred CCcEEEEeeccCeecCCCCC--C--CceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--D--NNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~--~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+|+.+.+||||+ ||++||+ + +|+.|++++|+|+.+ .|..++++.+++++.+++||++|.|.++|+
T Consensus 226 ~A~ev~I~TDV~-i~taDPriV~~~~A~~i~~lsY~EA~ELA~~GakvLHP~ai~pa~~~~IPi~Vkntf~P~------- 297 (304)
T cd04248 226 GASEAIIHKEFH-LSSADPKLVGEDKARPIGRTNYDVADQLANLGMEAIHPKAAKGLRQAGIPLRVKNTFEPD------- 297 (304)
T ss_pred CCCEEEEECCCc-eecCCCCccCCCCceEeCccCHHHHHHHHHcChhhcCHHHHHHHHHcCCeEEEecCCCCC-------
Confidence 589999999996 9999999 4 689999999998876 488899999999999999999999998875
Q ss_pred CCCceeEEe
Q 035510 74 GDQVGTFID 82 (88)
Q Consensus 74 g~~~GT~i~ 82 (88)
+.||+|.
T Consensus 298 --~~GTlIt 304 (304)
T cd04248 298 --HPGTLIT 304 (304)
T ss_pred --CCCceeC
Confidence 5699884
No 63
>PRK00942 acetylglutamate kinase; Provisional
Probab=99.47 E-value=2.3e-13 Score=96.33 Aligned_cols=80 Identities=19% Similarity=0.168 Sum_probs=66.0
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---C--CCCcc--hHHHHHHHHhCCC-CEEEEeCCCcch-HHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---R--GAIPM--DSTALSFCDENSI-PVVVFNLLEPGN-ISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~--g~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~-i~~~ 71 (88)
+||.|+++|||||||++ ++++|++++++|+.+ . ..++| ++.++..+.++|+ +++|+|+..|++ +.++
T Consensus 195 ~A~~li~~tdv~Gv~~~----~~~~i~~i~~~e~~~~~~~~~~tggm~~Kl~~a~~~~~~gv~~v~I~~g~~~~~ll~~~ 270 (283)
T PRK00942 195 GAEKLILLTDVPGVLDD----KGQLISELTASEAEELIEDGVITGGMIPKVEAALDAARGGVRSVHIIDGRVPHALLLEL 270 (283)
T ss_pred CCCEEEEEECCcccccC----CCcccccCCHHHHHHHHHcCCCCCchHHHHHHHHHHHHhCCCEEEEeCCCCCchHHHHH
Confidence 58999999999999996 378999999876543 2 34666 5667766677876 699999999999 8999
Q ss_pred hcCCCceeEEecC
Q 035510 72 ICGDQVGTFIDRT 84 (88)
Q Consensus 72 l~g~~~GT~i~~~ 84 (88)
+.|+..||+|.+.
T Consensus 271 ~~~~~~GT~i~~~ 283 (283)
T PRK00942 271 FTDEGIGTMIVPD 283 (283)
T ss_pred hcCCCcceEEecC
Confidence 9999999999873
No 64
>PRK12686 carbamate kinase; Reviewed
Probab=99.45 E-value=3.4e-13 Score=97.19 Aligned_cols=77 Identities=19% Similarity=0.226 Sum_probs=61.6
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHHhh------CCCCcc--hHHHHHHHHh--CCCCEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELGS------RGAIPM--DSTALSFCDE--NSIPVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~------~g~~~~--d~~a~~la~~--~gi~v~I~ng~~~~~i~ 69 (88)
+||.|+++|||||||+. |+ |++++|++++.+++.. .++++| ++.|+..+.+ .+.+++|++ ++++.
T Consensus 224 ~Ad~LIiLTDVdGVy~~-~~~p~ak~I~~I~~~e~~~li~~g~~~tGGM~pKveAA~~av~~g~g~~viI~~---~~~i~ 299 (312)
T PRK12686 224 DADLLIILTGVENVFIN-FNKPNQQKLDDITVAEAKQYIAEGQFAPGSMLPKVEAAIDFVESGEGKKAIITS---LEQAK 299 (312)
T ss_pred CCCEEEEEeCchhhccC-CCCCCCeECCccCHHHHHHHhhCCCccCCCcHHHHHHHHHHHHhCCCCEEEEeC---chHHH
Confidence 58999999999999994 66 8899999999876543 145677 6777666554 367899987 78999
Q ss_pred HhhcCCCceeEEe
Q 035510 70 KAICGDQVGTFID 82 (88)
Q Consensus 70 ~~l~g~~~GT~i~ 82 (88)
++|.|+ .||+|.
T Consensus 300 ~aL~G~-~GT~I~ 311 (312)
T PRK12686 300 EALAGN-AGTHIT 311 (312)
T ss_pred HHhCCC-CCeEEe
Confidence 999988 799985
No 65
>PF00696 AA_kinase: Amino acid kinase family Match to Glutamate-5-kinases, C-terminal end of the alignment Match to Aspartate kinases; InterPro: IPR001048 This entry contains proteins with various specificities and includes the aspartate, glutamate and uridylate kinase families. In prokaryotes and plants the synthesis of the essential amino acids lysine and threonine is predominantly regulated by feed-back inhibition of aspartate kinase (AK) and dihydrodipicolinate synthase (DHPS). In Escherichia coli, thrA, metLM, and lysC encode aspartokinase isozymes that show feedback inhibition by threonine, methionine, and lysine, respectively []. The lysine-sensitive isoenzyme of aspartate kinase from spinach leaves has a subunit composition of 4 large and 4 small subunits []. In plants although the control of carbon fixation and nitrogen assimilation has been studied in detail, relatively little is known about the regulation of carbon and nitrogen flow into amino acids. The metabolic regulation of expression of an Arabidopsis thaliana aspartate kinase/homoserine dehydrogenase (AK/HSD) gene, which encodes two linked key enzymes in the biosynthetic pathway of aspartate family amino acids has been studied []. The conversion of aspartate into either the storage amino acid asparagine or aspartate family amino acids may be subject to a coordinated, reciprocal metabolic control, and this biochemical branch point is a part of a larger, coordinated regulatory mechanism of nitrogen and carbon storage and utilization.; GO: 0008652 cellular amino acid biosynthetic process; PDB: 2X2W_B 2WXB_B 1B7B_C 2J4L_F 2J4K_E 2J4J_F 2OGX_B 3QUO_A 3D40_A 3D41_A ....
Probab=99.44 E-value=2.4e-13 Score=93.18 Aligned_cols=61 Identities=30% Similarity=0.410 Sum_probs=52.9
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhhC------CCCcc---hHHHHHHHHhCCCCEEEEe
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGSR------GAIPM---DSTALSFCDENSIPVVVFN 61 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~~------g~~~~---d~~a~~la~~~gi~v~I~n 61 (88)
+|+.|+++|||||||++||+ |++++|++++++|+.+. .+++| +..|.+++++++++++|+|
T Consensus 171 ~A~~li~~tdV~Gv~~~dP~~~~~~~~i~~l~~~e~~~l~~~~~~~~~gm~~k~~~a~~~~~~~~~~v~I~n 242 (242)
T PF00696_consen 171 GADKLIFLTDVDGVYTADPRIVPDARLIPELSYDEAEELASKSGDVTGGMKPKHPAALEAAEEGGIPVHIIN 242 (242)
T ss_dssp TCSEEEEEESSSSEBSSSTTTSTTSEBESEEEHHHHHHHHHHTTSSTTTHHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CchhhhhhhhcCceeecCCCCCCCCeeeeEeeHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHcCCCcEEEeC
Confidence 58999999999999999999 89999999999887652 25555 5688999999999999987
No 66
>PLN02512 acetylglutamate kinase
Probab=99.43 E-value=7.9e-13 Score=94.97 Aligned_cols=82 Identities=15% Similarity=0.172 Sum_probs=65.6
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh-----CCCCcc--hHHHHHHHHhCCCC-EEEEeCCCcchHH-Hh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS-----RGAIPM--DSTALSFCDENSIP-VVVFNLLEPGNIS-KA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~-----~g~~~~--d~~a~~la~~~gi~-v~I~ng~~~~~i~-~~ 71 (88)
+||.|+++|||||||+++|. ++++|++++.+|+.+ ..+++| ++.++.-+.++|++ ++|++|..|+.+. ++
T Consensus 219 ~Ad~li~lTdV~GV~~~~~~-~~~lI~~i~~~e~~~l~~~~~vtGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~~l 297 (309)
T PLN02512 219 GAEKLILLTDVAGVLEDKDD-PGSLVKELDIKGVRKLIADGKIAGGMIPKVECCVRSLAQGVKTAHIIDGRVPHSLLLEI 297 (309)
T ss_pred CCCEEEEEeCCcceeCCCCC-CcCCCcccCHHHHHHHHhCCCCCCcHHHHHHHHHHHHHcCCCEEEEecCCCCChHHHHH
Confidence 58999999999999988643 478899998876543 246777 67777777788985 8999999998865 67
Q ss_pred hcCCCceeEEec
Q 035510 72 ICGDQVGTFIDR 83 (88)
Q Consensus 72 l~g~~~GT~i~~ 83 (88)
+.++..||+|.+
T Consensus 298 ~~~~~~GT~I~~ 309 (309)
T PLN02512 298 LTDEGAGTMITG 309 (309)
T ss_pred hcCCCCeeEEeC
Confidence 778888999974
No 67
>cd04238 AAK_NAGK-like AAK_NAGK-like: N-Acetyl-L-glutamate kinase (NAGK)-like . Included in this CD are the Escherichia coli and Pseudomonas aeruginosa type NAGKs which catalyze the phosphorylation of N-acetyl-L-glutamate (NAG) by ATP in the second step of arginine biosynthesis found in bacteria and photosynthetic organisms using either the acetylated, noncyclic (NC), or non-acetylated, cyclic (C) route of ornithine biosynthesis. Also included in this CD is a distinct group of uncharacterized (UC) bacterial and archeal NAGKs. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.42 E-value=4.6e-13 Score=93.43 Aligned_cols=77 Identities=21% Similarity=0.192 Sum_probs=62.2
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh-----CCCCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHHHhh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS-----RGAIPM--DSTALSFCDENSI-PVVVFNLLEPGNISKAI 72 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~-----~g~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~~~l 72 (88)
+||.|+++|||||||++ ++++|++++++|+.+ ...++| ++.++..+.++|+ +++|+||+.|+++.++|
T Consensus 171 ~a~~li~ltdv~Gv~~~----~~~~i~~i~~~e~~~~~~~~~~~ggm~~Kl~~a~~~~~~g~~~v~I~~g~~~~~l~~~l 246 (256)
T cd04238 171 KAEKLILLTDVPGVLDD----PGSLISELTPKEAEELIEDGVISGGMIPKVEAALEALEGGVRKVHIIDGRVPHSLLLEL 246 (256)
T ss_pred CCCEEEEEeCCccccCC----CCCccccCCHHHHHHHHHcCCCCCChHHHHHHHHHHHHhCCCEEEEeCCCCCcHHHHHH
Confidence 58999999999999997 278999998876543 135667 5667666667665 69999999999999999
Q ss_pred cC-CCceeEE
Q 035510 73 CG-DQVGTFI 81 (88)
Q Consensus 73 ~g-~~~GT~i 81 (88)
.| +..||+|
T Consensus 247 ~~~~~~GT~i 256 (256)
T cd04238 247 FTDEGIGTMI 256 (256)
T ss_pred hcCCCCCCCC
Confidence 98 5679975
No 68
>cd04249 AAK_NAGK-NC AAK_NAGK-NC: N-Acetyl-L-glutamate kinase - noncyclic (NAGK-NC) catalyzes the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis using the acetylated, noncyclic route of ornithine biosynthesis. There are two variants of this pathway. In one, typified by the pathway in Escherichia coli, glutamate is acetylated by acetyl-CoA and acetylornithine is deacylated hydrolytically. In this pathway, feedback inhibition by arginine occurs at the initial acetylation of glutamate and not at the phosphorylation of NAG by NAGK. Homodimeric NAGK-NC are members of the Amino Acid Kinase Superfamily (AAK).
