BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035512
(372 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 122/272 (44%), Gaps = 35/272 (12%)
Query: 47 ACDVHRHRVTVLNISGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIP-SAIFTTYTLKY 105
ACD +T L++SG + G +P G +P + LK
Sbjct: 292 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 347
Query: 106 VNLRQNQLSGALPSFIFNKS-SLQHLDFTFNTLSGEIPANICSNLP-FLEILSLQENMFH 163
++L N+ SG LP + N S SL LD + N SG I N+C N L+ L LQ N F
Sbjct: 348 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 407
Query: 164 GAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAV 223
G IP LSNC+ L L L++N SG IP +G+L+KL+ L L N L+GEIP+E +
Sbjct: 408 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467
Query: 224 LELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXKLVGTIPTAIFNVSKLKAXXXXXXXXX 283
LE + L N+L +IP + +L G IP I
Sbjct: 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----------------- 510
Query: 284 XXXXXIPDFRLPNLEVLLLWDLENNSFSGFIP 315
RL NL +L L NNSFSG IP
Sbjct: 511 --------GRLENLAIL---KLSNNSFSGNIP 531
Score = 72.4 bits (176), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 45/227 (19%)
Query: 58 LNISGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGAL 117
+++S LTG IP G+IP+ + +L +++L N +G +
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 118 PSFIFNKSSLQHLDF---------------------------------TFNTLSGEIPAN 144
P+ +F +S +F N LS P N
Sbjct: 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614
Query: 145 ICS------------NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPR 192
I S N + L + NM G IP + + YL IL+L +ND SG+IP
Sbjct: 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 674
Query: 193 EIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
E+G+L L L L +N+L G IP+ L +L + L+ NNL IP
Sbjct: 675 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721
Score = 68.6 bits (166), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 91 GSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLP 150
G AI T LK +N+ NQ G +P SLQ+L N +GEIP +
Sbjct: 237 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 294
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY---LGA 207
L L L N F+GA+P +C+ L L+L+ N+FSG +P + L K++GL L
Sbjct: 295 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSF 352
Query: 208 NRLQGEIPREFGNL-AVLELMSLAGNN----------------LQE----------KIPP 240
N GE+P NL A L + L+ NN LQE KIPP
Sbjct: 353 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 412
Query: 241 EIXXXXXXXXXXXXXXKLVGTIPTAIFNVSKLK 273
+ L GTIP+++ ++SKL+
Sbjct: 413 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 445
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 90/245 (36%), Gaps = 45/245 (18%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFN 123
+LTG IP G IP I L + L N SG +P+ + +
Sbjct: 477 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 536
Query: 124 KSSLQHLDFTFNTLSGEIPA-------NICSN-------------------------LPF 151
SL LD N +G IPA I +N L F
Sbjct: 537 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 596
Query: 152 LEILSLQENMFHGAIPSNLSNCTY-------------LRILSLAYNDFSGAIPREIGNLT 198
I S Q N P N+++ Y + L ++YN SG IP+EIG++
Sbjct: 597 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 656
Query: 199 KLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXKL 258
L L LG N + G IP E G+L L ++ L+ N L +IP + L
Sbjct: 657 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 716
Query: 259 VGTIP 263
G IP
Sbjct: 717 SGPIP 721
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 30/238 (12%)
Query: 102 TLKYVNLRQNQLSGA-LPSFIFNKS--SLQHLDFTFNTLSGEIPANICSNLPFLEI---- 154
+L+ ++L N +SGA + ++ + L+HL + N +SG++ + C NL FL++
Sbjct: 152 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 211
Query: 155 ----------------LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLT 198
L + N G +S CT L++L+++ N F G IP L
Sbjct: 212 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 269
Query: 199 KLKGLYLGANRLQGEIPREF-GNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXK 257
L+ L L N+ GEIP G L + L+GN+ +PP
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329
Query: 258 LVGTIPTAIFNVSKLKAXXXXXXXXXXXXXXIPDFRLPNLEV-LLLWDLENNSFSGFI 314
G +P + + K++ +P+ L NL LL DL +N+FSG I
Sbjct: 330 FSGELP--MDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPI 384
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 119/300 (39%), Gaps = 23/300 (7%)
Query: 26 PTNFFAKNWNTNISFCNWTGVACDVHRHRVTVLNISGLNLT---GTIPXXXXXXXXXXXX 82
P +W++N + C + GV C +VT +++S L +
Sbjct: 25 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 82
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGALPSF--IFNKSSLQHLDFTFNTLSGE 140
GS+ S + +L ++L +N LSG + + + + S L+ L+ + NTL +
Sbjct: 83 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 139
Query: 141 IPANICSNLPF--LEILSLQENMFHGA--IPSNLSN-CTYLRILSLAYNDFSGAIPREIG 195
P + L LE+L L N GA + LS+ C L+ L+++ N SG + ++
Sbjct: 140 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 197
Query: 196 NLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXX 255
L+ L + +N IP G+ + L+ + ++GN L I
Sbjct: 198 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 256
Query: 256 XKLVGTIPTAIFNVSKLKAXXXXXXXXXXXXXXIPDFRLPNLEVLLLWDLENNSFSGFIP 315
+ VG IP LK+ IPDF + L DL N F G +P
Sbjct: 257 NQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 105 bits (262), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 122/272 (44%), Gaps = 35/272 (12%)
Query: 47 ACDVHRHRVTVLNISGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIP-SAIFTTYTLKY 105
ACD +T L++SG + G +P G +P + LK
Sbjct: 289 ACDT----LTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKV 344
Query: 106 VNLRQNQLSGALPSFIFNKS-SLQHLDFTFNTLSGEIPANICSNLP-FLEILSLQENMFH 163
++L N+ SG LP + N S SL LD + N SG I N+C N L+ L LQ N F
Sbjct: 345 LDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFT 404
Query: 164 GAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAV 223
G IP LSNC+ L L L++N SG IP +G+L+KL+ L L N L+GEIP+E +
Sbjct: 405 GKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 464
Query: 224 LELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXKLVGTIPTAIFNVSKLKAXXXXXXXXX 283
LE + L N+L +IP + +L G IP I
Sbjct: 465 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWI----------------- 507
