Query 035512
Match_columns 372
No_of_seqs 215 out of 3528
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:35:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035512.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035512hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 5.1E-40 1.1E-44 333.7 27.7 349 8-371 27-376 (968)
2 PLN00113 leucine-rich repeat r 100.0 4.7E-34 1E-38 290.2 21.8 314 52-371 139-472 (968)
3 KOG4194 Membrane glycoprotein 100.0 9E-34 2E-38 251.4 3.8 308 54-371 126-436 (873)
4 KOG4194 Membrane glycoprotein 100.0 1.9E-32 4.1E-37 243.0 3.6 306 53-366 78-407 (873)
5 KOG0444 Cytoskeletal regulator 99.9 3.1E-28 6.8E-33 218.3 -4.1 293 54-363 56-374 (1255)
6 KOG0444 Cytoskeletal regulator 99.9 2.8E-26 6E-31 205.9 -4.5 304 52-372 31-336 (1255)
7 KOG0472 Leucine-rich repeat pr 99.9 1.2E-25 2.6E-30 191.8 -4.9 289 57-365 164-542 (565)
8 PLN03210 Resistant to P. syrin 99.9 5.8E-21 1.3E-25 195.4 24.7 286 53-362 589-904 (1153)
9 KOG0472 Leucine-rich repeat pr 99.8 2.3E-24 5E-29 183.9 -11.3 266 54-365 46-311 (565)
10 PLN03210 Resistant to P. syrin 99.8 2.6E-19 5.6E-24 183.4 23.0 277 69-369 580-887 (1153)
11 KOG4237 Extracellular matrix p 99.8 2.2E-22 4.8E-27 171.5 -3.7 279 53-336 67-360 (498)
12 KOG4237 Extracellular matrix p 99.8 2E-22 4.4E-27 171.7 -4.8 296 56-364 49-359 (498)
13 PRK15387 E3 ubiquitin-protein 99.8 2.9E-19 6.4E-24 171.3 15.7 262 54-369 202-463 (788)
14 KOG0618 Serine/threonine phosp 99.8 1.3E-21 2.9E-26 183.0 -3.0 273 54-336 46-444 (1081)
15 KOG0618 Serine/threonine phosp 99.8 2.6E-21 5.7E-26 181.0 -4.6 290 53-361 219-510 (1081)
16 PRK15370 E3 ubiquitin-protein 99.7 2.1E-17 4.6E-22 159.4 15.0 248 52-335 177-428 (754)
17 cd00116 LRR_RI Leucine-rich re 99.7 6.5E-20 1.4E-24 163.8 -2.2 283 58-363 3-319 (319)
18 cd00116 LRR_RI Leucine-rich re 99.7 1.1E-19 2.3E-24 162.4 -1.5 265 81-365 2-292 (319)
19 PRK15387 E3 ubiquitin-protein 99.7 5.2E-17 1.1E-21 155.9 16.0 242 53-340 222-463 (788)
20 PRK15370 E3 ubiquitin-protein 99.7 2.8E-17 6E-22 158.6 11.9 321 5-364 58-428 (754)
21 KOG0617 Ras suppressor protein 99.6 4.3E-17 9.4E-22 124.1 -4.3 154 52-211 32-186 (264)
22 KOG0617 Ras suppressor protein 99.5 3E-16 6.5E-21 119.6 -5.3 156 74-259 30-186 (264)
23 PLN03150 hypothetical protein; 99.5 6.6E-13 1.4E-17 127.8 15.1 151 6-162 368-527 (623)
24 KOG1909 Ran GTPase-activating 99.2 2.2E-12 4.7E-17 109.4 0.2 86 52-137 29-132 (382)
25 KOG1909 Ran GTPase-activating 99.2 9.2E-13 2E-17 111.7 -2.7 253 71-335 24-311 (382)
26 KOG3207 Beta-tubulin folding c 99.2 2.8E-12 6E-17 111.8 -1.2 207 76-282 120-338 (505)
27 KOG4658 Apoptotic ATPase [Sign 99.1 6E-11 1.3E-15 117.0 5.0 226 53-284 545-784 (889)
28 KOG3207 Beta-tubulin folding c 99.1 1.5E-11 3.3E-16 107.3 0.7 209 149-364 120-339 (505)
29 KOG1259 Nischarin, modulator o 99.1 2.1E-11 4.5E-16 101.6 1.1 133 196-338 282-415 (490)
30 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 92.1 5.7 127 74-205 16-147 (175)
31 PF14580 LRR_9: Leucine-rich r 99.1 5.9E-11 1.3E-15 94.2 2.1 126 223-358 20-147 (175)
32 COG4886 Leucine-rich repeat (L 99.0 4.4E-10 9.6E-15 103.4 7.2 192 81-282 97-289 (394)
33 COG4886 Leucine-rich repeat (L 99.0 9.9E-10 2.1E-14 101.1 7.5 181 74-263 113-294 (394)
34 KOG4658 Apoptotic ATPase [Sign 99.0 4E-10 8.6E-15 111.3 4.9 200 54-260 524-731 (889)
35 KOG0532 Leucine-rich repeat (L 99.0 2.8E-11 6E-16 109.0 -3.0 196 75-281 73-271 (722)
36 KOG1259 Nischarin, modulator o 99.0 2.7E-10 5.8E-15 95.1 2.7 126 151-282 285-411 (490)
37 KOG0532 Leucine-rich repeat (L 98.9 2.2E-11 4.7E-16 109.7 -5.8 172 54-235 76-247 (722)
38 PLN03150 hypothetical protein; 98.8 1.5E-08 3.4E-13 97.8 8.9 106 103-209 420-526 (623)
39 PF13855 LRR_8: Leucine rich r 98.8 5.8E-09 1.2E-13 68.1 4.1 59 223-281 2-60 (61)
40 PF13855 LRR_8: Leucine rich r 98.8 4.2E-09 9.1E-14 68.8 2.8 59 300-363 3-61 (61)
41 KOG0531 Protein phosphatase 1, 98.7 1.4E-09 3.1E-14 100.3 -0.5 244 74-336 69-319 (414)
42 KOG0531 Protein phosphatase 1, 98.6 3.4E-09 7.4E-14 97.8 -1.2 243 54-311 73-318 (414)
43 KOG2120 SCF ubiquitin ligase, 98.5 8.8E-10 1.9E-14 91.9 -7.1 184 174-362 185-374 (419)
44 KOG1859 Leucine-rich repeat pr 98.5 7.1E-10 1.5E-14 102.9 -9.4 128 223-364 165-292 (1096)
45 KOG2982 Uncharacterized conser 98.5 3.5E-08 7.7E-13 82.5 1.2 234 102-359 46-287 (418)
46 KOG2120 SCF ubiquitin ligase, 98.5 1.3E-09 2.8E-14 90.9 -7.6 57 127-183 187-243 (419)
47 KOG2982 Uncharacterized conser 98.4 4.3E-08 9.4E-13 82.0 0.2 85 76-160 70-156 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.4 4.2E-08 9E-13 81.1 -0.2 162 121-282 88-284 (388)
49 PF08263 LRRNT_2: Leucine rich 98.3 7.5E-07 1.6E-11 53.2 4.1 40 9-49 2-43 (43)
50 KOG4341 F-box protein containi 98.2 2.4E-08 5.1E-13 87.2 -5.6 84 78-161 139-227 (483)
51 KOG1859 Leucine-rich repeat pr 98.2 6.3E-08 1.4E-12 90.3 -3.9 182 118-311 102-292 (1096)
52 KOG4341 F-box protein containi 98.2 2.1E-08 4.5E-13 87.6 -6.9 107 102-208 139-252 (483)
53 COG5238 RNA1 Ran GTPase-activa 98.1 2.2E-07 4.8E-12 76.9 -2.7 217 148-365 28-286 (388)
54 KOG1644 U2-associated snRNP A' 98.0 1.5E-05 3.1E-10 63.4 6.3 104 101-207 42-149 (233)
55 PF13306 LRR_5: Leucine rich r 97.9 4.4E-05 9.5E-10 58.1 7.5 121 146-272 8-128 (129)
56 KOG3665 ZYG-1-like serine/thre 97.9 2.5E-06 5.5E-11 82.7 0.4 138 222-365 122-264 (699)
57 PF12799 LRR_4: Leucine Rich r 97.9 7.4E-06 1.6E-10 49.0 2.0 37 323-365 2-38 (44)
58 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.3E-10 46.7 2.8 36 78-114 2-37 (44)
59 KOG4579 Leucine-rich repeat (L 97.8 1.1E-06 2.3E-11 65.3 -3.7 106 201-312 30-137 (177)
60 PF13306 LRR_5: Leucine rich r 97.7 0.00014 3.1E-09 55.3 7.6 121 121-248 8-128 (129)
61 KOG1644 U2-associated snRNP A' 97.7 9.1E-05 2E-09 59.0 6.3 59 150-210 42-100 (233)
62 PRK15386 type III secretion pr 97.6 0.00051 1.1E-08 61.9 10.4 138 171-332 49-187 (426)
63 KOG4579 Leucine-rich repeat (L 97.6 5.8E-06 1.3E-10 61.5 -1.5 82 54-138 54-136 (177)
64 KOG3665 ZYG-1-like serine/thre 97.6 3.6E-05 7.8E-10 74.8 2.1 83 124-208 147-230 (699)
65 PRK15386 type III secretion pr 97.6 0.0007 1.5E-08 61.0 10.1 53 53-111 52-104 (426)
66 KOG1947 Leucine rich repeat pr 97.4 2.3E-05 4.9E-10 74.2 -1.8 110 76-185 187-306 (482)
67 KOG1947 Leucine rich repeat pr 97.3 2.5E-05 5.4E-10 73.9 -2.6 186 53-248 188-389 (482)
68 KOG2739 Leucine-rich acidic nu 97.0 0.00041 8.8E-09 57.7 2.0 40 243-282 62-103 (260)
69 KOG2739 Leucine-rich acidic nu 96.9 0.00045 9.8E-09 57.4 1.7 103 53-157 43-150 (260)
70 KOG2123 Uncharacterized conser 96.9 3.1E-05 6.7E-10 64.7 -5.3 103 247-357 20-123 (388)
71 PF00560 LRR_1: Leucine Rich R 96.2 0.002 4.2E-08 32.0 0.6 19 352-371 1-19 (22)
72 KOG2123 Uncharacterized conser 95.9 0.00024 5.1E-09 59.6 -5.3 82 149-234 18-100 (388)
73 PF13504 LRR_7: Leucine rich r 95.0 0.012 2.6E-07 27.0 0.9 15 351-365 1-15 (17)
74 KOG3864 Uncharacterized conser 94.2 0.0063 1.4E-07 48.8 -1.8 81 54-134 102-185 (221)
75 KOG4308 LRR-containing protein 93.6 0.00014 3E-09 67.7 -14.2 37 127-163 89-128 (478)
76 smart00370 LRR Leucine-rich re 93.0 0.067 1.4E-06 27.5 1.5 19 351-369 2-20 (26)
77 smart00369 LRR_TYP Leucine-ric 93.0 0.067 1.4E-06 27.5 1.5 19 351-369 2-20 (26)
78 KOG4308 LRR-containing protein 92.9 0.00038 8.1E-09 64.9 -12.4 184 152-335 89-303 (478)
79 KOG3864 Uncharacterized conser 91.0 0.019 4E-07 46.2 -3.1 81 248-331 103-185 (221)
80 PF13516 LRR_6: Leucine Rich r 90.8 0.15 3.3E-06 25.6 1.2 17 350-366 1-17 (24)
81 smart00369 LRR_TYP Leucine-ric 89.6 0.41 8.9E-06 24.5 2.3 21 125-146 2-22 (26)
82 smart00370 LRR Leucine-rich re 89.6 0.41 8.9E-06 24.5 2.3 21 125-146 2-22 (26)
83 smart00364 LRR_BAC Leucine-ric 87.4 0.41 8.8E-06 24.6 1.3 18 351-369 2-19 (26)
84 KOG4242 Predicted myosin-I-bin 82.1 9.1 0.0002 35.5 8.2 280 77-362 165-479 (553)
85 KOG0473 Leucine-rich repeat pr 79.8 0.048 1E-06 45.0 -6.1 84 52-138 41-124 (326)
86 smart00368 LRR_RI Leucine rich 79.2 1.6 3.4E-05 22.9 1.6 15 351-365 2-16 (28)
87 smart00365 LRR_SD22 Leucine-ri 75.3 2.7 5.8E-05 21.6 1.7 15 351-365 2-16 (26)
88 KOG4242 Predicted myosin-I-bin 74.2 27 0.00059 32.5 8.8 112 200-311 356-481 (553)
89 smart00367 LRR_CC Leucine-rich 73.2 2.5 5.5E-05 21.5 1.4 15 350-364 1-16 (26)
90 KOG0473 Leucine-rich repeat pr 67.5 0.046 9.9E-07 45.1 -8.9 88 72-163 37-124 (326)
91 KOG3763 mRNA export factor TAP 60.6 4.7 0.0001 38.0 1.4 82 75-156 216-307 (585)
92 KOG3763 mRNA export factor TAP 44.8 11 0.00024 35.7 1.1 13 244-256 242-254 (585)
93 COG4875 Uncharacterized protei 29.2 56 0.0012 24.1 2.4 34 1-35 28-63 (156)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=5.1e-40 Score=333.72 Aligned_cols=349 Identities=41% Similarity=0.678 Sum_probs=279.1
Q ss_pred ChhHHHHHHHHHHhccCCCCccccCCCCCCCCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCC
Q 035512 8 ITTDRDALLALKAHITHDPTNFFAKNWNTNISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFN 87 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~ 87 (372)
.+.|+.+|++|++.+ .+|..++. +|....++|.|.|+.|.. ..+++.|+++++.+.+..+..|..+++|++|++++|
T Consensus 27 ~~~~~~~l~~~~~~~-~~~~~~~~-~w~~~~~~c~w~gv~c~~-~~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n 103 (968)
T PLN00113 27 HAEELELLLSFKSSI-NDPLKYLS-NWNSSADVCLWQGITCNN-SSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNN 103 (968)
T ss_pred CHHHHHHHHHHHHhC-CCCcccCC-CCCCCCCCCcCcceecCC-CCcEEEEEecCCCccccCChHHhCCCCCCEEECCCC
Confidence 457899999999999 68888887 999888999999999974 568999999999999988999999999999999999
Q ss_pred cCCCCCChhhh-CCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccC
Q 035512 88 RLSGSIPSAIF-TTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAI 166 (372)
Q Consensus 88 ~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 166 (372)
.+.+.+|..+. .+.+|++|++++|.+++..|. ..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+.+..
T Consensus 104 ~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~-~l~~L~~L~L~~n~l~~~~ 180 (968)
T PLN00113 104 QLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG-SFSSLKVLDLGGNVLVGKI 180 (968)
T ss_pred ccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHh-cCCCCCEEECccCcccccC
Confidence 99888887665 899999999999988766554 4578888888888888767776654 7888888888888887777
Q ss_pred CccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCC
Q 035512 167 PSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLR 246 (372)
Q Consensus 167 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 246 (372)
|..+.++++|++|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+....|..+..++
T Consensus 181 p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~ 260 (968)
T PLN00113 181 PNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK 260 (968)
T ss_pred ChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCC
Confidence 88888888888888888888777777788888888888888888777788888888888888888888777777888888
Q ss_pred CCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCE
Q 035512 247 NLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLER 326 (372)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~ 326 (372)
+|++|++++|.+.+..|..+.++++|++|++++|.+.+. ....+.++++|+.|++++|.+.+..|..+..+++|+.
T Consensus 261 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~----~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~ 336 (968)
T PLN00113 261 NLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGE----IPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQV 336 (968)
T ss_pred CCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccC----CChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCE
Confidence 888888888888777777788888888888888876432 2223445666666677777777666767777777777
Q ss_pred EecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 327 LNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 327 L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
|++++|.+.+..+. .+..+++|+.|++++|++++.+|+++
T Consensus 337 L~L~~n~l~~~~p~-----~l~~~~~L~~L~Ls~n~l~~~~p~~~ 376 (968)
T PLN00113 337 LQLWSNKFSGEIPK-----NLGKHNNLTVLDLSTNNLTGEIPEGL 376 (968)
T ss_pred EECcCCCCcCcCCh-----HHhCCCCCcEEECCCCeeEeeCChhH
Confidence 77777777665554 35566666777777666666666544
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=4.7e-34 Score=290.21 Aligned_cols=314 Identities=35% Similarity=0.478 Sum_probs=194.6
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+..|..+..+++|++|+
T Consensus 139 l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~ 218 (968)
T PLN00113 139 IPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY 218 (968)
T ss_pred cCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence 34566666666666656666666666777777766666656666666666677777766666666666666666677777
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+.+.+|..+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 219 L~~n~l~~~~p~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~ 297 (968)
T PLN00113 219 LGYNNLSGEIPYEIG-GLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLS 297 (968)
T ss_pred CcCCccCCcCChhHh-cCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeec
Confidence 766666655555543 5666777777766666666666666667777777666666555666666666777777666666
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCC--
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSI-- 289 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-- 289 (372)
+..|..+..+++|+.|++++|.+....|..+..+++|++|++++|.+.+..|..+..+++|+.|++++|.+.+.....
T Consensus 298 ~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 298 GEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred cCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHh
Confidence 666666666667777777766666556666666667777777777666666666666667777777666654321100
Q ss_pred ------------------CCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCC
Q 035512 290 ------------------PDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFK 351 (372)
Q Consensus 290 ------------------~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~ 351 (372)
....+..+++|+.|++++|.+++..|..+..++.|+.|++++|.+.+..+. .+..++
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~ 452 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINS-----RKWDMP 452 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccCh-----hhccCC
Confidence 001122334444455555555544555555555555555555555544443 234566
Q ss_pred CCcEEeCcCCcccccCCCCC
Q 035512 352 SLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 352 ~L~~L~l~~~~l~~~~p~~~ 371 (372)
+|+.|++++|++.+.+|+.+
T Consensus 453 ~L~~L~L~~n~~~~~~p~~~ 472 (968)
T PLN00113 453 SLQMLSLARNKFFGGLPDSF 472 (968)
T ss_pred CCcEEECcCceeeeecCccc
Confidence 67777777777666666543
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.98 E-value=9e-34 Score=251.38 Aligned_cols=308 Identities=26% Similarity=0.299 Sum_probs=217.9
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.|++.+|.|+....+.++.++.|+.|+|+.|.|...-...|.+-.++++|+|++|.++......|..+.+|..|.++
T Consensus 126 hl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLs 205 (873)
T KOG4194|consen 126 HLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLS 205 (873)
T ss_pred ceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecc
Confidence 45556666666655555555666666666666666653333344445566666666666666555566666666666666
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
.|+++ .+|...|+++++|+.|++..|.+.-.-...|..+++|+.|.+..|.+.......|..+.++++|+++.|.+...
T Consensus 206 rNrit-tLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~v 284 (873)
T KOG4194|consen 206 RNRIT-TLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAV 284 (873)
T ss_pred cCccc-ccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhh
Confidence 66666 66666666677777777766665433234556666666666666666655555667777777777777777655
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcC
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFR 293 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (372)
...++.++..|+.|+++.|.+.++.++..+.+++|+.|+++.|+++...+.+|..+..|++|++++|.+ ..+....