Probab=99.42 E-value=6e-13 Score=92.76 Aligned_cols=76 Identities=18% Similarity=0.266 Sum_probs=59.5
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---C--CCCcc--hHH-HHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---R--GAIPM--DST-ALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~--g~~~~--d~~-a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
+|+ ++++|||||||+.|| ++|++++.+|+.+ . ..++| ++. |.+.+++.+++++|++|..|+.+.+++
T Consensus 169 ~A~-~i~ltdv~Gv~~~~~----~~i~~i~~~e~~~~~~~g~~~gGm~~kl~~a~~~~~~~~~~v~I~~g~~~~~l~~~l 243 (252)
T cd04249 169 NAD-LVLLSDVSGVLDADK----QLISELNAKQAAELIEQGVITDGMIVKVNAALDAAQSLRRGIDIASWQYPEQLTALL 243 (252)
T ss_pred CCC-EEEEeCCcccCCCCC----cCccccCHHHHHHHHhcCCCcCCcHHHHHHHHHHHHhCCCeEEEEeCCCccHHHHHH
Confidence 588 578999999999765 5888888765533 2 34566 344 455566677899999999999999999
Q ss_pred cCCCceeEE
Q 035510 73 CGDQVGTFI 81 (88)
Q Consensus 73 ~g~~~GT~i 81 (88)
.|+..||+|
T Consensus 244 ~g~~~GT~I 252 (252)
T cd04249 244 AGEPVGTKI 252 (252)
T ss_pred cCCCCCcCC
Confidence 999999976
No 69
>PRK12354 carbamate kinase; Reviewed
Probab=99.40 E-value=1.5e-12 Score=93.74 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=64.0
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh--CCCCcc--hHHHH-HHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS--RGAIPM--DSTAL-SFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~--~g~~~~--d~~a~-~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|+++|||||||+.+++|++++|++++.+|+.+ ...++| ++.|+ +.+++.+.+++|.+ ++.+.++|.|+
T Consensus 217 ~Ad~LiiLTdVdGVy~~~~~p~~k~i~~it~~e~~~~~f~~GgM~pKV~AA~~~~~~gg~~viI~~---~~~l~~al~G~ 293 (307)
T PRK12354 217 DADLLLILTDVDAVYLDWGKPTQRAIAQATPDELRELGFAAGSMGPKVEAACEFVRATGKIAGIGS---LEDIQAILAGE 293 (307)
T ss_pred CCCEEEEEeCCcceecCCCCCCCeECCCCCHHHHHhhCCCcCChHHHHHHHHHHHHhCCCEEEECC---HHHHHHHHCCC
Confidence 589999999999999975448899999999887654 356677 66665 66666677888853 67899999887
Q ss_pred CceeEEecCC
Q 035510 76 QVGTFIDRTG 85 (88)
Q Consensus 76 ~~GT~i~~~~ 85 (88)
.||+|.+.+
T Consensus 294 -~GT~I~~~~ 302 (307)
T PRK12354 294 -AGTRISPET 302 (307)
T ss_pred -CceEEecCC
Confidence 699998753
No 70
>PRK12454 carbamate kinase-like carbamoyl phosphate synthetase; Reviewed
Probab=99.39 E-value=1.9e-12 Score=93.40 Aligned_cols=78 Identities=19% Similarity=0.230 Sum_probs=62.4
Q ss_pred CCcEEEEeeccCeecCCCCC-CCceeeeccCHHHHhh------CCCCcc--hHHHH-HHHHhCCCCEEEEeCCCcchHHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELGS------RGAIPM--DSTAL-SFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~------~g~~~~--d~~a~-~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
+||.|+++|||||||+. ++ |++++|++++.+|+.+ ...++| ++.|+ +.+.+.+.+++|++ ++++.+
T Consensus 226 ~AD~LIiLTdVdGVy~~-~~~p~~~~i~~It~~e~~~~i~~g~~~~GgM~pKv~AA~~~v~~gg~~a~I~~---~~~i~~ 301 (313)
T PRK12454 226 NADIFIILTDVEKVYLN-YGKPDQKPLDKVTVEEAKKYYEEGHFKAGSMGPKILAAIRFVENGGKRAIIAS---LEKAVE 301 (313)
T ss_pred CCCEEEEEeCCceeeCC-CCCCCCeEccccCHHHHHHHHhcCCcCCCChHHHHHHHHHHHHcCCCeEEECc---hHHHHH
Confidence 58999999999999986 55 8899999999876543 134567 56665 66666678999985 788999
Q ss_pred hhcCCCceeEEec
Q 035510 71 AICGDQVGTFIDR 83 (88)
Q Consensus 71 ~l~g~~~GT~i~~ 83 (88)
+|.|+ .||+|.+
T Consensus 302 aL~G~-~GT~I~~ 313 (313)
T PRK12454 302 ALEGK-TGTRIIP 313 (313)
T ss_pred HHCCC-CCeEeCC
Confidence 99988 7999964
No 71
>CHL00202 argB acetylglutamate kinase; Provisional
Probab=99.36 E-value=4.4e-12 Score=90.12 Aligned_cols=81 Identities=11% Similarity=0.119 Sum_probs=64.3
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---C--CCCcc--hHHHHHHHHhCCCC-EEEEeCCCcch-HHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---R--GAIPM--DSTALSFCDENSIP-VVVFNLLEPGN-ISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~--g~~~~--d~~a~~la~~~gi~-v~I~ng~~~~~-i~~~ 71 (88)
+||.|+++|||||||+++..| .++|++++++|+.+ . .+++| ++.++..+.++|++ ++|++|..|+. +.++
T Consensus 194 ~Ad~li~lTdv~Gv~~~~~d~-~~~i~~i~~~e~~~l~~~g~~tGGM~~Kl~aa~~a~~~Gv~~v~I~~g~~~~~ll~el 272 (284)
T CHL00202 194 NAEKLILLTDTPGILADINDP-NSLISTLNIKEARNLASTGIISGGMIPKVNCCIRALAQGVEAAHIIDGKEKHALLLEI 272 (284)
T ss_pred CCCEEEEEeCChhhcCCCCCC-CCccccccHHHHHHHHhcCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHH
Confidence 589999999999999842112 47899998876533 2 45677 67888888888986 79999999997 5888
Q ss_pred hcCCCceeEEe
Q 035510 72 ICGDQVGTFID 82 (88)
Q Consensus 72 l~g~~~GT~i~ 82 (88)
+.++..||+|.
T Consensus 273 ~~~~g~GT~i~ 283 (284)
T CHL00202 273 LTEKGIGSMLV 283 (284)
T ss_pred hcCCCCceEEe
Confidence 88888999985
No 72
>PRK09411 carbamate kinase; Reviewed
Probab=99.30 E-value=9.5e-12 Score=89.15 Aligned_cols=78 Identities=22% Similarity=0.346 Sum_probs=62.5
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh--CCCCcc--hHHHH-HHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS--RGAIPM--DSTAL-SFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~--~g~~~~--d~~a~-~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+||.|+++|||||||+.+++|++++|++++.+++.. ...++| ++.|+ +.+.+.+.+++|.+ ++++.+++.|+
T Consensus 214 ~Ad~LIiLTDVdGV~~n~~~p~~~~I~~it~~e~~~~~~~~GgM~pKVeAA~~~v~~~g~~a~I~~---l~~~~~~l~G~ 290 (297)
T PRK09411 214 NADGLVILTDADAVYENWGTPQQRAIRHATPDELAPFAKADGAMGPKVTAVSGYVRSRGKPAWIGA---LSRIEETLAGE 290 (297)
T ss_pred CCCEEEEEeCchhhccCCCCCCCcCCCCcCHHHHHHhccCCCCcHHHHHHHHHHHHhCCCeEEECC---hhHHHHHHCCC
Confidence 589999999999999864448889999999887643 234556 77665 77777788998865 78889999988
Q ss_pred CceeEEe
Q 035510 76 QVGTFID 82 (88)
Q Consensus 76 ~~GT~i~ 82 (88)
.||+|.
T Consensus 291 -~GT~I~ 296 (297)
T PRK09411 291 -AGTCIS 296 (297)
T ss_pred -CCeEEe
Confidence 699985
No 73
>cd04251 AAK_NAGK-UC AAK_NAGK-UC: N-Acetyl-L-glutamate kinase - uncharacterized (NAGK-UC). This domain is similar to Escherichia coli and Pseudomonas aeruginosa NAGKs which catalyze the phosphorylation of the gamma-COOH group of N-acetyl-L-glutamate (NAG) by ATP in the second step of microbial arginine biosynthesis. These uncharacterized domain sequences are found in some bacteria (Deinococci and Chloroflexi) and archea and belong to the Amino Acid Kinase Superfamily (AAK).
Probab=99.26 E-value=1.4e-11 Score=86.42 Aligned_cols=74 Identities=28% Similarity=0.315 Sum_probs=61.1
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---CCCCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHHHhhcC
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---RGAIPM--DSTALSFCDENSI-PVVVFNLLEPGNISKAICG 74 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~g~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~~~l~g 74 (88)
+||.|+++|||+|||++ +++|++++.+|+.+ .-+++| ++.++..+.++|+ +++|++|..|+++.++|+|
T Consensus 178 ~A~~li~~tdv~Gv~~~-----~~~i~~i~~~e~~~l~~~~~ggm~~Kl~aa~~a~~~gv~~v~i~~g~~~~~l~~~l~g 252 (257)
T cd04251 178 KAERLILLTDVEGLYLD-----GRVIERITVSDAESLLEKAGGGMKRKLLAAAEAVEGGVREVVIGDARADSPISSALNG 252 (257)
T ss_pred CCCEEEEEeCChhheeC-----CcccCccCHHHHHHHHhhCCCchHHHHHHHHHHHHcCCCEEEEecCCCccHHHHHHcC
Confidence 58999999999999984 77999998876543 245666 7888888888888 6889999999999999987
Q ss_pred CCceeEE
Q 035510 75 DQVGTFI 81 (88)
Q Consensus 75 ~~~GT~i 81 (88)
+ ||.|
T Consensus 253 ~--gT~i 257 (257)
T cd04251 253 G--GTVI 257 (257)
T ss_pred C--CcCC
Confidence 4 8865
No 74
>PRK12352 putative carbamate kinase; Reviewed
Probab=99.26 E-value=2.3e-11 Score=87.93 Aligned_cols=79 Identities=19% Similarity=0.349 Sum_probs=61.5
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---C---CCCcc--hHHHH-HHHHhCCCCEEEEeCCCcchHHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---R---GAIPM--DSTAL-SFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~---g~~~~--d~~a~-~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+||.|+++|||+|||++++++++++|++++..|+.+ . ..++| ++.|+ +.+.+...+++|++ ++.+.++
T Consensus 228 ~AdkLI~LTDV~GV~~d~~~~~~~li~~lt~~e~~~li~~g~i~~GgM~pKl~aA~~al~~Gv~~v~I~~---~~~i~~a 304 (316)
T PRK12352 228 HADILVITTGVEKVCIHFGKPQQQALDRVDIATMTRYMQEGHFPPGSMLPKIIASLTFLEQGGKEVIITT---PECLPAA 304 (316)
T ss_pred CCCEEEEEeCchhhccCCCCCCcccccccCHHHHHHHHhcCCcCCCCCHHHHHHHHHHHHhCCCeEEEcc---hHHHHHH
Confidence 589999999999999876667788999999876533 2 23566 56665 55555556899986 8889999
Q ss_pred hcCCCceeEEec
Q 035510 72 ICGDQVGTFIDR 83 (88)
Q Consensus 72 l~g~~~GT~i~~ 83 (88)
|.|+ .||+|..
T Consensus 305 l~g~-~GT~I~~ 315 (316)
T PRK12352 305 LRGE-TGTHIIK 315 (316)
T ss_pred HcCC-CCeEEEe
Confidence 9988 8999965
No 75
>KOG0456 consensus Aspartate kinase [Amino acid transport and metabolism]
Probab=99.12 E-value=2.6e-11 Score=89.94 Aligned_cols=79 Identities=28% Similarity=0.362 Sum_probs=69.3
Q ss_pred CCcEEEEeeccCeecCCCCC--CCceeeeccCHHHHhh---CCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 1 HAEVVLKGTNVDGVYDCHSR--DNNATFEHISFRELGS---RGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~--~~a~~i~~i~~~e~~~---~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
++|.+-.|.|||||+++||+ |.|++++.++++|..+ .|++++++-..+.+.+..||+.|-|..+|-
T Consensus 297 ~~~EiQVWKdVDGv~T~DP~~~p~Ar~vp~lT~dEAaELaYfGaqVlHP~sM~~~~~~~IPvRvKN~~NP~--------- 367 (559)
T KOG0456|consen 297 GLDEIQVWKDVDGVLTCDPRIYPGARLVPYLTFDEAAELAYFGAQVLHPFSMRPAREGRIPVRVKNSYNPT--------- 367 (559)
T ss_pred CchhhhhhhhcCceEecCCccCCCccccCccCHHHHHHHHhhhhhhccccccchhhccCcceEeecCCCCC---------
Confidence 57788899999999999999 9999999999998766 488999999999999999999999987773
Q ss_pred CceeEEecCCCCC
Q 035510 76 QVGTFIDRTGRMS 88 (88)
Q Consensus 76 ~~GT~i~~~~~~~ 88 (88)
..||+|.|+..|+
T Consensus 368 ~~GTvI~~d~~m~ 380 (559)
T KOG0456|consen 368 APGTVITPDRDMS 380 (559)
T ss_pred CCceEeccchhhh
Confidence 5699999876653
No 76
>COG0548 ArgB Acetylglutamate kinase [Amino acid transport and metabolism]
Probab=99.09 E-value=8.9e-10 Score=78.01 Aligned_cols=81 Identities=23% Similarity=0.240 Sum_probs=65.3
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHh---hCC--CCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHHHh-
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELG---SRG--AIPM--DSTALSFCDENSI-PVVVFNLLEPGNISKA- 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~---~~g--~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~~~- 71 (88)
+|+.|+++|||+|||+..|++ .++++++.+|+. +.+ +++| ++.++.-|.++|+ +++|.||..++.+...
T Consensus 176 kAekLi~ltdv~Gvl~~~~~~--s~i~~~~~~~~~~li~~~~i~~GMi~Kv~~a~~A~~~Gv~~v~ii~g~~~~~ll~eL 253 (265)
T COG0548 176 KAEKLILLTDVPGVLDDKGDP--SLISELDAEEAEELIEQGIITGGMIPKVEAALEALESGVRRVHIISGRVPHSLLLEL 253 (265)
T ss_pred CCCeEEEEeCCcccccCCCCc--eeeccCCHHHHHHHHhcCCccCccHHHHHHHHHHHHhCCCeEEEecCCCcchHHHHH
Confidence 589999999999999987754 788888876554 334 5666 6788888889999 7999999999996664
Q ss_pred hcCCCceeEEec
Q 035510 72 ICGDQVGTFIDR 83 (88)
Q Consensus 72 l~g~~~GT~i~~ 83 (88)
+.+..+||.|.+
T Consensus 254 Ft~~giGT~i~~ 265 (265)
T COG0548 254 FTRDGIGTMIVR 265 (265)
T ss_pred hcCCCcceEecC
Confidence 567788999864
No 77
>PRK05279 N-acetylglutamate synthase; Validated
Probab=98.99 E-value=1.5e-09 Score=80.83 Aligned_cols=80 Identities=18% Similarity=0.163 Sum_probs=62.9
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh------CC--CCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS------RG--AIPM--DSTALSFCDENSI-PVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~------~g--~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~ 69 (88)
+|+.|+++|||+|||+. ++++|++++.+++.+ .+ +++| ++.++.-+.++|+ +++|+++..|+++.
T Consensus 201 ~a~~lv~ltdv~GV~~~----~~~~i~~i~~~~~~~~~~~~~~~~~~ggM~~Kv~~a~~~~~~gv~~v~i~~~~~~~~l~ 276 (441)
T PRK05279 201 KADKLIFFTESQGVLDE----DGELIRELSPNEAQALLEALEDGDYNSGTARFLRAAVKACRGGVRRSHLISYAEDGALL 276 (441)
T ss_pred CCCEEEEEECCCCccCC----CCchhhhCCHHHHHHHHhhhhcCCCCccHHHHHHHHHHHHHcCCCEEEEecCCCCcHHH
Confidence 58999999999999964 367899988765432 11 4677 6677666667788 89999999999999
Q ss_pred HhhcCC-CceeEEecC
Q 035510 70 KAICGD-QVGTFIDRT 84 (88)
Q Consensus 70 ~~l~g~-~~GT~i~~~ 84 (88)
..|.++ ..||.|.+.
T Consensus 277 ~~l~~~~g~GT~i~~~ 292 (441)
T PRK05279 277 QELFTRDGIGTMIVME 292 (441)
T ss_pred HHHhcCCCCceEEecC
Confidence 998765 579999875
No 78
>cd04237 AAK_NAGS-ABP AAK_NAGS-ABP: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the arginine-biosynthesis pathway (ABP) found in gamma- and beta-proteobacteria and higher plant chloroplasts. Domain architecture of these NAGS consisted of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal NAG synthase, acetyltransferase (ArgA) domain. Both bacterial and plant sequences in this CD have a conserved N-terminal extension; a similar sequence in the NAG kinases of the cyclic arginine-biosynthesis pathway has been implicated in feedback inhibition sensing. Plant sequences also have an N-terminal chloroplast transit peptide and an insert (approx. 70 residues) in the C-terminal region of ArgB. Members of this CD belong to the Amino Acid Kinase Superfamily (AAK).