Query: 284 XXXXXIPDFRLPNLEVLLLWDLENNSFSGFIP 315
RL NL +L L NNSFSG IP
Sbjct: 508 --------GRLENLAIL---KLSNNSFSGNIP 528
Score = 72.0 bits (175), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 61/227 (26%), Positives = 92/227 (40%), Gaps = 45/227 (19%)
Query: 58 LNISGLNLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGAL 117
+++S LTG IP G+IP+ + +L +++L N +G +
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 118 PSFIFNKSSLQHLDF---------------------------------TFNTLSGEIPAN 144
P+ +F +S +F N LS P N
Sbjct: 552 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 611
Query: 145 ICS------------NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPR 192
I S N + L + NM G IP + + YL IL+L +ND SG+IP
Sbjct: 612 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPD 671
Query: 193 EIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
E+G+L L L L +N+L G IP+ L +L + L+ NNL IP
Sbjct: 672 EVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 68.6 bits (166), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 68/213 (31%), Positives = 95/213 (44%), Gaps = 34/213 (15%)
Query: 91 GSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLP 150
G AI T LK +N+ NQ G +P SLQ+L N +GEIP +
Sbjct: 234 GDFSRAISTCTELKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACD 291
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY---LGA 207
L L L N F+GA+P +C+ L L+L+ N+FSG +P + L K++GL L
Sbjct: 292 TLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT--LLKMRGLKVLDLSF 349
Query: 208 NRLQGEIPREFGNL-AVLELMSLAGNN----------------LQE----------KIPP 240
N GE+P NL A L + L+ NN LQE KIPP
Sbjct: 350 NEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPP 409
Query: 241 EIXXXXXXXXXXXXXXKLVGTIPTAIFNVSKLK 273
+ L GTIP+++ ++SKL+
Sbjct: 410 TLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Score = 66.6 bits (161), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 66/245 (26%), Positives = 90/245 (36%), Gaps = 45/245 (18%)
Query: 64 NLTGTIPXXXXXXXXXXXXXXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFN 123
+LTG IP G IP I L + L N SG +P+ + +
Sbjct: 474 DLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGD 533
Query: 124 KSSLQHLDFTFNTLSGEIPA-------NICSN-------------------------LPF 151
SL LD N +G IPA I +N L F
Sbjct: 534 CRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEF 593
Query: 152 LEILSLQENMFHGAIPSNLSNCTY-------------LRILSLAYNDFSGAIPREIGNLT 198
I S Q N P N+++ Y + L ++YN SG IP+EIG++
Sbjct: 594 QGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMP 653
Query: 199 KLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXKL 258
L L LG N + G IP E G+L L ++ L+ N L +IP + L
Sbjct: 654 YLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNL 713
Query: 259 VGTIP 263
G IP
Sbjct: 714 SGPIP 718
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 62/238 (26%), Positives = 101/238 (42%), Gaps = 30/238 (12%)
Query: 102 TLKYVNLRQNQLSGA-LPSFIFNKS--SLQHLDFTFNTLSGEIPANICSNLPFLEI---- 154
+L+ ++L N +SGA + ++ + L+HL + N +SG++ + C NL FL++
Sbjct: 149 SLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNN 208
Query: 155 ----------------LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLT 198
L + N G +S CT L++L+++ N F G IP L
Sbjct: 209 FSTGIPFLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LK 266
Query: 199 KLKGLYLGANRLQGEIPREF-GNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXXXK 257
L+ L L N+ GEIP G L + L+GN+ +PP
Sbjct: 267 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 326
Query: 258 LVGTIPTAIFNVSKLKAXXXXXXXXXXXXXXIPDFRLPNLEV-LLLWDLENNSFSGFI 314
G +P + + K++ +P+ L NL LL DL +N+FSG I
Sbjct: 327 FSGELP--MDTLLKMRGLKVLDLSFNEFSGELPE-SLTNLSASLLTLDLSSNNFSGPI 381
Score = 52.8 bits (125), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 71/300 (23%), Positives = 119/300 (39%), Gaps = 23/300 (7%)
Query: 26 PTNFFAKNWNTNISFCNWTGVACDVHRHRVTVLNISGLNLT---GTIPXXXXXXXXXXXX 82
P +W++N + C + GV C +VT +++S L +
Sbjct: 22 PDKNLLPDWSSNKNPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESL 79
Query: 83 XXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGALPSF--IFNKSSLQHLDFTFNTLSGE 140
GS+ S + +L ++L +N LSG + + + + S L+ L+ + NTL +
Sbjct: 80 FLSNSHINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--D 136
Query: 141 IPANICSNLPF--LEILSLQENMFHGA--IPSNLSN-CTYLRILSLAYNDFSGAIPREIG 195
P + L LE+L L N GA + LS+ C L+ L+++ N SG + ++
Sbjct: 137 FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVS 194
Query: 196 NLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIXXXXXXXXXXXXX 255
L+ L + +N IP G+ + L+ + ++GN L I
Sbjct: 195 RCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISS 253
Query: 256 XKLVGTIPTAIFNVSKLKAXXXXXXXXXXXXXXIPDFRLPNLEVLLLWDLENNSFSGFIP 315
+ VG IP LK+ IPDF + L DL N F G +P
Sbjct: 254 NQFVGPIPPL-----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 73/232 (31%), Positives = 109/232 (46%), Gaps = 13/232 (5%)
Query: 11 DRDALLALKAHITHDPTNFFAKNWNTNISFCN--WTGVACDV--HRHRVTVLNISGLNLT 66
D+ ALL +K + +PT +W CN W GV CD +RV L++SGLNL
Sbjct: 7 DKQALLQIKKDL-GNPTTL--SSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP 63
Query: 67 GTIPXXXXXXXXXXX---XXXXXXXXXGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFN 123
P G IP AI L Y+ + +SGA+P F+
Sbjct: 64 KPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQ 123
Query: 124 KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYL-RILSLA 182
+L LDF++N LSG +P +I S+LP L ++ N GAIP + + + L ++++
Sbjct: 124 IKTLVTLDFSYNALSGTLPPSI-SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTIS 182
Query: 183 YNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNL 234
N +G IP NL L + L N L+G+ FG+ + + LA N+L
Sbjct: 183 RNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Score = 49.3 bits (116), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/153 (26%), Positives = 61/153 (39%), Gaps = 16/153 (10%)
Query: 136 TLSGEIPANICSNLPFLEILSLQENMFHGA---------------IPSNLSNCTYLRILS 180
TLS +P C N +L +L + + IPS+L+N YL L
Sbjct: 23 TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 181 LA-YNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
+ N+ G IP I LT+L LY+ + G IP + L + + N L +P
Sbjct: 83 IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLP 142
Query: 240 PEIXXXXXXXXXXXXXXKLVGTIPTAIFNVSKL 272
