Query 035512
Match_columns 372
No_of_seqs 215 out of 3528
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:17:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035512.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035512hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 3.4E-42 1.2E-46 340.3 24.6 351 2-371 4-388 (768)
2 4eco_A Uncharacterized protein 100.0 3.6E-40 1.2E-44 318.9 21.8 268 8-283 28-415 (636)
3 1ogq_A PGIP-2, polygalacturona 100.0 1.6E-38 5.6E-43 281.3 26.5 293 6-309 2-302 (313)
4 4ecn_A Leucine-rich repeat pro 100.0 2.5E-38 8.7E-43 311.6 23.0 273 5-286 264-660 (876)
5 3rgz_A Protein brassinosteroid 100.0 2E-37 7E-42 306.1 24.7 231 53-284 294-552 (768)
6 3v47_A TOLL-like receptor 5B a 100.0 2.3E-37 8E-42 288.6 23.5 309 52-369 29-413 (455)
7 2id5_A Lingo-1, leucine rich r 100.0 5E-36 1.7E-40 281.2 26.0 304 52-365 31-334 (477)
8 2id5_A Lingo-1, leucine rich r 100.0 8.2E-35 2.8E-39 272.9 24.0 303 56-371 14-316 (477)
9 3t6q_A CD180 antigen; protein- 100.0 3.5E-34 1.2E-38 276.5 29.0 311 52-371 32-445 (606)
10 3t6q_A CD180 antigen; protein- 100.0 2.5E-34 8.6E-39 277.6 25.4 302 54-366 255-562 (606)
11 3vq2_A TLR4, TOLL-like recepto 100.0 1.8E-33 6.3E-38 271.5 26.3 110 53-163 56-166 (606)
12 3v47_A TOLL-like receptor 5B a 100.0 6E-34 2.1E-38 265.5 22.0 301 57-371 14-391 (455)
13 3o6n_A APL1; leucine-rich repe 100.0 1.4E-33 4.7E-38 257.8 23.7 290 53-365 45-353 (390)
14 3vq2_A TLR4, TOLL-like recepto 100.0 2.6E-33 8.8E-38 270.5 26.3 145 216-369 393-538 (606)
15 4eco_A Uncharacterized protein 100.0 3.2E-34 1.1E-38 277.3 19.8 304 52-371 248-585 (636)
16 3j0a_A TOLL-like receptor 5; m 100.0 6.4E-33 2.2E-37 276.7 25.8 315 40-365 13-376 (844)
17 2z63_A TOLL-like receptor 4, v 100.0 8.5E-33 2.9E-37 265.0 25.7 111 52-163 51-162 (570)
18 3oja_B Anopheles plasmodium-re 100.0 7.2E-33 2.5E-37 266.3 25.2 318 24-365 3-359 (597)
19 1ziw_A TOLL-like receptor 3; i 100.0 3.2E-32 1.1E-36 266.2 29.2 281 52-333 24-364 (680)
20 4fcg_A Uncharacterized protein 100.0 3E-33 1E-37 249.0 17.4 272 5-282 22-313 (328)
21 1ziw_A TOLL-like receptor 3; i 100.0 8.4E-32 2.9E-36 263.3 29.2 308 55-368 250-601 (680)
22 2z63_A TOLL-like receptor 4, v 100.0 6.4E-32 2.2E-36 258.9 26.7 308 52-369 75-536 (570)
23 2z7x_B TOLL-like receptor 1, v 100.0 2.2E-32 7.6E-37 259.2 22.8 61 299-365 422-482 (520)
24 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 5.4E-32 1.8E-36 258.7 25.6 128 52-186 51-181 (562)
25 2z81_A CD282 antigen, TOLL-lik 100.0 3E-32 1E-36 260.0 22.9 119 53-171 50-169 (549)
26 4ecn_A Leucine-rich repeat pro 100.0 2.8E-32 9.7E-37 268.7 22.2 302 52-371 490-825 (876)
27 4fmz_A Internalin; leucine ric 100.0 2.1E-31 7.2E-36 239.5 25.4 282 52-364 65-346 (347)
28 1xku_A Decorin; proteoglycan, 100.0 5E-31 1.7E-35 235.3 26.6 289 54-362 32-330 (330)
29 4fmz_A Internalin; leucine ric 100.0 2.8E-31 9.6E-36 238.7 24.6 286 52-368 43-328 (347)
30 2z7x_B TOLL-like receptor 1, v 100.0 2.5E-31 8.6E-36 251.9 25.0 140 219-370 321-462 (520)
31 2ft3_A Biglycan; proteoglycan, 100.0 2.5E-31 8.5E-36 237.5 23.0 288 54-362 34-331 (332)
32 3j0a_A TOLL-like receptor 5; m 100.0 3.7E-31 1.3E-35 264.0 25.8 301 51-365 46-395 (844)