T Consensus 285 n~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi----~~l~e~a 360 (873)
T KOG4194|consen 285 NEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSI----DHLAEGA 360 (873)
T ss_pred hcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccch----HHHHhhH
Confidence 566777777888888888888777777777778888888888888777777777888888888888877 5666667
Q ss_pred cCccccccccccCCCccccCC---CccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCC
Q 035512 294 LPNLEVLLLWDLENNSFSGFI---PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKT 370 (372)
Q Consensus 294 ~~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 370 (372)
|..+++|+.|+++.|.+...+ ..+|.+++.|++|++.+|++...... .|.+++.|++||+.+|.|..+=|..
T Consensus 361 f~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~kr-----Afsgl~~LE~LdL~~NaiaSIq~nA 435 (873)
T KOG4194|consen 361 FVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKR-----AFSGLEALEHLDLGDNAIASIQPNA 435 (873)
T ss_pred HHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchh-----hhccCcccceecCCCCcceeecccc
Confidence 778888888899998876443 33577889999999999988766655 6889999999999999998877776
Q ss_pred C
Q 035512 371 F 371 (372)
Q Consensus 371 ~ 371 (372)
|
T Consensus 436 F 436 (873)
T KOG4194|consen 436 F 436 (873)
T ss_pred c
Confidence 5
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.97 E-value=1.9e-32 Score=243.02 Aligned_cols=306 Identities=25% Similarity=0.268 Sum_probs=230.5
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
...+.|++++|.+...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.++....+.+..++.|+.||+
T Consensus 78 ~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred cceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 45678999999999888888999999999999999988 67776667777888888888777666666666677777777
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeecc------
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLG------ 206 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~------ 206 (372)
+.|.+. .++..-|..-.++++|++++|.|+......|..+.+|..|.++.|.++...+..|..+++|+.|++.
T Consensus 157 SrN~is-~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri 235 (873)
T KOG4194|consen 157 SRNLIS-EIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI 235 (873)
T ss_pred hhchhh-cccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence 776665 5555555444556666666666655544555555555555555555553333444445555555554
Q ss_pred ------------------CCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccC
Q 035512 207 ------------------ANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFN 268 (372)
Q Consensus 207 ------------------~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 268 (372)
.|.+...-..+|..+.++++|+++.|.++....-++.+++.|+.|+++.|.|..+.+++...
T Consensus 236 ve~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsf 315 (873)
T KOG4194|consen 236 VEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSF 315 (873)
T ss_pred ehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhh
Confidence 44444333445667778888888888887777778888899999999999998888888888
Q ss_pred cCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCccccccc
Q 035512 269 VSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLS 348 (372)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~ 348 (372)
+++|+.|++++|.+ ..++...|..+.+|+.|+++.|.++.....+|..+++|++|+|+.|.++..+.. -...|.
T Consensus 316 tqkL~~LdLs~N~i----~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IED--aa~~f~ 389 (873)
T KOG4194|consen 316 TQKLKELDLSSNRI----TRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIED--AAVAFN 389 (873)
T ss_pred cccceeEecccccc----ccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEec--chhhhc
Confidence 99999999999998 678888888999999999999999877777899999999999999998755443 112478
Q ss_pred CCCCCcEEeCcCCccccc
Q 035512 349 NFKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 349 ~~~~L~~L~l~~~~l~~~ 366 (372)
++++|+.|++.||++..+
T Consensus 390 gl~~LrkL~l~gNqlk~I 407 (873)
T KOG4194|consen 390 GLPSLRKLRLTGNQLKSI 407 (873)
T ss_pred cchhhhheeecCceeeec
Confidence 899999999999999864
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.93 E-value=3.1e-28 Score=218.31 Aligned_cols=293 Identities=28% Similarity=0.441 Sum_probs=187.5
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCC-CChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS-IPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++.+|.+.+|.+. .+-..+..++.||.+.++.|.++.. +|..+..+..|..||+++|++. ..|..+...+++-+|++
T Consensus 56 kLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNL 133 (1255)
T KOG0444|consen 56 KLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNL 133 (1255)
T ss_pred hhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEc
Confidence 4555555555554 2223344555555555555554433 4555666666666666666665 55556666666666666
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc------------------------
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG------------------------ 188 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------------------ 188 (372)
++|.+. ++|..+|.++..|-.|++++|++. .+|+.+..+..|++|++++|.+..
T Consensus 134 S~N~Ie-tIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl 211 (1255)
T KOG0444|consen 134 SYNNIE-TIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL 211 (1255)
T ss_pred ccCccc-cCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh
Confidence 666665 666666666666666666666554 444455555555555555554432
Q ss_pred -ccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCcccc
Q 035512 189 -AIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIF 267 (372)
Q Consensus 189 -~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 267 (372)
.+|..+..+.+|..++++.|.+. .+|+.+.++++|+.|++++|.++. .........+|++|+++.|+++ .+|.+++
T Consensus 212 ~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avc 288 (1255)
T KOG0444|consen 212 DNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVC 288 (1255)
T ss_pred hcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHh
Confidence 23444555556666666666655 556666667777777777777654 2223344567777777777776 6777888
Q ss_pred CcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccc
Q 035512 268 NVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSL 347 (372)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l 347 (372)
+++.|+.|.+.+|++.= .-+|+ ++.++..|+++..++|.+. .+|+.+..|..|+.|.|+.|.+.+.+.. +
T Consensus 289 KL~kL~kLy~n~NkL~F--eGiPS-GIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTLPea------I 358 (1255)
T KOG0444|consen 289 KLTKLTKLYANNNKLTF--EGIPS-GIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITLPEA------I 358 (1255)
T ss_pred hhHHHHHHHhccCcccc--cCCcc-chhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccceeechhh------h
Confidence 88888888888887621 11222 4557788888888888876 6788888999999999999988776654 6
Q ss_pred cCCCCCcEEeCcCCcc
Q 035512 348 SNFKSLTHIVLSNNPL 363 (372)
Q Consensus 348 ~~~~~L~~L~l~~~~l 363 (372)
.-++.|+.||+.+|+-
T Consensus 359 HlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 359 HLLPDLKVLDLRENPN 374 (1255)
T ss_pred hhcCCcceeeccCCcC
Confidence 6678899999998873
No 6
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.90 E-value=2.8e-26 Score=205.89 Aligned_cols=304 Identities=25% Similarity=0.407 Sum_probs=220.1
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccC-CCCccccCCCCCCEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSG-ALPSFIFNKSSLQHL 130 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L 130 (372)
..+++.|.+...++. .+|+.++.+.+|++|.+++|.+. .+...+..++.||.+.+.+|.+.. -+|..+..+..|..|
T Consensus 31 Mt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~l 108 (1255)
T KOG0444|consen 31 MTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTIL 108 (1255)
T ss_pred hhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHhhhccccccCCCCchhcccccceee
Confidence 446777777777765 66777777777777777777765 344456667777777777776643 356677778888888
Q ss_pred EccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcc
Q 035512 131 DFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (372)
|+++|++. +.|..+- .-.++-+|++++|.|.......+.++..|-.||+++|.+. .+|.....+..|++|.+++|++
T Consensus 109 DLShNqL~-EvP~~LE-~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL 185 (1255)
T KOG0444|consen 109 DLSHNQLR-EVPTNLE-YAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPL 185 (1255)
T ss_pred ecchhhhh-hcchhhh-hhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChh
Confidence 88888877 7777664 5677778888888877555556677788888888888776 5565667777888888888876
Q ss_pred ccccCccccCCCCCCEEEccCCccc-ccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCC
Q 035512 211 QGEIPREFGNLAVLELMSLAGNNLQ-EKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSI 289 (372)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 289 (372)
.......+..++.|+.|.+++...+ ..+|..+..+.+|..++++.|.+. ..|..+..+++|+.|++++|++.. +
T Consensus 186 ~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite----L 260 (1255)
T KOG0444|consen 186 NHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE----L 260 (1255)
T ss_pred hHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee----e
Confidence 5443344455667777788776543 346777788888999999999887 778888899999999999998832 2
Q ss_pred CCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCC
Q 035512 290 PDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 290 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
. .....-..|+.|+++.|+++ .+|+++..++.|+.|.+.+|++.-.... +.++.+..|+.+...+|.+. .+|+
T Consensus 261 ~-~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiP----SGIGKL~~Levf~aanN~LE-lVPE 333 (1255)
T KOG0444|consen 261 N-MTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIP----SGIGKLIQLEVFHAANNKLE-LVPE 333 (1255)
T ss_pred e-ccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCc----cchhhhhhhHHHHhhccccc-cCch
Confidence 1 12223344555599999988 6788888999999999999987633222 15778888889989988887 4777
Q ss_pred CCC
Q 035512 370 TFF 372 (372)
Q Consensus 370 ~~~ 372 (372)
.+|
T Consensus 334 glc 336 (1255)
T KOG0444|consen 334 GLC 336 (1255)
T ss_pred hhh
Confidence 664
No 7
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.89 E-value=1.2e-25 Score=191.77 Aligned_cols=289 Identities=29% Similarity=0.405 Sum_probs=187.7
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCc
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNT 136 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (372)
.+++.++.++...+. .-.++.|++|+...|.++ .+|..++.+..|.-|++..|++. ..| .|.++..|.++.++.|.
T Consensus 164 ~l~~~~n~l~~l~~~-~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~ 239 (565)
T KOG0472|consen 164 KLDLEGNKLKALPEN-HIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQ 239 (565)
T ss_pred HhhccccchhhCCHH-HHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccH
Confidence 344444544422222 222555555555555554 55556666666666666666665 344 45566666666666666
Q ss_pred cccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc-----
Q 035512 137 LSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ----- 211 (372)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~----- 211 (372)
+. .+|..+++.++++.+|++.+|++. ..|..+..+.+|.+||+++|.++ ..|..++++ .|+.|.+.+|++.
T Consensus 240 i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ 315 (565)
T KOG0472|consen 240 IE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRRE 315 (565)
T ss_pred HH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHH
Confidence 65 666666666677777777777665 34444555666667777776666 455556666 5666666666541
Q ss_pred ------------------------------------------------------------cccCccc--cCCCCCCEEEc
Q 035512 212 ------------------------------------------------------------GEIPREF--GNLAVLELMSL 229 (372)
Q Consensus 212 ------------------------------------------------------------~~~~~~l--~~~~~L~~L~l 229 (372)
....++| +.-.-+..+++
T Consensus 316 ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~Vnf 395 (565)
T KOG0472|consen 316 IISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNF 395 (565)
T ss_pred HHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEec
Confidence 0000111 01112344555
Q ss_pred cCCcccc-----------------------cCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcccccc
Q 035512 230 AGNNLQE-----------------------KIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSL 286 (372)
Q Consensus 230 ~~~~~~~-----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 286 (372)
+.|.+.. ..|..++.+++|..|++++|.+. .+|..++.+..|++|+++.|.+
T Consensus 396 skNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrF---- 470 (565)
T KOG0472|consen 396 SKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRF---- 470 (565)
T ss_pred ccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccc----
Confidence 5554321 34555677889999999999876 6788888999999999999987
Q ss_pred CCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 287 SSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 287 ~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
...|. .+-.+..++.+-.++|++..+.+..+.++.+|.+|++.+|.+...+|. +++|.+|++|++.||++..
T Consensus 471 r~lP~-~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp~------LgnmtnL~hLeL~gNpfr~ 542 (565)
T KOG0472|consen 471 RMLPE-CLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPPI------LGNMTNLRHLELDGNPFRQ 542 (565)
T ss_pred ccchH-HHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCChh------hccccceeEEEecCCccCC
Confidence 44443 222344555557778999877777799999999999999999988886 8999999999999999983
No 8
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=5.8e-21 Score=195.44 Aligned_cols=286 Identities=21% Similarity=0.256 Sum_probs=188.6
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
.+++.|.+.+++++ .+|..| ...+|++|+++++.+. .++..+..+++|++|+++++......| .+..+++|++|++
T Consensus 589 ~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L 664 (1153)
T PLN03210 589 PKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKL 664 (1153)
T ss_pred cccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEe
Confidence 45777777777765 555555 4567777888777776 566666777777788777665443444 3666777777777
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
++|.....+|..+. .+++|+.|++++|.....+|..+ ++++|+.|++++|......+. ...+|+.|+++++.+.
T Consensus 665 ~~c~~L~~lp~si~-~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~---~~~nL~~L~L~~n~i~- 738 (1153)
T PLN03210 665 SDCSSLVELPSSIQ-YLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPD---ISTNISWLDLDETAIE- 738 (1153)
T ss_pred cCCCCccccchhhh-ccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCcccccc---ccCCcCeeecCCCccc-
Confidence 77765556666554 67777777777765444445444 567777777776643323322 1235566666655543
Q ss_pred ccCcc------------------------------ccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccccc
Q 035512 213 EIPRE------------------------------FGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTI 262 (372)
Q Consensus 213 ~~~~~------------------------------l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 262 (372)
.+|.. ...++.|+.|++++|.....+|..+..+++|+.|++++|...+.+
T Consensus 739 ~lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~L 818 (1153)
T PLN03210 739 EFPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETL 818 (1153)
T ss_pred cccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCee
Confidence 12211 112356777888877666667777888888888888887544455
Q ss_pred CccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCc
Q 035512 263 PTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELS 342 (372)
Q Consensus 263 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~ 342 (372)
|..+ .+++|++|++++|.... .++. ...+|+.|++++|.++ .+|..+..+++|+.|++++|......+.
T Consensus 819 P~~~-~L~sL~~L~Ls~c~~L~---~~p~----~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~-- 887 (1153)
T PLN03210 819 PTGI-NLESLESLDLSGCSRLR---TFPD----ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSL-- 887 (1153)
T ss_pred CCCC-CccccCEEECCCCCccc---cccc----cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCc--
Confidence 6554 67888888888875422 2221 1245666699999887 4677888999999999999875544443
Q ss_pred ccccccCCCCCcEEeCcCCc
Q 035512 343 FLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 343 ~~~~l~~~~~L~~L~l~~~~ 362 (372)
.+..+++|+.+++++|.
T Consensus 888 ---~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 888 ---NISKLKHLETVDFSDCG 904 (1153)
T ss_pred ---ccccccCCCeeecCCCc
Confidence 35677888888988886
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.84 E-value=2.3e-24 Score=183.93 Aligned_cols=266 Identities=35% Similarity=0.483 Sum_probs=168.4
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
.+..+.++.|.++ .+.+.+.++..+.+|++.+|+.. ..|.+++++..++.++++++++. ..|..+..+++++.++.+
T Consensus 46 ~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s 122 (565)
T KOG0472|consen 46 DLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCS 122 (565)
T ss_pred chhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcc
Confidence 4666777777775 44445666777777777777766 56666777666667777766665 556666666666666666
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
.|.+. +++..++ .+..+..++..+ |++. ..|..+..+.++..+.+.+|.+...
T Consensus 123 ~n~~~-el~~~i~-~~~~l~dl~~~~------------------------N~i~-slp~~~~~~~~l~~l~~~~n~l~~l 175 (565)
T KOG0472|consen 123 SNELK-ELPDSIG-RLLDLEDLDATN------------------------NQIS-SLPEDMVNLSKLSKLDLEGNKLKAL 175 (565)
T ss_pred cccee-ecCchHH-HHhhhhhhhccc------------------------cccc-cCchHHHHHHHHHHhhccccchhhC
Confidence 66655 4554444 344444444444 4443 3444444555555555555555433
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcC
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFR 293 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (372)
.+..+. +..|++++...|-+. .+|..++.+.+|..|++..|.+. ..| .|.+|..|++++++.|++ ..++...
T Consensus 176 ~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i----~~lpae~ 247 (565)
T KOG0472|consen 176 PENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQI----EMLPAEH 247 (565)
T ss_pred CHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHH----HhhHHHH
Confidence 333333 555666666555543 35556666667777777777665 445 667777777777777776 5566666
Q ss_pred cCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 294 LPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 294 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
...+.++..||++.|+++ ..|+.+..+.+|.+||+|+|.+++.++. ++++ .|+.|-+.|||+.+
T Consensus 248 ~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is~Lp~s------Lgnl-hL~~L~leGNPlrT 311 (565)
T KOG0472|consen 248 LKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDISSLPYS------LGNL-HLKFLALEGNPLRT 311 (565)
T ss_pred hcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccccCCcc------cccc-eeeehhhcCCchHH
Confidence 667777777788888777 4566666677788888888888777764 6666 77778888887754
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.84 E-value=2.6e-19 Score=183.42 Aligned_cols=277 Identities=22% Similarity=0.241 Sum_probs=173.9
Q ss_pred ccccccCCC-CCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhc
Q 035512 69 IPSQLGNLS-SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICS 147 (372)
Q Consensus 69 ~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 147 (372)
+|..|..++ +|+.|.+.++.++ .+|..+ ...+|+.|++.++.+. ..+..+..+++|+.|+++++.....+|. +.
T Consensus 580 lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~--ls 654 (1153)
T PLN03210 580 LPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD--LS 654 (1153)
T ss_pred cCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc--cc
Confidence 344444432 4666666665554 445444 3566777777777665 4555666777777777777654435554 33
Q ss_pred CCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEE
Q 035512 148 NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELM 227 (372)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 227 (372)
.+++|+.|++.+|.....+|..+..+++|+.|++++|.....+|..+ .+++|+.|++++|.....+|.. ..+|+.|
T Consensus 655 ~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L 730 (1153)
T PLN03210 655 MATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWL 730 (1153)
T ss_pred cCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCee
Confidence 57777888877776555666777777778888877765333444433 5677777887777544344332 3467777
Q ss_pred EccCCcccccCcccc------------------------------cCCCCCCEEEccCCccccccCccccCcCCCCEEec
Q 035512 228 SLAGNNLQEKIPPEI------------------------------GNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKL 277 (372)
Q Consensus 228 ~l~~~~~~~~~~~~l------------------------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 277 (372)
+++++.+.. +|..+ ..+++|++|++++|.....+|..+.++++|+.|++
T Consensus 731 ~L~~n~i~~-lP~~~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~L 809 (1153)
T PLN03210 731 DLDETAIEE-FPSNLRLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEI 809 (1153)
T ss_pred ecCCCcccc-ccccccccccccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEEC
Confidence 777776543 22211 11346777777777665567777888888888888
Q ss_pred cCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEe
Q 035512 278 YSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIV 357 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~ 357 (372)
++|.... .+|... ++++|+.|++++|......|.. .++|+.|++++|.+...+. .+..+++|+.|+
T Consensus 810 s~C~~L~---~LP~~~--~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~~iP~------si~~l~~L~~L~ 875 (1153)
T PLN03210 810 ENCINLE---TLPTGI--NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIEEVPW------WIEKFSNLSFLD 875 (1153)
T ss_pred CCCCCcC---eeCCCC--CccccCEEECCCCCcccccccc---ccccCEeECCCCCCccChH------HHhcCCCCCEEE
Confidence 8875322 233221 4566677788887544344432 3578888888888765443 467889999999
Q ss_pred CcCCcccccCCC
Q 035512 358 LSNNPLDGILPK 369 (372)
Q Consensus 358 l~~~~l~~~~p~ 369 (372)
+++|+-...+|.