P I ++ G IP + + SKL
Sbjct: 143 PSISSLPNLVGITFDGNRISGAIPDSYGSFSKL 175
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 16/40 (40%), Positives = 23/40 (57%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIP 142
L ++LR N++ G LP + L L+ +FN L GEIP
Sbjct: 246 LNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 32/98 (32%), Positives = 55/98 (56%), Gaps = 6/98 (6%)
Query: 144 NICSNL---PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200
NI +N+ FL L L N +P+ + N + LR+L L++N + ++P E+G+ +L
Sbjct: 238 NISANIFKYDFLTRLYLNGNSL-TELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQL 295
Query: 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKI 238
K Y N + +P EFGNL L+ + + GN L+++
Sbjct: 296 KYFYFFDNMVTT-LPWEFGNLCNLQFLGVEGNPLEKQF 332
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 1/80 (1%)
Query: 155 LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEI 214
L L N F +P LSN +L ++ L+ N S + N+T+L L L NRL+
Sbjct: 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 215 PREFGNLAVLELMSLAGNNL 234
PR F L L L+SL GN++
Sbjct: 95 PRTFDGLKSLRLLSLHGNDI 114
Score = 30.4 bits (67), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 36/88 (40%)
Query: 147 SNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLG 206
SN L ++ L N + SN T L L L+YN PR L L+ L L
Sbjct: 51 SNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110
Query: 207 ANRLQGEIPREFGNLAVLELMSLAGNNL 234
N + F +L+ L +++ N L
Sbjct: 111 GNDISVVPEGAFNDLSALSHLAIGANPL 138
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 43.5 bits (101), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNL 149
S+PS F T L+ + L N+L LP+ IF + +L+ L T N L +P + L
Sbjct: 51 SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQA-LPIGVFDQL 108
Query: 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREI-GNLTKLKGLYLGAN 208
L L L N P + T L LSL YN+ ++P+ + LT LK L L N
Sbjct: 109 VNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNN 167
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
+L+ F L L+ + L N L+ ++P
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLK-RVP 197
Score = 41.2 bits (95), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 52/153 (33%), Positives = 72/153 (47%), Gaps = 14/153 (9%)
Query: 92 SIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLP 150
+IPS I K ++L+ N+LS +LPS F++ + L+ L N L +PA I L
Sbjct: 30 AIPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELK 85
Query: 151 FLEILSLQENMFHGAIP----SNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLG 206
LE L + +N A+P L N LR L N PR +LTKL L LG
Sbjct: 86 NLETLWVTDNKLQ-ALPIGVFDQLVNLAELR---LDRNQLKSLPPRVFDSLTKLTYLSLG 141
Query: 207 ANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
N LQ F L L+ + L N L+ ++P
Sbjct: 142 YNELQSLPKGVFDKLTSLKELRLYNNQLK-RVP 173
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/110 (27%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 123 NKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLA 182
N SSL+ LD + N+L+ C+ + +L+L NM G++ L +++L L
Sbjct: 401 NMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL- 457
Query: 183 YNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232
+N+ +IP+++ +L L+ L + +N+L+ F L L+ + L N
Sbjct: 458 HNNRIMSIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507
Score = 31.6 bits (70), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 32/63 (50%), Gaps = 8/63 (12%)
Query: 152 LEILSLQENMFHGAIPSNLSNC--TYLRILSLAYNDFSG-AIPREIGNLTKLKGLYLGAN 208
LE L + N N+S C LR L L++NDF + +E GNLTKL L L A
Sbjct: 102 LEYLDVSHNRLQ-----NISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAA 156
Query: 209 RLQ 211
+ +
Sbjct: 157 KFR 159
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 92 SIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLP 150
+P + T T+ +NL NQL LP+ F + S L LD FNT+S P +C LP
Sbjct: 18 QVPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 73
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184
L++L+LQ N + CT L L L N
Sbjct: 74 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 107
Score = 28.1 bits (61), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 149 LPFLEILSLQEN----MFHGAIPSN----LSNCTYLRILSLAYNDFSGAIPREI-GNLTK 199
L LEIL LQ N ++ A P L ++L IL+L N F IP E+ +L +
Sbjct: 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 561
Query: 200 LKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232
LK + LG N L F N L+ ++L N
Sbjct: 562 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 594
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 92 SIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLP 150
+P + T T+ +NL NQL LP+ F + S L LD FNT+S P +C LP
Sbjct: 28 QVPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 83
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184
L++L+LQ N + CT L L L N
Sbjct: 84 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 117
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 149 LPFLEILSLQEN----MFHGAIPSN----LSNCTYLRILSLAYNDFSGAIPREI-GNLTK 199
L LEIL LQ N ++ A P L ++L IL+L N F IP E+ +L +
Sbjct: 513 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 571
Query: 200 LKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232
LK + LG N L F N L+ ++L N
Sbjct: 572 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 604
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 38.9 bits (89), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 46/94 (48%), Gaps = 5/94 (5%)
Query: 92 SIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLP 150
+P + T T+ +NL NQL LP+ F + S L LD FNT+S P +C LP
Sbjct: 23 QVPDDLPTNITV--LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPE-LCQKLP 78
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184
L++L+LQ N + CT L L L N
Sbjct: 79 MLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN 112
Score = 28.1 bits (61), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 44/93 (47%), Gaps = 10/93 (10%)
Query: 149 LPFLEILSLQEN----MFHGAIPSN----LSNCTYLRILSLAYNDFSGAIPREI-GNLTK 199
L LEIL LQ N ++ A P L ++L IL+L N F IP E+ +L +
Sbjct: 508 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD-EIPVEVFKDLFE 566
Query: 200 LKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232
LK + LG N L F N L+ ++L N
Sbjct: 567 LKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN 599