33 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 8.8E-31 3E-35 250.4 26.1 146 55-210 33-181 (562)
34 4g8a_A TOLL-like receptor 4; l 100.0 1.4E-30 4.7E-35 252.7 27.3 136 52-188 51-187 (635)
35 1xku_A Decorin; proteoglycan, 100.0 6.7E-30 2.3E-34 228.0 28.2 283 39-333 29-330 (330)
36 1ogq_A PGIP-2, polygalacturona 100.0 4.5E-31 1.5E-35 233.5 17.3 253 77-365 50-306 (313)
37 1o6v_A Internalin A; bacterial 100.0 7.3E-30 2.5E-34 238.4 26.2 284 52-365 67-389 (466)
38 2ft3_A Biglycan; proteoglycan, 100.0 5.1E-30 1.7E-34 229.0 24.1 283 38-333 30-331 (332)
39 1o6v_A Internalin A; bacterial 100.0 1.9E-29 6.4E-34 235.6 27.1 297 51-372 88-430 (466)
40 2z81_A CD282 antigen, TOLL-lik 100.0 5.1E-30 1.7E-34 244.6 19.9 184 53-236 26-210 (549)
41 3o6n_A APL1; leucine-rich repe 100.0 1.7E-29 5.8E-34 230.7 22.1 314 30-366 3-333 (390)
42 2z80_A TOLL-like receptor 2, v 100.0 6.9E-30 2.4E-34 230.1 17.0 290 33-366 22-316 (353)
43 3bz5_A Internalin-J, INLJ; leu 100.0 6.4E-28 2.2E-32 223.8 27.2 276 52-365 41-353 (457)
44 3oja_B Anopheles plasmodium-re 100.0 8.8E-29 3E-33 237.9 21.9 273 75-367 49-340 (597)
45 4g8a_A TOLL-like receptor 4; l 100.0 7E-28 2.4E-32 233.6 28.3 112 52-163 75-186 (635)
46 2z66_A Variable lymphocyte rec 100.0 1.1E-28 3.8E-33 217.8 18.4 242 39-282 5-260 (306)
47 3bz5_A Internalin-J, INLJ; leu 100.0 4.3E-27 1.5E-31 218.3 27.8 292 52-371 63-394 (457)
48 1ozn_A Reticulon 4 receptor; N 100.0 2.7E-28 9.1E-33 213.1 17.7 226 55-284 13-239 (285)
49 2z66_A Variable lymphocyte rec 100.0 3.7E-28 1.3E-32 214.4 16.8 249 56-336 10-262 (306)
50 3zyi_A Leucine-rich repeat-con 100.0 5.1E-27 1.7E-31 218.3 24.3 228 53-283 75-303 (452)
51 3zyj_A Leucine-rich repeat-con 100.0 8E-27 2.7E-31 216.2 24.0 228 53-283 64-292 (440)
52 3zyi_A Leucine-rich repeat-con 100.0 1.3E-26 4.5E-31 215.5 24.5 247 55-311 56-303 (452)
53 3zyj_A Leucine-rich repeat-con 100.0 2.5E-26 8.5E-31 212.9 24.8 248 54-311 44-292 (440)
54 2z80_A TOLL-like receptor 2, v 99.9 2.4E-27 8.1E-32 213.5 14.2 257 52-313 51-316 (353)
55 3g06_A SSPH2 (leucine-rich rep 99.9 9.1E-27 3.1E-31 222.5 18.6 287 28-369 10-302 (622)
56 1ozn_A Reticulon 4 receptor; N 99.9 5.9E-26 2E-30 198.2 19.8 228 104-339 14-242 (285)
57 4fcg_A Uncharacterized protein 99.9 8.7E-26 3E-30 200.8 20.6 236 75-335 79-314 (328)
58 1jl5_A Outer protein YOPM; leu 99.9 5.8E-25 2E-29 203.8 26.3 273 53-371 111-418 (454)
59 2o6q_A Variable lymphocyte rec 99.9 2.3E-25 7.8E-30 192.8 21.0 216 38-282 2-217 (270)
60 1z7x_W Ribonuclease inhibitor; 99.9 2.3E-29 7.9E-34 234.9 -5.8 308 53-365 28-412 (461)
61 1wwl_A Monocyte differentiatio 99.9 6.4E-28 2.2E-32 213.3 3.6 203 149-365 94-310 (312)
62 1z7x_W Ribonuclease inhibitor; 99.9 3.7E-29 1.3E-33 233.5 -5.0 311 54-365 86-441 (461)
63 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-27 7.6E-32 210.3 6.7 262 53-333 10-273 (317)
64 1wwl_A Monocyte differentiatio 99.9 5.1E-27 1.8E-31 207.5 6.0 248 75-336 41-310 (312)
65 3o53_A Protein LRIM1, AGAP0063 99.9 2.1E-27 7E-32 210.5 3.0 260 79-362 12-273 (317)
66 1jl5_A Outer protein YOPM; leu 99.9 5.4E-25 1.9E-29 204.0 18.2 280 54-370 12-335 (454)
67 2z62_A TOLL-like receptor 4, v 99.9 8.4E-24 2.9E-28 183.6 20.6 222 58-284 12-238 (276)