T Consensus 876 L~~C~~L~~l~~ 887 (1153)
T PLN03210 876 MNGCNNLQRVSL 887 (1153)
T ss_pred CCCCCCcCccCc
Confidence 999864434554
No 11
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2.2e-22 Score=171.48 Aligned_cols=279 Identities=24% Similarity=0.232 Sum_probs=163.3
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccc-ccccCCCCccccCCCCCCEEE
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQ-NQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~ 131 (372)
+..+.|++..|.|+.+.+..|+.+++||.|+|++|.|+.+.|.+|..++.|..|-+.+ |+++......|.++..++.|.
T Consensus 67 ~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 67 PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 3455566666666655555666666666666666666655566666665554444433 555544444555566666666
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc------------ccCcchhCCCC
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG------------AIPREIGNLTK 199 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~------------~~~~~~~~~~~ 199 (372)
+.-|.+. .+....+..++++..|.+.+|.+.......+..+..++.+.+..|.+.. ..+..++....
T Consensus 147 lNan~i~-Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc 225 (498)
T KOG4237|consen 147 LNANHIN-CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARC 225 (498)
T ss_pred cChhhhc-chhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhccccee
Confidence 5555555 4455555556666666666555554444455555555555544433110 00111111111
Q ss_pred CCeeeccCCccccccCccccCC-CCCCEEEccCCcccccCc-ccccCCCCCCEEEccCCccccccCccccCcCCCCEEec
Q 035512 200 LKGLYLGANRLQGEIPREFGNL-AVLELMSLAGNNLQEKIP-PEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKL 277 (372)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 277 (372)
.....+...++...-+..+... ..+..---+.+....+.| ..|..+++|++|++++|+++.+-+.+|.+...+++|.+
T Consensus 226 ~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L 305 (498)
T KOG4237|consen 226 VSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYL 305 (498)
T ss_pred cchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhc
Confidence 1111121111111111111111 111111112222222333 45778899999999999999888889999999999999
Q ss_pred cCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCcccc
Q 035512 278 YSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
..|++ ..+....|.++..|+.|++.+|+|+...|.+|..+.+|.+|++-.|++.-
T Consensus 306 ~~N~l----~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~C 360 (498)
T KOG4237|consen 306 TRNKL----EFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNC 360 (498)
T ss_pred CcchH----HHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccC
Confidence 99988 56677778888888888999999988888889889999999998887643
No 12
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.82 E-value=2e-22 Score=171.73 Aligned_cols=296 Identities=22% Similarity=0.256 Sum_probs=222.1
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccC-
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF- 134 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~- 134 (372)
..++.++-+++ .+|..+. +....++|..|.|+..-+.+|+.+++||.|||++|.++.+.|..|.+++.+..|-+.+
T Consensus 49 ~~VdCr~~GL~-eVP~~LP--~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~ 125 (498)
T KOG4237|consen 49 GIVDCRGKGLT-EVPANLP--PETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGN 125 (498)
T ss_pred ceEEccCCCcc-cCcccCC--CcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcC
Confidence 44666777776 4554332 3678999999999966678899999999999999999999999999999998887766
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc--
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG-- 212 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 212 (372)
|+++ .++...|+++..++-|.+.-|++.......+..++++..|.+.+|.+..+....+..+.+++.+.+..|.+..
T Consensus 126 NkI~-~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdC 204 (498)
T KOG4237|consen 126 NKIT-DLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDC 204 (498)
T ss_pred Cchh-hhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCcccccc
Confidence 8898 9999999999999999999988887778889999999999999998875555578888899999888776321
Q ss_pred ----------ccCccccCCCCCCEEEccCCcccccCccccc-CCCCCCEEEccCCccccccC-ccccCcCCCCEEeccCC
Q 035512 213 ----------EIPREFGNLAVLELMSLAGNNLQEKIPPEIG-NLRNLEELNLGDNKLVGTIP-TAIFNVSKLKALKLYSN 280 (372)
Q Consensus 213 ----------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~ 280 (372)
..+..+++..-..-..+.+..+...-+..|. ....+.+--.+.+....+.| ..|.++++|++|++++|
T Consensus 205 nL~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN 284 (498)
T KOG4237|consen 205 NLPWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNN 284 (498)
T ss_pred ccchhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCC
Confidence 1122222222222222333333222222222 11111111112222222333 45889999999999999
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcC
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSN 360 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 360 (372)
++ ..+....|..+..++.|.+..|++..+-...|.++..|+.|+|++|+++...+. .|....+|.+|++-.
T Consensus 285 ~i----~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~-----aF~~~~~l~~l~l~~ 355 (498)
T KOG4237|consen 285 KI----TRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPG-----AFQTLFSLSTLNLLS 355 (498)
T ss_pred cc----chhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecc-----cccccceeeeeehcc
Confidence 99 667788899999999999999999866667899999999999999999988887 688888999999988
Q ss_pred Cccc
Q 035512 361 NPLD 364 (372)
Q Consensus 361 ~~l~ 364 (372)
|++-
T Consensus 356 Np~~ 359 (498)
T KOG4237|consen 356 NPFN 359 (498)
T ss_pred Cccc
Confidence 8763
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.82 E-value=2.9e-19 Score=171.26 Aligned_cols=262 Identities=28% Similarity=0.332 Sum_probs=181.7
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+-..|+++++.++ .+|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|.++. +|.. .++|+.|+++
T Consensus 202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lts-LP~l---p~sL~~L~Ls 270 (788)
T PRK15387 202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPVL---PPGLLELSIF 270 (788)
T ss_pred CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCc-ccCc---ccccceeecc
Confidence 4556889999887 5666554 47999999999888 4554 35789999999998884 4432 4688899999
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
+|.+. .+|. ...+|+.|++++|.+.. +|. ..++|+.|++++|.+.. ++.. ..+|+.|.+++|.+.+
T Consensus 271 ~N~L~-~Lp~----lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 271 SNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred CCchh-hhhh----chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 98876 5554 23568888888888763 333 24678899999888774 3321 2357788888888763
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcC
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFR 293 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (372)
+|.. ..+|+.|++++|.+.. +|.. .++|+.|++++|.+.. +|.. .++|+.|++++|++. .++..
T Consensus 337 LP~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt----~LP~l- 400 (788)
T PRK15387 337 LPTL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLT----SLPVL- 400 (788)
T ss_pred cccc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCccc----CCCCc-
Confidence 3321 2478888998888875 3332 3567888888888773 4432 357888888888873 33321
Q ss_pred cCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCC
Q 035512 294 LPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 294 ~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
...|+.|++++|.++. +|.. ..+|+.|++++|++...+. .+..+++|+.|++++|++++..|.
T Consensus 401 ---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt~LP~------sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 401 ---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLTRLPE------SLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCcccccCh------HHhhccCCCeEECCCCCCCchHHH
Confidence 2345666888888874 4432 3467788888888875443 366778888888888888775443
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.80 E-value=1.3e-21 Score=182.96 Aligned_cols=273 Identities=32% Similarity=0.422 Sum_probs=165.7
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
++..|+++++.+. .+|..+..+.+|+.|+++.|.+. ..|..+.++.+|++|.|.+|.+. ..|..+..+++|+.|+++
T Consensus 46 ~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS 122 (1081)
T KOG0618|consen 46 KLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLS 122 (1081)
T ss_pred eeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccc
Confidence 3777777777764 66666667777777777777666 55555666666666666666554 455556666666666666
Q ss_pred CCccccccChhhhc---------------------------------------CCCCccE-EEccCCccC----------
Q 035512 134 FNTLSGEIPANICS---------------------------------------NLPFLEI-LSLQENMFH---------- 163 (372)
Q Consensus 134 ~~~~~~~~~~~~~~---------------------------------------~l~~L~~-L~l~~~~~~---------- 163 (372)
+|.+. .+|..+.. ....++. |++++|.+.
T Consensus 123 ~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~dls~~~~l 201 (1081)
T KOG0618|consen 123 FNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVLDLSNLANL 201 (1081)
T ss_pred hhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhhhhhhccch
Confidence 65443 22211100 0011111 333333221
Q ss_pred -----------cc--CCc----------------cCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc--
Q 035512 164 -----------GA--IPS----------------NLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG-- 212 (372)
Q Consensus 164 -----------~~--~~~----------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-- 212 (372)
.. ... .-..-.+|++++++.+.+. ..|+++..+.+++.+....|.+..
T Consensus 202 ~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~lp 280 (1081)
T KOG0618|consen 202 EVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVALP 280 (1081)
T ss_pred hhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHhhH
Confidence 00 000 0001145677777777776 455777888888888777766531
Q ss_pred --------------------ccCccccCCCCCCEEEccCCcccccCcccc-------------------------cCCCC
Q 035512 213 --------------------EIPREFGNLAVLELMSLAGNNLQEKIPPEI-------------------------GNLRN 247 (372)
Q Consensus 213 --------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-------------------------~~~~~ 247 (372)
.+|....+...|++|++..|.+....+..+ ...+.
T Consensus 281 ~ri~~~~~L~~l~~~~nel~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~ 360 (1081)
T KOG0618|consen 281 LRISRITSLVSLSAAYNELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAA 360 (1081)
T ss_pred HHHhhhhhHHHHHhhhhhhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHH
Confidence 234444567778888888776653211111 01234
Q ss_pred CCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEE
Q 035512 248 LEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERL 327 (372)
Q Consensus 248 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L 327 (372)
|+.|.+.+|.+++.....+.+.++|+.|++++|.+ ..++...+.+++.|+.|++++|+++ .+|+.+..+.+|++|
T Consensus 361 Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL----~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL 435 (1081)
T KOG0618|consen 361 LQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL----NSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTL 435 (1081)
T ss_pred HHHHHHhcCcccccchhhhccccceeeeeeccccc----ccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHH
Confidence 67777788888777667788889999999999988 6788888888999999999999887 345555555555555
Q ss_pred ecCCCcccc
Q 035512 328 NLGDNYLTS 336 (372)
Q Consensus 328 ~l~~n~~~~ 336 (372)
...+|.+..
T Consensus 436 ~ahsN~l~~ 444 (1081)
T KOG0618|consen 436 RAHSNQLLS 444 (1081)
T ss_pred hhcCCceee
Confidence 555555443
No 15
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.78 E-value=2.6e-21 Score=180.99 Aligned_cols=290 Identities=31% Similarity=0.350 Sum_probs=175.1
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.|..++|.++...+. ....+|++++++++.+. .+|+-+..+.+|+.++..+|.++ ..|..+....+|+.|.+
T Consensus 219 ~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~ 294 (1081)
T KOG0618|consen 219 PSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSA 294 (1081)
T ss_pred cchheeeeccCcceeeccc--cccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHh
Confidence 4455555555555422221 12235666666666655 44555566666666666666554 44555555556666666
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCC-CcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTY-LRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
..|.+. .+|...- .+..|++|++..|.+....+..+..... ++.|..+.+.+.......-..++.|+.|.+.+|.++
T Consensus 295 ~~nel~-yip~~le-~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Lt 372 (1081)
T KOG0618|consen 295 AYNELE-YIPPFLE-GLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLT 372 (1081)
T ss_pred hhhhhh-hCCCccc-ccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCccc
Confidence 666554 4444332 4556666666666555333322222222 344444444433221111123445777788888877
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+..-..+.+..+|+.|++++|.+.......+.+++.|++|+++||.++ .+|..+..++.|++|...+|.+ ..+|
T Consensus 373 d~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l----~~fP- 446 (1081)
T KOG0618|consen 373 DSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQL----LSFP- 446 (1081)
T ss_pred ccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCce----eech-
Confidence 655556777888888888888887666667778888888888888887 5567788888888888888887 4455
Q ss_pred cCcCccccccccccCCCccccCC-CccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCC
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFI-PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNN 361 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 361 (372)
.+..+++|+.+|++.|+++... +.... -++|++|++++|........ .+..++++...++.-+
T Consensus 447 -e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyLdlSGN~~l~~d~~-----~l~~l~~l~~~~i~~~ 510 (1081)
T KOG0618|consen 447 -ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYLDLSGNTRLVFDHK-----TLKVLKSLSQMDITLN 510 (1081)
T ss_pred -hhhhcCcceEEecccchhhhhhhhhhCC-CcccceeeccCCcccccchh-----hhHHhhhhhheecccC
Confidence 4557778888888888877543 33332 27888888888875333333 3555666666666555
No 16
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.75 E-value=2.1e-17 Score=159.39 Aligned_cols=248 Identities=23% Similarity=0.411 Sum_probs=186.1
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
..+...|+++++.++ .+|..+. ++|+.|++++|+++ .+|..+. .+|++|++++|.++ .+|..+. ++|+.|+
T Consensus 177 ~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~ 247 (754)
T PRK15370 177 KNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEME 247 (754)
T ss_pred ccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEE
Confidence 345788999999988 5565443 58999999999998 6676554 58999999999988 4455443 4799999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+. .+|..+. .+|+.|++++|.+.. +|..+. ++|+.|++++|.++. ++..+. ++|+.|++++|.+.
T Consensus 248 Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt 317 (754)
T PRK15370 248 LSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLT 317 (754)
T ss_pred CcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccc
Confidence 9999998 7887664 479999999998874 455443 589999999998874 343332 46899999999887
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
. +|..+ .++|+.|++++|.++. +|..+. ++|+.|++++|.+. .+|..+ .++|++|++++|.+ ..++.
T Consensus 318 ~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~L----t~LP~ 384 (754)
T PRK15370 318 A-LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNAL----TNLPE 384 (754)
T ss_pred c-CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcC----CCCCH
Confidence 4 34333 3689999999998875 454443 68999999999987 455544 36899999999988 44444
Q ss_pred cCcCccccccccccCCCccccCCCcc----ccCCCCCCEEecCCCccc
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNT----LGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~~~ 335 (372)
... ..|+.|++++|++.. +|.. ...++.+..|++.+|++.
T Consensus 385 ~l~---~sL~~LdLs~N~L~~-LP~sl~~~~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 385 NLP---AALQIMQASRNNLVR-LPESLPHFRGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hHH---HHHHHHhhccCCccc-CchhHHHHhhcCCCccEEEeeCCCcc
Confidence 322 246667999999874 4443 344588899999999875
No 17
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=6.5e-20 Score=163.79 Aligned_cols=283 Identities=24% Similarity=0.288 Sum_probs=135.9
Q ss_pred EEeCCCCcc-ccccccccCCCCCCEEECCCCcCCCC----CChhhhCCCCCCEEEcccccccC------CCCccccCCCC
Q 035512 58 LNISGLNLT-GTIPSQLGNLSSLQSLNLSFNRLSGS----IPSAIFTTYTLKYVNLRQNQLSG------ALPSFIFNKSS 126 (372)
Q Consensus 58 l~l~~~~l~-~~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~~l~~ 126 (372)
|++.++.++ ......+..+++|++|+++++.+++. ++..+...+.+++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 444555554 22334445555666666666665432 22333445556666666554431 11122334445
Q ss_pred CCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccc----cCcchhCC-CCCC
Q 035512 127 LQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGA----IPREIGNL-TKLK 201 (372)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~-~~L~ 201 (372)
|++|++++|.+.+..+..+. .+.. . +.|++|++++|.+... ....+..+ ++|+
T Consensus 83 L~~L~l~~~~~~~~~~~~~~-~l~~--------------------~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~ 140 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLE-SLLR--------------------S-SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140 (319)
T ss_pred eeEEEccCCCCChhHHHHHH-HHhc--------------------c-CcccEEEeeCCccchHHHHHHHHHHHhCCCCce
Confidence 55555555544321111111 1111 1 2244444444433311 11122333 4555
Q ss_pred eeeccCCcccc----ccCccccCCCCCCEEEccCCccccc----CcccccCCCCCCEEEccCCccccc----cCccccCc
Q 035512 202 GLYLGANRLQG----EIPREFGNLAVLELMSLAGNNLQEK----IPPEIGNLRNLEELNLGDNKLVGT----IPTAIFNV 269 (372)
Q Consensus 202 ~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~ 269 (372)
.|++++|.+.+ .+...+..++.|++|++++|.+... .+..+..+++|++|++++|.+.+. ....+..+
T Consensus 141 ~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~ 220 (319)
T cd00116 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL 220 (319)
T ss_pred EEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc
Confidence 55555555441 1222334445566666666655421 122333445666677766665422 22344556
Q ss_pred CCCCEEeccCCcccccc-CCCCCcCcCccccccccccCCCccccC----CCccccCCCCCCEEecCCCccccCCCCCccc
Q 035512 270 SKLKALKLYSNSLLGSL-SSIPDFRLPNLEVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGDNYLTSSTPELSFL 344 (372)
Q Consensus 270 ~~L~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 344 (372)
++|+.|++++|.+.+.. ..+..........|+.|++++|.+++. +...+..+++|+.+++++|.+...... ...
T Consensus 221 ~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~-~~~ 299 (319)
T cd00116 221 KSLEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQ-LLA 299 (319)
T ss_pred CCCCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHH-HHH
Confidence 67777777777663211 000000001234556667777777521 233455567888888888888755432 111
Q ss_pred ccccCC-CCCcEEeCcCCcc
Q 035512 345 SSLSNF-KSLTHIVLSNNPL 363 (372)
Q Consensus 345 ~~l~~~-~~L~~L~l~~~~l 363 (372)
..+... +.|++|++.++++
T Consensus 300 ~~~~~~~~~~~~~~~~~~~~ 319 (319)
T cd00116 300 ESLLEPGNELESLWVKDDSF 319 (319)
T ss_pred HHHhhcCCchhhcccCCCCC
Confidence 123444 6788888888764
No 18
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.74 E-value=1.1e-19 Score=162.36 Aligned_cols=265 Identities=23% Similarity=0.270 Sum_probs=163.6
Q ss_pred EEECCCCcCCCC-CChhhhCCCCCCEEEcccccccCC----CCccccCCCCCCEEEccCCccccccChhhhcCCCCccEE
Q 035512 81 SLNLSFNRLSGS-IPSAIFTTYTLKYVNLRQNQLSGA----LPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEIL 155 (372)
Q Consensus 81 ~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 155 (372)
.|+|.++.+++. ....+..+.+|+.|+++++.++.. .+..+...+++++++++++.+.+ .+..+
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~-~~~~~---------- 70 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGR-IPRGL---------- 70 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCC-cchHH----------
Confidence 355555555522 333444555666666666655321 22233344555555555544331 01000
Q ss_pred EccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCC---CCCCeeeccCCcccc----ccCccccCC-CCCCEE
Q 035512 156 SLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNL---TKLKGLYLGANRLQG----EIPREFGNL-AVLELM 227 (372)
Q Consensus 156 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~----~~~~~l~~~-~~L~~L 227 (372)
...+..+..+++|++|+++++.+....+..+..+ ++|+.|++++|.+.+ .+...+..+ ++|+.|
T Consensus 71 --------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L 142 (319)
T cd00116 71 --------QSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKL 142 (319)
T ss_pred --------HHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEE
Confidence 0122234456677777777766653333334333 459999999998763 223345566 899999
Q ss_pred EccCCcccc----cCcccccCCCCCCEEEccCCccccc----cCccccCcCCCCEEeccCCccccccCCCCCcCcCcccc
Q 035512 228 SLAGNNLQE----KIPPEIGNLRNLEELNLGDNKLVGT----IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEV 299 (372)
Q Consensus 228 ~l~~~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 299 (372)
++++|.+.. .....+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+.....-...++.+++
T Consensus 143 ~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~ 222 (319)
T cd00116 143 VLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKS 222 (319)
T ss_pred EcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCC
Confidence 999999873 2344566778999999999988732 23345566899999999998743221111123456778
Q ss_pred ccccccCCCccccCCCcccc-----CCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 300 LLLWDLENNSFSGFIPNTLG-----NLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 300 L~~l~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
|+.|++++|.+++.....+. ..+.|++|++++|.++..... .....+..+++|+++++++|.++.