Probab=98.98 E-value=2.1e-09 Score=76.33 Aligned_cols=77 Identities=19% Similarity=0.213 Sum_probs=60.4
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---CC---CCcc--hHHHHHHHHhCCC-CEEEEeCCCcchHHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---RG---AIPM--DSTALSFCDENSI-PVVVFNLLEPGNISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~g---~~~~--d~~a~~la~~~gi-~v~I~ng~~~~~i~~~ 71 (88)
+|+.|+++|||+|||+. +++++++++.+|+.+ .+ +++| ++.++.-+.+.|+ +++|+++..|+.+..-
T Consensus 194 ~a~klv~ltdv~GV~~~----~~~~i~~i~~~e~~~l~~~~~~~~ggM~~Kv~~a~~a~~~Gv~~v~I~~~~~~~~ll~e 269 (280)
T cd04237 194 KADKLIFLTDGPGLLDD----DGELIRELTAQEAEALLETGALLTNDTARLLQAAIEACRGGVPRVHLISYAEDGALLLE 269 (280)
T ss_pred CCCEEEEEeCCCcccCC----CCCccccCCHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence 58999999999999974 367899998755432 22 5778 6777777778899 8999999999998887
Q ss_pred hc-CCCceeEE
Q 035510 72 IC-GDQVGTFI 81 (88)
Q Consensus 72 l~-g~~~GT~i 81 (88)
+. .+..||.|
T Consensus 270 lft~~g~GT~i 280 (280)
T cd04237 270 LFTRDGVGTLI 280 (280)
T ss_pred HhcCCCCCCcC
Confidence 65 45779975
No 79
>TIGR01890 N-Ac-Glu-synth amino-acid N-acetyltransferase. This model represents a clade of amino-acid N-acetyltransferases acting mainly on glutamate in the first step of the "acetylated" ornithine biosynthesis pathway. For this reason it is also called N-acetylglutamate synthase. The enzyme may also act on aspartate.
Probab=98.83 E-value=1.3e-08 Score=75.71 Aligned_cols=81 Identities=17% Similarity=0.171 Sum_probs=61.6
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHh---hCCCCcc---hHHHHHHHHhCCC-CEEEEeCCCcchHHHhhc
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELG---SRGAIPM---DSTALSFCDENSI-PVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~---~~g~~~~---d~~a~~la~~~gi-~v~I~ng~~~~~i~~~l~ 73 (88)
+|+.|+++|||+|||+. ++++|++++.+|+. +...++| ++.++.-|.+.|+ +++|++|..|+.+...|.
T Consensus 193 ~a~kli~ltdv~Gv~~~----~g~~i~~i~~~~~~~l~~~~~~~~~~~kl~~a~~a~~~gv~~v~i~~g~~~~~l~~el~ 268 (429)
T TIGR01890 193 KADKLIYFTLSPGISDP----DGTLAAELSPQEVESLAERLGSETTRRLLSAAVKACRGGVHRSHIVSYAEDGSLLQELF 268 (429)
T ss_pred CCCEEEEEeCCCcccCC----CCCCcccCCHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCeEEEECCCCCcHHHHHHh
Confidence 58999999999999974 26788998865543 2222232 6777777778885 799999999999998874
Q ss_pred -CCCceeEEecCC
Q 035510 74 -GDQVGTFIDRTG 85 (88)
Q Consensus 74 -g~~~GT~i~~~~ 85 (88)
.+..||.|.+..
T Consensus 269 ~~~g~GT~i~~d~ 281 (429)
T TIGR01890 269 TRDGIGTSISKEA 281 (429)
T ss_pred cCCCCcceEeccc
Confidence 566899998754
No 80
>TIGR00761 argB acetylglutamate kinase. This model describes N-acetylglutamate kinases (ArgB) of many prokaryotes and the N-acetylglutamate kinase domains of multifunctional proteins from yeasts. This enzyme is the second step in the "acetylated" ornithine biosynthesis pathway. A related group of enzymes representing the first step of the pathway contain a homologous domain and are excluded from this model.
Probab=98.69 E-value=4.8e-08 Score=67.20 Aligned_cols=55 Identities=20% Similarity=0.229 Sum_probs=44.0
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh---CC--CCcc--hHHHHHHHHhCCCCEE
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS---RG--AIPM--DSTALSFCDENSIPVV 58 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~g--~~~~--d~~a~~la~~~gi~v~ 58 (88)
+||.|+++|||||||++|| .++|++++.+|+.+ .+ +++| ++.++..+.++|++.+
T Consensus 168 ~A~~li~ltdv~Gv~~~d~---~~~i~~i~~~e~~~l~~~~~~tggm~~Kl~~a~~a~~~gv~~v 229 (231)
T TIGR00761 168 GAEKLVLLTDVPGILNGDG---QSLISEIPLEEIEQLIEQGIITGGMIPKVNAALEALRGGVKSV 229 (231)
T ss_pred CCCEEEEEECCCCeecCCC---CeeccccCHHHHHHHHHcCCCCCchHHHHHHHHHHHHcCCCEE
Confidence 5899999999999999987 47899999876543 23 5777 6788888888898754
No 81
>COG0549 ArcC Carbamate kinase [Amino acid transport and metabolism]
Probab=98.66 E-value=8.3e-08 Score=68.72 Aligned_cols=79 Identities=24% Similarity=0.423 Sum_probs=62.4
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHHHHhh----C----CCCcchHHH-HHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFRELGS----R----GAIPMDSTA-LSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~----~----g~~~~d~~a-~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+||.|+++||||+||-.=.+|+-+.+++++.+|+.+ . |+.+-+++| ..++++.|-+.+|.+ .+++..+
T Consensus 225 ~AD~liILTdVd~Vy~n~gkp~q~~L~~v~~~e~~~yl~eg~Fa~GSM~PKVeAai~Fv~~~gk~A~Its---Le~~~~~ 301 (312)
T COG0549 225 DADLLIILTDVDAVYVNFGKPNQQALDRVTVDEMEKYLAEGQFAAGSMGPKVEAAISFVENTGKPAIITS---LENAEAA 301 (312)
T ss_pred cCCEEEEEeccchheecCCCccchhhcccCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHcCCCceEECc---HHHHHHH
Confidence 599999999999999643337788999999988533 1 444447765 778888888999987 7899999
Q ss_pred hcCCCceeEEec
Q 035510 72 ICGDQVGTFIDR 83 (88)
Q Consensus 72 l~g~~~GT~i~~ 83 (88)
|.|+. ||.|.+
T Consensus 302 l~g~~-GT~I~~ 312 (312)
T COG0549 302 LEGKA-GTVIVP 312 (312)
T ss_pred hccCC-CcEecC
Confidence 99875 999864
No 82
>cd04252 AAK_NAGK-fArgBP AAK_NAGK-fArgBP: N-Acetyl-L-glutamate kinase (NAGK) of the fungal arginine-biosynthetic pathway (fArgBP). The nuclear-encoded, mitochondrial polyprotein precursor with an N-terminal NAGK (ArgB) domain (this CD), a central DUF619 domain, and a C-terminal reductase domain (ArgC, N-Acetylglutamate Phosphate Reductase, NAGPR). The precursor is cleaved in the mitochondria into two distinct enzymes (NAGK-DUF619 and NAGPR). Native molecular weights of these proteins indicate that the kinase is an octamer whereas the reductase is a dimer. This CD also includes some gamma-proteobacteria (Xanthomonas and Xylella) NAG kinases with an N-terminal NAGK (ArgB) domain (this CD) and a C-terminal DUF619 domain. The DUF619 domain is described as a putative distant homolog of the acetyltransferase, ArgA, predicted to function in NAG synthase association in fungi. Eukaryotic sequences have an N-terminal mitochondrial transit peptide. Members of this NAG kinase domain CD belong to th
Probab=98.42 E-value=9.1e-07 Score=61.81 Aligned_cols=74 Identities=15% Similarity=0.208 Sum_probs=51.1
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCHH----HHhhCC--CCcc--hHHHHHHHHhC---CCCEEEEeCCCcchHH
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISFR----ELGSRG--AIPM--DSTALSFCDEN---SIPVVVFNLLEPGNIS 69 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~~----e~~~~g--~~~~--d~~a~~la~~~---gi~v~I~ng~~~~~i~ 69 (88)
+|+.|+++|||+|||+. +.++|++++.. ++.+.+ +++| ++.++.-|.+. ...++|++ ++.+.
T Consensus 163 ~a~kli~ltdv~GV~~~----~g~~i~~i~~~~~~~~l~~~~~vtgGM~~Kl~~~~~~~~~~~~~~~v~i~~---~~~ll 235 (248)
T cd04252 163 EPLKIVFLNETGGLLDG----TGKKISAINLDEEYDDLMKQPWVKYGTKLKIKEIKELLDTLPRSSSVSITS---PDDLQ 235 (248)
T ss_pred CCCeEEEEECCcccCCC----CCCcccccCHHHHHHHHHHcCCcCCchHHHHHHHHHHHHhCCCceEEEEEC---CchHH
Confidence 58999999999999975 25688888753 233322 4567 56666666665 44677777 57777
Q ss_pred HhhcC-CCceeEE
Q 035510 70 KAICG-DQVGTFI 81 (88)
Q Consensus 70 ~~l~g-~~~GT~i 81 (88)
..|-+ +..||.|
T Consensus 236 ~elf~~~g~GT~i 248 (248)
T cd04252 236 KELFTHSGAGTLI 248 (248)
T ss_pred HHHhcCCCCCccC
Confidence 76654 4589975
No 83
>PRK04531 acetylglutamate kinase; Provisional
Probab=98.35 E-value=3.2e-06 Score=62.94 Aligned_cols=83 Identities=16% Similarity=0.182 Sum_probs=58.7
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCH-HH---HhhC--CCCcc--hHHHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISF-RE---LGSR--GAIPM--DSTALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~-~e---~~~~--g~~~~--d~~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
+|+.|+++|||+|||+.+ +++|++++. ++ +.+. -+++| ++.++.-|.+..-.++++.+..|+++...|
T Consensus 162 ~a~KLIfltdv~GV~d~~----g~~i~~i~~~~e~~~l~~~~~vtgGM~~KL~~a~~al~~~~~~~~V~i~~~~~Ll~eL 237 (398)
T PRK04531 162 QPYKIIFLTGTGGLLDAD----GKLISSINLSTEYDHLMQQPWINGGMKLKLEQIKELLDRLPLESSVSITSPSDLAKEL 237 (398)
T ss_pred CCCEEEEEECCCCccCCC----CCCcccCCHHHHHHHHHhcCCCCccHHHHHHHHHHHHhCCCcEEEEEecCCCHHHHHH
Confidence 589999999999999853 668888875 23 2222 24566 566655555543467777778899999887
Q ss_pred cCC-CceeEEecCCCC
Q 035510 73 CGD-QVGTFIDRTGRM 87 (88)
Q Consensus 73 ~g~-~~GT~i~~~~~~ 87 (88)
.++ ..||.|....+|
T Consensus 238 ft~~G~GT~I~~g~~i 253 (398)
T PRK04531 238 FTHKGSGTLVRRGERI 253 (398)
T ss_pred ccCCCCCeEEecCCce
Confidence 654 579999876554
No 84
>cd04236 AAK_NAGS-Urea AAK_NAGS-Urea: N-acetylglutamate (NAG) kinase-like domain of the NAG Synthase (NAGS) of the urea cycle found in animals. Ureogenic NAGS is a mitochondrial enzyme catalyzing the formation of NAG from acetylcoenzyme A and L-glutamate; NAG is an essential allosteric activator of carbamylphosphate synthase I, the first and rate limiting enzyme of the urea cycle. Ureogenic NAGS activity is dependent on the concentration of glutamate (substrate) and arginine (activator). Domain architecture of ureogenic NAGS consists of an N-terminal NAG kinase-like (ArgB) domain (this CD) and a C-terminal DUF619 domain. Members of this CD belong to the protein superfamily, the Amino Acid Kinase Family (AAKF).
Probab=98.13 E-value=6.4e-06 Score=58.65 Aligned_cols=74 Identities=12% Similarity=0.149 Sum_probs=51.9
Q ss_pred CCcEEEEeeccCeecCCCCCCCceeeeccCH-HHH---hhCC--CCcc-----hHHHHHHHHhCCCCEEEEeCCCcch-H
Q 035510 1 HAEVVLKGTNVDGVYDCHSRDNNATFEHISF-REL---GSRG--AIPM-----DSTALSFCDENSIPVVVFNLLEPGN-I 68 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~dP~~~a~~i~~i~~-~e~---~~~g--~~~~-----d~~a~~la~~~gi~v~I~ng~~~~~-i 68 (88)
+|+.|+++||++|||+. +.++|++++. .|+ .+.| +++| ++.++--+..+|.+++|++ |+. +
T Consensus 186 ~A~KLIfltd~~GV~~~----~g~lI~~l~~~~e~~~li~~g~i~gGm~~ki~ki~~~l~~l~~g~sv~I~~---~~~ll 258 (271)
T cd04236 186 QPIKVIFLNRSGGLRDQ----KHKVLPQVHLPADLPSLSDAEWLSETEQNRIQDIATLLNALPSMSSAVITS---AETLL 258 (271)
T ss_pred CCCEEEEEeCCcceECC----CCCCccccCcHHHHHHHHhCCEEcCCeeechHHHHHHHHhcccCCeEEEeC---hHHHH
Confidence 58999999999999984 2568888884 443 3332 4556 3455555567899999997 444 4
Q ss_pred HHhhcCCCceeEE
Q 035510 69 SKAICGDQVGTFI 81 (88)
Q Consensus 69 ~~~l~g~~~GT~i 81 (88)
..++.....||.|
T Consensus 259 ~elft~~g~GT~~ 271 (271)
T cd04236 259 TELFSHKGSGTLF 271 (271)
T ss_pred HHHhccCCCCCcC
Confidence 4556666779976
No 85
>COG1778 Low specificity phosphatase (HAD superfamily) [General function prediction only]
Probab=96.08 E-value=0.012 Score=39.24 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=43.3
Q ss_pred EeeccCeecCCCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 7 KGTNVDGVYDCHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 7 ~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+.+|||||++. .+++-.-.-+|+. ...+-|-.++++.+++||++-|+.|++...+.+-..
T Consensus 11 li~DVDGvLTD-----G~ly~~~~Gee~K--aFnv~DG~Gik~l~~~Gi~vAIITGr~s~ive~Ra~ 70 (170)
T COG1778 11 LILDVDGVLTD-----GKLYYDENGEEIK--AFNVRDGHGIKLLLKSGIKVAIITGRDSPIVEKRAK 70 (170)
T ss_pred EEEeccceeec-----CeEEEcCCCceee--eeeccCcHHHHHHHHcCCeEEEEeCCCCHHHHHHHH
Confidence 45799999985 5555444344332 233457778999999999999999999887776554
No 86
>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit. Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.