68 3oja_A Leucine-rich immune mol 99.9 3.3E-25 1.1E-29 207.4 10.3 234 78-330 35-270 (487)
69 2z62_A TOLL-like receptor 4, v 99.9 1.1E-23 3.9E-28 182.8 19.1 225 106-339 12-241 (276)
70 2o6q_A Variable lymphocyte rec 99.9 4.7E-23 1.6E-27 178.2 22.3 203 78-312 17-219 (270)
71 3oja_A Leucine-rich immune mol 99.9 1.4E-23 4.9E-28 196.3 15.6 237 52-306 33-270 (487)
72 2ast_B S-phase kinase-associat 99.9 5.9E-25 2E-29 196.5 5.3 266 39-319 35-314 (336)
73 3rfs_A Internalin B, repeat mo 99.9 3.5E-23 1.2E-27 179.2 15.6 205 122-371 38-242 (272)
74 3g06_A SSPH2 (leucine-rich rep 99.9 1.4E-21 4.8E-26 186.7 26.0 243 52-340 60-302 (622)
75 1p9a_G Platelet glycoprotein I 99.9 4.4E-22 1.5E-26 173.7 20.0 198 53-282 10-207 (290)
76 1p9a_G Platelet glycoprotein I 99.9 6.4E-22 2.2E-26 172.7 20.8 204 121-336 6-209 (290)
77 3rfs_A Internalin B, repeat mo 99.9 2.4E-22 8.3E-27 173.9 16.8 200 74-285 38-237 (272)
78 3m19_A Variable lymphocyte rec 99.9 4.1E-22 1.4E-26 170.4 17.3 189 38-233 2-190 (251)
79 3goz_A Leucine-rich repeat-con 99.9 2.6E-24 9E-29 194.1 1.9 258 81-338 2-300 (362)
80 2xwt_C Thyrotropin receptor; s 99.9 6.1E-22 2.1E-26 168.1 15.3 197 77-280 31-236 (239)
81 3goz_A Leucine-rich repeat-con 99.9 1E-23 3.6E-28 190.2 4.3 256 58-313 3-299 (362)
82 2ast_B S-phase kinase-associat 99.9 4.4E-23 1.5E-27 184.3 6.9 252 77-340 47-311 (336)
83 2ca6_A RAN GTPase-activating p 99.9 3E-24 1E-28 195.5 -1.0 141 198-338 159-319 (386)
84 2xwt_C Thyrotropin receptor; s 99.9 1.7E-21 5.9E-26 165.3 15.9 197 151-362 32-237 (239)
85 3m19_A Variable lymphocyte rec 99.9 9.7E-21 3.3E-25 161.9 18.5 184 150-340 14-197 (251)
86 4glp_A Monocyte differentiatio 99.9 1.9E-21 6.6E-26 171.6 14.5 230 77-336 64-308 (310)
87 2ca6_A RAN GTPase-activating p 99.9 7.4E-23 2.5E-27 186.4 3.9 230 53-282 32-315 (386)
88 1h6u_A Internalin H; cell adhe 99.9 7.9E-21 2.7E-25 167.3 16.3 188 54-282 42-229 (308)
89 1h6u_A Internalin H; cell adhe 99.9 6.5E-21 2.2E-25 167.9 15.3 198 121-339 37-234 (308)
90 4glp_A Monocyte differentiatio 99.9 2.6E-21 8.8E-26 170.8 11.8 229 126-365 65-308 (310)
91 3ogk_B Coronatine-insensitive 99.8 4.1E-23 1.4E-27 198.6 -1.3 306 52-366 163-528 (592)
92 4ay9_X Follicle-stimulating ho 99.8 5.5E-20 1.9E-24 165.0 18.5 200 57-261 13-217 (350)
93 3ogk_B Coronatine-insensitive 99.8 5.7E-23 1.9E-27 197.6 -1.6 302 54-365 139-502 (592)
94 2p1m_B Transport inhibitor res 99.8 8.4E-23 2.9E-27 196.5 -2.7 109 52-160 104-221 (594)
95 4ay9_X Follicle-stimulating ho 99.8 4.3E-19 1.5E-23 159.2 19.5 241 80-332 12-256 (350)
96 2o6s_A Variable lymphocyte rec 99.8 1.3E-19 4.6E-24 150.2 14.7 159 78-244 29-187 (208)
97 2o6s_A Variable lymphocyte rec 99.8 2.5E-19 8.6E-24 148.6 13.1 174 153-340 10-183 (208)
98 2p1m_B Transport inhibitor res 99.8 1.3E-21 4.3E-26 188.3 -4.5 302 52-364 129-519 (594)
99 3cvr_A Invasion plasmid antige 99.8 5E-19 1.7E-23 167.2 12.9 206 33-269 35-253 (571)
100 2v9t_B SLIT homolog 2 protein 99.8 6.1E-18 2.1E-22 141.3 15.9 134 198-335 32-165 (220)
101 1h6t_A Internalin B; cell adhe 99.8 3.3E-18 1.1E-22 149.2 13.2 170 74-258 43-212 (291)
102 3e6j_A Variable lymphocyte rec 99.8 1.2E-17 4.1E-22 140.4 15.8 162 33-211 11-172 (229)