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 3/139 (2%)
Query: 95 SAIFTTYTLKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLPFLE 153
SA+ L Y+ L NQL +LP+ +F+K ++L+ L N L +P + L L
Sbjct: 79 SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQS-LPDGVFDKLTNLT 136
Query: 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213
L+L N T L L L+YN LT+LK L L N+L+
Sbjct: 137 YLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSV 196
Query: 214 IPREFGNLAVLELMSLAGN 232
F L L+ + L N
Sbjct: 197 PDGVFDRLTSLQYIWLHDN 215
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 5/134 (3%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
++Y+ L N+L S + ++L +L T N L +P + L L+ L L EN
Sbjct: 65 VRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQS-LPNGVFDKLTNLKELVLVENQL 121
Query: 163 HGAIPSNLSNCTYLRILSLAYNDFSGAIPREI-GNLTKLKGLYLGANRLQGEIPREFGNL 221
T L L+LA+N ++P+ + LT L L L N+LQ F L
Sbjct: 122 QSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKL 180
Query: 222 AVLELMSLAGNNLQ 235
L+ + L N L+
Sbjct: 181 TQLKDLRLYQNQLK 194
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 36.6 bits (83), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 34/105 (32%), Positives = 42/105 (40%), Gaps = 1/105 (0%)
Query: 106 VNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGA 165
+NL NQL P+ S L LD FN++S P +C LP L++L+LQ N
Sbjct: 30 LNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPE-LCQILPLLKVLNLQHNELSQI 88
Query: 166 IPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210
CT L L L N N L L L N L
Sbjct: 89 SDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGL 133
Score = 28.5 bits (62), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 35/78 (44%), Gaps = 6/78 (7%)
Query: 153 EILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212
++L+ E+ F G +NL+ L L+YN+ L L+ L L N +Q
Sbjct: 233 QLLATSESTFSGLKWTNLTQ------LDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQR 286
Query: 213 EIPREFGNLAVLELMSLA 230
PR F L+ L +SL
Sbjct: 287 LSPRSFYGLSNLRYLSLK 304
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 36.2 bits (82), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 41/143 (28%), Positives = 63/143 (44%), Gaps = 6/143 (4%)
Query: 91 GSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLP 150
S+P+ I T + Y L NQ++ P + +L+ L N L G +P + +L
Sbjct: 32 ASVPAGIPTNAQILY--LHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLT 88
Query: 151 FLEILSLQENMFHGAIPSNL-SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANR 209
L +L L N +PS + +L+ L + N + +PR I LT L L L N+
Sbjct: 89 QLTVLDLGTNQL-TVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQ 146
Query: 210 LQGEIPREFGNLAVLELMSLAGN 232
L+ F L+ L L GN
Sbjct: 147 LKSIPHGAFDRLSSLTHAYLFGN 169
Score = 32.0 bits (71), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 4/73 (5%)
Query: 163 HGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPRE-FGNL 221
H ++P+ + T +IL L N + P +L LK LYLG+N+L G +P F +L
Sbjct: 31 HASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSL 87
Query: 222 AVLELMSLAGNNL 234
L ++ L N L
Sbjct: 88 TQLTVLDLGTNQL 100
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 36.2 bits (82), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 227
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 228 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 282 TALTNLELNENQLEDISP 299
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 36.2 bits (82), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 228
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 229 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 283 TALTNLELNENQLEDISP 300
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 228
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 229 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 283 TALTNLELNENQLEDISP 300
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 174 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 228
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 229 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 282
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 283 TALTNLELNENQLEDISP 300
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 35.8 bits (81), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 173 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 227
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 228 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 281
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 282 TALTNLELNENQLEDISP 299
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 35.8 bits (81), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 178 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 232
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 233 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 286
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 287 TALTNLELNENQLEDISP 304
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 35.8 bits (81), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 64/138 (46%), Gaps = 11/138 (7%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
TL+ +++ N++S S + ++L+ L T N +S P I +NL + LSL N
Sbjct: 177 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGILTNL---DELSLNGNQ 231
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
L++ T L L LA N S P + LTKL L LGAN++ P L
Sbjct: 232 LKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGL 285
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L N L++ P
Sbjct: 286 TALTNLELNENQLEDISP 303
>pdb|2WQX|A Chain A, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQX|B Chain B, Inlb321_4r: S199r, D200r, G206r, A227r, C242a Mutant Of
The Listeria Monocytogenes Inlb Internalin Domain
Length = 289
Score = 35.4 bits (80), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N +P + LTKL+ LYL N
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQIRRIVP--LARLTKLQNLYLSKN 186
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ R NL VLEL S
Sbjct: 187 HISDLRALRGLKNLDVLELFS 207
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 34.7 bits (78), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 12/135 (8%)
Query: 111 NQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPS-- 168