Probab=95.50 E-value=0.061 Score=35.73 Aligned_cols=60 Identities=15% Similarity=-0.000 Sum_probs=37.9
Q ss_pred EeeccCeecCCCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 7 KGTNVDGVYDCHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 7 ~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+..|||||++.+ +.+=.-+-.|+. ....-|..|++++++.|+++.|+++.....+.+.+.
T Consensus 10 ~v~d~dGv~tdg-----~~~~~~~g~~~~--~~~~~D~~~~~~L~~~Gi~laIiT~k~~~~~~~~l~ 69 (169)
T TIGR02726 10 VILDVDGVMTDG-----RIVINDEGIESR--NFDIKDGMGVIVLQLCGIDVAIITSKKSGAVRHRAE 69 (169)
T ss_pred EEEeCceeeECC-----eEEEcCCCcEEE--EEecchHHHHHHHHHCCCEEEEEECCCcHHHHHHHH
Confidence 456999999852 222111111110 122347888888888899998888887777776665
No 87
>PLN02825 amino-acid N-acetyltransferase
Probab=95.50 E-value=0.063 Score=41.55 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=30.0
Q ss_pred HHHHHHHhCCC-CEEEEeCCCcchHHHh-hcCCCceeEEecC
Q 035510 45 TALSFCDENSI-PVVVFNLLEPGNISKA-ICGDQVGTFIDRT 84 (88)
Q Consensus 45 ~a~~la~~~gi-~v~I~ng~~~~~i~~~-l~g~~~GT~i~~~ 84 (88)
.++-.|-+.|+ +++++++...+.+..= +.-+.+||.|..+
T Consensus 324 ~~a~~a~~~gv~r~hl~~~~~~gall~elft~dg~gt~i~~~ 365 (515)
T PLN02825 324 AAAAFVCRGGVQRVHLLDGTIEGVLLLELFTRDGMGTMIASD 365 (515)
T ss_pred HHHHHHHHcCCCeEEeccCCCCchHHHHhhccCCceeEeccC
Confidence 34444557888 5999999998888764 4567889999764
No 88
>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family. The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.
Probab=90.64 E-value=1.3 Score=28.52 Aligned_cols=24 Identities=25% Similarity=0.254 Sum_probs=14.6
Q ss_pred EEeeccCeecCCCCC---CCceeeecc
Q 035510 6 LKGTNVDGVYDCHSR---DNNATFEHI 29 (88)
Q Consensus 6 i~~tdVdGvy~~dP~---~~a~~i~~i 29 (88)
++++|+||++..++. ++.+.+..+
T Consensus 3 ~~~~D~Dgtl~~~~~~~~~~~~~~~~~ 29 (154)
T TIGR01670 3 LLILDVDGVLTDGKIYYTNNGEEIKAF 29 (154)
T ss_pred EEEEeCceeEEcCeEEECCCCcEEEEE
Confidence 356799999986433 334444443
No 89
>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional
Probab=87.31 E-value=1.1 Score=29.61 Aligned_cols=13 Identities=38% Similarity=0.468 Sum_probs=10.3
Q ss_pred EEeeccCeecCCC
Q 035510 6 LKGTNVDGVYDCH 18 (88)
Q Consensus 6 i~~tdVdGvy~~d 18 (88)
++++|+||++..+
T Consensus 23 li~~D~Dgtl~~~ 35 (183)
T PRK09484 23 LLICDVDGVFSDG 35 (183)
T ss_pred EEEEcCCeeeecC
Confidence 5678999998853
No 90
>PRK10187 trehalose-6-phosphate phosphatase; Provisional
Probab=71.89 E-value=10 Score=26.59 Aligned_cols=57 Identities=7% Similarity=-0.059 Sum_probs=33.6
Q ss_pred EEEEeeccCeecCCCCC-CCceeeeccCHHHHhhCCCCcchHHHHHHHHh-CCCCEEEEeCCCcchHHHhhc
Q 035510 4 VVLKGTNVDGVYDCHSR-DNNATFEHISFRELGSRGAIPMDSTALSFCDE-NSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 4 ~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~-~gi~v~I~ng~~~~~i~~~l~ 73 (88)
.+++++|.||=+-..-. |+...+. .. . ..+++.+.+ .|+.+.|++|+....+.+++.
T Consensus 14 ~~li~~D~DGTLl~~~~~p~~~~i~---~~-~---------~~~L~~L~~~~g~~v~i~SGR~~~~~~~~~~ 72 (266)
T PRK10187 14 NYAWFFDLDGTLAEIKPHPDQVVVP---DN-I---------LQGLQLLATANDGALALISGRSMVELDALAK 72 (266)
T ss_pred CEEEEEecCCCCCCCCCCcccccCC---HH-H---------HHHHHHHHhCCCCcEEEEeCCCHHHHHHhcC
Confidence 35667899998763211 2222221 11 1 123343343 789999999999988888764
No 91
>PRK14501 putative bifunctional trehalose-6-phosphate synthase/HAD hydrolase subfamily IIB; Provisional
Probab=66.18 E-value=22 Score=28.59 Aligned_cols=59 Identities=14% Similarity=0.049 Sum_probs=35.5
Q ss_pred CcEEEEeeccCeecCCCCC-CCceeeeccCHHHHhhCCCCcchHHHHHHHHh-CCCCEEEEeCCCcchHHHhhc
Q 035510 2 AEVVLKGTNVDGVYDCHSR-DNNATFEHISFRELGSRGAIPMDSTALSFCDE-NSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 2 ad~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~-~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+..-++++|.||-....-. +....+ + .+ + ..+++.+.+ .|+.++|++|+....+.+.+.
T Consensus 490 ~~~rLi~~D~DGTL~~~~~~~~~~~~---~-~~--------~-~~~L~~L~~d~g~~V~ivSGR~~~~l~~~~~ 550 (726)
T PRK14501 490 ASRRLLLLDYDGTLVPFAPDPELAVP---D-KE--------L-RDLLRRLAADPNTDVAIISGRDRDTLERWFG 550 (726)
T ss_pred ccceEEEEecCccccCCCCCcccCCC---C-HH--------H-HHHHHHHHcCCCCeEEEEeCCCHHHHHHHhC
Confidence 4456778899998874211 111100 0 00 1 133444444 599999999999999988765
No 92
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=65.04 E-value=9.5 Score=22.57 Aligned_cols=30 Identities=10% Similarity=0.117 Sum_probs=24.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..+-+.|+++++|++.++......|.++|.
T Consensus 65 ~~vk~~akk~~ip~~~~~~~~~~~l~~~l~ 94 (97)
T PF10087_consen 65 WKVKKAAKKYGIPIIYSRSRGVSSLERALE 94 (97)
T ss_pred HHHHHHHHHcCCcEEEECCCCHHHHHHHHH
Confidence 355778899999999999888888888775
No 93
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=60.33 E-value=25 Score=25.26 Aligned_cols=44 Identities=18% Similarity=0.249 Sum_probs=32.1
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCceeEEecCCCC
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAICGDQVGTFIDRTGRM 87 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~GT~i~~~~~~ 87 (88)
..|.++....|+|++|++-.---...+.+.....|-+|.+-.+|
T Consensus 77 ~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~DpM 120 (277)
T PRK00994 77 KKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKADPM 120 (277)
T ss_pred hHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEecCcc
Confidence 45778888899999988754333455778777889888776555
No 94
>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=59.76 E-value=22 Score=24.62 Aligned_cols=54 Identities=17% Similarity=0.082 Sum_probs=34.3
Q ss_pred cEEEEeeccCeecCCCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 3 EVVLKGTNVDGVYDCHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 3 d~li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+..++++|+||=.-. ++ +. ++.. -..+++-+++.|+++++++|+....+..++.
T Consensus 6 ~~~lI~~DlDGTLL~-~~---~~---i~~~----------~~~ai~~l~~~Gi~~viaTGR~~~~i~~~~~ 59 (271)
T PRK03669 6 DPLLIFTDLDGTLLD-SH---TY---DWQP----------AAPWLTRLREAQVPVILCSSKTAAEMLPLQQ 59 (271)
T ss_pred CCeEEEEeCccCCcC-CC---Cc---CcHH----------HHHHHHHHHHcCCeEEEEcCCCHHHHHHHHH
Confidence 345678899997653 11 11 1111 2345666678899999999988877776654
No 95
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=59.18 E-value=11 Score=26.77 Aligned_cols=34 Identities=29% Similarity=0.614 Sum_probs=28.0
Q ss_pred CCCCEEEEeCCCcchHHHhhc---CCCceeEEecCCC
Q 035510 53 NSIPVVVFNLLEPGNISKAIC---GDQVGTFIDRTGR 86 (88)
Q Consensus 53 ~gi~v~I~ng~~~~~i~~~l~---g~~~GT~i~~~~~ 86 (88)
.++|++|-+|-.++|+.+.|. |--+||+|+.++.
T Consensus 199 ~~~PVlvGSGvt~~Ni~~~l~~ADG~IVGS~~K~~G~ 235 (254)
T PF03437_consen 199 VPVPVLVGSGVTPENIAEYLSYADGAIVGSYFKKDGK 235 (254)
T ss_pred CCCCEEEecCCCHHHHHHHHHhCCEEEEeeeeeeCCE
Confidence 459999999999999999985 3456999987654
No 96
>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional
Probab=57.99 E-value=20 Score=24.72 Aligned_cols=30 Identities=10% Similarity=0.008 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++-+++.|+.+.+++|+....+..++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (272)
T PRK15126 25 LSTLARLRERDITLTFATGRHVLEMQHILG 54 (272)
T ss_pred HHHHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 355666677888888888888777776654
No 97
>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein. This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.
Probab=57.20 E-value=14 Score=24.58 Aligned_cols=29 Identities=17% Similarity=0.165 Sum_probs=21.7
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
.+++.+++.|+++.+++|+.+..+..+++
T Consensus 23 ~~l~~l~~~gi~~~i~TgR~~~~~~~~~~ 51 (221)
T TIGR02463 23 PWLTRLQEAGIPVILCTSKTAAEVEYLQK 51 (221)
T ss_pred HHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 45555677889999999888877776654
No 98
>PRK10976 putative hydrolase; Provisional
Probab=56.68 E-value=27 Score=23.84 Aligned_cols=30 Identities=10% Similarity=0.011 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++-+++.|+.+.|++|+.+..+..++.
T Consensus 25 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 54 (266)
T PRK10976 25 KETLKLLTARGIHFVFATGRHHVDVGQIRD 54 (266)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 355666778888888888888777766554
No 99
>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional
Probab=56.19 E-value=23 Score=24.13 Aligned_cols=30 Identities=17% Similarity=0.022 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++-+++.|+.+.|++|+.+..+..++.
T Consensus 26 ~~ai~~~~~~G~~~~iaTGR~~~~~~~~~~ 55 (272)
T PRK10530 26 LEALARAREAGYKVIIVTGRHHVAIHPFYQ 55 (272)
T ss_pred HHHHHHHHHCCCEEEEEcCCChHHHHHHHH
Confidence 356666778889999999988777666543
No 100
>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family. This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta
Probab=56.16 E-value=22 Score=24.35 Aligned_cols=30 Identities=17% Similarity=0.110 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..+++.+++.|+++.+++|+.+..+..++.
T Consensus 22 ~~~i~~l~~~g~~~~~~TgR~~~~~~~~~~ 51 (256)
T TIGR01486 22 KEVLERLQELGIPVIPCTSKTAAEVEYLRK 51 (256)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 355666677899999999988887777664
No 101
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=55.09 E-value=8.3 Score=27.42 Aligned_cols=14 Identities=43% Similarity=0.553 Sum_probs=12.1
Q ss_pred CCcEEEEeeccCee
Q 035510 1 HAEVVLKGTNVDGV 14 (88)
Q Consensus 1 ~ad~li~~tdVdGv 14 (88)
+||+++++||+|-+
T Consensus 57 GADlvlIATDaD~~ 70 (290)
T COG4026 57 GADLVLIATDADRV 70 (290)
T ss_pred cCCEEEEeecCcch
Confidence 69999999999854
No 102
>COG0434 SgcQ Predicted TIM-barrel enzyme [General function prediction only]
Probab=54.84 E-value=27 Score=25.09 Aligned_cols=44 Identities=32% Similarity=0.443 Sum_probs=33.8
Q ss_pred chHHHHHHHHhC-CCCEEEEeCCCcchHHHhhc---CCCceeEEecCC
Q 035510 42 MDSTALSFCDEN-SIPVVVFNLLEPGNISKAIC---GDQVGTFIDRTG 85 (88)
Q Consensus 42 ~d~~a~~la~~~-gi~v~I~ng~~~~~i~~~l~---g~~~GT~i~~~~ 85 (88)
.|+.=++++++. ..|+++-+|-.++|+..+|+ |--+||+++..+
T Consensus 192 ~d~~el~~a~~~~~~pvlvGSGv~~eN~~~~l~~adG~IvgT~lK~~G 239 (263)
T COG0434 192 PDLEELKLAKEAVDTPVLVGSGVNPENIEELLKIADGVIVGTSLKKGG 239 (263)
T ss_pred CCHHHHHHHHhccCCCEEEecCCCHHHHHHHHHHcCceEEEEEEccCC
Confidence 466556666543 68999999999999999876 445699998765
No 103
>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]
Probab=53.79 E-value=26 Score=24.00 Aligned_cols=30 Identities=17% Similarity=0.080 Sum_probs=22.9
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhcC
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAICG 74 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~g 74 (88)
.+++.+++.|+++.|+.|+....+..++..
T Consensus 27 ~al~~~~~~g~~v~iaTGR~~~~~~~~~~~ 56 (264)
T COG0561 27 EALARLREKGVKVVLATGRPLPDVLSILEE 56 (264)
T ss_pred HHHHHHHHCCCEEEEECCCChHHHHHHHHH
Confidence 455566778899999999888888877753
No 104
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=52.85 E-value=44 Score=19.29 Aligned_cols=38 Identities=18% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCcch-HHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 38 GAIPMD-STALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 38 g~~~~d-~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
|....| +.|..+|.+.+.|+++++..-+....+.|...
T Consensus 33 g~~~~Dalsa~~~a~~~~~PIll~~~~l~~~~~~~l~~~ 71 (92)
T PF04122_consen 33 GDNFADALSASPLAAKNNAPILLVNNSLPSSVKAFLKSL 71 (92)
T ss_pred CcchhhhhhhHHHHHhcCCeEEEECCCCCHHHHHHHHHc
Confidence 333345 46678888899999999955578888887744
No 105
>PRK09932 glycerate kinase II; Provisional
Probab=50.65 E-value=57 Score=24.67 Aligned_cols=24 Identities=13% Similarity=0.159 Sum_probs=19.0
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHH
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
+++|+++++||+++.|.-......