103 2v9t_B SLIT homolog 2 protein 99.8 9.8E-18 3.3E-22 140.0 14.7 151 57-211 15-165 (220)
104 1h6t_A Internalin B; cell adhe 99.8 1.4E-17 4.7E-22 145.3 14.6 188 79-283 26-213 (291)
105 1m9s_A Internalin B; cell inva 99.7 1.5E-17 5.1E-22 158.7 15.8 166 54-234 44-209 (605)
106 3cvr_A Invasion plasmid antige 99.7 1.6E-17 5.3E-22 157.0 15.6 182 126-340 60-248 (571)
107 2v70_A SLIT-2, SLIT homolog 2 99.7 2.4E-17 8.2E-22 137.7 15.1 154 177-337 14-168 (220)
108 3sb4_A Hypothetical leucine ri 99.7 9.8E-19 3.3E-23 155.5 6.3 222 124-358 100-328 (329)
109 1m9s_A Internalin B; cell inva 99.7 4.2E-17 1.4E-21 155.6 16.3 185 58-259 26-210 (605)
110 3e6j_A Variable lymphocyte rec 99.7 8.1E-17 2.8E-21 135.4 16.0 153 79-236 21-173 (229)
111 2xot_A Amphoterin-induced prot 99.7 3.2E-17 1.1E-21 147.6 13.7 176 80-259 21-202 (361)
112 2xot_A Amphoterin-induced prot 99.7 3.9E-17 1.3E-21 147.0 13.6 176 56-235 21-202 (361)
113 2v70_A SLIT-2, SLIT homolog 2 99.7 1.1E-16 3.8E-21 133.6 15.3 111 148-258 55-165 (220)
114 3sb4_A Hypothetical leucine ri 99.7 2.5E-17 8.7E-22 146.4 10.5 228 94-329 86-328 (329)
115 4fdw_A Leucine rich hypothetic 99.7 1.5E-15 5.1E-20 138.0 21.3 267 74-363 110-382 (401)
116 4ezg_A Putative uncharacterize 99.7 1.3E-16 4.4E-21 130.9 12.9 150 124-282 43-193 (197)
117 4fdw_A Leucine rich hypothetic 99.7 2.9E-15 9.8E-20 136.1 22.4 253 65-334 124-382 (401)
118 4ezg_A Putative uncharacterize 99.7 1.1E-16 3.9E-21 131.2 11.9 153 173-365 43-195 (197)
119 1xeu_A Internalin C; cellular 99.7 1.7E-16 5.9E-21 136.2 9.6 172 149-339 18-189 (263)
120 1xeu_A Internalin C; cellular 99.7 3.7E-16 1.3E-20 134.1 11.5 164 57-260 23-186 (263)
121 1dce_A Protein (RAB geranylger 99.7 4.5E-19 1.5E-23 168.2 -8.6 213 122-358 346-567 (567)
122 4b8c_D Glucose-repressible alc 99.7 1.8E-17 6.3E-22 161.9 2.2 235 6-256 128-369 (727)
123 1dce_A Protein (RAB geranylger 99.6 3.5E-18 1.2E-22 162.1 -6.7 186 74-283 346-546 (567)
124 2ell_A Acidic leucine-rich nuc 99.6 3.4E-15 1.2E-19 119.1 9.7 139 223-370 25-165 (168)
125 1w8a_A SLIT protein; signaling 99.6 1.2E-14 4.2E-19 118.5 12.9 132 201-339 11-143 (192)
126 1w8a_A SLIT protein; signaling 99.6 1.3E-14 4.6E-19 118.3 12.3 128 56-187 11-139 (192)
127 2o6r_A Variable lymphocyte rec 99.6 2.6E-14 8.8E-19 115.0 13.2 130 201-337 10-139 (177)
128 2ell_A Acidic leucine-rich nuc 99.6 1.1E-14 3.7E-19 116.2 10.9 131 150-282 24-159 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 2.5E-15 8.7E-20 117.3 6.9 126 78-206 18-148 (149)
130 2wfh_A SLIT homolog 2 protein 99.6 4.1E-14 1.4E-18 115.4 14.0 128 201-336 13-140 (193)
131 2wfh_A SLIT homolog 2 protein 99.6 5.3E-14 1.8E-18 114.7 13.9 127 56-187 13-139 (193)
132 2o6r_A Variable lymphocyte rec 99.5 1.1E-13 3.9E-18 111.2 14.2 128 57-188 11-138 (177)
133 2je0_A Acidic leucine-rich nuc 99.5 1.3E-14 4.3E-19 113.3 8.2 127 150-278 17-148 (149)
134 4b8c_D Glucose-repressible alc 99.5 4.5E-15 1.5E-19 145.1 5.4 152 59-216 207-359 (727)
135 4fs7_A Uncharacterized protein 99.5 2.3E-12 7.9E-17 117.2 22.1 129 217-361 248-376 (394)
136 1a9n_A U2A', U2A'; complex (nu 99.5 1.2E-13 4.2E-18 110.9 9.8 132 73-210 15-152 (176)