NQL G LP+F ++ L L+ +N ++ EIPAN C +E LS N IP+
Sbjct: 340 NQLEGKLPAF-GSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIF 396
Query: 169 NLSNCTYLRILSLAYNDFSGAIPREIGNL--TKLKGLYLG----ANRLQGEIPRE-FGNL 221
+ + + + +YN+ + L T KG+ + +N + P+E F
Sbjct: 397 DAKSVSVXSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG 456
Query: 222 AVLELMSLAGNNLQE 236
+ L ++L GN L E
Sbjct: 457 SPLSSINLXGNXLTE 471
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 153 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 208
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 209 HISDLRALAGLKNLDVLELFS 229
>pdb|2UZX|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZX|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Crystal Form I
pdb|2UZY|A Chain A, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2UZY|C Chain C, Structure Of The Human Receptor Tyrosine Kinase Met In
Complex With The Listeria Monocytogenes Invasion Protein
Inlb: Low Resolution, Crystal Form Ii
pdb|2WQU|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|C Chain C, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|D Chain D, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|E Chain E, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQU|F Chain F, Internalin Domain Of Listeria Monocytogenes Inlb:
Triclinic Crystal Form
pdb|2WQV|A Chain A, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
pdb|2WQV|B Chain B, Internalin Domain Of Listeria Monocytogenes Inlb:
Rhombohedral Crystal Form
Length = 289
Score = 34.3 bits (77), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 131 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 186
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 187 HISDLRALAGLKNLDVLELFS 207
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 34.3 bits (77), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 48/150 (32%), Positives = 72/150 (48%), Gaps = 15/150 (10%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDF-TFNTLS--GEIPANIC 146
+IP+ F + LK + LR N + ++PS+ FN+ SL+ LD LS E
Sbjct: 126 TIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGL 184
Query: 147 SNLPFL--EILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY 204
SNL +L + +L+E IP NL+ L L L+ N S P L L+ L+
Sbjct: 185 SNLRYLNLAMCNLRE------IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLW 237
Query: 205 LGANRLQGEIPREFGNLAVLELMSLAGNNL 234
+ +++Q F NL L ++LA NNL
Sbjct: 238 MIQSQIQVIERNAFDNLQSLVEINLAHNNL 267
>pdb|1H6T|A Chain A, Internalin B: Crystal Structure Of Fused N-Terminal
Domains
Length = 291
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 133 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 189 HISDLRALAGLKNLDVLELFS 209
>pdb|1D0B|A Chain A, Internalin B Leucine Rich Repeat Domain
Length = 213
Score = 34.3 bits (77), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 183
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 184 HISDLRALAGLKNLDVLELFS 204
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 33.9 bits (76), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 15/94 (15%)
Query: 150 PFLEILSLQENMFHGAIPSNL-----SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY 204
P LE L L ENM A + L ++L++L L +N + P +LT L+GL
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 205 LGANRL----QGEIPREFGNLAVLELMSLAGNNL 234
L +NRL ++P A LE++ ++ N L
Sbjct: 511 LNSNRLTVLSHNDLP------ANLEILDISRNQL 538
>pdb|2Y5Q|A Chain A, Listeria Monocytogenes Inlb (Internalin B) Residues 36-392
Length = 362
Score = 33.9 bits (76), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 148 NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGA 207
+LP LE L L N + LS T L LSL N S +P + LTKL+ LYL
Sbjct: 132 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 208 NRLQG-EIPREFGNLAVLELMS 228
N + NL VLEL S
Sbjct: 188 NHISDLRALAGLKNLDVLELFS 209
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 33.9 bits (76), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 62/143 (43%), Gaps = 3/143 (2%)
Query: 91 GSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLP 150
+PS + TLK + L N+ N SL HL NT E+ NL
Sbjct: 291 SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350
Query: 151 FLEILSLQENMFHGAIPSNLS--NCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
L L L + + NL N ++L+ L+L+YN+ +L+ L L
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410
Query: 209 RLQGEIPRE-FGNLAVLELMSLA 230
RL+ + + F NL +L++++L+
Sbjct: 411 RLKVKDAQSPFQNLHLLKVLNLS 433
Score = 32.3 bits (72), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 68/153 (44%), Gaps = 14/153 (9%)
Query: 93 IPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANIC----S 147
I S F ++ L+ ++L LS LPS + S+L+ L LS N+C S
Sbjct: 269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKL-----VLSANKFENLCQISAS 322
Query: 148 NLPFLEILSLQENMFHGAIPSN-LSNCTYLRILSLAYNDF--SGAIPREIGNLTKLKGLY 204
N P L LS++ N + + L N LR L L+++D S ++ NL+ L+ L
Sbjct: 323 NFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLN 382
Query: 205 LGANRLQGEIPREFGNLAVLELMSLAGNNLQEK 237
L N F LEL+ LA L+ K
Sbjct: 383 LSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
>pdb|1OTN|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 207 HISDLRALAGLKNLDVLELFS 227
>pdb|1OTO|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 207 HISDLRALAGLKNLDVLELFS 227
>pdb|1OTM|A Chain A, Calcium-Binding Mutant Of The Internalin B Lrr Domain
Length = 236
Score = 33.5 bits (75), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 151 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 206
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 207 HISDLRALAGLKNLDVLELFS 227
>pdb|1M9S|A Chain A, Crystal Structure Of Internalin B (Inlb), A Listeria
Monocytogenes Virulence Protein Containing Sh3-Like
Domains
Length = 605
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 38/82 (46%), Gaps = 5/82 (6%)
Query: 148 NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGA 207
+LP LE L L N + LS T L LSL N S +P + LTKL+ LYL
Sbjct: 129 HLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 184
Query: 208 NRLQG-EIPREFGNLAVLELMS 228
N + NL VLEL S
Sbjct: 185 NHISDLRALAGLKNLDVLELFS 206