T Consensus 309 a~~A~~~~~Pvi~i~G~~~~~~~~ 332 (381)
T PRK09932 309 ASVAKQFNVPVIGIAGVLGDGVEV 332 (381)
T ss_pred HHHHHHcCCCEEEEecccCCChHH
Confidence 788999999999999975544433
No 106
>COG1709 Predicted transcriptional regulator [Transcription]
Probab=50.64 E-value=74 Score=22.56 Aligned_cols=32 Identities=22% Similarity=0.392 Sum_probs=23.1
Q ss_pred cchHHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 41 PMDSTALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 41 ~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
-+|.-|.++|..-+||+.+.. ...+.+.+-|+
T Consensus 207 ~vD~lAikiAe~e~IpLvvT~-~~~e~li~~Lr 238 (241)
T COG1709 207 NVDELAIKIAEIERIPLVVTT-MDIEELIKRLR 238 (241)
T ss_pred chhHHHHHHHhhcCCceEEec-CCHHHHHHHHh
Confidence 368899999999999976654 44555555443
No 107
>PRK10513 sugar phosphate phosphatase; Provisional
Probab=48.02 E-value=36 Score=23.23 Aligned_cols=30 Identities=10% Similarity=0.099 Sum_probs=22.2
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++-+++.|+.+.|++|+....+..++.
T Consensus 26 ~~ai~~l~~~G~~~~iaTGR~~~~~~~~~~ 55 (270)
T PRK10513 26 KQAIAAARAKGVNVVLTTGRPYAGVHRYLK 55 (270)
T ss_pred HHHHHHHHHCCCEEEEecCCChHHHHHHHH
Confidence 356666778888888888888777766553
No 108
>TIGR00045 glycerate kinase. The only characterized member of this family so far is the glycerate kinase GlxK (EC 2.7.1.31) of E. coli. This enzyme acts after glyoxylate carboligase and 2-hydroxy-3-oxopropionate reductase (tartronate semialdehyde reductase) in the conversion of glyoxylate to 3-phosphoglycerate (the D-glycerate pathway) as a part of allantoin degradation.
Probab=46.65 E-value=61 Score=24.39 Aligned_cols=22 Identities=9% Similarity=0.117 Sum_probs=18.1
Q ss_pred HHHHHhCCCCEEEEeCCCcchH
Q 035510 47 LSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i 68 (88)
+++|+++++||+++.|.-....
T Consensus 308 a~~A~~~~vPviai~G~v~~~~ 329 (375)
T TIGR00045 308 AKRAKKYGVPVIAIAGSLGDGV 329 (375)
T ss_pred HHHHHHhCCeEEEEecccCCCh
Confidence 8889999999999999764444
No 109
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=46.49 E-value=37 Score=24.45 Aligned_cols=43 Identities=19% Similarity=0.257 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCceeEEecCCCC
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAICGDQVGTFIDRTGRM 87 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~GT~i~~~~~~ 87 (88)
.|.++....++|++|++-.---..++.|..+..|-+|.+-.+|
T Consensus 77 ~ARE~l~~~~iP~IvI~D~p~~k~kd~l~~~g~GYIivk~DpM 119 (276)
T PF01993_consen 77 KAREMLSAKGIPCIVISDAPTKKAKDALEEEGFGYIIVKADPM 119 (276)
T ss_dssp HHHHHHHHSSS-EEEEEEGGGGGGHHHHHHTT-EEEEETTS--
T ss_pred HHHHHHHhCCCCEEEEcCCCchhhHHHHHhcCCcEEEEecCcc
Confidence 4567777899999988743222346778777889988876655
No 110
>PTZ00174 phosphomannomutase; Provisional
Probab=46.33 E-value=30 Score=23.74 Aligned_cols=30 Identities=10% Similarity=0.060 Sum_probs=24.3
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..+++.+++.|+.+.|++|+....+...+.
T Consensus 28 ~~ai~~l~~~Gi~~viaTGR~~~~i~~~l~ 57 (247)
T PTZ00174 28 KDTLAKLKSKGFKIGVVGGSDYPKIKEQLG 57 (247)
T ss_pred HHHHHHHHHCCCEEEEEcCCCHHHHHHHHh
Confidence 355667788899999999999888887764
No 111
>TIGR00620 sporelyase spore photoproduct lyase. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=45.86 E-value=90 Score=21.46 Aligned_cols=55 Identities=20% Similarity=0.152 Sum_probs=35.1
Q ss_pred EEEeeccCeecCCCCCCCceeeeccCHHHHhh---CCCCcch--HHHHHHHHhCCCCEEE
Q 035510 5 VLKGTNVDGVYDCHSRDNNATFEHISFRELGS---RGAIPMD--STALSFCDENSIPVVV 59 (88)
Q Consensus 5 li~~tdVdGvy~~dP~~~a~~i~~i~~~e~~~---~g~~~~d--~~a~~la~~~gi~v~I 59 (88)
.-..+|||++.+-+|+.+...-=.++..++.+ .++..++ +.|++-+.+.|-+|.+
T Consensus 30 ~TK~~nv~~Ll~l~~~~~t~~rfSlnp~~Ii~~~E~~T~sl~~Rl~Aa~k~a~aGy~Vg~ 89 (199)
T TIGR00620 30 VTKFHHVDHLLDAKHNGKTRFRFSINADYVIKNFEPGTSPLDKRIEAAVKVAKAGYPLGF 89 (199)
T ss_pred EEcccchhhHhcCCCCCCEEEEEEeCHHHHHHHhcCCCCCHHHHHHHHHHHHHcCCeEEE
Confidence 34567899999988762222222456655543 5777765 6888888888866543
No 112
>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []. This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....
Probab=45.54 E-value=32 Score=22.44 Aligned_cols=30 Identities=20% Similarity=0.138 Sum_probs=24.6
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++.+++.|+.+.+++|+.+..+.+++.
T Consensus 21 ~~al~~l~~~g~~~~i~TGR~~~~~~~~~~ 50 (254)
T PF08282_consen 21 IEALKELQEKGIKLVIATGRSYSSIKRLLK 50 (254)
T ss_dssp HHHHHHHHHTTCEEEEECSSTHHHHHHHHH
T ss_pred HHHHHhhcccceEEEEEccCcccccccccc
Confidence 456677788899999999999888888765
No 113
>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal. TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.
Probab=44.56 E-value=44 Score=22.08 Aligned_cols=29 Identities=14% Similarity=0.053 Sum_probs=20.3
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
..+++-+++.|+++.+++|+.+..+..++
T Consensus 24 ~~~i~~l~~~g~~~~~~TGR~~~~~~~~~ 52 (215)
T TIGR01487 24 IEAIRKAEKKGIPVSLVTGNTVPFARALA 52 (215)
T ss_pred HHHHHHHHHCCCEEEEEcCCcchhHHHHH
Confidence 34555567778888888888777766654
No 114
>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase. Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.
Probab=44.23 E-value=44 Score=22.74 Aligned_cols=28 Identities=14% Similarity=0.070 Sum_probs=17.2
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
.+++-+++.|+++++++|+.+..+..++
T Consensus 22 ~ai~~l~~~G~~~vi~TgR~~~~~~~~~ 49 (225)
T TIGR02461 22 EALEELKDLGFPIVFVSSKTRAEQEYYR 49 (225)
T ss_pred HHHHHHHHCCCEEEEEeCCCHHHHHHHH
Confidence 3444556667777777777666655544
No 115
>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily. The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.
Probab=43.72 E-value=49 Score=22.47 Aligned_cols=29 Identities=21% Similarity=0.118 Sum_probs=20.4
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
.+++-+++.|+.+.|++|+....+...+.
T Consensus 23 ~~i~~l~~~G~~~~iaTGR~~~~~~~~~~ 51 (256)
T TIGR00099 23 EALAKLREKGIKVVLATGRPYKEVKNILK 51 (256)
T ss_pred HHHHHHHHCCCeEEEEeCCCHHHHHHHHH
Confidence 45556667788888888887777766554
No 116
>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily. catalyze the same reaction as SPP.
Probab=43.69 E-value=51 Score=21.70 Aligned_cols=27 Identities=19% Similarity=0.096 Sum_probs=19.1
Q ss_pred HHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 46 ALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
+++-+++.|+++.+++|+.+..+..++
T Consensus 23 al~~l~~~Gi~~~~aTGR~~~~~~~~~ 49 (225)
T TIGR01482 23 AIRKAESVGIPVVLVTGNSVQFARALA 49 (225)
T ss_pred HHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 455556778888888888777666554
No 117
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=43.62 E-value=38 Score=22.92 Aligned_cols=29 Identities=10% Similarity=0.229 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
+.+++.|++.|++++.+.+...+.+.+.+
T Consensus 126 ~~a~~~Ak~~G~~vI~IT~~~~s~l~~l~ 154 (196)
T PRK10886 126 VKAVEAAVTRDMTIVALTGYDGGELAGLL 154 (196)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhhhcc
Confidence 67899999999999999998888888865
No 118
>COG1927 Mtd Coenzyme F420-dependent N(5),N(10)-methenyltetrahydromethanopterin dehydrogenase [Energy production and conversion]
Probab=43.17 E-value=71 Score=22.68 Aligned_cols=44 Identities=11% Similarity=0.231 Sum_probs=31.8
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhcCCCceeEEecCCCC
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAICGDQVGTFIDRTGRM 87 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~~~GT~i~~~~~~ 87 (88)
..|.++..++++|++|++-----..++.+.....|-+|.+..+|
T Consensus 77 ~kARE~l~~s~~PaiiigDaPg~~vkdeleeqGlGYIivk~Dpm 120 (277)
T COG1927 77 KKAREILSDSDVPAIIIGDAPGLKVKDELEEQGLGYIIVKADPM 120 (277)
T ss_pred hHHHHHHhhcCCCEEEecCCccchhHHHHHhcCCeEEEecCCcc
Confidence 45677888899999888654444566677777788888765555
No 119
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=43.10 E-value=69 Score=21.11 Aligned_cols=36 Identities=11% Similarity=0.071 Sum_probs=23.1
Q ss_pred CCCcc-hHHHHHHHHhCCCCEEEEeCCCcchHHHhhcC
Q 035510 38 GAIPM-DSTALSFCDENSIPVVVFNLLEPGNISKAICG 74 (88)
Q Consensus 38 g~~~~-d~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g 74 (88)
|.+.| -...++.+.+.|..+++++-+ .+.+.+.+..
T Consensus 51 G~G~~~G~~~a~~L~~~g~~V~v~~r~-~~~l~~~l~~ 87 (168)
T cd01080 51 GRSNIVGKPLAALLLNRNATVTVCHSK-TKNLKEHTKQ 87 (168)
T ss_pred CCcHHHHHHHHHHHhhCCCEEEEEECC-chhHHHHHhh
Confidence 66655 444566667788888888854 4556665543
No 120
>PRK10342 glycerate kinase I; Provisional
Probab=41.46 E-value=94 Score=23.50 Aligned_cols=22 Identities=9% Similarity=0.093 Sum_probs=18.1
Q ss_pred HHHHHhCCCCEEEEeCCCcchH
Q 035510 47 LSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i 68 (88)
+++|+++++||+++.|.-....
T Consensus 309 a~~A~~~~vPviai~G~~~~~~ 330 (381)
T PRK10342 309 ANVAKKYHKPVIGIAGSLTDDV 330 (381)
T ss_pred HHHHHHhCCCEEEEecccCCCh
Confidence 8889999999999999754444
No 121
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.34 E-value=52 Score=19.71 Aligned_cols=28 Identities=11% Similarity=0.171 Sum_probs=22.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.......+.+.
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~~ 91 (128)
T cd05014 64 LNLLPHLKRRGAPIIAITGNPNSTLAKL 91 (128)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCCchhhh
Confidence 6789999999999998887766666653
No 122
>PRK01158 phosphoglycolate phosphatase; Provisional
Probab=40.77 E-value=41 Score=22.28 Aligned_cols=28 Identities=18% Similarity=0.062 Sum_probs=19.4
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
.|++-+++.|+++.|++|+.+..+..++
T Consensus 27 ~al~~l~~~G~~~~iaTGR~~~~~~~~~ 54 (230)
T PRK01158 27 EAIRKAEKLGIPVILATGNVLCFARAAA 54 (230)
T ss_pred HHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence 3455556778888888888777666543
No 123
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=40.61 E-value=44 Score=19.29 Aligned_cols=29 Identities=14% Similarity=0.077 Sum_probs=20.8
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..++.++++|.+++|+++..+..+...+.
T Consensus 31 ~~l~~l~~~g~~i~ivS~~~~~~~~~~~~ 59 (139)
T cd01427 31 EALKELKEKGIKLALATNKSRREVLELLE 59 (139)
T ss_pred HHHHHHHHCCCeEEEEeCchHHHHHHHHH
Confidence 44555567788999999887777766654
No 124
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=40.09 E-value=68 Score=19.13 Aligned_cols=28 Identities=14% Similarity=0.227 Sum_probs=21.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.......+.+.
T Consensus 63 ~~~~~~a~~~g~~vi~iT~~~~s~la~~ 90 (126)
T cd05008 63 LAALRLAKEKGAKTVAITNVVGSTLARE 90 (126)
T ss_pred HHHHHHHHHcCCeEEEEECCCCChHHHh
Confidence 6789999999999998877765566553
No 125
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=39.98 E-value=34 Score=24.40 Aligned_cols=44 Identities=25% Similarity=0.364 Sum_probs=32.5
Q ss_pred chHHHHHHHHh--CCCCEEEEeCCCcchHHHhhc---CCCceeEEecCC
Q 035510 42 MDSTALSFCDE--NSIPVVVFNLLEPGNISKAIC---GDQVGTFIDRTG 85 (88)
Q Consensus 42 ~d~~a~~la~~--~gi~v~I~ng~~~~~i~~~l~---g~~~GT~i~~~~ 85 (88)
.|..-++..++ ...|+++.+|-.++|+.+++. |-.+||.|+..+
T Consensus 186 ~d~~~l~~vr~~~~~~PvllggGvt~eNv~e~l~~adGviVgS~~K~~G 234 (257)
T TIGR00259 186 VDLELLKLAKETVKDTPVLAGSGVNLENVEELLSIADGVIVATTIKKDG 234 (257)
T ss_pred CCHHHHHHHHhccCCCeEEEECCCCHHHHHHHHhhCCEEEECCCcccCC
Confidence 45555555443 357999999999999999986 556688887555
No 126
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=39.05 E-value=68 Score=19.45 Aligned_cols=27 Identities=22% Similarity=0.251 Sum_probs=22.1
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHH
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
..+++.|++.|++++.+.+.....+.+
T Consensus 64 ~~~~~~a~~~g~~vi~iT~~~~s~la~ 90 (120)
T cd05710 64 VAAAKFAKEKGATVIGLTDDEDSPLAK 90 (120)
T ss_pred HHHHHHHHHcCCeEEEEECCCCCcHHH
Confidence 678999999999999888776666665
No 127
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=38.30 E-value=67 Score=19.05 Aligned_cols=27 Identities=15% Similarity=0.161 Sum_probs=21.6
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHH
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
+.+++.+++.|++++++.++....+.+
T Consensus 77 ~~~~~~a~~~g~~iv~iT~~~~~~l~~ 103 (139)
T cd05013 77 VEAAEIAKERGAKVIAITDSANSPLAK 103 (139)
T ss_pred HHHHHHHHHcCCeEEEEcCCCCChhHH
Confidence 467888999999999888876666655
No 128
>PF01949 DUF99: Protein of unknown function DUF99; InterPro: IPR002802 The function of the archaebacterial proteins in this family is unknown.; PDB: 2QH9_A.