T Consensus 223 L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~-~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 223 LEVLNLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAK-DLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred CCEEecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHH-HHHHHHhcCCCccEEECCCCCCcH
Confidence 88889999998753222221 247999999999988632211 111235666899999999999875
No 19
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.74 E-value=5.2e-17 Score=155.94 Aligned_cols=242 Identities=29% Similarity=0.352 Sum_probs=184.5
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.|.+.+|+++ .+|. .+++|++|++++|.++ .+|. ..++|+.|++++|.++ .++.. ..+|+.|++
T Consensus 222 ~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~Lt-sLP~---lp~sL~~L~Ls~N~L~-~Lp~l---p~~L~~L~L 289 (788)
T PRK15387 222 AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT-HLPAL---PSGLCKLWI 289 (788)
T ss_pred cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccC-cccC---cccccceeeccCCchh-hhhhc---hhhcCEEEC
Confidence 47899999999998 4554 3589999999999998 4553 2468999999999887 33432 357889999
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
++|.+. .+|. ..++|+.|++++|.+.+. +.. ...|+.|++++|.+.. +|. ...+|+.|++++|.+.+
T Consensus 290 s~N~Lt-~LP~----~p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~---lp~~Lq~LdLS~N~Ls~ 356 (788)
T PRK15387 290 FGNQLT-SLPV----LPPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT---LPSGLQELSVSDNQLAS 356 (788)
T ss_pred cCCccc-cccc----cccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc---cccccceEecCCCccCC
Confidence 999988 6665 357899999999998753 332 2467888999998874 332 12479999999999874
Q ss_pred ccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCc
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDF 292 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 292 (372)
+|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|.+ ..++..
T Consensus 357 -LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~L----ssIP~l 420 (788)
T PRK15387 357 -LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRL----TSLPML 420 (788)
T ss_pred -CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcC----CCCCcc
Confidence 4432 3578889999998875 4432 3579999999999884 4432 36899999999998 444431
Q ss_pred CcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCC
Q 035512 293 RLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 293 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 340 (372)
...|+.|++++|+++ .+|..+..+++|+.|+|++|++++..+.
T Consensus 421 ----~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~ 463 (788)
T PRK15387 421 ----PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 463 (788)
T ss_pred ----hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHH
Confidence 235666799999998 5788889999999999999999876544
No 20
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.72 E-value=2.8e-17 Score=158.61 Aligned_cols=321 Identities=19% Similarity=0.298 Sum_probs=218.1
Q ss_pred CCCChhHHHHHHHHHHhccCCCCcc-ccCCCCCCCCCCcccc----------------eeecCCCCcEEEEEeCCCCccc
Q 035512 5 TSTITTDRDALLALKAHITHDPTNF-FAKNWNTNISFCNWTG----------------VACDVHRHRVTVLNISGLNLTG 67 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~----------------~~~~~~~~~l~~l~l~~~~l~~ 67 (372)
+....++...++.....+.-.+... ++-.|....++|...+ +.| ..+.++++.+.+.....
T Consensus 58 ~~~~~~~~~~~~~~~~~l~~p~~~~~~~~~~~~~~~fc~~~~~~~~~l~~~~~~~~~tv~~--~~~~vt~l~~~g~~~~~ 135 (754)
T PRK15370 58 ETASPEEIKSKFECLRMLAFPAYADNIQYSRGGADQYCILSENSQEILSIVFNTEGYTVEG--GGKSVTYTRVTESEQAS 135 (754)
T ss_pred CCCCHHHHHHHHHHHHHhcCCchhhccccccCCCCcccccCCcchhhheeeecCCceEEec--CCCcccccccccccccc
Confidence 3455677778877777763322222 2224888888887766 223 35566666665532211
Q ss_pred cc--c--------------------------ccc-----cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccccc
Q 035512 68 TI--P--------------------------SQL-----GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLS 114 (372)
Q Consensus 68 ~~--~--------------------------~~~-----~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 114 (372)
.. + ..+ +-..+...|+++++.++ .+|..+. ++|+.|++++|.++
T Consensus 136 ~~~~~~~~~~~~~~w~~w~~~~~~~~~~~r~~a~~r~~~Cl~~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt 212 (754)
T PRK15370 136 SASGSKDAVNYELIWSEWVKEAPAKEAANREEAVQRMRDCLKNNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK 212 (754)
T ss_pred cCCCCCChhhHHHHHHHHHhcCCCCccccHHHHHHHHHhhcccCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC
Confidence 00 0 000 01145788999998887 5665443 47999999999988
Q ss_pred CCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcch
Q 035512 115 GALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREI 194 (372)
Q Consensus 115 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 194 (372)
.+|..+. ++|++|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+. .+|+.|++++|.+. .+|..+
T Consensus 213 -sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l 281 (754)
T PRK15370 213 -SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENL 281 (754)
T ss_pred -cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-cccccc
Confidence 4555443 58999999999988 7777553 47999999999887 4454443 57999999999887 345444
Q ss_pred hCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCE
Q 035512 195 GNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKA 274 (372)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~ 274 (372)
. ++|+.|++++|.+.. +|..+. ..|+.|++++|.+.. +|..+ .++|+.|++++|.++. +|..+ .++|+.
T Consensus 282 ~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~ 350 (754)
T PRK15370 282 P--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA-LPETL--PPGLKTLEAGENALTS-LPASL--PPELQV 350 (754)
T ss_pred C--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-CCccc--cccceeccccCCcccc-CChhh--cCcccE
Confidence 2 579999999998874 343332 468889999998875 34333 2689999999999874 55544 379999
Q ss_pred EeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCc
Q 035512 275 LKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLT 354 (372)
Q Consensus 275 L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~ 354 (372)
|++++|.+ ..++.... ..|+.|++++|+++. +|..+. ..|+.|++++|.+...+..+.. .+...+.+.
T Consensus 351 L~Ls~N~L----~~LP~~lp---~~L~~LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~~LP~sl~~--~~~~~~~l~ 418 (754)
T PRK15370 351 LDVSKNQI----TVLPETLP---PTITTLDVSRNALTN-LPENLP--AALQIMQASRNNLVRLPESLPH--FRGEGPQPT 418 (754)
T ss_pred EECCCCCC----CcCChhhc---CCcCEEECCCCcCCC-CCHhHH--HHHHHHhhccCCcccCchhHHH--HhhcCCCcc
Confidence 99999988 34443222 356666999999984 454443 3689999999998765433211 234558899
Q ss_pred EEeCcCCccc
Q 035512 355 HIVLSNNPLD 364 (372)
Q Consensus 355 ~L~l~~~~l~ 364 (372)
.|++.+|+++
T Consensus 419 ~L~L~~Npls 428 (754)
T PRK15370 419 RIIVEYNPFS 428 (754)
T ss_pred EEEeeCCCcc
Confidence 9999999985
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.57 E-value=4.3e-17 Score=124.12 Aligned_cols=154 Identities=35% Similarity=0.561 Sum_probs=114.4
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
...++.|.+++|+++ .+|..++.+.+|++|++.+|.+. ++|..++.++.|+.|+++-|++. ..|..|+.+|.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 446777888888887 66666888888888888888887 77888888888888888888776 7788888888888888
Q ss_pred ccCCcccc-ccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcc
Q 035512 132 FTFNTLSG-EIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 132 l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (372)
+.+|.+.. .+|..+| .+..|+.|.+++|.+. .+|..++++++|+.|.+..|.+. .+|..++.+..|+.|.+.+|.+
T Consensus 109 ltynnl~e~~lpgnff-~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFF-YMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred ccccccccccCCcchh-HHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 88887754 5566666 5777777777777664 56666777777777777766655 4555566666667777776666
Q ss_pred c
Q 035512 211 Q 211 (372)
Q Consensus 211 ~ 211 (372)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 5
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.50 E-value=3e-16 Score=119.58 Aligned_cols=156 Identities=34% Similarity=0.600 Sum_probs=86.3
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
-.+.+++.|.+++|+++ .+|..+.++.+|+.|++.+|.++ ..|..+.++++|+.|+++-|++. .
T Consensus 30 f~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~------------- 93 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-I------------- 93 (264)
T ss_pred cchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-c-------------
Confidence 34556666777777766 55666666666666666666665 45555555555555555555544 3
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCcc-ccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCC
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG-AIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 232 (372)
+|..++.++.|+.||+++|.+.. .+|..|..+..|+.|.+++|.+. .+|..++.+.+|+.|.+..|
T Consensus 94 ------------lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdn 160 (264)
T KOG0617|consen 94 ------------LPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDN 160 (264)
T ss_pred ------------CccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccC
Confidence 34444444555555554444332 23444455555555555555554 44444555555555555555
Q ss_pred cccccCcccccCCCCCCEEEccCCccc
Q 035512 233 NLQEKIPPEIGNLRNLEELNLGDNKLV 259 (372)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~~~~~ 259 (372)
.+.. .|..++.++.|++|.+.+|+++
T Consensus 161 dll~-lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 161 DLLS-LPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred chhh-CcHHHHHHHHHHHHhcccceee
Confidence 5432 4455555555666666666555
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.48 E-value=6.6e-13 Score=127.77 Aligned_cols=151 Identities=29% Similarity=0.505 Sum_probs=126.5
Q ss_pred CCChhHHHHHHHHHHhccCCCCccccCCCCCCCCCC-----cccceeecCCC----CcEEEEEeCCCCccccccccccCC
Q 035512 6 STITTDRDALLALKAHITHDPTNFFAKNWNTNISFC-----NWTGVACDVHR----HRVTVLNISGLNLTGTIPSQLGNL 76 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~----~~l~~l~l~~~~l~~~~~~~~~~l 76 (372)
....+|..+|+.+|..+ .+|.. . +|.. +.| .|.|+.|.... ..++.|+++++.+.+.+|..+..+
T Consensus 368 ~t~~~~~~aL~~~k~~~-~~~~~--~-~W~g--~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip~~i~~L 441 (623)
T PLN03150 368 KTLLEEVSALQTLKSSL-GLPLR--F-GWNG--DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKL 441 (623)
T ss_pred ccCchHHHHHHHHHHhc-CCccc--C-CCCC--CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCCHHHhCC
Confidence 44567899999999998 34432 3 6864 344 79999995311 258999999999999999999999
Q ss_pred CCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEE
Q 035512 77 SSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILS 156 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 156 (372)
++|+.|+|++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.....++..++
T Consensus 442 ~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~ 521 (623)
T PLN03150 442 RHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFN 521 (623)
T ss_pred CCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999988764445667777
Q ss_pred ccCCcc
Q 035512 157 LQENMF 162 (372)
Q Consensus 157 l~~~~~ 162 (372)
+.+|..
T Consensus 522 ~~~N~~ 527 (623)
T PLN03150 522 FTDNAG 527 (623)
T ss_pred ecCCcc
Confidence 776643
No 24
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.21 E-value=2.2e-12 Score=109.42 Aligned_cols=86 Identities=23% Similarity=0.239 Sum_probs=46.5
Q ss_pred CCcEEEEEeCCCCccc----cccccccCCCCCCEEECCCCc---CCCCCCh-------hhhCCCCCCEEEcccccccCCC
Q 035512 52 RHRVTVLNISGLNLTG----TIPSQLGNLSSLQSLNLSFNR---LSGSIPS-------AIFTTYTLKYVNLRQNQLSGAL 117 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~---~~~~~~~-------~~~~l~~L~~L~l~~~~~~~~~ 117 (372)
...++.+++++|.+.. .+...+...++|++.+++.-. ...++|+ ++..+++|++++||.|.+....
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g 108 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG 108 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence 4467777777777742 233445566677777776532 2223333 2334556666666666554333
Q ss_pred Ccc----ccCCCCCCEEEccCCcc
Q 035512 118 PSF----IFNKSSLQHLDFTFNTL 137 (372)
Q Consensus 118 ~~~----l~~l~~L~~L~l~~~~~ 137 (372)
+.. +.++..|++|.+.+|.+
T Consensus 109 ~~~l~~ll~s~~~L~eL~L~N~Gl 132 (382)
T KOG1909|consen 109 IRGLEELLSSCTDLEELYLNNCGL 132 (382)
T ss_pred hHHHHHHHHhccCHHHHhhhcCCC
Confidence 222 23455566666665544
No 25
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.19 E-value=9.2e-13 Score=111.65 Aligned_cols=253 Identities=24% Similarity=0.279 Sum_probs=124.7
Q ss_pred ccccCCCCCCEEECCCCcCCCC----CChhhhCCCCCCEEEcccccccC----C-------CCccccCCCCCCEEEccCC
Q 035512 71 SQLGNLSSLQSLNLSFNRLSGS----IPSAIFTTYTLKYVNLRQNQLSG----A-------LPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 71 ~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~-------~~~~l~~l~~L~~L~l~~~ 135 (372)
+....+..+++++|++|.+..+ +...+.+.++|+.-+++.- +++ . +...+.++++|++++||+|
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDN 102 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDN 102 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeecccc
Confidence 3355667889999999988754 3344556677888777643 222 1 2233445678888888888
Q ss_pred ccccccChh---hhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 136 TLSGEIPAN---ICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 136 ~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
.+....+.. +..++..|++|.+.+|.+.-.....++. .|.+|. .......-+.|+.+...+|.+..
T Consensus 103 A~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen 171 (382)
T KOG1909|consen 103 AFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLEN 171 (382)
T ss_pred ccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeecccccc
Confidence 775444432 3345677777777777654211111100 000000 00001122344555554444332
Q ss_pred ----ccCccccCCCCCCEEEccCCccccc----CcccccCCCCCCEEEccCCccccc----cCccccCcCCCCEEeccCC
Q 035512 213 ----EIPREFGNLAVLELMSLAGNNLQEK----IPPEIGNLRNLEELNLGDNKLVGT----IPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 213 ----~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~ 280 (372)
.....+...+.|+.+.+..|.+... ....+.++++|+.|++.+|-++.. +..++..+++|+.|++++|
T Consensus 172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc 251 (382)
T KOG1909|consen 172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC 251 (382)
T ss_pred ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence 1122334445555555555544321 123345566666666666655321 2344445556666666666
Q ss_pred ccccccCCCCCcCc-CccccccccccCCCccccC----CCccccCCCCCCEEecCCCccc
Q 035512 281 SLLGSLSSIPDFRL-PNLEVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 281 ~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 335 (372)
-+.......-...+ ...+.|+.+.+.+|.++.. +..++...+.|..|+|++|.+.
T Consensus 252 ll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l~ 311 (382)
T KOG1909|consen 252 LLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRLG 311 (382)
T ss_pred ccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCccccc
Confidence 55322211000000 1233444446666666421 2223344566666777766663
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=2.8e-12 Score=111.81 Aligned_cols=207 Identities=21% Similarity=0.193 Sum_probs=83.6
Q ss_pred CCCCCEEECCCCcCCCCCC-hhhhCCCCCCEEEcccccccCC--CCccccCCCCCCEEEccCCccccccChhhhcCCCCc
Q 035512 76 LSSLQSLNLSFNRLSGSIP-SAIFTTYTLKYVNLRQNQLSGA--LPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFL 152 (372)
Q Consensus 76 l~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (372)
++.|+++.+.++.+..... .....|++++.|++++|-+... +......+|+|+.|+++.|++........-..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 3445555555544431110 2333455555555555433321 111223345555555555544321111111234445
Q ss_pred cEEEccCCccCcc-CCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccccc-CccccCCCCCCEEEcc
Q 035512 153 EILSLQENMFHGA-IPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEI-PREFGNLAVLELMSLA 230 (372)
Q Consensus 153 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~ 230 (372)
+.|.++.|.++.. ....+..+|+|..|++..|............+..|+.|++++|.+.+.. ....+.++.|+.|+++
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls 279 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLS 279 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhcc
Confidence 5555555544321 1112233455555555444211111112233344555555555433211 1223444555555555
Q ss_pred CCcccccC-ccc-----ccCCCCCCEEEccCCccccc-cCccccCcCCCCEEeccCCcc
Q 035512 231 GNNLQEKI-PPE-----IGNLRNLEELNLGDNKLVGT-IPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 231 ~~~~~~~~-~~~-----l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 282 (372)
.|.+.+.- |+. ...+++|++|++..|++.+. ....+..+++|+.|.+..+.+
T Consensus 280 ~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~l 338 (505)
T KOG3207|consen 280 STGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYL 338 (505)
T ss_pred ccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccc
Confidence 55544321 111 13345556666665555321 112233445555555554444
No 27
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.11 E-value=6e-11 Score=116.98 Aligned_cols=226 Identities=22% Similarity=0.257 Sum_probs=118.3
Q ss_pred CcEEEEEeCCCC--ccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEE
Q 035512 53 HRVTVLNISGLN--LTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHL 130 (372)
Q Consensus 53 ~~l~~l~l~~~~--l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (372)
+++++|-+.++. +.....+.|..++.|++|++++|.-.+.+|+.++++-+||+|+++++.+. ..|..+.++..|.+|
T Consensus 545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~L 623 (889)
T KOG4658|consen 545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYL 623 (889)
T ss_pred CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhhee
Confidence 356666666664 44344444667777777777776555567777777777777777777766 667777777777777
Q ss_pred EccCCccccccChhhhcCCCCccEEEccCCcc--CccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCC----eee
Q 035512 131 DFTFNTLSGEIPANICSNLPFLEILSLQENMF--HGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLK----GLY 204 (372)
Q Consensus 131 ~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----~L~ 204 (372)
++..+.....+ ......+.+|++|.+..... +......+.++..|+.+.+..... .....+..++.|. .+.
T Consensus 624 nl~~~~~l~~~-~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~~~~~~l~ 700 (889)
T KOG4658|consen 624 NLEVTGRLESI-PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLRSLLQSLS 700 (889)
T ss_pred ccccccccccc-cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHHHHhHhhh
Confidence 77766554333 33333577777777754331 111222233444444444432221 0011112222222 222
Q ss_pred ccCCccccccCccccCCCCCCEEEccCCcccccCcccccC------CCCCCEEEccCCccccccCccccCcCCCCEEecc
Q 035512 205 LGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGN------LRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLY 278 (372)
Q Consensus 205 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 278 (372)
+.++... .....+..+.+|+.|.+..|.+.+........ ++++..+...++.-. -.+.+....|+|++|.+.