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 33.1 bits (74), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 44/157 (28%), Positives = 65/157 (41%), Gaps = 34/157 (21%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLS--GALPSFIFNKSSLQHLDFTFN---TLSGEIPANI 145
S+P +F T L ++L N LS G F +SL++LD +FN T+S
Sbjct: 42 SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-- 99
Query: 146 CSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYL 205
L LE L Q H + +L + +L Y D S R N G++
Sbjct: 100 ---LEQLEHLDFQ----HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFN-----GIFN 147
Query: 206 GANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEI 242
G L+ LE++ +AGN+ QE P+I
Sbjct: 148 G--------------LSSLEVLKMAGNSFQENFLPDI 170
>pdb|2WQW|A Chain A, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
pdb|2WQW|B Chain B, Double-Disulfide Cross-Linked Crystal Dimer Of The
Listeria Monocytogenes Inlb Internalin Domain
Length = 286
Score = 32.7 bits (73), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 32/81 (39%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP LE L L N + LS T L LSL N S +P + LTKL+ LYL N
Sbjct: 128 LPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LACLTKLQNLYLSKN 183
Query: 209 RLQG-EIPREFGNLAVLELMS 228
+ NL VLEL S
Sbjct: 184 HISDLRALCGLKNLDVLELFS 204
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 32.7 bits (73), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 102 TLKYVNLRQNQLS--GALPSFIFNKSSLQHLDFTFN---TLSGEIPANICSNLPFLEILS 156
+L++++L +N LS G F +SL++LD +FN T+S L LE L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-----LEQLEHLD 402
Query: 157 LQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPR 216
Q H + +L + +L Y D S R G++ G
Sbjct: 403 FQ----HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNG---------- 443
Query: 217 EFGNLAVLELMSLAGNNLQEKIPPEI 242
L+ LE++ +AGN+ QE P+I
Sbjct: 444 ----LSSLEVLKMAGNSFQENFLPDI 465
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNL 149
++ A F T L ++NL NQL L + +F+ + L L N L+ +P + +L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL 106
Query: 150 PFLEILSLQENMFHGAIPSNL-SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
L+ L L N ++PS + T L+ L L N LT L+ L L N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 209 RLQGEIPREFGNLAVLELMSLAGNN 233
+LQ F L L+ ++L GN
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 125 SSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184
+ L L+ +N L + A + +L L L L N + T L L L N
Sbjct: 59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 DFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQ 235
LTKLK L L N+LQ F L L+ +SL+ N LQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 50/116 (43%), Gaps = 4/116 (3%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNL 149
S+P+ +F T LK + L +NQL +LP +F+K ++L +L N L +P + L
Sbjct: 99 SLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLYLYHNQLQS-LPKGVFDKL 156
Query: 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYL 205
L L L N T L+ LSL N LT L ++L
Sbjct: 157 TNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPDGVFDRLTSLTHIWL 212
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 42/145 (28%), Positives = 64/145 (44%), Gaps = 6/145 (4%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNL 149
++ A F T L ++NL NQL L + +F+ + L L N L+ +P + +L
Sbjct: 49 TLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHL 106
Query: 150 PFLEILSLQENMFHGAIPSNL-SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
L+ L L N ++PS + T L+ L L N LT L+ L L N
Sbjct: 107 TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTN 165
Query: 209 RLQGEIPREFGNLAVLELMSLAGNN 233
+LQ F L L+ ++L GN
Sbjct: 166 QLQSVPHGAFDRLGKLQTITLFGNQ 190
Score = 31.2 bits (69), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 44/111 (39%), Gaps = 1/111 (0%)
Query: 125 SSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184
+ L L+ +N L + A + +L L L L N + T L L L N
Sbjct: 59 TKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN 117
Query: 185 DFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQ 235
LTKLK L L N+LQ F L L+ +SL+ N LQ
Sbjct: 118 QLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQ 168
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 32.7 bits (73), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 62/146 (42%), Gaps = 33/146 (22%)
Query: 102 TLKYVNLRQNQLS--GALPSFIFNKSSLQHLDFTFN---TLSGEIPANICSNLPFLEILS 156
+L++++L +N LS G F +SL++LD +FN T+S L LE L
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLG-----LEQLEHLD 402
Query: 157 LQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPR 216
Q H + +L + +L Y D S R G++ G
Sbjct: 403 FQ----HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNG---------- 443
Query: 217 EFGNLAVLELMSLAGNNLQEKIPPEI 242
L+ LE++ +AGN+ QE P+I
Sbjct: 444 ----LSSLEVLKMAGNSFQENFLPDI 465
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 32.3 bits (72), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 33/127 (25%), Positives = 56/127 (44%), Gaps = 5/127 (3%)
Query: 108 LRQNQLS--GALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGA 165
L+ NQL + SLQ LD + N++S + CS L L++ N+
Sbjct: 355 LQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414
Query: 166 IPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLE 225
I L +++L L N +IP+++ L L+ L + +N+L+ F L L+
Sbjct: 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQ 471
Query: 226 LMSLAGN 232
+ L N
Sbjct: 472 KIWLHTN 478
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 32.3 bits (72), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 55/130 (42%), Gaps = 3/130 (2%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L ++L NQL +LP +L LD +FN L+ +P L L+ L L+ N
Sbjct: 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNEL 136
Query: 163 HGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLA 222
P L+ L LSLA ND + + L L L L N L IP+ F
Sbjct: 137 KTLPPGLLTPTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSH 195
Query: 223 VLELMSLAGN 232
+L L GN
Sbjct: 196 LLPFAFLHGN 205
Score = 29.6 bits (65), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA N+L E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNDLTE 162
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 31.6 bits (70), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 40/84 (47%), Gaps = 1/84 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L + L++NQL+G P+ S +Q L N + EI + L L+ L+L +N