137 4gt6_A Cell surface protein; l 99.5 1.1E-11 3.8E-16 112.7 21.5 144 55-205 66-212 (394)
138 1a9n_A U2A', U2A'; complex (nu 99.4 1.7E-13 5.7E-18 110.1 7.9 58 223-282 43-100 (176)
139 4gt6_A Cell surface protein; l 99.4 1.5E-11 5.1E-16 111.9 21.3 278 65-362 51-368 (394)
140 4fs7_A Uncharacterized protein 99.4 9.6E-12 3.3E-16 113.1 19.3 281 52-356 70-393 (394)
141 1ds9_A Outer arm dynein; leuci 99.4 1.8E-15 6E-20 124.2 -5.8 160 195-365 15-186 (198)
142 3g39_A Variable lymphocyte rec 99.4 5.6E-12 1.9E-16 100.5 11.8 109 224-339 11-119 (170)
143 3g39_A Variable lymphocyte rec 99.4 5.1E-12 1.7E-16 100.7 11.4 104 56-163 12-115 (170)
144 1ds9_A Outer arm dynein; leuci 99.4 9.6E-15 3.3E-19 119.8 -5.1 109 96-210 43-152 (198)
145 2r9u_A Variable lymphocyte rec 99.3 1.2E-11 4.1E-16 98.9 11.7 104 56-163 15-118 (174)
146 2r9u_A Variable lymphocyte rec 99.3 1.7E-11 5.9E-16 97.9 11.8 104 80-187 15-118 (174)
147 3un9_A NLR family member X1; l 99.3 8.7E-14 3E-18 125.1 -3.3 136 125-260 101-253 (372)
148 4h09_A Hypothetical leucine ri 99.3 9.7E-10 3.3E-14 99.3 23.3 262 53-331 46-319 (379)
149 3un9_A NLR family member X1; l 99.2 4.3E-14 1.5E-18 127.1 -8.0 191 173-365 71-284 (372)
150 4h09_A Hypothetical leucine ri 99.1 2.8E-08 9.5E-13 89.7 22.5 263 53-332 69-343 (379)
151 2ifg_A High affinity nerve gro 99.1 4.8E-10 1.6E-14 100.1 10.2 101 59-163 14-116 (347)
152 2ifg_A High affinity nerve gro 99.0 5.4E-10 1.8E-14 99.8 9.4 105 226-337 12-118 (347)
153 2ra8_A Uncharacterized protein 98.9 3.1E-10 1E-14 101.2 1.9 183 150-336 107-321 (362)
154 2ra8_A Uncharacterized protein 98.8 4.3E-09 1.5E-13 93.8 7.5 206 52-281 106-341 (362)
155 1io0_A Tropomodulin; LRR prote 98.6 9.1E-10 3.1E-14 88.8 -4.1 123 217-364 31-164 (185)
156 1io0_A Tropomodulin; LRR prote 98.5 8.1E-09 2.8E-13 83.2 -1.5 95 190-284 28-137 (185)
157 3e4g_A ATP synthase subunit S, 98.4 5.4E-08 1.9E-12 76.5 2.0 83 54-136 62-150 (176)
158 3e4g_A ATP synthase subunit S, 98.2 5.9E-07 2E-11 70.6 3.3 34 247-280 115-149 (176)
159 3rw6_A Nuclear RNA export fact 98.2 2.4E-06 8.2E-11 72.3 6.4 83 98-181 167-258 (267)
160 3rw6_A Nuclear RNA export fact 97.9 8.3E-06 2.8E-10 69.0 4.6 98 58-157 148-258 (267)
161 1pgv_A TMD-1, tropomodulin TMD 97.7 3.5E-06 1.2E-10 67.4 -1.1 64 219-282 38-110 (197)
162 1pgv_A TMD-1, tropomodulin TMD 97.4 1.7E-05 5.7E-10 63.5 -1.0 66 266-331 66-135 (197)
163 3rfe_A Platelet glycoprotein I 96.6 0.0043 1.5E-07 46.1 6.2 55 274-335 12-68 (130)
164 3rfe_A Platelet glycoprotein I 95.9 0.014 4.8E-07 43.3 5.7 57 249-311 11-68 (130)
165 2lz0_A Uncharacterized protein 81.9 1.7 6E-05 30.1 4.1 44 235-279 9-52 (100)
166 2lz0_A Uncharacterized protein 74.8 10 0.00034 26.1 6.3 48 63-111 6-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3.4e-42 Score=340.26 Aligned_cols=351 Identities=28% Similarity=0.459 Sum_probs=227.8
Q ss_pred CCCCCCChhHHHHHHHHHHhccCCCCccccCCCCCCCCCCcccceeecCCCCcEEEEEeCCCCcccc---ccc-------
Q 035512 2 TANTSTITTDRDALLALKAHITHDPTNFFAKNWNTNISFCNWTGVACDVHRHRVTVLNISGLNLTGT---IPS------- 71 (372)
Q Consensus 2 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~---~~~------- 71 (372)
+|.++..++|+.||++||..+. ||. .++ +|....+||.|.|+.|. .++++.|+++++.+.+. ++.