T Consensus 701 ~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~-r~l~~~~f~~~L~~l~l~ 778 (889)
T KOG4658|consen 701 IEGCSKR-TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHML-RDLTWLLFAPHLTSLSLV 778 (889)
T ss_pred hcccccc-eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccc-cccchhhccCcccEEEEe
Confidence 2222211 23334566777888888877765432222111 222333333333221 122333456788888888
Q ss_pred CCcccc
Q 035512 279 SNSLLG 284 (372)
Q Consensus 279 ~~~~~~ 284 (372)
+|....
T Consensus 779 ~~~~~e 784 (889)
T KOG4658|consen 779 SCRLLE 784 (889)
T ss_pred cccccc
Confidence 887643
No 28
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=1.5e-11 Score=107.29 Aligned_cols=209 Identities=23% Similarity=0.219 Sum_probs=89.8
Q ss_pred CCCccEEEccCCccCccCC-ccCcCCCCCcEEEeecccCccc--cCcchhCCCCCCeeeccCCccccccCcc-ccCCCCC
Q 035512 149 LPFLEILSLQENMFHGAIP-SNLSNCTYLRILSLAYNDFSGA--IPREIGNLTKLKGLYLGANRLQGEIPRE-FGNLAVL 224 (372)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L 224 (372)
+.+|+.+.+.++....... +....++.++.||++.|-+... ......++|+|+.|+++.|.+....... -..+++|
T Consensus 120 ~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~l 199 (505)
T KOG3207|consen 120 LKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHL 199 (505)
T ss_pred HHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhh
Confidence 4444444444444321110 2334455555555555544432 1233455566666666655543211111 1134455
Q ss_pred CEEEccCCcccccC-cccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccccccc
Q 035512 225 ELMSLAGNNLQEKI-PPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLW 303 (372)
Q Consensus 225 ~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l 303 (372)
+.|.+++|.+.... ...+..+|+|+.|++..|.....-.....-+..|++|+|++|.+.+.. ... ....++.|+.|
T Consensus 200 K~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~-~~~--~~~~l~~L~~L 276 (505)
T KOG3207|consen 200 KQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFD-QGY--KVGTLPGLNQL 276 (505)
T ss_pred heEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccc-ccc--ccccccchhhh
Confidence 56666666554321 122334556666666555321111122233445566666665552211 000 11123333333
Q ss_pred ccCCCccccC-CCcc-----ccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCccc
Q 035512 304 DLENNSFSGF-IPNT-----LGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLD 364 (372)
Q Consensus 304 ~l~~~~~~~~-~~~~-----~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 364 (372)
+++.+.+.+. .|+. ...++.|+.|++..|++..... ++.+.-+++|+.|.+..|.+.
T Consensus 277 nls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~s----l~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 277 NLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRS----LNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred hccccCcchhcCCCccchhhhcccccceeeecccCccccccc----cchhhccchhhhhhccccccc
Confidence 5555555533 2222 2345566666666665532211 112333455555555555543
No 29
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.10 E-value=2.1e-11 Score=101.62 Aligned_cols=133 Identities=27% Similarity=0.332 Sum_probs=83.0
Q ss_pred CCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEE
Q 035512 196 NLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKAL 275 (372)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 275 (372)
....|..+++++|.+. .+.+...-.|.++.|+++.|.+..+. .+..+++|+.||+++|.++ ....+-.++.|+++|
T Consensus 282 TWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 282 TWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTL 357 (490)
T ss_pred hHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeeeh--hhhhcccceEeecccchhH-hhhhhHhhhcCEeee
Confidence 3445666666666654 33334444566777777777765432 3666677777788777766 334455667778888
Q ss_pred eccCCccccccCCCCCcCcCccccccccccCCCccccC-CCccccCCCCCCEEecCCCccccCC
Q 035512 276 KLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF-IPNTLGNLRNLERLNLGDNYLTSST 338 (372)
Q Consensus 276 ~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~ 338 (372)
.+++|.+. .+. ++.++-+|..|++++|++... -...++++|.|+.+.+.+|++...+
T Consensus 358 ~La~N~iE----~LS--GL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v 415 (490)
T KOG1259|consen 358 KLAQNKIE----TLS--GLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV 415 (490)
T ss_pred ehhhhhHh----hhh--hhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence 88877762 222 344666677777777777532 1234667777777777777765544
No 30
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.10 E-value=1.4e-10 Score=92.07 Aligned_cols=127 Identities=31% Similarity=0.270 Sum_probs=42.0
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhh-CCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIF-TTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFL 152 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (372)
.++..+++|+|++|.|+. + +.+. .+.+|+.|++++|.++.. +.+..+++|++|++++|++. .+...+...+++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L 90 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNL 90 (175)
T ss_dssp ----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS----S-CHHHHHH-TT-
T ss_pred cccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCC-ccccchHHhCCcC
Confidence 344466777777777762 2 2344 466777888888777643 34666778888888888877 5555444457788
Q ss_pred cEEEccCCccCcc-CCccCcCCCCCcEEEeecccCcccc---CcchhCCCCCCeeec
Q 035512 153 EILSLQENMFHGA-IPSNLSNCTYLRILSLAYNDFSGAI---PREIGNLTKLKGLYL 205 (372)
Q Consensus 153 ~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~---~~~~~~~~~L~~L~l 205 (372)
+.|.+++|++... ....+..+++|+.|++.+|++.... ...+..+|+|+.|+-
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 8888888777543 1234556677777777777665321 123445556665543
No 31
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.06 E-value=5.9e-11 Score=94.21 Aligned_cols=126 Identities=28% Similarity=0.322 Sum_probs=33.3
Q ss_pred CCCEEEccCCcccccCccccc-CCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccccc
Q 035512 223 VLELMSLAGNNLQEKIPPEIG-NLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLL 301 (372)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 301 (372)
++++|++.+|.+..+ +.+. .+.+|+.|++++|.+... ..+..+++|++|++++|.+ ..+.......++.|+
T Consensus 20 ~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I----~~i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 20 KLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRI----SSISEGLDKNLPNLQ 91 (175)
T ss_dssp ------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS-------S-CHHHHHH-TT--
T ss_pred ccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCC----CccccchHHhCCcCC
Confidence 344444544444432 1222 234455555555555422 2344455555555555554 222111011233344
Q ss_pred ccccCCCccccCC-CccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeC
Q 035512 302 LWDLENNSFSGFI-PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVL 358 (372)
Q Consensus 302 ~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l 358 (372)
.|++++|++.+.- ...+..+++|+.|++.+|++......-.+ .+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~--vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLF--VIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHH--HHHH-TT-SEETT
T ss_pred EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHH--HHHHcChhheeCC
Confidence 4455555554321 12345567777777777776654322001 2455677777754
No 32
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.03 E-value=4.4e-10 Score=103.38 Aligned_cols=192 Identities=34% Similarity=0.503 Sum_probs=116.6
Q ss_pred EEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCC-CCCEEEccCCccccccChhhhcCCCCccEEEccC
Q 035512 81 SLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKS-SLQHLDFTFNTLSGEIPANICSNLPFLEILSLQE 159 (372)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (372)
.+.+..+.+. .....+..+..+..|++.++.++ ..+....... +|+.|++++|.+. .++..+. .+++|+.|+++.
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~-~l~~L~~L~l~~ 172 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLR-NLPNLKNLDLSF 172 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhh-ccccccccccCC
Confidence 4566665553 22333445566777777777666 3344444453 6777777777766 5543333 577777777777
Q ss_pred CccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCc
Q 035512 160 NMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239 (372)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 239 (372)
|.+.. .+......+.|+.|++++|.+. ..+........|+++.+++|... ..+..+.....+..+.+.++.+.. .+
T Consensus 173 N~l~~-l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~ 248 (394)
T COG4886 173 NDLSD-LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LP 248 (394)
T ss_pred chhhh-hhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-cc
Confidence 77653 3333336677777777777766 33433344455777777777432 333445666666666666666543 24
Q ss_pred ccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 240 PEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 240 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
..+..++.+++|++++|.++.... +....+++.|+++++.+
T Consensus 249 ~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 249 ESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSL 289 (394)
T ss_pred chhccccccceecccccccccccc--ccccCccCEEeccCccc
Confidence 556666677777777777764433 66777777777777765
No 33
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.99 E-value=9.9e-10 Score=101.07 Aligned_cols=181 Identities=34% Similarity=0.546 Sum_probs=96.0
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCC-CCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTY-TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFL 152 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L 152 (372)
..++.++.|.+.++.++ .++....... +|+.|++++|.+. ..+..+..+++|+.|++++|++. .++.... ..+.|
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~-~~~~L 188 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLS-NLSNL 188 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhh-hhhhh
Confidence 33455666666666665 4444444443 6666666666555 33344555666666666666665 4444332 45566
Q ss_pred cEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCC
Q 035512 153 EILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232 (372)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 232 (372)
+.|++++|.+. .++........|+++.+++|... ..+..+....++..+.+.++++.. .+..++.++.++.|++++|
T Consensus 189 ~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n 265 (394)
T COG4886 189 NNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNN 265 (394)
T ss_pred hheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccceeccccc
Confidence 66666666654 22332233344666666665322 233344555555555555555432 2344555555666666666
Q ss_pred cccccCcccccCCCCCCEEEccCCccccccC
Q 035512 233 NLQEKIPPEIGNLRNLEELNLGDNKLVGTIP 263 (372)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 263 (372)
.+..... +....+++.|+++++.+....+
T Consensus 266 ~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 266 QISSISS--LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred ccccccc--ccccCccCEEeccCccccccch
Confidence 6554332 5555666666666665554433
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.98 E-value=4e-10 Score=111.28 Aligned_cols=200 Identities=24% Similarity=0.286 Sum_probs=129.3
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCc--CCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNR--LSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~--~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++.+.+.++.+. ..+.. ..++.|++|-+..|. +.......|..++.|++||+++|.--+.+|..++.+.+||+|+
T Consensus 524 ~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~ 601 (889)
T KOG4658|consen 524 SVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLD 601 (889)
T ss_pred heeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhccc
Confidence 5677777777765 22222 345589999998886 5534445577899999999998877678999999999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCc--cccCcchhCCCCCCeeeccCCc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFS--GAIPREIGNLTKLKGLYLGANR 209 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~~~~~~~~~L~~L~l~~~~ 209 (372)
++++.+. .+|..+. ++.+|.+|++..+......+.....+++|++|.+...... ......+..+.+|+.+......
T Consensus 602 L~~t~I~-~LP~~l~-~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s 679 (889)
T KOG4658|consen 602 LSDTGIS-HLPSGLG-NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISS 679 (889)
T ss_pred ccCCCcc-ccchHHH-HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecch
Confidence 9999988 8888887 7899999999877654455666666899999988665321 1122333455555555553332
Q ss_pred cccccCccccCCCCCC----EEEccCCcccccCcccccCCCCCCEEEccCCcccc
Q 035512 210 LQGEIPREFGNLAVLE----LMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVG 260 (372)
Q Consensus 210 ~~~~~~~~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 260 (372)
. .....+.....|. .+.+.++.. ...+..+..+.+|+.|.+.++.+.+
T Consensus 680 ~--~~~e~l~~~~~L~~~~~~l~~~~~~~-~~~~~~~~~l~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 680 V--LLLEDLLGMTRLRSLLQSLSIEGCSK-RTLISSLGSLGNLEELSILDCGISE 731 (889)
T ss_pred h--HhHhhhhhhHHHHHHhHhhhhccccc-ceeecccccccCcceEEEEcCCCch
Confidence 2 1111122222332 222222221 2234456677788888888887653
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.98 E-value=2.8e-11 Score=109.02 Aligned_cols=196 Identities=27% Similarity=0.443 Sum_probs=147.8
Q ss_pred CCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccE
Q 035512 75 NLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEI 154 (372)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 154 (372)
.+.--...+++.|++. ++|..+..+..|+.+.+..|.+. ..|..++.+..|++++++.|++. .+|..++ .--|+.
T Consensus 73 ~ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC--~lpLkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLC--DLPLKV 147 (722)
T ss_pred cccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhh--cCccee
Confidence 3444566788888887 77888888888888888888776 67788888888999999999887 7888776 334888
Q ss_pred EEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcc
Q 035512 155 LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNL 234 (372)
Q Consensus 155 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 234 (372)
|.+++|+++ .+|..++....|..||.+.|.+. .++.-+.++.+|+.|.+..|.+. .+|..+..+ .|..|+++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 888888887 66777778888889999988877 56667788888888888888876 455556533 577888888887
Q ss_pred cccCcccccCCCCCCEEEccCCccccccCccccCcC---CCCEEeccCCc
Q 035512 235 QEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVS---KLKALKLYSNS 281 (372)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~L~~L~l~~~~ 281 (372)
. .+|..|.++..|++|-|.+|++. ..|..++-.. -.++|+...|+
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 6 47778888888888888888886 4444443222 23556665553
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.97 E-value=2.7e-10 Score=95.12 Aligned_cols=126 Identities=25% Similarity=0.281 Sum_probs=65.5
Q ss_pred CccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEcc
Q 035512 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLA 230 (372)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 230 (372)
.|+.++++.|.+. ...+++.-.|.++.|+++.|.+... ..+..+++|..|++++|.+.. ...+-..+.++++|.++
T Consensus 285 ~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La 360 (490)
T KOG1259|consen 285 ELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLA 360 (490)
T ss_pred hhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehh
Confidence 3555555555554 3344444455555666655555422 224555556666666655542 22233344555666666
Q ss_pred CCcccccCcccccCCCCCCEEEccCCccccc-cCccccCcCCCCEEeccCCcc
Q 035512 231 GNNLQEKIPPEIGNLRNLEELNLGDNKLVGT-IPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 231 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~ 282 (372)
+|.+.+. ..+..+=+|..||+++|++... -...++++|-|+.+.+.+|++
T Consensus 361 ~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 361 QNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 6655321 2233344566666666666422 124456666667776666665
No 37
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.92 E-value=2.2e-11 Score=109.72 Aligned_cols=172 Identities=30% Similarity=0.464 Sum_probs=97.5
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
..+..+++.|.+. .+|..+..+-.|+.+.+..|.+. .+|.++..+..|.+|+++.|.+. ..|..++.++ |+.|-++
T Consensus 76 dt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~s 151 (722)
T KOG0532|consen 76 DTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVS 151 (722)
T ss_pred chhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEe
Confidence 3445566666664 55555555556666666666655 55666666666666666666655 4555555554 5666666
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
+|+++ .+|..+. ..+.|..|+.+.|.+. .++..++.+.+|+.|.+..|++. .+|..+..++ |..|+++.|++. .
T Consensus 152 NNkl~-~lp~~ig-~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~Lp-Li~lDfScNkis-~ 225 (722)
T KOG0532|consen 152 NNKLT-SLPEEIG-LLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSLP-LIRLDFSCNKIS-Y 225 (722)
T ss_pred cCccc-cCCcccc-cchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCCc-eeeeecccCcee-e
Confidence 66665 5555555 5556666666666554 34444555555666655555554 2333333332 555666666554 4
Q ss_pred cCccccCCCCCCEEEccCCccc
Q 035512 214 IPREFGNLAVLELMSLAGNNLQ 235 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~ 235 (372)
+|-.|..+..|++|.|.+|.+.
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC
Confidence 4555556666666666666554
No 38
>PLN03150 hypothetical protein; Provisional
Probab=98.81 E-value=1.5e-08 Score=97.81 Aligned_cols=106 Identities=31% Similarity=0.512 Sum_probs=64.9
Q ss_pred CCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEee
Q 035512 103 LKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLA 182 (372)
Q Consensus 103 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 182 (372)
++.|+|+++.+.+..|..+..+++|+.|++++|.+.+.+|..+. .+++|+.|++++|.+.+..|..+.++++|+.|+++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 55566666666666666666666666666666666655555543 56666666666666666666666666666666666
Q ss_pred cccCccccCcchhCC-CCCCeeeccCCc
Q 035512 183 YNDFSGAIPREIGNL-TKLKGLYLGANR 209 (372)
Q Consensus 183 ~~~~~~~~~~~~~~~-~~L~~L~l~~~~ 209 (372)
+|.+.+..|..+... .++..+++.+|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~ 526 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNA 526 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCc
Confidence 666665555554432 234556666554
No 39
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.80 E-value=5.8e-09 Score=68.12 Aligned_cols=59 Identities=39% Similarity=0.546 Sum_probs=39.9
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCc
Q 035512 223 VLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNS 281 (372)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 281 (372)
+|++|++++|.+....+..|..+++|++|++++|.+....+.+|.++++|++|++++|+
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 56666666666666555666666777777777777666666667777777777777665
No 40
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.78 E-value=4.2e-09 Score=68.78 Aligned_cols=59 Identities=44% Similarity=0.623 Sum_probs=39.1
Q ss_pred ccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcc
Q 035512 300 LLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPL 363 (372)
Q Consensus 300 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l 363 (372)
|+.|++++|+++...+.+|.++++|++|++++|.+....+. .|.++++|++|++++|+|
T Consensus 3 L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~-----~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 3 LESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPD-----AFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp ESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETT-----TTTTSTTESEEEETSSSB
T ss_pred CcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHH-----HHcCCCCCCEEeCcCCcC
Confidence 44446667766655556667777777777777777666655 466777777777777764
No 41
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.74 E-value=1.4e-09 Score=100.25 Aligned_cols=244 Identities=26% Similarity=0.350 Sum_probs=138.4
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
..+..++.+.++.|.+. .....+..+.+|+.|++.+|.+... ...+..+++|++|++++|.+. .+..- ..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~-~i~~l--~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKIT-KLEGL--STLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhh-hhhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccc-cccch--hhccchh
Confidence 45566667777777776 2334466777888888888877643 222667788888888888876 33332 2456688
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCccccC-cchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCC
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIP-REIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 232 (372)
.|++.+|.+... ..+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+... ..+.....+..+++..|
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccc
Confidence 888888877532 334457778888888877764432 1 46677777788877766522 12233333344455566
Q ss_pred cccccCcccccCCC--CCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCcc
Q 035512 233 NLQEKIPPEIGNLR--NLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSF 310 (372)
Q Consensus 233 ~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 310 (372)
.+....+ +.... +|+.+++++|++... +..+..+..+..+++.++++. ... .++....+..+....+.+
T Consensus 219 ~i~~~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~----~~~--~~~~~~~~~~~~~~~~~~ 289 (414)
T KOG0531|consen 219 KISKLEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRIS----NLE--GLERLPKLSELWLNDNKL 289 (414)
T ss_pred cceeccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccc----ccc--cccccchHHHhccCcchh
Confidence 5544322 11122 266777777766522 234555666667777666552 111 222333333335555544
Q ss_pred ccC---CCc-cccCCCCCCEEecCCCcccc
Q 035512 311 SGF---IPN-TLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 311 ~~~---~~~-~~~~~~~L~~L~l~~n~~~~ 336 (372)
... ... .....+.++.+.+..++...