Sbjct: 56 LVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNLYDNQI 114
Query: 163 HGAIPSNLSNCTYLRILSLAYNDF 186
+P + + L L+LA N F
Sbjct: 115 SCVMPGSFEHLNSLTSLNLASNPF 138
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 31.6 bits (70), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 77 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 135
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA NNL E
Sbjct: 136 ELKTLPPGLLTPTPKLEKLSLANNNLTE 163
Score = 27.7 bits (60), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 127 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 185
Query: 163 H 163
+
Sbjct: 186 Y 186
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 31.2 bits (69), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA NNL E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 28.1 bits (61), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 163 H 163
+
Sbjct: 185 Y 185
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 31.2 bits (69), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 61/146 (41%), Gaps = 33/146 (22%)
Query: 102 TLKYVNLRQNQLS--GALPSFIFNKSSLQHLDFTFN---TLSGEIPANICSNLPFLEILS 156
+L++++L +N LS G F SL++LD +FN T+S L LE L
Sbjct: 372 SLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLG-----LEQLEHLD 426
Query: 157 LQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPR 216
Q H + +L + +L Y D S R G++ G
Sbjct: 427 FQ----HSNLKQMSEFSVFLSLRNLIYLDISHTHTR-----VAFNGIFNG---------- 467
Query: 217 EFGNLAVLELMSLAGNNLQEKIPPEI 242
L+ LE++ +AGN+ QE P+I
Sbjct: 468 ----LSSLEVLKMAGNSFQENFLPDI 489
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA NNL E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTE 162
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 31.2 bits (69), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA NNL E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 28.1 bits (61), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 163 H 163
+
Sbjct: 185 Y 185
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 31.2 bits (69), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 39/88 (44%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA NNL E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNNLTE 162
Score = 28.1 bits (61), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 163 H 163
+
Sbjct: 185 Y 185
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 31.2 bits (69), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 68/153 (44%), Gaps = 6/153 (3%)
Query: 91 GSIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNL 149
+ S+ F +T ++ ++L L+G LPS I +SL+ L N+ N S
Sbjct: 266 SDLSSSTFRCFTRVQELDLTAAHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAAS-F 323
Query: 150 PFLEILSLQENMFHGAIPSN-LSNCTYLRILSLAYNDF--SGAIPREIGNLTKLKGLYLG 206
P L L ++ NM + + L L+ L L+++D S ++ NL L+ L L
Sbjct: 324 PSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLS 383
Query: 207 ANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
N G + F LEL+ +A +L K P
Sbjct: 384 YNEPLGLEDQAFKECPQLELLDVAFTHLHVKAP 416
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 30.4 bits (67), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 174 TYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233
YLR L+L+YN S + L +L+ + L +L P F L L +++++GN
Sbjct: 248 VYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307
Query: 234 L 234
L
Sbjct: 308 L 308
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 53/115 (46%), Gaps = 13/115 (11%)
Query: 128 QHLD-------FTFNTLS-GEIPANICSNLPFLEILSLQENMFHGAIPSNL-SNCTYLRI 178
QHLD F F T IPAN+ +++ L L L+ N+ +PS+L + L
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANI--EEMPSHLFDDLENLES 174
Query: 179 LSLAYNDFSGAIPREI-GNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232
+ N +PR I G + KLK L L +N+L+ F L L+ + L N
Sbjct: 175 IEFGSNKLR-QMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTN 228
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 30.0 bits (66), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 91 GSIPSAIFTTYTL-KYVNLRQN-QLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSN 148
I +A FT L + ++L N QL P+ L L L E+ +
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 126
Query: 149 LPFLEILSLQENMFHGAIPS----NLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY 204
L L+ L LQ+N A+P +L N T+ L L N S R L L L
Sbjct: 127 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTH---LFLHGNRISSVPERAFRGLHSLDRLL 182
Query: 205 LGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPE 241
L NR+ P F +L L + L NNL +P E
Sbjct: 183 LHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTE 218
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 30.0 bits (66), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 59/131 (45%), Gaps = 3/131 (2%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
+K +L ++++ L S + + L+ L N ++ +I N L L L+L +N F
Sbjct: 277 VKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLNLSQN-F 334
Query: 163 HGAIPSNL-SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
G+I S + N L +L L+YN + L LK L L N+L+ F L
Sbjct: 335 LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394
Query: 222 AVLELMSLAGN 232
L+ + L N
Sbjct: 395 TSLQKIWLHTN 405
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 30.0 bits (66), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 46/157 (29%), Positives = 62/157 (39%), Gaps = 12/157 (7%)
Query: 91 GSIPSAIFTTYTL-KYVNLRQN-QLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSN 148
I +A FT L + ++L N QL P+ L L L E+ +
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127
Query: 149 LPFLEILSLQENMFHGAIPS----NLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLY 204
L L+ L LQ+N A+P +L N T+ L L N S R L L L
Sbjct: 128 LAALQYLYLQDNALQ-ALPDDTFRDLGNLTH---LFLHGNRISSVPERAFRGLHSLDRLL 183
Query: 205 LGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPE 241
L NR+ P F +L L + L NNL +P E
Sbjct: 184 LHQNRVAHVHPHAFRDLGRLMTLYLFANNL-SALPTE 219
>pdb|2O6R|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B61
Length = 177
Score = 29.6 bits (65), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 5/96 (5%)
Query: 141 IPANICSNLPFLEILSLQ-ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTK 199