T Consensus 4 ~~~~~~~~~~~~all~~k~~~~-~~~-~l~-~W~~~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~ 78 (768)
T 3rgz_A 4 ASPSQSLYREIHQLISFKDVLP-DKN-LLP-DWSSNKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTG 78 (768)
T ss_dssp ----CCHHHHHHHHHHHHTTCS-CTT-SST-TCCTTSCGGGSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTT
T ss_pred CccccCCHHHHHHHHHHHhhCC-Ccc-ccc-CCCCCCCCcCCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCc
Confidence 3445557889999999999995 888 898 99988899999999998 67999999999998876 444
Q ss_pred ----------------cccCCCCCCEEECCCCcCCCCCCh--hhhCCCCCCEEEcccccccCCCCccc-cCCCCCCEEEc
Q 035512 72 ----------------QLGNLSSLQSLNLSFNRLSGSIPS--AIFTTYTLKYVNLRQNQLSGALPSFI-FNKSSLQHLDF 132 (372)
Q Consensus 72 ----------------~~~~l~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~~~~~~~~~l-~~l~~L~~L~l 132 (372)
.+..+++|++|++++|.+.+.+|. .+.++++|++|++++|.+.+..+..+ .++++|++|++
T Consensus 79 L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L 158 (768)
T 3rgz_A 79 LESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL 158 (768)
T ss_dssp CCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEEC
T ss_pred ccccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEEC
Confidence 455556666666666666555555 56666666666666666555444433 45666666666
Q ss_pred cCCccccccChhh--hcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcc
Q 035512 133 TFNTLSGEIPANI--CSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 133 ~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 210 (372)
++|.+.+..+... +..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+..+. +..+++|++|++++|.+
T Consensus 159 s~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l 235 (768)
T 3rgz_A 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKL 235 (768)
T ss_dssp CSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCC
T ss_pred CCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcC
Confidence 6666654333331 3456666666666666554332 25566666666666666554444 66666666676666666
Q ss_pred ccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCc-CCCCEEeccCCccccccCCC
Q 035512 211 QGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNV-SKLKALKLYSNSLLGSLSSI 289 (372)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~ 289 (372)
.+..+..+..+++|++|++++|.+....|.. .+++|++|++++|.+++..|..+.+. ++|++|++++|.+.+ .
T Consensus 236 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~----~ 309 (768)
T 3rgz_A 236 SGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG----A 309 (768)
T ss_dssp CSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEE----C
T ss_pred CCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCC----c
Confidence 6555666666666777777666665544433 55666777777776665666655553 677777777776632 2
Q ss_pred CCcCcCccccccccccCCCccccCCCcc-ccCCCCCCEEecCCCccccCCCCCcccccccCCC-CCcEEeCcCCcccccC
Q 035512 290 PDFRLPNLEVLLLWDLENNSFSGFIPNT-LGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFK-SLTHIVLSNNPLDGIL 367 (372)
Q Consensus 290 ~~~~~~~l~~L~~l~l~~~~~~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l~~~~ 367 (372)
....+..++.|+.|++++|.+.+.+|.. +..+++|++|++++|.+.+..+. .+..++ +|+.|++++|++++.+
T Consensus 310 ~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~-----~l~~l~~~L~~L~Ls~N~l~~~~ 384 (768)
T 3rgz_A 310 VPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE-----SLTNLSASLLTLDLSSNNFSGPI 384 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCT-----THHHHTTTCSEEECCSSEEEEEC
T ss_pred cchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccH-----HHHhhhcCCcEEEccCCCcCCCc
Confidence 2233455666666677777776555543 66677777777777776655554 355555 7777777777777666
Q ss_pred CCCC
Q 035512 368 PKTF 371 (372)
Q Consensus 368 p~~~ 371 (372)
|..+
T Consensus 385 ~~~~ 388 (768)
T 3rgz_A 385 LPNL 388 (768)
T ss_dssp CTTT
T ss_pred Chhh
Confidence 6554
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.6e-40 Score=318.92 Aligned_cols=268 Identities=22% Similarity=0.354 Sum_probs=216.7
Q ss_pred ChhHHHHHHHHHHhccCCCCccccC-------CCCCCCCCCcc---cceeecCCCCcEEEEEeCCCCccccccccccCCC
Q 035512 8 ITTDRDALLALKAHITHDPTNFFAK-------NWNTNISFCNW---TGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLS 77 (372)
Q Consensus 8 ~~~~~~~l~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~---~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~ 77 (372)
...|+.||.++++++.+ +.+.... +|....++|.| .|+.|... .+++.|+++++.+.|.+|..++.++
T Consensus 28 ~~~d~~aL~~~~~~~~~-~~w~~~~~~~~~~~~W~~~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~~L~ 105 (636)
T 4eco_A 28 YIKDYLALKEIWDALNG-KNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIGQLT 105 (636)
T ss_dssp HHHHHHHHHHHHHHTTG-GGCCCCC------CCCCCSSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGGGCT
T ss_pred HHHHHHHHHHHHHHcCC-CCcccCCcCCccCCCCCCCCCcccccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHhcCc
Confidence 34699999999999844 4444332 79999999999 99999753 7999999999999999999999999
Q ss_pred CCCEEECCCCcC--------------------------------------------------------------------