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 290 ALSEAISQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred cchhhhhccccccccccccccccccCcccc
Confidence 311 111 13345566666666665544
No 42
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.64 E-value=3.4e-09 Score=97.77 Aligned_cols=243 Identities=25% Similarity=0.287 Sum_probs=136.7
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
.+..+.++.+.+.. .-..+..++++..|++..|.+. .+...+..+++|++|++++|.++.. ..+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchh-hcccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 44455566666652 2333667778888888888876 3333366778888888888877654 335566668888888
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCC-ccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIP-SNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
+|.+. .+.. +..++.|+.+++++|.+..... . ...+..++.+.+.+|.+... ..+.....+..+.+..|.+..
T Consensus 149 ~N~i~-~~~~--~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~ 222 (414)
T KOG0531|consen 149 GNLIS-DISG--LESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKISK 222 (414)
T ss_pred cCcch-hccC--CccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhccccccee
Confidence 88776 3333 2237778888888887764433 2 45677777778877766533 223333334444566665542
Q ss_pred ccCccccCCC--CCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCC
Q 035512 213 EIPREFGNLA--VLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIP 290 (372)
Q Consensus 213 ~~~~~l~~~~--~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 290 (372)
.-+ +.... +|+.++++++.+... +..+..+..+..+++.++.+... ..+...+.+..+....+++........
T Consensus 223 ~~~--l~~~~~~~L~~l~l~~n~i~~~-~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (414)
T KOG0531|consen 223 LEG--LNELVMLHLRELYLSGNRISRS-PEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQ 297 (414)
T ss_pred ccC--cccchhHHHHHHhcccCccccc-cccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhc
Confidence 211 11111 367777777776542 13455566777777777766422 223344555555555555432211111
Q ss_pred CcCcCccccccccccCCCccc
Q 035512 291 DFRLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 291 ~~~~~~l~~L~~l~l~~~~~~ 311 (372)
....+....++...+..+.+.
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~ 318 (414)
T KOG0531|consen 298 EYITSAAPTLVTLTLELNPIR 318 (414)
T ss_pred cccccccccccccccccCccc
Confidence 111223344444455555544
No 43
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.54 E-value=8.8e-10 Score=91.93 Aligned_cols=184 Identities=20% Similarity=0.137 Sum_probs=122.2
Q ss_pred CCCcEEEeecccCccc-cCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccC--cccccCCCCCCE
Q 035512 174 TYLRILSLAYNDFSGA-IPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKI--PPEIGNLRNLEE 250 (372)
Q Consensus 174 ~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~L~~ 250 (372)
..|+++|+++..++.. ....+.+|.+|+.|.+.++++.+.+...++...+|+.|++++|...... .-.+..|+.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 4588899988777643 2344678889999999999988877778888899999999987643322 234578889999
Q ss_pred EEccCCccccccC-ccccC-cCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCcc-ccCCCccccCCCCCCEE
Q 035512 251 LNLGDNKLVGTIP-TAIFN-VSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSF-SGFIPNTLGNLRNLERL 327 (372)
Q Consensus 251 L~l~~~~~~~~~~-~~~~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~-~~~~~~~~~~~~~L~~L 327 (372)
|+++.|....... ..+.. -++|+.|+++|+.-.-....+.. ....+++|..||+++|.. +......|..++.|++|
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~t-L~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~l 343 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLST-LVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHL 343 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHH-HHHhCCceeeeccccccccCchHHHHHHhcchheee
Confidence 9999886642221 11222 36888899988763110011110 112556666679988753 32223356678999999
Q ss_pred ecCCCccccCCCCCcccccccCCCCCcEEeCcCCc
Q 035512 328 NLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 328 ~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
.++.|... +|+... .+...|+|.+||+.+|-
T Consensus 344 SlsRCY~i--~p~~~~--~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 344 SLSRCYDI--IPETLL--ELNSKPSLVYLDVFGCV 374 (419)
T ss_pred ehhhhcCC--ChHHee--eeccCcceEEEEecccc
Confidence 99999743 343111 36777899999988763
No 44
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.50 E-value=7.1e-10 Score=102.90 Aligned_cols=128 Identities=32% Similarity=0.421 Sum_probs=91.0
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccc
Q 035512 223 VLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLL 302 (372)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~ 302 (372)
.|.+.+++.|.++ .....+.-++.|+.|+|+.|+++... .+..++.|++|+|+.|.+ ..++......+. |..
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L----~~vp~l~~~gc~-L~~ 236 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCL----RHVPQLSMVGCK-LQL 236 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchh----ccccccchhhhh-hee
Confidence 4666677777664 24456667788888999998887543 677888999999998888 666666666665 777
Q ss_pred cccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCccc
Q 035512 303 WDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLD 364 (372)
Q Consensus 303 l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 364 (372)
|.+++|.++.. ..+.++.+|+.||+++|-+.+-- ++- -+..+..|+.|++.|||+-
T Consensus 237 L~lrnN~l~tL--~gie~LksL~~LDlsyNll~~hs-eL~---pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 237 LNLRNNALTTL--RGIENLKSLYGLDLSYNLLSEHS-ELE---PLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred eeecccHHHhh--hhHHhhhhhhccchhHhhhhcch-hhh---HHHHHHHHHHHhhcCCccc
Confidence 88998888733 24677888899999988765432 111 1334567888888888863
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.49 E-value=3.5e-08 Score=82.53 Aligned_cols=234 Identities=18% Similarity=0.134 Sum_probs=126.0
Q ss_pred CCCEEEcccccccCCC--CccccCCCCCCEEEccCCcccc-ccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcE
Q 035512 102 TLKYVNLRQNQLSGAL--PSFIFNKSSLQHLDFTFNTLSG-EIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRI 178 (372)
Q Consensus 102 ~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 178 (372)
-++.|.+.++.+.... ...-..+.+++.+|+.+|.+.+ +-...+.+.+|.|++|+++.|.+...+...-....+|+.
T Consensus 46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 3444555555443211 1111245678888888887753 222344567888888888877765332211124456777
Q ss_pred EEeecccCccc-cCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCc
Q 035512 179 LSLAYNDFSGA-IPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNK 257 (372)
Q Consensus 179 L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 257 (372)
|.+.++.+.-. ....+..+|.++.|.++.|.++. +++..+.+... -+.+.++.+.+|.
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq--------------~n~Dd~c~e~~-------s~~v~tlh~~~c~ 184 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ--------------LNLDDNCIEDW-------STEVLTLHQLPCL 184 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh--------------hcccccccccc-------chhhhhhhcCCcH
Confidence 77777655422 12334566667777776664331 11211111110 0233444444443
Q ss_pred cccc--cCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccC-CCccccCCCCCCEEecCCCcc
Q 035512 258 LVGT--IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF-IPNTLGNLRNLERLNLGDNYL 334 (372)
Q Consensus 258 ~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~ 334 (372)
.... .-..-...|++..+.+..|++.+.-..-. +..++.+..|+++.+++.+. -.+++.++++|..|.++++++
T Consensus 185 ~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~---se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl 261 (418)
T KOG2982|consen 185 EQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKG---SEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPL 261 (418)
T ss_pred HHHHHHHHhHHhhcccchheeeecCcccchhhccc---CCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCcc
Confidence 2100 00111234777888888777743322222 23344444558888888753 235678899999999999988
Q ss_pred ccCCCC-CcccccccCCCCCcEEeCc
Q 035512 335 TSSTPE-LSFLSSLSNFKSLTHIVLS 359 (372)
Q Consensus 335 ~~~~~~-~~~~~~l~~~~~L~~L~l~ 359 (372)
...... ....--++++++++.|+=+
T Consensus 262 ~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 262 SDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred cccccCCcceEEEEeeccceEEecCc
Confidence 755433 2221236788888888644
No 46
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.48 E-value=1.3e-09 Score=90.92 Aligned_cols=57 Identities=26% Similarity=0.289 Sum_probs=25.3
Q ss_pred CCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeec
Q 035512 127 LQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAY 183 (372)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 183 (372)
||+||++...++......+.+.|.+|+.|.+.+.++.+.+...+.+-.+|+.|+++.
T Consensus 187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccc
Confidence 444555544443333333333444455555544444443333344444444444444
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.43 E-value=4.3e-08 Score=82.03 Aligned_cols=85 Identities=24% Similarity=0.244 Sum_probs=39.2
Q ss_pred CCCCCEEECCCCcCCCC--CChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 76 LSSLQSLNLSFNRLSGS--IPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 76 l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
+..++.++|.+|.|.+. +...+.++|.|++|+++.|.+...+-..-....+|++|-+.+..+...-...+...+|+++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 34555555555555422 1222334555555555555544221111123345555555555444333333344455555
Q ss_pred EEEccCC
Q 035512 154 ILSLQEN 160 (372)
Q Consensus 154 ~L~l~~~ 160 (372)
.|+++.|
T Consensus 150 elHmS~N 156 (418)
T KOG2982|consen 150 ELHMSDN 156 (418)
T ss_pred hhhhccc
Confidence 5555544
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.42 E-value=4.2e-08 Score=81.07 Aligned_cols=162 Identities=19% Similarity=0.182 Sum_probs=80.3
Q ss_pred ccCCCCCCEEEccCCccccccChh---hhcCCCCccEEEccCCccCccCCccC-------------cCCCCCcEEEeecc
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPAN---ICSNLPFLEILSLQENMFHGAIPSNL-------------SNCTYLRILSLAYN 184 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l-------------~~l~~L~~L~l~~~ 184 (372)
+-+||+|+.+++|.|.+....|.. +.++...|.+|.+.+|.+......-+ .+-|.|+...+..|
T Consensus 88 Llkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrN 167 (388)
T COG5238 88 LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRN 167 (388)
T ss_pred HhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccc
Confidence 445666666666666554444432 22344556666666665432111111 12355666666655
Q ss_pred cCccc----cCcchhCCCCCCeeeccCCccccccCc-----cccCCCCCCEEEccCCccccc----CcccccCCCCCCEE
Q 035512 185 DFSGA----IPREIGNLTKLKGLYLGANRLQGEIPR-----EFGNLAVLELMSLAGNNLQEK----IPPEIGNLRNLEEL 251 (372)
Q Consensus 185 ~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L 251 (372)
.+..- ....+....+|+.+.+..|.+...... .+..+++|+.|++..|.++.. ....++.++.|+.|
T Consensus 168 Rlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL 247 (388)
T COG5238 168 RLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLREL 247 (388)
T ss_pred hhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhc
Confidence 54311 111223334566666666655432111 123456666666666665432 22344555666777
Q ss_pred EccCCccccccCcc----cc--CcCCCCEEeccCCcc
Q 035512 252 NLGDNKLVGTIPTA----IF--NVSKLKALKLYSNSL 282 (372)
Q Consensus 252 ~l~~~~~~~~~~~~----~~--~~~~L~~L~l~~~~~ 282 (372)
.+.+|-+......+ |. ..|+|+.|...+|.+
T Consensus 248 ~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~ 284 (388)
T COG5238 248 RLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNER 284 (388)
T ss_pred cccchhhccccHHHHHHHhhhhcCCCccccccchhhh
Confidence 77777554221111 11 246777777776655
No 49
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.34 E-value=7.5e-07 Score=53.16 Aligned_cols=40 Identities=43% Similarity=0.997 Sum_probs=31.4
Q ss_pred hhHHHHHHHHHHhccCCCCccccCCCCCC--CCCCcccceeec
Q 035512 9 TTDRDALLALKAHITHDPTNFFAKNWNTN--ISFCNWTGVACD 49 (372)
Q Consensus 9 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~ 49 (372)
+.|+++|++||..+..+|...+. +|... .++|.|.|+.|.
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~-~W~~~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLS-SWNPSSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCT-T--TT--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccc-cCCCcCCCCCeeeccEEeC
Confidence 57999999999999778888898 99998 799999999994
No 50
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.25 E-value=2.4e-08 Score=87.25 Aligned_cols=84 Identities=14% Similarity=0.033 Sum_probs=48.0
Q ss_pred CCCEEECCCCcCC-CC-CChhhhCCCCCCEEEcccccc-cCCCCcc-ccCCCCCCEEEccCCc-cccccChhhhcCCCCc
Q 035512 78 SLQSLNLSFNRLS-GS-IPSAIFTTYTLKYVNLRQNQL-SGALPSF-IFNKSSLQHLDFTFNT-LSGEIPANICSNLPFL 152 (372)
Q Consensus 78 ~L~~L~l~~~~~~-~~-~~~~~~~l~~L~~L~l~~~~~-~~~~~~~-l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L 152 (372)
.|+.|.++++.-. .. +......+++++.|.+.+|.. ++..-.. -..+++|+++++..|. ++......+...+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 5677777776532 11 223334677777777777642 2111111 2256777777777743 4434444566677777
Q ss_pred cEEEccCCc
Q 035512 153 EILSLQENM 161 (372)
Q Consensus 153 ~~L~l~~~~ 161 (372)
++|+++.|.
T Consensus 219 ~~lNlSwc~ 227 (483)
T KOG4341|consen 219 KYLNLSWCP 227 (483)
T ss_pred HHhhhccCc
Confidence 777777764
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.22 E-value=6.3e-08 Score=90.32 Aligned_cols=182 Identities=25% Similarity=0.248 Sum_probs=115.6
Q ss_pred CccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCc------cCCccCc---CCCCCcEEEeecccCcc
Q 035512 118 PSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHG------AIPSNLS---NCTYLRILSLAYNDFSG 188 (372)
Q Consensus 118 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------~~~~~l~---~l~~L~~L~l~~~~~~~ 188 (372)
|-.+..+.+|++|.+.++++. . ..++..--..|++|...+. ++. .-...+. .+..|...+++.|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~-~-~~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLS-T-AKGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchh-h-hhhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 666778889999999998875 2 1111111122444433221 110 0000111 1234556667777665
Q ss_pred ccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccC
Q 035512 189 AIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFN 268 (372)
Q Consensus 189 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 268 (372)
.....+.-++.++.|+++.|++...- .+..+++|++|+++.|.+..+.--.-..| +|+.|.+++|.++.. ..+.+
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh--hhHHh
Confidence 44556778888999999999887543 68889999999999998865332222333 489999999988633 45678
Q ss_pred cCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccc
Q 035512 269 VSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 311 (372)
+.+|+.|++++|-+.+- ..+ ..+..|..|+.|+|.+|.+.
T Consensus 253 LksL~~LDlsyNll~~h-seL--~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEH-SEL--EPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred hhhhhccchhHhhhhcc-hhh--hHHHHHHHHHHHhhcCCccc
Confidence 88999999998877432 111 12346677778899998875
No 52
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.20 E-value=2.1e-08 Score=87.62 Aligned_cols=107 Identities=20% Similarity=0.191 Sum_probs=69.5
Q ss_pred CCCEEEcccccccCCCC--ccccCCCCCCEEEccCCc-cccccChhhhcCCCCccEEEccCCc-cCcc-CCccCcCCCCC
Q 035512 102 TLKYVNLRQNQLSGALP--SFIFNKSSLQHLDFTFNT-LSGEIPANICSNLPFLEILSLQENM-FHGA-IPSNLSNCTYL 176 (372)
Q Consensus 102 ~L~~L~l~~~~~~~~~~--~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L 176 (372)
.|+.|.++++.-.+..+ .....+|++++|.+.++. +++.....+...+++|+++++..|. ++.. +......+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 58899999886544322 234478999999999986 3434445566789999999998854 3332 22234568899
Q ss_pred cEEEeecccC-ccccC-cchhCCCCCCeeeccCC
Q 035512 177 RILSLAYNDF-SGAIP-REIGNLTKLKGLYLGAN 208 (372)
Q Consensus 177 ~~L~l~~~~~-~~~~~-~~~~~~~~L~~L~l~~~ 208 (372)
.+++++++.- .+... ....++..++.+...+|
T Consensus 219 ~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC 252 (483)
T KOG4341|consen 219 KYLNLSWCPQISGNGVQALQRGCKELEKLSLKGC 252 (483)
T ss_pred HHhhhccCchhhcCcchHHhccchhhhhhhhccc
Confidence 9999998753 32211 22344555666666655
No 53
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.09 E-value=2.2e-07 Score=76.89 Aligned_cols=217 Identities=18% Similarity=0.181 Sum_probs=145.5
Q ss_pred CCCCccEEEccCCccCcc----CCccCcCCCCCcEEEeecccCc---c-------ccCcchhCCCCCCeeeccCCccccc
Q 035512 148 NLPFLEILSLQENMFHGA----IPSNLSNCTYLRILSLAYNDFS---G-------AIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~---~-------~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
-+..+..+++++|.+... +...+.+-.+|+..+++.-... . .+...+-.||.++..++++|.+...