+P I S+ LE+ S + +++ HG T L LSL+ N LTK
Sbjct: 22 VPTGIPSSATRLELESNKLQSLPHGV----FDKLTQLTKLSLSQNQIQSLPDGVFDKLTK 77
Query: 200 LKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQ 235
L LYL N+LQ F L L+ ++L N L+
Sbjct: 78 LTILYLHENKLQSLPNGVFDKLTQLKELALDTNQLK 113
Score = 28.1 bits (61), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 29/103 (28%), Positives = 46/103 (44%), Gaps = 4/103 (3%)
Query: 92 SIPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNL 149
S+P +F T L ++L QNQ+ +LP +F+K + L L N L +P + L
Sbjct: 42 SLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKL 99
Query: 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPR 192
L+ L+L N T L+ + L N + + PR
Sbjct: 100 TQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 29.3 bits (64), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA N L E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 66/152 (43%), Gaps = 8/152 (5%)
Query: 93 IPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPF 151
I S F +T L+ ++L L G LPS + + L+ L + N ++ +N P
Sbjct: 266 ISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD-QLCQISAANFPS 323
Query: 152 LEILSLQENM--FHGAIPSNLSNCTYLRILSLAYNDF--SGAIPREIGNLTKLKGLYLGA 207
L L ++ N+ H + L L+ L L++ND S ++ NL+ L+ L L
Sbjct: 324 LTHLYIRGNVKKLHLGVGC-LEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSH 382
Query: 208 NRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239
N G + F LEL+ LA L P
Sbjct: 383 NEPLGLQSQAFKECPQLELLDLAFTRLHINAP 414
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 29.3 bits (64), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA N L E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTE 162
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 29.3 bits (64), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA N L E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 28.1 bits (61), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 163 H 163
+
Sbjct: 185 Y 185
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANR 209
P +L LQ N + N L L L N S P L KL+ LYL N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 210 LQGEIPREF 218
L+ E+P +
Sbjct: 112 LK-ELPEKM 119
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 29.3 bits (64), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 38/88 (43%), Gaps = 1/88 (1%)
Query: 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGAN 208
LP L L L N ++P L +L +++N + + L +L+ LYL N
Sbjct: 76 LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGN 134
Query: 209 RLQGEIPREFGNLAVLELMSLAGNNLQE 236
L+ P LE +SLA N L E
Sbjct: 135 ELKTLPPGLLTPTPKLEKLSLANNQLTE 162
Score = 27.7 bits (60), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Query: 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF 162
L+ + L+ N+L P + L+ L N L+ E+PA + + L L+ L LQEN
Sbjct: 126 LQELYLKGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSL 184
Query: 163 H 163
+
Sbjct: 185 Y 185
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 29.3 bits (64), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Query: 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANR 209
P +L LQ N + N L L L N S P L KL+ LYL N+
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 210 LQGEIPREF 218
L+ E+P +
Sbjct: 112 LK-ELPEKM 119
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 28.9 bits (63), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
Query: 96 AIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLPFL 152
+F + T L Y+NL NQL+ ALP +F+K + L HL N L IP + NL L
Sbjct: 58 GVFDSLTQLTYLNLAVNQLT-ALPVGVFDKLTKLTHLALHINQLK-SIPMGVFDNLKSL 114
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 28.9 bits (63), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 61/138 (44%), Gaps = 9/138 (6%)
Query: 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM 161
+L Y NQ++ P + N + L L N ++ P S L +LEI + Q +
Sbjct: 200 SLHYFTAYVNQITDITP--VANXTRLNSLKIGNNKITDLSPLANLSQLTWLEIGTNQISD 257
Query: 162 FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNL 221
+ + + T L+ L++ N S + NL++L L+L N+L E G L
Sbjct: 258 INA-----VKDLTKLKXLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDXEVIGGL 310
Query: 222 AVLELMSLAGNNLQEKIP 239
L + L+ N++ + P
Sbjct: 311 TNLTTLFLSQNHITDIRP 328
>pdb|3ZYI|A Chain A, Netring2 In Complex With Ngl2
Length = 452
Score = 28.5 bits (62), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 64/144 (44%), Gaps = 5/144 (3%)
Query: 93 IPSAIFTTYT-LKYVNLRQNQLSGALPSFIFNK-SSLQHLDFTFNTLSGEIPANICSNLP 150
IPS F + L+ + LR N + ++PS+ FN+ SL LD I L
Sbjct: 138 IPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLF 196
Query: 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210
L+ L+L M + NL+ L L ++ N F P L+ LK L++ +++
Sbjct: 197 NLKYLNL--GMCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 211 QGEIPREFGNLAVLELMSLAGNNL 234
F LA L ++LA NNL
Sbjct: 255 SLIERNAFDGLASLVELNLAHNNL 278
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 28.5 bits (62), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 197 LTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQ 235
LT L LYLG N+LQ F L L ++L+ N LQ
Sbjct: 51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ 89
>pdb|1A5I|A Chain A, Catalytic Domain Of Vampire Bat (Desmodus Rotundus) Saliva
Plasminogen Activator In Complex With Egr-Cmk
(Glu-Gly-Arg Chloromethyl Ketone)
Length = 265
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 27/51 (52%)
Query: 95 SAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANI 145
S+ F + LK ++R S P F+FNK+ ++ +T SGEI N+
Sbjct: 158 SSPFYSEQLKEGHVRLYPSSRCAPKFLFNKTVTNNMLCAGDTRSGEIYPNV 208
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.137 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,461,097
Number of Sequences: 62578
Number of extensions: 282918
Number of successful extensions: 781
Number of sequences better than 100.0: 79
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 574
Number of HSP's gapped (non-prelim): 156
length of query: 372
length of database: 14,973,337
effective HSP length: 100
effective length of query: 272
effective length of database: 8,715,537
effective search space: 2370626064
effective search space used: 2370626064
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)