Q 035512 78 SLQSLNLSFNRL-------------------------------------------------------------------- 89 (372)
Q Consensus 78 ~L~~L~l~~~~~-------------------------------------------------------------------- 89 (372)
+|++|++++|.+
T Consensus 106 ~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~l~~ 185 (636)
T 4eco_A 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185 (636)
T ss_dssp TCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCCCCCCT
T ss_pred cceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCccccccccccccchhh
Confidence 999999998843
Q ss_pred ----------CCCCChhhhCCCCCCEEEcccccccCC-----------------CCcccc--CCCCCCEEEccCCccccc
Q 035512 90 ----------SGSIPSAIFTTYTLKYVNLRQNQLSGA-----------------LPSFIF--NKSSLQHLDFTFNTLSGE 140 (372)
Q Consensus 90 ----------~~~~~~~~~~l~~L~~L~l~~~~~~~~-----------------~~~~l~--~l~~L~~L~l~~~~~~~~ 140 (372)
++ +|..++++++|++|++++|.+++. .|..+. ++++|++|++++|.+.+.
T Consensus 186 l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~ 264 (636)
T 4eco_A 186 TQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264 (636)
T ss_dssp TTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSS
T ss_pred hhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCcc
Confidence 23 677788999999999999999874 888888 999999999999998888
Q ss_pred cChhhhcCCCCccEEEccCCc-cCc-cCCccCcCC------CCCcEEEeecccCccccCc--chhCCCCCCeeeccCCcc
Q 035512 141 IPANICSNLPFLEILSLQENM-FHG-AIPSNLSNC------TYLRILSLAYNDFSGAIPR--EIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 141 ~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~~l------~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~ 210 (372)
+|..+. .+++|++|++++|. +.+ ..|..+..+ ++|++|++++|.++ ..|. .+..+++|+.|++++|.+
T Consensus 265 ~p~~l~-~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l 342 (636)
T 4eco_A 265 LPTFLK-ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQL 342 (636)
T ss_dssp CCTTTT-TCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCC
T ss_pred ChHHHh-cCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcC
Confidence 887665 79999999999998 776 566666655 88888999888887 6666 788888888888888888
Q ss_pred ccccCccccCCCCCCEEEccCCcccccCcccccCCCC-CCEEEccCCccccccCccccCcC--CCCEEeccCCccc
Q 035512 211 QGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRN-LEELNLGDNKLVGTIPTAIFNVS--KLKALKLYSNSLL 283 (372)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~~~~ 283 (372)
.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+ +|++|++++|.+.
T Consensus 343 ~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~ 415 (636)
T 4eco_A 343 EGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIG 415 (636)
T ss_dssp EEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTT
T ss_pred ccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCC
Confidence 86777 7777778888888888776 45666777777 777777777776 5565555443 6777777777664
No 3
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.6e-38 Score=281.30 Aligned_cols=293 Identities=33% Similarity=0.558 Sum_probs=249.4
Q ss_pred CCChhHHHHHHHHHHhccCCCCccccCCCCCCCCCCc--ccceeecCCC--CcEEEEEeCCCCccc--cccccccCCCCC
Q 035512 6 STITTDRDALLALKAHITHDPTNFFAKNWNTNISFCN--WTGVACDVHR--HRVTVLNISGLNLTG--TIPSQLGNLSSL 79 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~~l~~l~l~~~~l~~--~~~~~~~~l~~L 79 (372)
.+.++|+.||++||..+ .||. .+. +|....++|. |.|+.|.... .+++.|+++++.+++ .+|..+..+++|
T Consensus 2 ~c~~~~~~aL~~~k~~~-~~~~-~l~-~W~~~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L 78 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDL-GNPT-TLS-SWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYL 78 (313)
T ss_dssp CSCHHHHHHHHHHHHHT-TCCG-GGT-TCCTTSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTC
T ss_pred CCCHHHHHHHHHHHHhc-CCcc-ccc-CCCCCCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCC
Confidence 46789999999999999 6776 787 9988889999 9999997543 799999999999998 889999999999
Q ss_pred CEEECCC-CcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEcc
Q 035512 80 QSLNLSF-NRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQ 158 (372)
Q Consensus 80 ~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (372)
++|++++ |.+.+.+|..+.++++|++|++++|.+++..|..+..+++|++|++++|.+.+.+|..+. .+++|++|+++
T Consensus 79 ~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-~l~~L~~L~L~ 157 (313)
T 1ogq_A 79 NFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSIS-SLPNLVGITFD 157 (313)
T ss_dssp SEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGG-GCTTCCEEECC
T ss_pred CeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHh-cCCCCCeEECc
Confidence 9999995 888888999999999999999999999988899999999999999999999877776665 79999999999
Q ss_pred CCccCccCCccCcCCC-CCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCccccc
Q 035512 159 ENMFHGAIPSNLSNCT-YLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEK 237 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 237 (372)
+|.+.+..+..+..++ .|++|++++|.+.+..+..+..+. |+.|++++|.+.+..+..+..+++|+.|++++|.+...