Probab=36.75 E-value=27 Score=23.74 Aligned_cols=35 Identities=29% Similarity=0.424 Sum_probs=19.8
Q ss_pred CCCcchHHHHHHHHhCCCCEEEEeCCCcc--hHHHhhcC
Q 035510 38 GAIPMDSTALSFCDENSIPVVVFNLLEPG--NISKAICG 74 (88)
Q Consensus 38 g~~~~d~~a~~la~~~gi~v~I~ng~~~~--~i~~~l~g 74 (88)
|...+|+.. +..+.|+||+++....|+ .+.++|+.
T Consensus 77 gFNiiD~~~--l~~~tg~PVI~V~~~~p~~~~i~~AL~~ 113 (187)
T PF01949_consen 77 GFNIIDIER--LYEETGLPVIVVMRKEPNLEGIESALRK 113 (187)
T ss_dssp TTEE--HHH--HHHHH---EEEEESS---HHHHHHCCTT
T ss_pred eeEEecHHH--HHHHHCCCEEEEEEeCCCHHHHHHHHHH
Confidence 444556654 446779999999999999 89888864
No 129
>PF00752 XPG_N: XPG N-terminal domain; InterPro: IPR006085 Xeroderma pigmentosum (XP) [] is a human autosomal recessive disease, characterised by a high incidence of sunlight-induced skin cancer. People's skin cells with this condition are hypersensitive to ultraviolet light, due to defects in the incision step of DNA excision repair. There are a minimum of seven genetic complementation groups involved in this pathway: XP-A to XP-G. XP-G is one of the most rare and phenotypically heterogeneous of XP, showing anything from slight to extreme dysfunction in DNA excision repair [, ]. XP-G can be corrected by a 133 Kd nuclear protein, XPGC []. XPGC is an acidic protein that confers normal UV resistance in expressing cells []. It is a magnesium-dependent, single-strand DNA endonuclease that makes structure-specific endonucleolytic incisions in a DNA substrate containing a duplex region and single-stranded arms [, ]. XPGC cleaves one strand of the duplex at the border with the single-stranded region []. XPG belongs to a family of proteins that includes RAD2 from Saccharomyces cerevisiae (Baker's yeast) and rad13 from Schizosaccharomyces pombe (Fission yeast), which are single-stranded DNA endonucleases [, ]; mouse and human FEN-1, a structure-specific endonuclease; RAD2 from fission yeast and RAD27 from budding yeast; fission yeast exo1, a 5'-3' double-stranded DNA exonuclease that may act in a pathway that corrects mismatched base pairs; yeast DHS1, and yeast DIN7. Sequence alignment of this family of proteins reveals that similarities are largely confined to two regions. The first is located at the N-terminal extremity (N-region) and corresponds to the first 95 to 105 amino acids. The second region is internal (I-region) and found towards the C terminus; it spans about 140 residues and contains a highly conserved core of 27 amino acids that includes a conserved pentapeptide (E-A-[DE]-A-[QS]). It is possible that the conserved acidic residues are involved in the catalytic mechanism of DNA excision repair in XPG. The amino acids linking the N- and I-regions are not conserved. This entry represents the N-terminal of XPG.; GO: 0004518 nuclease activity, 0006281 DNA repair; PDB: 1A77_A 1A76_A 1MC8_B 3QEB_Z 3QEA_Z 3QE9_Y 1UL1_Z 3Q8K_A 3Q8M_A 3Q8L_A ....
Probab=34.68 E-value=36 Score=19.97 Aligned_cols=17 Identities=35% Similarity=0.481 Sum_probs=11.6
Q ss_pred HHHhCCC-CEEEEeCCCc
Q 035510 49 FCDENSI-PVVVFNLLEP 65 (88)
Q Consensus 49 la~~~gi-~v~I~ng~~~ 65 (88)
...++|| |++||+|..|
T Consensus 67 ~L~~~gI~PifVFDG~~~ 84 (101)
T PF00752_consen 67 RLLEHGIKPIFVFDGKPP 84 (101)
T ss_dssp HHHHTTEEEEEEE--STT
T ss_pred HHHHCCCEEEEEECCCCc
Confidence 3467898 7999999876
No 130
>cd01455 vWA_F11C1-5a_type Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=34.63 E-value=1.3e+02 Score=20.56 Aligned_cols=45 Identities=9% Similarity=0.012 Sum_probs=26.3
Q ss_pred CCcchH-H-HHHHHHhCCCCEEEEeCCC-cchHHHhhcCCCceeEEec
Q 035510 39 AIPMDS-T-ALSFCDENSIPVVVFNLLE-PGNISKAICGDQVGTFIDR 83 (88)
Q Consensus 39 ~~~~d~-~-a~~la~~~gi~v~I~ng~~-~~~i~~~l~g~~~GT~i~~ 83 (88)
.+.+++ + |+++|++.||++|.+.... -+...+.+....-|..|..
T Consensus 125 ~~~i~P~~aAa~lA~~~gV~iytIgiG~~d~~~l~~iA~~tgG~~F~A 172 (191)
T cd01455 125 RYGIQPKKLADALAREPNVNAFVIFIGSLSDEADQLQRELPAGKAFVC 172 (191)
T ss_pred CCCCChHHHHHHHHHhCCCEEEEEEecCCCHHHHHHHHhCCCCcEEEe
Confidence 345665 4 5799999999999666432 2222333333333666664
No 131
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=32.91 E-value=96 Score=20.13 Aligned_cols=28 Identities=21% Similarity=0.166 Sum_probs=19.7
Q ss_pred HHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 46 ALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+++-+.+.|+++.|++|+....+...+.
T Consensus 25 ~l~~l~~~g~~~~i~TGR~~~~~~~~~~ 52 (204)
T TIGR01484 25 ALERLREAGVKVVLVTGRSLAEIKELLK 52 (204)
T ss_pred HHHHHHHCCCEEEEECCCCHHHHHHHHH
Confidence 3444456678888888888877777664
No 132
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=32.85 E-value=89 Score=20.84 Aligned_cols=28 Identities=11% Similarity=0.204 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 128 i~~~~~ak~~g~~iI~iT~~~~s~l~~~ 155 (192)
T PRK00414 128 IKAIEAARAKGMKVITLTGKDGGKMAGL 155 (192)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHh
Confidence 5789999999999999888877777663
No 133
>PRK13938 phosphoheptose isomerase; Provisional
Probab=32.76 E-value=82 Score=21.29 Aligned_cols=28 Identities=18% Similarity=0.141 Sum_probs=23.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.++..+.+.+.
T Consensus 130 i~a~~~Ak~~G~~vI~iT~~~~s~La~~ 157 (196)
T PRK13938 130 LRAAKTARELGVTVVAMTGESGGQLAEF 157 (196)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCChhhhh
Confidence 5789999999999999988877777663
No 134
>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=32.64 E-value=89 Score=22.94 Aligned_cols=29 Identities=24% Similarity=0.403 Sum_probs=20.3
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
.+++.+++.|+++++++|+....+..+..
T Consensus 25 ~aL~~Lk~~GI~vVlaTGRt~~ev~~l~~ 53 (302)
T PRK12702 25 QALAALERRSIPLVLYSLRTRAQLEHLCR 53 (302)
T ss_pred HHHHHHHHCCCEEEEEcCCCHHHHHHHHH
Confidence 44556677788888888887777665543
No 135
>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain. This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.
Probab=31.62 E-value=98 Score=19.28 Aligned_cols=49 Identities=20% Similarity=0.047 Sum_probs=27.4
Q ss_pred EeeccCeecCCCCC-CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCC
Q 035510 7 KGTNVDGVYDCHSR-DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLL 63 (88)
Q Consensus 7 ~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~ 63 (88)
++.|+||++...+. .-.+ .+.+.. -..++ ...++.+++.|+++.|++..
T Consensus 3 ~~~d~dgtl~~~~~~~~~~-----~~~~~~--~~~g~-~~~l~~Lk~~g~~~~I~Sn~ 52 (147)
T TIGR01656 3 LFLDRDGVINEDTVSDYPR-----SLDDWQ--LRPGA-VPALLTLRAAGYTVVVVTNQ 52 (147)
T ss_pred EEEeCCCceeccCCcccCC-----CHHHeE--EcCCh-HHHHHHHHHCCCEEEEEeCC
Confidence 56799999987654 1111 122211 11222 34566667788888877654
No 136
>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.
Probab=31.19 E-value=1e+02 Score=19.86 Aligned_cols=28 Identities=14% Similarity=0.057 Sum_probs=22.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 89 i~~~~~ak~~g~~ii~IT~~~~s~la~~ 116 (179)
T TIGR03127 89 VTVAKKAKEIGATVAAITTNPESTLGKL 116 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 5789999999999998887766666664
No 137
>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily. Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).
Probab=31.17 E-value=87 Score=20.21 Aligned_cols=28 Identities=14% Similarity=0.214 Sum_probs=22.4
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 118 i~~~~~ak~~Ga~vI~IT~~~~s~La~~ 145 (177)
T cd05006 118 LKALEAAKERGMKTIALTGRDGGKLLEL 145 (177)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchhhh
Confidence 6789999999999998887766666554
No 138
>PRK13937 phosphoheptose isomerase; Provisional
Probab=31.11 E-value=98 Score=20.42 Aligned_cols=28 Identities=14% Similarity=0.141 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 123 ~~~~~~ak~~g~~~I~iT~~~~s~L~~~ 150 (188)
T PRK13937 123 LAALEKARELGMKTIGLTGRDGGKMKEL 150 (188)
T ss_pred HHHHHHHHHCCCeEEEEeCCCCChhHHh
Confidence 5789999999999999888776666653
No 139
>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed
Probab=31.02 E-value=67 Score=22.23 Aligned_cols=27 Identities=22% Similarity=0.241 Sum_probs=17.2
Q ss_pred HHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 46 ALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
+++.+.+.|+++.|++|+.+..+...+
T Consensus 29 ai~~l~~~Gi~~~iaTgR~~~~~~~~~ 55 (273)
T PRK00192 29 ALKALKEKGIPVIPCTSKTAAEVEVLR 55 (273)
T ss_pred HHHHHHHCCCEEEEEcCCCHHHHHHHH
Confidence 455556677777777777665555544
No 140
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=30.85 E-value=88 Score=19.91 Aligned_cols=27 Identities=7% Similarity=0.214 Sum_probs=21.8
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHH
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISK 70 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~ 70 (88)
..+++.|++.|++++.+.+.....+.+
T Consensus 96 ~~~~~~a~~~g~~ii~iT~~~~s~l~~ 122 (154)
T TIGR00441 96 LKAIEAAKDKGMKTITLAGKDGGKMAG 122 (154)
T ss_pred HHHHHHHHHCCCEEEEEeCCCCCchhh
Confidence 578999999999999888776666655
No 141
>cd01987 USP_OKCHK USP domain is located between the N-terminal sensor domain and C-terminal catalytic domain of this Osmosensitive K+ channel histidine kinase family. The family of KdpD sensor kinase proteins regulates the kdpFABC operon responsible for potassium transport. The USP domain is homologous to the universal stress protein Usp Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity.
Probab=30.34 E-value=96 Score=18.20 Aligned_cols=29 Identities=14% Similarity=0.272 Sum_probs=22.1
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
.+.+.++++.++|+.......+.+++.|.
T Consensus 78 ~~~~~~~~~dllviG~~~~~~~~~~~~Gs 106 (124)
T cd01987 78 VEFAREHNVTQIVVGKSRRSRWRELFRGS 106 (124)
T ss_pred HHHHHHcCCCEEEeCCCCCchHHHHhccc
Confidence 55667788888888877777788877764
No 142
>TIGR00685 T6PP trehalose-phosphatase. At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.
Probab=30.15 E-value=1.3e+02 Score=20.44 Aligned_cols=57 Identities=9% Similarity=-0.116 Sum_probs=31.0
Q ss_pred cEEEEeeccCeecCCCCC-CCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 3 EVVLKGTNVDGVYDCHSR-DNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 3 d~li~~tdVdGvy~~dP~-~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
...+++.|.||-...--. |+...+ + .++ -..-.+|+.+.+..++|++|+....+.+.
T Consensus 2 ~~~~l~lD~DGTL~~~~~~p~~~~~---~-~~~--------~~~L~~L~~~~~~~v~ivSGR~~~~~~~~ 59 (244)
T TIGR00685 2 RKRAFFFDYDGTLSEIVPDPDAAVV---S-DRL--------LTILQKLAARPHNAIWIISGRKFLEKWLG 59 (244)
T ss_pred CcEEEEEecCccccCCcCCCcccCC---C-HHH--------HHHHHHHHhCCCCeEEEEECCChhhcccc
Confidence 456677899998863111 221111 1 111 11123455556777889999876665553
No 143
>PF13653 GDPD_2: Glycerophosphoryl diester phosphodiesterase family; PDB: 3RLG_A 2F9R_B 1XX1_A 3RLH_A.
Probab=29.86 E-value=16 Score=17.54 Aligned_cols=10 Identities=30% Similarity=0.434 Sum_probs=6.5
Q ss_pred ccCeecCCCC
Q 035510 10 NVDGVYDCHS 19 (88)
Q Consensus 10 dVdGvy~~dP 19 (88)
.||||.+.+|
T Consensus 20 GVDgI~Td~p 29 (30)
T PF13653_consen 20 GVDGIMTDYP 29 (30)
T ss_dssp T-SEEEES-H
T ss_pred CCCEeeCCCC
Confidence 5899998766
No 144
>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.