T Consensus 28 ~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 28 MMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred hhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 378899999999987642 2234455677888777754322 1 1223456889999999999987654
Q ss_pred cC----ccccCCCCCCEEEccCCcccccCccc-------------ccCCCCCCEEEccCCccccc----cCccccCcCCC
Q 035512 214 IP----REFGNLAVLELMSLAGNNLQEKIPPE-------------IGNLRNLEELNLGDNKLVGT----IPTAIFNVSKL 272 (372)
Q Consensus 214 ~~----~~l~~~~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L 272 (372)
.+ +.++....|.+|.+.+|.+..+...- ...-|.|+++.+..|++..- ....+....+|
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~l 187 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENL 187 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCc
Confidence 44 34567788999999999875432111 12457899999999987422 22344555799
Q ss_pred CEEeccCCcccccc-CCCCCcCcCccccccccccCCCccccC----CCccccCCCCCCEEecCCCccccCCCC-C-cccc
Q 035512 273 KALKLYSNSLLGSL-SSIPDFRLPNLEVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGDNYLTSSTPE-L-SFLS 345 (372)
Q Consensus 273 ~~L~l~~~~~~~~~-~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~-~-~~~~ 345 (372)
+++.+..|.+..+. ..+....+..+++|+.|++..|-++.. +..++...+.|++|.+.+|-++..... . ..+
T Consensus 188 k~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f- 266 (388)
T COG5238 188 KEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRF- 266 (388)
T ss_pred eeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHh-
Confidence 99999999885432 112223455788899999999988743 223444556789999999988766543 1 101
Q ss_pred cccCCCCCcEEeCcCCcccc
Q 035512 346 SLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 346 ~l~~~~~L~~L~l~~~~l~~ 365 (372)
.-...|+|+.|-..||.+.+
T Consensus 267 ~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 267 NEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hhhcCCCccccccchhhhcC
Confidence 11235889999999998654
No 54
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=98.02 E-value=1.5e-05 Score=63.45 Aligned_cols=104 Identities=21% Similarity=0.221 Sum_probs=67.9
Q ss_pred CCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccC-CccCcCCCCCcEE
Q 035512 101 YTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAI-PSNLSNCTYLRIL 179 (372)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~l~~l~~L~~L 179 (372)
.+...+|+++|.+.. ...|..++.|.+|.+++|+++ .+...+...+++|+.|.+.+|.+.... ...+..++.|++|
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt-~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~L 118 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRIT-RIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYL 118 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcce-eeccchhhhccccceEEecCcchhhhhhcchhccCCcccee
Confidence 356667777776642 245667777888888888887 666666667778888888877765431 1235567777888
Q ss_pred EeecccCcccc---CcchhCCCCCCeeeccC
Q 035512 180 SLAYNDFSGAI---PREIGNLTKLKGLYLGA 207 (372)
Q Consensus 180 ~l~~~~~~~~~---~~~~~~~~~L~~L~l~~ 207 (372)
.+-+|+++... ...+..+|+|+.|++.+
T Consensus 119 tll~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 119 TLLGNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred eecCCchhcccCceeEEEEecCcceEeehhh
Confidence 77777665432 23455666666666654
No 55
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.93 E-value=4.4e-05 Score=58.14 Aligned_cols=121 Identities=21% Similarity=0.285 Sum_probs=35.6
Q ss_pred hcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCC
Q 035512 146 CSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLE 225 (372)
Q Consensus 146 ~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 225 (372)
|..+.+|+.+.+.. .+.......+..++.|+.+.+..+ +.......+..+.+++.+.+.. .+.......+..+..|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 33444444444432 122223333444444444444432 2222233344444444444433 22112223344444455
Q ss_pred EEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCC
Q 035512 226 LMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKL 272 (372)
Q Consensus 226 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 272 (372)
.+.+..+ +.......|..+ .|+.+.+.. .+.......|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5544432 222233334443 455554443 2222333444444443
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.92 E-value=2.5e-06 Score=82.66 Aligned_cols=138 Identities=17% Similarity=0.241 Sum_probs=70.9
Q ss_pred CCCCEEEccCCccccc-Cccc-ccCCCCCCEEEccCCccccc-cCccccCcCCCCEEeccCCccccccCCCCCcCcCccc
Q 035512 222 AVLELMSLAGNNLQEK-IPPE-IGNLRNLEELNLGDNKLVGT-IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLE 298 (372)
Q Consensus 222 ~~L~~L~l~~~~~~~~-~~~~-l~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~ 298 (372)
.+|++|+++|...... -+.. -..+|+|++|.+.+-.+... ......++|+|..||++++.+ ..+ .++..|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI----~nl--~GIS~Lk 195 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNI----SNL--SGISRLK 195 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCc----cCc--HHHhccc
Confidence 4566666665432211 1111 12456667776666554322 222334567777777777666 222 2445666
Q ss_pred cccccccCCCccccC-CCccccCCCCCCEEecCCCccccCCCC-CcccccccCCCCCcEEeCcCCcccc
Q 035512 299 VLLLWDLENNSFSGF-IPNTLGNLRNLERLNLGDNYLTSSTPE-LSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 299 ~L~~l~l~~~~~~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
+|+.|.+.+-.+... ....+.++++|+.||+|.........- ..+...-..+|.|+.||.|++.+.+
T Consensus 196 nLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 196 NLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred cHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 666666666555431 112345677777777776554333210 1122233346777777777766543
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.89 E-value=7.4e-06 Score=48.96 Aligned_cols=37 Identities=49% Similarity=0.748 Sum_probs=21.0
Q ss_pred CCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 323 NLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 323 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
+|++|++++|++...++. ++.+++|+.|++++|+++.
T Consensus 2 ~L~~L~l~~N~i~~l~~~------l~~l~~L~~L~l~~N~i~~ 38 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPE------LSNLPNLETLNLSNNPISD 38 (44)
T ss_dssp T-SEEEETSSS-SSHGGH------GTTCTTSSEEEETSSCCSB
T ss_pred cceEEEccCCCCcccCch------HhCCCCCCEEEecCCCCCC
Confidence 566666666666554432 5566666666666666654
No 58
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.77 E-value=2.4e-05 Score=46.71 Aligned_cols=36 Identities=31% Similarity=0.516 Sum_probs=15.0
Q ss_pred CCCEEECCCCcCCCCCChhhhCCCCCCEEEccccccc
Q 035512 78 SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLS 114 (372)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 114 (372)
+|++|++++|.++ .++..+.++++|++|++++|.++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444444444444 23333444444444444444443
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.77 E-value=1.1e-06 Score=65.31 Aligned_cols=106 Identities=22% Similarity=0.217 Sum_probs=67.5
Q ss_pred CeeeccCCcccc--ccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEecc
Q 035512 201 KGLYLGANRLQG--EIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLY 278 (372)
Q Consensus 201 ~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~ 278 (372)
..+++++|++-. ..+..+.....|..+++++|.+.+..+.....++.++.|++.+|.+. ..|..++.+|.|+.|+++
T Consensus 30 h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~ 108 (177)
T KOG4579|consen 30 HFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLR 108 (177)
T ss_pred hhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccc
Confidence 445555554431 11223344456667777777776554444456667888888888877 556668888888888888
Q ss_pred CCccccccCCCCCcCcCccccccccccCCCcccc
Q 035512 279 SNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSG 312 (372)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 312 (372)
.|++ ...+...++ +.+|..|+..+|....
T Consensus 109 ~N~l----~~~p~vi~~-L~~l~~Lds~~na~~e 137 (177)
T KOG4579|consen 109 FNPL----NAEPRVIAP-LIKLDMLDSPENARAE 137 (177)
T ss_pred cCcc----ccchHHHHH-HHhHHHhcCCCCcccc
Confidence 8877 444544444 6777666777776653
No 60
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.74 E-value=0.00014 Score=55.25 Aligned_cols=121 Identities=21% Similarity=0.308 Sum_probs=40.1
Q ss_pred ccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCC
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 200 (372)
|.++.+|+.+.+.. .+. .+....|..+++|+.+.+..+ +.......+.+++.++.+.+.+ .+.......|..++++
T Consensus 8 F~~~~~l~~i~~~~-~~~-~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIK-KIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HhCCCCCCEEEECC-Cee-EeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 33444444444442 222 344444444445555554442 3333334444444555555543 2222233344445555
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNL 248 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 248 (372)
+.+.+..+ +.......+.++ .|+.+.+.. .+..+....|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 55555433 222333344444 555555544 2333334445444443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.73 E-value=9.1e-05 Score=59.03 Aligned_cols=59 Identities=25% Similarity=0.260 Sum_probs=26.6
Q ss_pred CCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcc
Q 035512 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (372)
.+...+++.+|.+.. ...+..++.|++|.+++|.++.+.+..-..++++..|.+.+|.+
T Consensus 42 d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi 100 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSI 100 (233)
T ss_pred cccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcch
Confidence 344444555444421 12334445555555555555544443334444455555554443
No 62
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.64 E-value=0.00051 Score=61.93 Aligned_cols=138 Identities=17% Similarity=0.180 Sum_probs=72.4
Q ss_pred cCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCE
Q 035512 171 SNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEE 250 (372)
Q Consensus 171 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 250 (372)
..+..++.|++++|.+. .+| .-.++|+.|.+++|.....+|..+ ..+|+.|.+++|.....+| ++|+.
T Consensus 49 ~~~~~l~~L~Is~c~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~ 116 (426)
T PRK15386 49 EEARASGRLYIKDCDIE-SLP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRS 116 (426)
T ss_pred HHhcCCCEEEeCCCCCc-ccC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccce
Confidence 34577888888887665 333 122358888887764433444433 2467788887773222222 35677
Q ss_pred EEccCCccccccCccccCc-CCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEec
Q 035512 251 LNLGDNKLVGTIPTAIFNV-SKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNL 329 (372)
Q Consensus 251 L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 329 (372)
|++.++.... +..+ ++|+.|.+.++..... ...+. .+| .+|+.|++++|... ..|..+. .+|+.|.+
T Consensus 117 L~L~~n~~~~-----L~~LPssLk~L~I~~~n~~~~-~~lp~-~LP--sSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 117 LEIKGSATDS-----IKNVPNGLTSLSINSYNPENQ-ARIDN-LIS--PSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred EEeCCCCCcc-----cccCcchHhheeccccccccc-ccccc-ccC--CcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 7776554321 2223 2566777654321000 00110 111 34555577777654 2333232 47777777
Q ss_pred CCC
Q 035512 330 GDN 332 (372)
Q Consensus 330 ~~n 332 (372)
+.+
T Consensus 185 s~n 187 (426)
T PRK15386 185 HIE 187 (426)
T ss_pred ccc
Confidence 765
No 63
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.64 E-value=5.8e-06 Score=61.52 Aligned_cols=82 Identities=27% Similarity=0.383 Sum_probs=36.6
Q ss_pred cEEEEEeCCCCcccccccccc-CCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 54 RVTVLNISGLNLTGTIPSQLG-NLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
+++.+++++|.+. .+|+.|. .++.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+.
T Consensus 54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS 130 (177)
T ss_pred eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence 4444555555544 3333222 2334455555555544 33444444455555555544443 33333333444444444
Q ss_pred cCCccc
Q 035512 133 TFNTLS 138 (372)
Q Consensus 133 ~~~~~~ 138 (372)
.++...
T Consensus 131 ~~na~~ 136 (177)
T KOG4579|consen 131 PENARA 136 (177)
T ss_pred CCCccc
Confidence 444443
No 64
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=3.6e-05 Score=74.83 Aligned_cols=83 Identities=22% Similarity=0.302 Sum_probs=35.6
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc-ccCcchhCCCCCCe
Q 035512 124 KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG-AIPREIGNLTKLKG 202 (372)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~ 202 (372)
+|.|+.|.+.+-.+...-...++.++|+|..||++++++... .+++++++|+.|.+.+=.+.. .....+..+.+|+.
T Consensus 147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v 224 (699)
T KOG3665|consen 147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV 224 (699)
T ss_pred CcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence 455555555554433222233444555555555555544322 334444555544444332221 11122334444555
Q ss_pred eeccCC
Q 035512 203 LYLGAN 208 (372)
Q Consensus 203 L~l~~~ 208 (372)
|+++..
T Consensus 225 LDIS~~ 230 (699)
T KOG3665|consen 225 LDISRD 230 (699)
T ss_pred eecccc
Confidence 554443
No 65
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.55 E-value=0.0007 Score=61.05 Aligned_cols=53 Identities=13% Similarity=0.170 Sum_probs=29.2
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQN 111 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (372)
+.++.|++++|.++ .+|. -..+|++|.+++|.--..+|..+. .+|++|++++|
T Consensus 52 ~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C 104 (426)
T PRK15386 52 RASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC 104 (426)
T ss_pred cCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence 34667777777665 3341 123577777766543234444332 35677777666
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=2.3e-05 Score=74.20 Aligned_cols=110 Identities=21% Similarity=0.172 Sum_probs=53.6
Q ss_pred CCCCCEEECCCCc-CCCC-CChhhhCCCCCCEEEcccc-cccCCC----CccccCCCCCCEEEccCCc-cccccChhhhc
Q 035512 76 LSSLQSLNLSFNR-LSGS-IPSAIFTTYTLKYVNLRQN-QLSGAL----PSFIFNKSSLQHLDFTFNT-LSGEIPANICS 147 (372)
Q Consensus 76 l~~L~~L~l~~~~-~~~~-~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~ 147 (372)
+++|+.+.+..+. +.+. .......+++|+.|+++++ ...... ......+++|+.++++++. +++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 5666666666653 2211 2233445666666666652 111111 1122344666666666665 44333444444
Q ss_pred CCCCccEEEccCCc-cCcc-CCccCcCCCCCcEEEeeccc
Q 035512 148 NLPFLEILSLQENM-FHGA-IPSNLSNCTYLRILSLAYND 185 (372)
Q Consensus 148 ~l~~L~~L~l~~~~-~~~~-~~~~l~~l~~L~~L~l~~~~ 185 (372)
.+++|+.|.+.+|. ++.. +......++.|++|+++++.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 46666666655554 2321 11223345556666666554
No 67
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.28 E-value=2.5e-05 Score=73.92 Aligned_cols=186 Identities=19% Similarity=0.094 Sum_probs=104.8
Q ss_pred CcEEEEEeCCCCcccc--ccccccCCCCCCEEECCCC-cCCCCC----ChhhhCCCCCCEEEccccc-ccCCCCcccc-C
Q 035512 53 HRVTVLNISGLNLTGT--IPSQLGNLSSLQSLNLSFN-RLSGSI----PSAIFTTYTLKYVNLRQNQ-LSGALPSFIF-N 123 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~--~~~~~~~l~~L~~L~l~~~-~~~~~~----~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~-~ 123 (372)
+.++.+.+.++.-... .......+++|+.|+++++ ...... ......+.+|+.|+++.+. +++.....+. .
T Consensus 188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~ 267 (482)
T KOG1947|consen 188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASR 267 (482)
T ss_pred chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhh
Confidence 4666777776633222 2344567899999999873 221111 1233457889999999887 5554444444 3
Q ss_pred CCCCCEEEccCCc-cccccChhhhcCCCCccEEEccCCccCcc--CCccCcCCCCCcEEEeecccCccccCcchhCCCCC
Q 035512 124 KSSLQHLDFTFNT-LSGEIPANICSNLPFLEILSLQENMFHGA--IPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200 (372)
Q Consensus 124 l~~L~~L~l~~~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 200 (372)
+++|++|.+.+|. +++.....+...++.|++|+++.|..... +.....++++++.|.+..... ++.+
T Consensus 268 c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~----------c~~l 337 (482)
T KOG1947|consen 268 CPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG----------CPSL 337 (482)
T ss_pred CCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------CccH
Confidence 7899999988777 56666666777899999999998765311 112233455555544332211 3333
Q ss_pred CeeeccCCccc---cccCccccCCCCCCEEEccCCcccccC-cccccCCCCC
Q 035512 201 KGLYLGANRLQ---GEIPREFGNLAVLELMSLAGNNLQEKI-PPEIGNLRNL 248 (372)
Q Consensus 201 ~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 248 (372)
+.+.+.++... .........+++++.+.+..+...... ...+.+++.|
T Consensus 338 ~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l 389 (482)
T KOG1947|consen 338 TDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL 389 (482)
T ss_pred HHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence 33333332211 111223456667777777666633322 2334444444
No 68
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.97 E-value=0.00041 Score=57.69 Aligned_cols=40 Identities=30% Similarity=0.468 Sum_probs=16.8
Q ss_pred cCCCCCCEEEccCC--ccccccCccccCcCCCCEEeccCCcc
Q 035512 243 GNLRNLEELNLGDN--KLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 243 ~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
..+++|++|.+++| .+...++-....+|+|+++++++|++
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki 103 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI 103 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence 33444444444444 33322222233334555555554444
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.90 E-value=0.00045 Score=57.43 Aligned_cols=103 Identities=23% Similarity=0.293 Sum_probs=54.4
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCC--cCCCCCChhhhCCCCCCEEEcccccccC-CCCccccCCCCCCE
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFN--RLSGSIPSAIFTTYTLKYVNLRQNQLSG-ALPSFIFNKSSLQH 129 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~--~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~ 129 (372)
..+..+++.++.++.. ..|-.+++|++|.++.| .+...+......+++|++|++++|++.. .....+..+.+|..
T Consensus 43 ~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~ 120 (260)
T KOG2739|consen 43 VELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKS 120 (260)
T ss_pred cchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhh
Confidence 3455555666655422 23555677777777777 4444444444556777777777776652 11112334555666
Q ss_pred EEccCCcccc--ccChhhhcCCCCccEEEc
Q 035512 130 LDFTFNTLSG--EIPANICSNLPFLEILSL 157 (372)
Q Consensus 130 L~l~~~~~~~--~~~~~~~~~l~~L~~L~l 157 (372)
|++.+|..+. ..-...|.-+++|++|+-
T Consensus 121 Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~ 150 (260)
T KOG2739|consen 121 LDLFNCSVTNLDDYREKVFLLLPSLKYLDG 150 (260)
T ss_pred hhcccCCccccccHHHHHHHHhhhhccccc
Confidence 6666665542 111123334555555543
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.87 E-value=3.1e-05 Score=64.72 Aligned_cols=103 Identities=22% Similarity=0.162 Sum_probs=54.8
Q ss_pred CCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCC-CccccCCCCCC
Q 035512 247 NLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFI-PNTLGNLRNLE 325 (372)
Q Consensus 247 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~ 325 (372)
+.+.|++.||.++++ ....++|.|+.|.|+=|++ ..+. .+..|+.|+.|+|+.|.|.+.- ...+.++++|+
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkI----ssL~--pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr 91 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKI----SSLA--PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLR 91 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeecccc----ccch--hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhh
Confidence 445566666665533 2334566666666666665 2222 2445666666667666665321 12356677777
Q ss_pred EEecCCCccccCCCCCcccccccCCCCCcEEe
Q 035512 326 RLNLGDNYLTSSTPELSFLSSLSNFKSLTHIV 357 (372)
Q Consensus 326 ~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~ 357 (372)
.|.|..|+-.+..+.-.-...+--+|+|+.||
T Consensus 92 ~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 92 TLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 77777776554444311111233455555553
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=96.16 E-value=0.002 Score=31.96 Aligned_cols=19 Identities=37% Similarity=0.583 Sum_probs=14.1
Q ss_pred CCcEEeCcCCcccccCCCCC
Q 035512 352 SLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 352 ~L~~L~l~~~~l~~~~p~~~ 371 (372)
+|++||+++|+++ .+|+.|
T Consensus 1 ~L~~Ldls~n~l~-~ip~~~ 19 (22)
T PF00560_consen 1 NLEYLDLSGNNLT-SIPSSF 19 (22)
T ss_dssp TESEEEETSSEES-EEGTTT
T ss_pred CccEEECCCCcCE-eCChhh
Confidence 4778888888888 466655
No 72
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.00024 Score=59.60 Aligned_cols=82 Identities=26% Similarity=0.229 Sum_probs=50.8
Q ss_pred CCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccccc-CccccCCCCCCEE
Q 035512 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEI-PREFGNLAVLELM 227 (372)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L 227 (372)
+.+.+.|++.+|.+.+. ....+++.|+.|.++-|.++.. ..+..|.+|+.|.+..|.+.+.- ...+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55677778877777543 2345677777777777777633 34667777777777777665321 1234555666666
Q ss_pred EccCCcc
Q 035512 228 SLAGNNL 234 (372)
Q Consensus 228 ~l~~~~~ 234 (372)
=|..|..
T Consensus 94 WL~ENPC 100 (388)
T KOG2123|consen 94 WLDENPC 100 (388)
T ss_pred hhccCCc
Confidence 6555543
No 73
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=95.03 E-value=0.012 Score=26.98 Aligned_cols=15 Identities=40% Similarity=0.468 Sum_probs=7.4
Q ss_pred CCCcEEeCcCCcccc
Q 035512 351 KSLTHIVLSNNPLDG 365 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~ 365 (372)
++|+.|++++|+++.