Probab=29.06 E-value=1.1e+02 Score=19.71 Aligned_cols=28 Identities=14% Similarity=0.094 Sum_probs=22.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 92 i~~~~~ak~~g~~iI~IT~~~~s~la~~ 119 (179)
T cd05005 92 VNAAEKAKKAGAKVVLITSNPDSPLAKL 119 (179)
T ss_pred HHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence 5789999999999998888777777654
No 145
>PF01751 Toprim: Toprim domain; InterPro: IPR006171 This is a conserved region from DNA primase. This corresponds to the Toprim (topoisomerase-primase) domain common to DnaG primases, topoisomerases, OLD family nucleases and RecR/M DNA repair proteins []. Both DnaG motifs IV and V are present in the alignment, the DxD (V) motif may be involved in Mg2+ binding and mutations to the conserved glutamate (IV) completely abolish DnaG type primase activity. DNA primase 2.7.7.6 from EC is a nucleotidyltransferase it synthesizes the oligoribonucleotide primers required for DNA replication on the lagging strand of the replication fork; it can also prime the leading stand and has been implicated in cell division []. This family also includes the atypical archaeal A subunit from type II DNA topoisomerases []. Type II DNA topoisomerases catalyse the relaxation of DNA supercoiling by causing transient double strand breaks.; PDB: 2ZJT_A 3IG0_A 3M4I_A 3NUH_B 1GKU_B 1GL9_C 3PWT_A 1CY4_A 1ECL_A 1CY7_A ....
Probab=27.64 E-value=47 Score=19.47 Aligned_cols=12 Identities=25% Similarity=0.437 Sum_probs=7.3
Q ss_pred CCcEEEEeeccC
Q 035510 1 HAEVVLKGTNVD 12 (88)
Q Consensus 1 ~ad~li~~tdVd 12 (88)
+++.++++||-|
T Consensus 59 ~~~~iiiatD~D 70 (100)
T PF01751_consen 59 KADEIIIATDPD 70 (100)
T ss_dssp SCSEEEEEC-SS
T ss_pred hccEeeecCCCC
Confidence 367777777644
No 146
>smart00485 XPGN Xeroderma pigmentosum G N-region. domain in nucleases
Probab=26.96 E-value=75 Score=18.58 Aligned_cols=15 Identities=40% Similarity=0.554 Sum_probs=12.3
Q ss_pred HhCCC-CEEEEeCCCc
Q 035510 51 DENSI-PVVVFNLLEP 65 (88)
Q Consensus 51 ~~~gi-~v~I~ng~~~ 65 (88)
.++|| |++||+|..|
T Consensus 67 ~~~~I~PifVFDG~~~ 82 (99)
T smart00485 67 LEFGIKPIFVFDGKPP 82 (99)
T ss_pred HHCCCeEEEEECCCCc
Confidence 57787 7999999876
No 147
>PRK00766 hypothetical protein; Provisional
Probab=26.59 E-value=72 Score=21.82 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=23.3
Q ss_pred CCCcchHHHHHHHHhCCCCEEEE--eCCCcchHHHhhc
Q 035510 38 GAIPMDSTALSFCDENSIPVVVF--NLLEPGNISKAIC 73 (88)
Q Consensus 38 g~~~~d~~a~~la~~~gi~v~I~--ng~~~~~i~~~l~ 73 (88)
|...+|+.++ ..+.|+||+++ ..-+.+.+.++|+
T Consensus 84 gFNvvD~~~l--~~~tg~PVI~V~r~~p~~~~ie~AL~ 119 (194)
T PRK00766 84 GFNVVDIEEL--YRETGLPVIVVMRKKPDFEAIESALK 119 (194)
T ss_pred eeEEecHHHH--HHHHCCCEEEEEecCCCHHHHHHHHH
Confidence 4555676654 47789999988 5555567887774
No 148
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.47 E-value=1.5e+02 Score=20.16 Aligned_cols=27 Identities=26% Similarity=0.241 Sum_probs=20.7
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+.-++..|+.++|+|-+.+.++..+..
T Consensus 55 ~~e~k~~gi~v~vvSNn~e~RV~~~~~ 81 (175)
T COG2179 55 LAELKEAGIKVVVVSNNKESRVARAAE 81 (175)
T ss_pred HHHHHhcCCEEEEEeCCCHHHHHhhhh
Confidence 334478899999999888888877664
No 149
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=26.38 E-value=50 Score=19.94 Aligned_cols=23 Identities=17% Similarity=0.248 Sum_probs=17.0
Q ss_pred cchHHHhhcCCCceeEEecC-CCC
Q 035510 65 PGNISKAICGDQVGTFIDRT-GRM 87 (88)
Q Consensus 65 ~~~i~~~l~g~~~GT~i~~~-~~~ 87 (88)
-+.+.++|.-...||+|.|. ++|
T Consensus 66 ~~~L~~al~~~G~G~LvHP~~G~~ 89 (93)
T PF07157_consen 66 RDALIAALEAPGPGELVHPWFGSM 89 (93)
T ss_pred HHHHHHHHcCCCCeEEecCCCceE
Confidence 45677788777789999985 544
No 150
>KOG1014 consensus 17 beta-hydroxysteroid dehydrogenase type 3, HSD17B3 [Lipid transport and metabolism]
Probab=25.62 E-value=2e+02 Score=21.23 Aligned_cols=44 Identities=11% Similarity=0.400 Sum_probs=30.1
Q ss_pred chHHHHHHHHhCCC--CEEEEeCCCcch----HHHhhcCCCceeEEecCC
Q 035510 42 MDSTALSFCDENSI--PVVVFNLLEPGN----ISKAICGDQVGTFIDRTG 85 (88)
Q Consensus 42 ~d~~a~~la~~~gi--~v~I~ng~~~~~----i~~~l~g~~~GT~i~~~~ 85 (88)
.+.++-+++.++++ .+++++..+++. +.+.|.+-++|=+|-..+
T Consensus 86 L~~v~kEI~~~~~vev~~i~~Dft~~~~~ye~i~~~l~~~~VgILVNNvG 135 (312)
T KOG1014|consen 86 LEAVAKEIEEKYKVEVRIIAIDFTKGDEVYEKLLEKLAGLDVGILVNNVG 135 (312)
T ss_pred HHHHHHHHHHHhCcEEEEEEEecCCCchhHHHHHHHhcCCceEEEEeccc
Confidence 35677888888885 455677666654 666677778888876543
No 151
>TIGR03640 cas1_DVULG CRISPR-associated endonuclease Cas1, DVULG subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.
Probab=25.59 E-value=1.6e+02 Score=21.54 Aligned_cols=26 Identities=19% Similarity=0.410 Sum_probs=20.6
Q ss_pred CCCcchHHHHHHHHhCCCCEEEEeCC
Q 035510 38 GAIPMDSTALSFCDENSIPVVVFNLL 63 (88)
Q Consensus 38 g~~~~d~~a~~la~~~gi~v~I~ng~ 63 (88)
|...+-..++..+.++||++++++..
T Consensus 46 g~~~ist~al~~l~~~~I~v~f~~~~ 71 (340)
T TIGR03640 46 GNVGLSPFLMGRCAEDGISLVFLTEN 71 (340)
T ss_pred cCCCcCHHHHHHHHHCCCEEEEECCC
Confidence 44445677899999999999999853
No 152
>PF05822 UMPH-1: Pyrimidine 5'-nucleotidase (UMPH-1); InterPro: IPR006434 This family is a small group of metazoan sequences with sequences from Arabidopsis thaliana (Mouse-ear cress) and rice. The sequences represent pyrimidine 5-nucleotidases, apparently in reference to HSPC233, the Homo sapiens (Human) homologue []. The structure of mouse sequence has been reported []. This group of sequences was originally found during searches for members of the haloacid dehalogenase (HAD) superfamily (IPR005834 from INTERPRO). All of the conserved catalytic motifs [] are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches of that subfamily (IA-ID) as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.; GO: 0000287 magnesium ion binding, 0008253 5'-nucleotidase activity, 0005737 cytoplasm; PDB: 2BDU_B 2G07_A 2G06_A 2G0A_A 2Q4T_A 2G09_A 2G08_A 2VKQ_A 2CN1_A 2JGA_A.
Probab=25.47 E-value=40 Score=23.96 Aligned_cols=28 Identities=18% Similarity=0.287 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 46 ALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..+.+.+++||++|||+.--+.|..+|+
T Consensus 98 ~f~~L~~~~IP~lIFSAGlgdvI~~vL~ 125 (246)
T PF05822_consen 98 FFDKLEEHNIPLLIFSAGLGDVIEEVLR 125 (246)
T ss_dssp HHHHHHCTT--EEEEEEEEHHHHHHHHH
T ss_pred HHHHHHhcCCCEEEEeCCcHHHHHHHHH
Confidence 3677789999999999876677777776
No 153
>PLN02775 Probable dihydrodipicolinate reductase
Probab=25.46 E-value=1.5e+02 Score=21.51 Aligned_cols=38 Identities=16% Similarity=0.109 Sum_probs=28.3
Q ss_pred HHHHHhCCCCEEEEe-CCCcchHHHhhcCCCceeEEecC
Q 035510 47 LSFCDENSIPVVVFN-LLEPGNISKAICGDQVGTFIDRT 84 (88)
Q Consensus 47 ~~la~~~gi~v~I~n-g~~~~~i~~~l~g~~~GT~i~~~ 84 (88)
++.|.++|++++|.. |..++.+.++..-..++-++.|+
T Consensus 97 ~~~~~~~g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apN 135 (286)
T PLN02775 97 AELYCKNGLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQ 135 (286)
T ss_pred HHHHHHCCCCEEEECCCCCHHHHHHHHhcCCccEEEECc
Confidence 778889999987754 77777777665544678888776
No 154
>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544. This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.
Probab=25.08 E-value=1.1e+02 Score=22.01 Aligned_cols=27 Identities=19% Similarity=0.285 Sum_probs=22.5
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
++.+.++|+++.|+++.-...+..+|+
T Consensus 130 l~~L~~~GIpv~IvS~G~~~~Ie~vL~ 156 (277)
T TIGR01544 130 FDKLQQHSIPVFIFSAGIGNVLEEVLR 156 (277)
T ss_pred HHHHHHCCCcEEEEeCCcHHHHHHHHH
Confidence 566678999999999887778887776
No 155
>KOG3588 consensus Chondroitin synthase 1 [Carbohydrate transport and metabolism]
Probab=25.02 E-value=33 Score=26.37 Aligned_cols=18 Identities=28% Similarity=0.268 Sum_probs=15.3
Q ss_pred CCcEEEEeeccCeecCCC
Q 035510 1 HAEVVLKGTNVDGVYDCH 18 (88)
Q Consensus 1 ~ad~li~~tdVdGvy~~d 18 (88)
+++.|++++|||=+|+.+
T Consensus 312 ~~nvLLFfcDVDi~FT~e 329 (494)
T KOG3588|consen 312 NANVLLFFCDVDIYFTTE 329 (494)
T ss_pred ccceeEEEeccceeehHH
Confidence 478999999999999853
No 156
>TIGR00287 cas1 CRISPR-associated endonuclease Cas1. This model identifies CRISPR-associated protein Cas1, the most universal CRISPR system protein. CRISPR is an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Cas1 is a metal-dependent DNA-specific endonuclease.
Probab=24.62 E-value=1.6e+02 Score=21.22 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=20.4
Q ss_pred CCCcchHHHHHHHHhCCCCEEEEeCC
Q 035510 38 GAIPMDSTALSFCDENSIPVVVFNLL 63 (88)
Q Consensus 38 g~~~~d~~a~~la~~~gi~v~I~ng~ 63 (88)
|...+-..++..+.++||++++++..
T Consensus 42 g~~~lst~~l~~l~~~~I~v~f~~~~ 67 (323)
T TIGR00287 42 GGVSISSAAIRELAKRGIDIVFLGGD 67 (323)
T ss_pred CCCCcCHHHHHHHHHCCCeEEEECCC
Confidence 33445677899999999999999853
No 157
>smart00460 TGc Transglutaminase/protease-like homologues. Transglutaminases are enzymes that establish covalent links between proteins. A subset of transglutaminase homologues appear to catalyse the reverse reaction, the hydrolysis of peptide bonds. Proteins with this domain are both extracellular and intracellular, and it is likely that the eukaryotic intracellular proteins are involved in signalling events.
Probab=24.34 E-value=1e+02 Score=16.16 Aligned_cols=19 Identities=16% Similarity=0.095 Sum_probs=14.9
Q ss_pred HHHHHHhCCCCEEEEeCCC
Q 035510 46 ALSFCDENSIPVVVFNLLE 64 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~ 64 (88)
+..+++..|||+.++.|..
T Consensus 16 ~~~llr~~GIpar~v~g~~ 34 (68)
T smart00460 16 FVALLRSLGIPARVVSGYL 34 (68)
T ss_pred HHHHHHHCCCCeEEEeeee
Confidence 4567788999999988753
No 158
>PRK10826 2-deoxyglucose-6-phosphatase; Provisional
Probab=23.53 E-value=1.3e+02 Score=19.93 Aligned_cols=29 Identities=10% Similarity=0.234 Sum_probs=21.9
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..++.+++.|+++.|+++.....+...++
T Consensus 99 ~~l~~l~~~g~~~~i~S~~~~~~~~~~l~ 127 (222)
T PRK10826 99 EALALCKAQGLKIGLASASPLHMLEAVLT 127 (222)
T ss_pred HHHHHHHHCCCeEEEEeCCcHHHHHHHHH
Confidence 34566677899999999887777776664
No 159
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.53 E-value=1.8e+02 Score=17.44 Aligned_cols=28 Identities=11% Similarity=0.061 Sum_probs=20.5
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
+.+++.|++.|++++.+.... .+.+...
T Consensus 60 i~~~~~a~~~g~~iI~IT~~~--~l~~~~~ 87 (119)
T cd05017 60 LSAVEQAKERGAKIVAITSGG--KLLEMAR 87 (119)
T ss_pred HHHHHHHHHCCCEEEEEeCCc--hHHHHHH
Confidence 678999999999988776543 4666543
No 160
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=22.98 E-value=1.2e+02 Score=20.20 Aligned_cols=27 Identities=22% Similarity=0.160 Sum_probs=20.2
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
++.+++.|+++.|+++.....+..++.
T Consensus 83 l~~l~~~g~~~~IvS~~~~~~i~~il~ 109 (219)
T PRK09552 83 VQFVKENNIPFYVVSGGMDFFVYPLLQ 109 (219)
T ss_pred HHHHHHcCCeEEEECCCcHHHHHHHHH
Confidence 556678999999999876666665553
No 161
>PRK13936 phosphoheptose isomerase; Provisional
Probab=22.70 E-value=1.6e+02 Score=19.65 Aligned_cols=28 Identities=18% Similarity=0.258 Sum_probs=23.0
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+...+.+.+.