T Consensus 1 ~~L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 1 PNLRTLDLSNNRLTS 15 (17)
T ss_dssp TT-SEEEETSS--SS
T ss_pred CccCEEECCCCCCCC
Confidence 356667777776653
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.21 E-value=0.0063 Score=48.82 Aligned_cols=81 Identities=14% Similarity=0.127 Sum_probs=47.8
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCC-CCCChhhh-CCCCCCEEEccccc-ccCCCCccccCCCCCCEE
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLS-GSIPSAIF-TTYTLKYVNLRQNQ-LSGALPSFIFNKSSLQHL 130 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~-~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L 130 (372)
.++.++-+++.|....-+.+..++.++.|.+.+|+-- +...+.++ -.++|+.|++++|. +++.....+.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 5778888888877666666777777777777777532 22222222 24566666666653 443333444555555555
Q ss_pred EccC
Q 035512 131 DFTF 134 (372)
Q Consensus 131 ~l~~ 134 (372)
.+.+
T Consensus 182 ~l~~ 185 (221)
T KOG3864|consen 182 HLYD 185 (221)
T ss_pred HhcC
Confidence 5554
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=93.57 E-value=0.00014 Score=67.74 Aligned_cols=37 Identities=30% Similarity=0.382 Sum_probs=17.2
Q ss_pred CCEEEccCCccccccChhhh---cCCCCccEEEccCCccC
Q 035512 127 LQHLDFTFNTLSGEIPANIC---SNLPFLEILSLQENMFH 163 (372)
Q Consensus 127 L~~L~l~~~~~~~~~~~~~~---~~l~~L~~L~l~~~~~~ 163 (372)
+..+.+.+|.+.......+. ...+.|..|++++|.+.
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~ 128 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG 128 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc
Confidence 55555666655433222222 23344555555555543
No 76
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=93.02 E-value=0.067 Score=27.54 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=12.8
Q ss_pred CCCcEEeCcCCcccccCCC
Q 035512 351 KSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~~~p~ 369 (372)
++|+.|++++|++..+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777764333
No 77
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=93.02 E-value=0.067 Score=27.54 Aligned_cols=19 Identities=37% Similarity=0.525 Sum_probs=12.8
Q ss_pred CCCcEEeCcCCcccccCCC
Q 035512 351 KSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~~~p~ 369 (372)
++|+.|++++|++..+.++
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 5677777777777764333
No 78
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.90 E-value=0.00038 Score=64.90 Aligned_cols=184 Identities=26% Similarity=0.242 Sum_probs=88.8
Q ss_pred ccEEEccCCccCcc----CCccCcCCCCCcEEEeecccCccccC----cchhCC-CCCCeeeccCCccccc----cCccc
Q 035512 152 LEILSLQENMFHGA----IPSNLSNCTYLRILSLAYNDFSGAIP----REIGNL-TKLKGLYLGANRLQGE----IPREF 218 (372)
Q Consensus 152 L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~----~~~~~~-~~L~~L~l~~~~~~~~----~~~~l 218 (372)
+..+.+.+|.+... +...+...+.|..|++++|.+.+... ..+... ..+++|.+..|.++.. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777776542 23345566778888888887763321 112222 3456666666665532 22334
Q ss_pred cCCCCCCEEEccCCcccc----cCccccc----CCCCCCEEEccCCccccc----cCccccCcCC-CCEEeccCCccccc
Q 035512 219 GNLAVLELMSLAGNNLQE----KIPPEIG----NLRNLEELNLGDNKLVGT----IPTAIFNVSK-LKALKLYSNSLLGS 285 (372)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~----~~~~~l~----~~~~L~~L~l~~~~~~~~----~~~~~~~~~~-L~~L~l~~~~~~~~ 285 (372)
.....++.++++.|.+.. ..+..+. ...++++|++..|.++.. ....+...+. +..|++..|++.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 446666677776666532 1112222 244566666666654321 1122233333 44456655555332
Q ss_pred cCCCCCcCcCcc-ccccccccCCCccccC----CCccccCCCCCCEEecCCCccc
Q 035512 286 LSSIPDFRLPNL-EVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 286 ~~~~~~~~~~~l-~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~ 335 (372)
........++.+ ..++.++++.|.+++. +...+..+++++.+.+++|++.
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~ 303 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLT 303 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccc
Confidence 111111112222 3334445555555433 2223344555555555555544
No 79
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.01 E-value=0.019 Score=46.22 Aligned_cols=81 Identities=20% Similarity=0.149 Sum_probs=35.5
Q ss_pred CCEEEccCCccccccCccccCcCCCCEEeccCCccccccC-CCCCcCcCccccccccccCCC-ccccCCCccccCCCCCC
Q 035512 248 LEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLS-SIPDFRLPNLEVLLLWDLENN-SFSGFIPNTLGNLRNLE 325 (372)
Q Consensus 248 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~l~~L~~l~l~~~-~~~~~~~~~~~~~~~L~ 325 (372)
++.++-+++.+.....+-+.+++.++.|.+.+|+..+++. ....... .+|+.|++++| .|++....++..+++|+
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~---~~L~~L~lsgC~rIT~~GL~~L~~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLA---PSLQDLDLSGCPRITDGGLACLLKLKNLR 179 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccc---cchheeeccCCCeechhHHHHHHHhhhhH
Confidence 3445555555544444444555555555555554432220 0000011 22333355544 24444344445555555
Q ss_pred EEecCC
Q 035512 326 RLNLGD 331 (372)
Q Consensus 326 ~L~l~~ 331 (372)
.|.+.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 555554
No 80
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=90.77 E-value=0.15 Score=25.60 Aligned_cols=17 Identities=29% Similarity=0.286 Sum_probs=10.4
Q ss_pred CCCCcEEeCcCCccccc
Q 035512 350 FKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 350 ~~~L~~L~l~~~~l~~~ 366 (372)
+++|++|++++|+|++.
T Consensus 1 ~~~L~~L~l~~n~i~~~ 17 (24)
T PF13516_consen 1 NPNLETLDLSNNQITDE 17 (24)
T ss_dssp -TT-SEEE-TSSBEHHH
T ss_pred CCCCCEEEccCCcCCHH
Confidence 36788888888887653
No 81
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.59 E-value=0.41 Score=24.48 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=13.2
Q ss_pred CCCCEEEccCCccccccChhhh
Q 035512 125 SSLQHLDFTFNTLSGEIPANIC 146 (372)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~ 146 (372)
++|++|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00369 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.59 E-value=0.41 Score=24.48 Aligned_cols=21 Identities=33% Similarity=0.572 Sum_probs=13.2
Q ss_pred CCCCEEEccCCccccccChhhh
Q 035512 125 SSLQHLDFTFNTLSGEIPANIC 146 (372)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~ 146 (372)
++|++|++++|.+. .+|...|
T Consensus 2 ~~L~~L~L~~N~l~-~lp~~~f 22 (26)
T smart00370 2 PNLRELDLSNNQLS-SLPPGAF 22 (26)
T ss_pred CCCCEEECCCCcCC-cCCHHHc
Confidence 45666666666666 5665554
No 83
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=87.41 E-value=0.41 Score=24.59 Aligned_cols=18 Identities=44% Similarity=0.654 Sum_probs=13.9
Q ss_pred CCCcEEeCcCCcccccCCC
Q 035512 351 KSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~~~p~ 369 (372)
++|+.|++++|+++. +|+
T Consensus 2 ~~L~~L~vs~N~Lt~-LPe 19 (26)
T smart00364 2 PSLKELNVSNNQLTS-LPE 19 (26)
T ss_pred cccceeecCCCcccc-Ccc
Confidence 467888888888885 775
No 84
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=82.13 E-value=9.1 Score=35.48 Aligned_cols=280 Identities=18% Similarity=0.080 Sum_probs=120.1
Q ss_pred CCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCcccc---CCCCCCEEEccCCccccccChhhhcC--CCC
Q 035512 77 SSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIF---NKSSLQHLDFTFNTLSGEIPANICSN--LPF 151 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~~~~~--l~~ 151 (372)
+.+++++++.|.+.+..+-.+..-.. -+.++.|..+..+...+. .-..+.+++++.+...+.++..+... -..
T Consensus 165 pr~r~~dls~npi~dkvpihl~~p~~--pl~lr~c~lsskfis~l~~qsg~~~lteldls~n~~Kddip~~~n~~a~~~v 242 (553)
T KOG4242|consen 165 PRARQHDLSPNPIGDKVPIHLPQPGN--PLSLRVCELSSKFISKLLIQSGRLWLTELDLSTNGGKDDIPRTLNKKAGTLV 242 (553)
T ss_pred chhhhhccCCCcccccCCccccCCCC--ccchhhhhhhhhHHHHhhhhhccccccccccccCCCCccchhHHHHhhhhhh
Confidence 34566666666665554433322110 034444444322111111 11346777888777766666544311 223
Q ss_pred ccEEEccCCccCc---cCCccCcCCCCCcEEEeecccCcc----ccC----cchhCCCCCCeeeccCCccccccCcc-cc
Q 035512 152 LEILSLQENMFHG---AIPSNLSNCTYLRILSLAYNDFSG----AIP----REIGNLTKLKGLYLGANRLQGEIPRE-FG 219 (372)
Q Consensus 152 L~~L~l~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~----~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~-l~ 219 (372)
++.++.+...+.- ..+...+.-+.+...+++.+.... ... ..+..-+++ +|++..+....+.+.. +-
T Consensus 243 l~~ld~s~tgirlD~l~~~l~~g~~tkl~~~kls~ng~s~skg~Egg~~~k~~fS~~~sg-hln~~~~~~psE~lks~LL 321 (553)
T KOG4242|consen 243 LFKLDRSTTGIRLDLLTSPLAAGRTTKLTFGKLSRNGTSPSKGEEGGGAEKDTFSPDPSG-HLNSRPRYTPSEKLKSMLL 321 (553)
T ss_pred hhcccccccccchhhcccccccccccccchhhhccCCCCcccccccccccccccCcCccc-ccccccccCchhhhhhhhc
Confidence 5555555443321 111222333455555555543321 111 222333445 5566555443322111 10
Q ss_pred C---CCC--CCEEEccCCcccccCcccccCC---CCCCEEEccCCccccccC--ccccCcCCCCEEeccCCcccccc--C
Q 035512 220 N---LAV--LELMSLAGNNLQEKIPPEIGNL---RNLEELNLGDNKLVGTIP--TAIFNVSKLKALKLYSNSLLGSL--S 287 (372)
Q Consensus 220 ~---~~~--L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~--~ 287 (372)
. ... =-.+++..|...+. +.+..+ ..+++|...+|...+... ..+...+..+.+++......... .
T Consensus 322 gla~ne~t~g~rldl~~cp~~~a--~vleaci~g~R~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~ 399 (553)
T KOG4242|consen 322 GLAENEATLGARLDLRRCPLERA--EVLEACIFGQRVQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSS 399 (553)
T ss_pred ccccccccccccCChhhcccccc--chhhccccceeeeEeeccccccccccccccceeeccccccccccccCCceecccc
Confidence 0 000 01223333433221 111111 347888888887754422 23445567777777654331110 0
Q ss_pred CC-CCcCc--CccccccccccCCCccccCC---CccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCC
Q 035512 288 SI-PDFRL--PNLEVLLLWDLENNSFSGFI---PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNN 361 (372)
Q Consensus 288 ~~-~~~~~--~~l~~L~~l~l~~~~~~~~~---~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 361 (372)
.+ +.... ..---+..+.++.+....-. ......-+.+.+|++++|......... ....+.....++.+..+.|
T Consensus 400 ~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~-lpkalq~n~rlr~ipds~n 478 (553)
T KOG4242|consen 400 TEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPP-LPKALQSNCRLRPIPDSLN 478 (553)
T ss_pred ccchhhhhhhcccccccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCc-CccccCCCCccCCCCCCCC
Confidence 00 00000 01111233466666654221 223445578888888888765433321 1112333345555555544
Q ss_pred c
Q 035512 362 P 362 (372)
Q Consensus 362 ~ 362 (372)
.
T Consensus 479 ~ 479 (553)
T KOG4242|consen 479 L 479 (553)
T ss_pred C
Confidence 3
No 85
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=79.81 E-value=0.048 Score=44.96 Aligned_cols=84 Identities=20% Similarity=0.186 Sum_probs=58.6
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
..+++.||++.+.+. ....-|+-+..+..|+++-|.+. ..|..+.....++.+++..|... ..|.++...+++++++
T Consensus 41 ~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e 117 (326)
T KOG0473|consen 41 FKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNE 117 (326)
T ss_pred cceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhh
Confidence 557777888777665 33444666667777788777776 56766777777777777766655 6677777778888777
Q ss_pred ccCCccc
Q 035512 132 FTFNTLS 138 (372)
Q Consensus 132 l~~~~~~ 138 (372)
.-++.+.
T Consensus 118 ~k~~~~~ 124 (326)
T KOG0473|consen 118 QKKTEFF 124 (326)
T ss_pred hccCcch
Confidence 7776643
No 86
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=79.24 E-value=1.6 Score=22.87 Aligned_cols=15 Identities=47% Similarity=0.514 Sum_probs=10.9
Q ss_pred CCCcEEeCcCCcccc
Q 035512 351 KSLTHIVLSNNPLDG 365 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~ 365 (372)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 567788888887753
No 87
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=75.33 E-value=2.7 Score=21.64 Aligned_cols=15 Identities=27% Similarity=0.390 Sum_probs=10.0
Q ss_pred CCCcEEeCcCCcccc
Q 035512 351 KSLTHIVLSNNPLDG 365 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~ 365 (372)
.+|+.|++++|.|..
T Consensus 2 ~~L~~L~L~~NkI~~ 16 (26)
T smart00365 2 TNLEELDLSQNKIKK 16 (26)
T ss_pred CccCEEECCCCccce
Confidence 466777777777654
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=74.24 E-value=27 Score=32.54 Aligned_cols=112 Identities=15% Similarity=0.047 Sum_probs=53.8
Q ss_pred CCeeeccCCccccccCcc--ccCCCCCCEEEccCCcccccC-------cccc--cCCCCCCEEEccCCccccccC---cc
Q 035512 200 LKGLYLGANRLQGEIPRE--FGNLAVLELMSLAGNNLQEKI-------PPEI--GNLRNLEELNLGDNKLVGTIP---TA 265 (372)
Q Consensus 200 L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~~~~~~~~-------~~~l--~~~~~L~~L~l~~~~~~~~~~---~~ 265 (372)
++++....|...+..... +...+..+.+.+.+.....+. +... ...--+..+.++.+....... ..
T Consensus 356 ~q~l~~rdnnldgeg~~vgk~~~s~s~r~l~agrs~~kqvm~s~~~a~~v~k~~~~~g~l~el~ls~~~lka~l~s~in~ 435 (553)
T KOG4242|consen 356 VQVLLQRDNNLDGEGGAVGKRKQSKSGRILKAGRSGDKQVMDSSTEAPPVSKKSRTHGVLAELSLSPGPLKAGLESAINK 435 (553)
T ss_pred eeEeeccccccccccccccceeeccccccccccccCCceeccccccchhhhhhhcccccccCcccCCCcccccHHHHHHh
Confidence 666777666655433222 233455566655443321110 0000 011235666677666542211 22
Q ss_pred ccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccc
Q 035512 266 IFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 311 (372)
...-+.+.+|++++|...+....+.....+.-..++.+..+.|..+
T Consensus 436 l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 436 LLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred hccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 3345678888888888755443333334444444444455555443
No 89
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=73.20 E-value=2.5 Score=21.52 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=11.9
Q ss_pred CCCCcEEeCcCCc-cc
Q 035512 350 FKSLTHIVLSNNP-LD 364 (372)
Q Consensus 350 ~~~L~~L~l~~~~-l~ 364 (372)
+++|++|++++|+ ++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 4788999999986 54
No 90
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=67.48 E-value=0.046 Score=45.08 Aligned_cols=88 Identities=19% Similarity=0.200 Sum_probs=55.1
Q ss_pred cccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCC
Q 035512 72 QLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPF 151 (372)
Q Consensus 72 ~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 151 (372)
.++..+..+.|+++.|... .+-..|+.+..|..|+++.+.+. ..|+.+.....++.++...|... ..|.... ..+.
T Consensus 37 ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~-k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK-KEPH 112 (326)
T ss_pred hhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc-ccCC
Confidence 4556677778888877654 33344555666777777777665 56666666666666666666655 4554443 5666
Q ss_pred ccEEEccCCccC
Q 035512 152 LEILSLQENMFH 163 (372)
Q Consensus 152 L~~L~l~~~~~~ 163 (372)
++++++..+.+.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 666666655543
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=60.56 E-value=4.7 Score=37.98 Aligned_cols=82 Identities=27% Similarity=0.201 Sum_probs=47.3
Q ss_pred CCCCCCEEECCCCcCCCC--CChhhhCCCCCCEEEcccccccCCCCcccc--CCCCCCEEEccCCccccccC------hh
Q 035512 75 NLSSLQSLNLSFNRLSGS--IPSAIFTTYTLKYVNLRQNQLSGALPSFIF--NKSSLQHLDFTFNTLSGEIP------AN 144 (372)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~------~~ 144 (372)
+.+.+..++|++|++... +...-...|.|++|+|++|.........+. +...|++|-+.+|++...+. ..
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~tf~~~s~yv~~ 295 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTTFSDRSEYVSA 295 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccchhhhHHHHHH
Confidence 457778888888876532 122223567888888888822211112222 34567888888887753221 22
Q ss_pred hhcCCCCccEEE
Q 035512 145 ICSNLPFLEILS 156 (372)
Q Consensus 145 ~~~~l~~L~~L~ 156 (372)
+.+.+|+|..|+
T Consensus 296 i~~~FPKL~~LD 307 (585)
T KOG3763|consen 296 IRELFPKLLRLD 307 (585)
T ss_pred HHHhcchheeec
Confidence 333567776665
No 92
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=44.75 E-value=11 Score=35.69 Aligned_cols=13 Identities=31% Similarity=0.406 Sum_probs=7.1
Q ss_pred CCCCCCEEEccCC
Q 035512 244 NLRNLEELNLGDN 256 (372)
Q Consensus 244 ~~~~L~~L~l~~~ 256 (372)
..|+|..|+|++|
T Consensus 242 ~apklk~L~LS~N 254 (585)
T KOG3763|consen 242 IAPKLKTLDLSHN 254 (585)
T ss_pred hcchhheeecccc
Confidence 3455555555555
No 93
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=29.23 E-value=56 Score=24.12 Aligned_cols=34 Identities=24% Similarity=0.233 Sum_probs=28.2
Q ss_pred CCCCCCCChhHHHHHHHHHHh--ccCCCCccccCCCC
Q 035512 1 ATANTSTITTDRDALLALKAH--ITHDPTNFFAKNWN 35 (372)
Q Consensus 1 ~~~~~~~~~~~~~~l~~~~~~--~~~~~~~~~~~~~~ 35 (372)
||++.-+++.+.-+|.+.+++ .++||+.... .+.
T Consensus 28 ap~~s~~t~~~vAaLFdrWN~~L~TGdP~kV~a-nyA 63 (156)
T COG4875 28 APLISNVTEREVAALFDRWNAALTTGDPNKVAA-NYA 63 (156)
T ss_pred CccccCccHHHHHHHHHHHHhhhhcCChHHHHh-hcC
Confidence 677778888999999999998 7799998887 543
Done!