T Consensus 128 ~~~~~~ak~~g~~iI~IT~~~~s~l~~l 155 (197)
T PRK13936 128 IQAIQAAHEREMHVVALTGRDGGKMASL 155 (197)
T ss_pred HHHHHHHHHCCCeEEEEECCCCChhhhh
Confidence 5679999999999998888777777664
No 162
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=22.67 E-value=1.6e+02 Score=18.60 Aligned_cols=22 Identities=14% Similarity=0.267 Sum_probs=10.5
Q ss_pred HHHHHHHhCCCCEEEEeCCCcc
Q 035510 45 TALSFCDENSIPVVVFNLLEPG 66 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~ 66 (88)
.+++++..+|+.++|+..--|+
T Consensus 56 ~~a~~l~~~gvdvvi~~~iG~~ 77 (121)
T COG1433 56 RIAELLVDEGVDVVIASNIGPN 77 (121)
T ss_pred HHHHHHHHcCCCEEEECccCHH
Confidence 3445555555555555444333
No 163
>PLN02887 hydrolase family protein
Probab=21.84 E-value=1.1e+02 Score=24.25 Aligned_cols=30 Identities=13% Similarity=0.041 Sum_probs=24.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++-+++.|+.++|+.|+....+..++.
T Consensus 331 ~eAI~kl~ekGi~~vIATGR~~~~i~~~l~ 360 (580)
T PLN02887 331 AKALKEALSRGVKVVIATGKARPAVIDILK 360 (580)
T ss_pred HHHHHHHHHCCCeEEEEcCCCHHHHHHHHH
Confidence 467888889999999999998887776654
No 164
>PF09895 DUF2122: RecB-family nuclease (DUF2122); InterPro: IPR018665 This family of archaeal proteins include RecB nuclease-like proteins as well as proteins of no known function.
Probab=21.82 E-value=2.1e+02 Score=17.71 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=18.9
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhcCC
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAICGD 75 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~g~ 75 (88)
+.+.++|.++|.+++|++ +......+|+.+
T Consensus 9 Pe~~KlA~K~gk~livlp--dl~DAiEvl~p~ 38 (106)
T PF09895_consen 9 PEAFKLALKLGKSLIVLP--DLKDAIEVLKPD 38 (106)
T ss_pred HHHHHHHHHcCCcEEEeC--CHHHHHHhcCCc
Confidence 456788888888888875 233333444444
No 165
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.81 E-value=1.6e+02 Score=16.62 Aligned_cols=24 Identities=33% Similarity=0.541 Sum_probs=20.9
Q ss_pred CC-CcchHHHHHHHHhCCCCEEEEe
Q 035510 38 GA-IPMDSTALSFCDENSIPVVVFN 61 (88)
Q Consensus 38 g~-~~~d~~a~~la~~~gi~v~I~n 61 (88)
|. .+.|..|.+.|.+.|++++.+.
T Consensus 40 ga~~GaD~iA~~wA~~~gv~~~~~~ 64 (71)
T PF10686_consen 40 GAPKGADRIAARWARERGVPVIRFP 64 (71)
T ss_pred CCCCCHHHHHHHHHHHCCCeeEEeC
Confidence 56 6889999999999999988774
No 166
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=21.72 E-value=1.9e+02 Score=17.04 Aligned_cols=28 Identities=18% Similarity=0.348 Sum_probs=21.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
...++.+++.|++++.+.......+.+.
T Consensus 70 ~~~~~~ak~~g~~vi~iT~~~~~~l~~~ 97 (131)
T PF01380_consen 70 IELLRFAKERGAPVILITSNSESPLARL 97 (131)
T ss_dssp HHHHHHHHHTTSEEEEEESSTTSHHHHH
T ss_pred hhhhHHHHhcCCeEEEEeCCCCCchhhh
Confidence 4557788999999998887777777664
No 167
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=21.61 E-value=1.8e+02 Score=20.55 Aligned_cols=28 Identities=11% Similarity=0.139 Sum_probs=23.1
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHh
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKA 71 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~ 71 (88)
+.+++.|++.|++++.+.+.....+.+.
T Consensus 106 ~~~~~~ak~~g~~vI~iT~~~~s~la~~ 133 (321)
T PRK11543 106 DLIIPRLEDKSIALLAMTGKPTSPLGLA 133 (321)
T ss_pred HHHHHHHHHcCCeEEEEECCCCChhHHh
Confidence 6789999999999998888776666654
No 168
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=21.51 E-value=1.1e+02 Score=18.49 Aligned_cols=28 Identities=18% Similarity=0.229 Sum_probs=20.7
Q ss_pred HHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 46 ALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 46 a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
.++-+++.|++++|++...+..+...++
T Consensus 85 ~L~~l~~~~~~~~i~Sn~~~~~~~~~l~ 112 (176)
T PF13419_consen 85 LLERLKAKGIPLVIVSNGSRERIERVLE 112 (176)
T ss_dssp HHHHHHHTTSEEEEEESSEHHHHHHHHH
T ss_pred hhhhcccccceeEEeecCCccccccccc
Confidence 3444466899999999888777776665
No 169
>PF02568 ThiI: Thiamine biosynthesis protein (ThiI); InterPro: IPR020536 Thiamine pyrophosphate (TPP) is synthesized de novo in many bacteria and is a required cofactor for many enzymes in the cell. ThiI is required for thiazole synthesis in the thiamine biosynthesis pathway []. Almost all proteins containing this entry have an N-terminal THUMP domain (see IPR004114 from INTERPRO).; GO: 0003723 RNA binding, 0009228 thiamine biosynthetic process, 0005737 cytoplasm; PDB: 1VBK_B 2C5S_A.
Probab=21.44 E-value=1e+02 Score=21.02 Aligned_cols=25 Identities=12% Similarity=0.086 Sum_probs=18.2
Q ss_pred CCCcch-HHHHHHHHhCCCCEEEEeC
Q 035510 38 GAIPMD-STALSFCDENSIPVVVFNL 62 (88)
Q Consensus 38 g~~~~d-~~a~~la~~~gi~v~I~ng 62 (88)
=+||+| +.|+.++++.|++|..+..
T Consensus 10 lSGGiDSpVAa~lm~krG~~V~~l~f 35 (197)
T PF02568_consen 10 LSGGIDSPVAAWLMMKRGCEVIALHF 35 (197)
T ss_dssp -SSCCHHHHHHHHHHCBT-EEEEEEE
T ss_pred ecCCccHHHHHHHHHHCCCEEEEEEE
Confidence 367898 4788888999998776554
No 170
>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase. Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.
Probab=21.00 E-value=1.4e+02 Score=19.85 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=20.3
Q ss_pred HHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 47 LSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 47 ~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
++.+.+.|+++.|+++.....+..++.
T Consensus 79 l~~l~~~g~~~~IvS~~~~~~i~~il~ 105 (214)
T TIGR03333 79 VAFINEHGIPFYVISGGMDFFVYPLLE 105 (214)
T ss_pred HHHHHHCCCeEEEECCCcHHHHHHHHH
Confidence 556678899999999886666665554
No 171
>PLN02331 phosphoribosylglycinamide formyltransferase
Probab=20.64 E-value=1.1e+02 Score=20.86 Aligned_cols=20 Identities=30% Similarity=0.567 Sum_probs=13.5
Q ss_pred hHHHHHHHHhCCCCEEEEeC
Q 035510 43 DSTALSFCDENSIPVVVFNL 62 (88)
Q Consensus 43 d~~a~~la~~~gi~v~I~ng 62 (88)
+..+.+.|+++|||++.++-
T Consensus 38 ~~~~~~~A~~~gIp~~~~~~ 57 (207)
T PLN02331 38 GCGGAEYARENGIPVLVYPK 57 (207)
T ss_pred CChHHHHHHHhCCCEEEecc
Confidence 34557777777888776554
No 172
>PHA03105 EEV glycoprotein; Provisional
Probab=20.50 E-value=55 Score=22.05 Aligned_cols=12 Identities=42% Similarity=0.645 Sum_probs=10.0
Q ss_pred eccCeecCCCCC
Q 035510 9 TNVDGVYDCHSR 20 (88)
Q Consensus 9 tdVdGvy~~dP~ 20 (88)
.+++||||-+|.
T Consensus 128 ~~~~~vydlppp 139 (188)
T PHA03105 128 DNNNGVYDLPPP 139 (188)
T ss_pred CCCCceeeCCcC
Confidence 459999999876
No 173
>smart00775 LNS2 LNS2 domain. This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.
Probab=20.42 E-value=2.5e+02 Score=18.00 Aligned_cols=24 Identities=8% Similarity=0.059 Sum_probs=17.9
Q ss_pred HHHHHHHhCCCCEEEEeCCCcchH
Q 035510 45 TALSFCDENSIPVVVFNLLEPGNI 68 (88)
Q Consensus 45 ~a~~la~~~gi~v~I~ng~~~~~i 68 (88)
.+.+-+++.|.++++++|+.....
T Consensus 34 ~a~~~l~~~G~~ivy~TGRp~~~~ 57 (157)
T smart00775 34 KLYRDIQNNGYKILYLTARPIGQA 57 (157)
T ss_pred HHHHHHHHcCCeEEEEcCCcHHHH
Confidence 455666788999999999865544
No 174
>TIGR03639 cas1_NMENI CRISPR-associated endonuclease Cas1, NMENI subtype. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.
Probab=20.24 E-value=2e+02 Score=20.39 Aligned_cols=22 Identities=27% Similarity=0.350 Sum_probs=18.9
Q ss_pred cchHHHHHHHHhCCCCEEEEeC
Q 035510 41 PMDSTALSFCDENSIPVVVFNL 62 (88)
Q Consensus 41 ~~d~~a~~la~~~gi~v~I~ng 62 (88)
.+...++..+.++||++++++.
T Consensus 46 ~lst~~l~~l~~~~I~v~f~~~ 67 (278)
T TIGR03639 46 TISSALLSALAENNIALIFCDE 67 (278)
T ss_pred EEcHHHHHHHHHCCCeEEEECC
Confidence 4577789999999999999985
No 175
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=20.19 E-value=99 Score=18.95 Aligned_cols=38 Identities=13% Similarity=0.247 Sum_probs=22.1
Q ss_pred HHHHHhCCCCEEEEe-CCCcchHHHhhc-CCCceeEEecC
Q 035510 47 LSFCDENSIPVVVFN-LLEPGNISKAIC-GDQVGTFIDRT 84 (88)
Q Consensus 47 ~~la~~~gi~v~I~n-g~~~~~i~~~l~-g~~~GT~i~~~ 84 (88)
++.+.++|+++++.. |..++.+..+-. .+..+-++.|+
T Consensus 84 ~~~~~~~g~~~ViGTTG~~~~~~~~l~~~a~~~~vl~a~N 123 (124)
T PF01113_consen 84 LEYALKHGVPLVIGTTGFSDEQIDELEELAKKIPVLIAPN 123 (124)
T ss_dssp HHHHHHHT-EEEEE-SSSHHHHHHHHHHHTTTSEEEE-SS
T ss_pred HHHHHhCCCCEEEECCCCCHHHHHHHHHHhccCCEEEeCC
Confidence 777888999988844 565555554422 44466666553
No 176
>PLN03017 trehalose-phosphatase
Probab=20.16 E-value=3.9e+02 Score=20.13 Aligned_cols=54 Identities=9% Similarity=0.108 Sum_probs=31.0
Q ss_pred cEEEEeeccCeecC---CCCCCCceeeeccCHHHHhhCCCCcchHHHHHHHHhCCCCEEEEeCCCcchHHHhh
Q 035510 3 EVVLKGTNVDGVYD---CHSRDNNATFEHISFRELGSRGAIPMDSTALSFCDENSIPVVVFNLLEPGNISKAI 72 (88)
Q Consensus 3 d~li~~tdVdGvy~---~dP~~~a~~i~~i~~~e~~~~g~~~~d~~a~~la~~~gi~v~I~ng~~~~~i~~~l 72 (88)
..+++++|.||=+. .+|. ... ++.+ + ..+++-+. .++++.|++|+....+.+.+
T Consensus 110 k~~llflD~DGTL~Piv~~p~--~a~---i~~~-~---------~~aL~~La-~~~~vaIvSGR~~~~l~~~~ 166 (366)
T PLN03017 110 KQIVMFLDYDGTLSPIVDDPD--KAF---MSSK-M---------RRTVKKLA-KCFPTAIVTGRCIDKVYNFV 166 (366)
T ss_pred CCeEEEEecCCcCcCCcCCcc--ccc---CCHH-H---------HHHHHHHh-cCCcEEEEeCCCHHHHHHhh
Confidence 34677789999887 3442 111 1111 1 12233323 46788899998888887764
No 177
>COG1456 CdhE CO dehydrogenase/acetyl-CoA synthase gamma subunit (corrinoid Fe-S protein) [Energy production and conversion]
Probab=20.12 E-value=1.4e+02 Score=23.00 Aligned_cols=29 Identities=21% Similarity=0.438 Sum_probs=23.7
Q ss_pred HHHHHHHHhCCCCEEEEeCCCcchHHHhhc
Q 035510 44 STALSFCDENSIPVVVFNLLEPGNISKAIC 73 (88)
Q Consensus 44 ~~a~~la~~~gi~v~I~ng~~~~~i~~~l~ 73 (88)
..|++.+.+.+.|+++++ ++|+.++.+|.
T Consensus 149 a~ave~v~~~~~pv~l~s-~dpevmkaaLe 177 (467)
T COG1456 149 AEAVEKVAEAGLPVILCS-FDPEVMKAALE 177 (467)
T ss_pred HHHHHHHHhcCCcEEEEe-CCHHHHHHHHH
Confidence 357888889999998886 67988888875
No 178
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=20.08 E-value=1.6e+02 Score=17.58 Aligned_cols=11 Identities=18% Similarity=0.178 Sum_probs=8.3
Q ss_pred EeeccCeecCC
Q 035510 7 KGTNVDGVYDC 17 (88)
Q Consensus 7 ~~tdVdGvy~~ 17 (88)
++-|+||+...
T Consensus 3 ~~~D~dgtL~~ 13 (132)
T TIGR01662 3 VVLDLDGTLTD 13 (132)
T ss_pred EEEeCCCceec
Confidence 45699999883
No 179
>PRK06186 hypothetical protein; Validated
Probab=20.04 E-value=1e+02 Score=21.65 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=23.7
Q ss_pred CCCcc--hHHHHHHHHhCCCCEE-EEeCCCcchHH
Q 035510 38 GAIPM--DSTALSFCDENSIPVV-VFNLLEPGNIS 69 (88)
Q Consensus 38 g~~~~--d~~a~~la~~~gi~v~-I~ng~~~~~i~ 69 (88)
|..++ ++.|++.|+++++|.+ ||=|.+--.+.
T Consensus 64 g~rg~~Gki~ai~~Are~~iP~LGIClGmQ~avIe 98 (229)
T PRK06186 64 PYRNDDGALTAIRFARENGIPFLGTCGGFQHALLE 98 (229)
T ss_pred CcccHhHHHHHHHHHHHcCCCeEeechhhHHHHHH
Confidence 34455 5889999999999987 78787754443
Done!