T Consensus 158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 236 (313)
T 1ogq_A 158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFD 236 (313)
T ss_dssp SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCB
T ss_pred CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeee
Confidence 9998878888888887 899999999988877777787776 89999998888877788888888888888888888755
Q ss_pred CcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCc
Q 035512 238 IPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNS 309 (372)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 309 (372)
.+. +..+++|++|++++|.+++..|..+..+++|++|++++|.+.+.+... ..+++|+.+++++|.
T Consensus 237 ~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-----~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 237 LGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-----GNLQRFDVSAYANNK 302 (313)
T ss_dssp GGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-----TTGGGSCGGGTCSSS
T ss_pred cCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-----ccccccChHHhcCCC
Confidence 444 677788888888888888778888888888888888888876543332 355666666777776
No 4
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.5e-38 Score=311.63 Aligned_cols=273 Identities=21% Similarity=0.325 Sum_probs=223.7
Q ss_pred CCCChhHHHHHHHHHHhccCCCCccccCCCCCCCCC--Ccc------------cceeecCCCCcEEEEEeCCCCcccccc
Q 035512 5 TSTITTDRDALLALKAHITHDPTNFFAKNWNTNISF--CNW------------TGVACDVHRHRVTVLNISGLNLTGTIP 70 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~------------~~~~~~~~~~~l~~l~l~~~~l~~~~~ 70 (372)
++....|+.||+++|+++ .+|.|.....| ...++ |+| .|+.|.. ..+++.|+++++.+.|.+|
T Consensus 264 ~~~~~~d~~ALl~~k~~l-~~~~W~~~~~~-~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ip 340 (876)
T 4ecn_A 264 TAEYIKDYKALKAIWEAL-DGKNWRYYSGT-INNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGRVP 340 (876)
T ss_dssp CCHHHHHHHHHHHHHHHT-TGGGCCCCCSS-CSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEEEC
T ss_pred cccchHHHHHHHHHHHHc-CCCCCCcCCCc-ccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCcCc
Confidence 344567999999999999 56633233112 22344 999 9999975 5799999999999999999
Q ss_pred ccccCCCCCCEEEC-CCCcCCCC---------------------------------------------------------
Q 035512 71 SQLGNLSSLQSLNL-SFNRLSGS--------------------------------------------------------- 92 (372)
Q Consensus 71 ~~~~~l~~L~~L~l-~~~~~~~~--------------------------------------------------------- 92 (372)
..++.+++|++|+| ++|.+.+.
T Consensus 341 ~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~ 420 (876)
T 4ecn_A 341 DAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKD 420 (876)
T ss_dssp GGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCC
T ss_pred hHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccccc
Confidence 99999999999999 66643221
Q ss_pred -------------------CChhhhCCCCCCEEEcccccccC-----------------CCCcccc--CCCCCCEEEccC
Q 035512 93 -------------------IPSAIFTTYTLKYVNLRQNQLSG-----------------ALPSFIF--NKSSLQHLDFTF 134 (372)
Q Consensus 93 -------------------~~~~~~~l~~L~~L~l~~~~~~~-----------------~~~~~l~--~l~~L~~L~l~~ 134 (372)
+|..+.++++|++|++++|.+++ ..|..+. .+++|++|++++
T Consensus 421 ~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~ 500 (876)
T 4ecn_A 421 SRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN 500 (876)
T ss_dssp CCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred cccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence 67788999999999999999997 2788877 999999999999
Q ss_pred CccccccChhhhcCCCCccEEEccCCc-cCc-cCCccCc-------CCCCCcEEEeecccCccccCc--chhCCCCCCee
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENM-FHG-AIPSNLS-------NCTYLRILSLAYNDFSGAIPR--EIGNLTKLKGL 203 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~--~~~~~~~L~~L 203 (372)
|.+.+.+|..+. .+++|+.|++++|. +.+ .+|..+. .+++|++|++++|.+. .+|. .+..+++|+.|
T Consensus 501 N~l~~~iP~~l~-~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L 578 (876)
T 4ecn_A 501 CPNMTQLPDFLY-DLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLL 578 (876)
T ss_dssp CTTCCSCCGGGG-GCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEE
T ss_pred CCCCccChHHHh-CCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEE
Confidence 998888887665 89999999999998 776 5555444 4559999999999998 6777 78999999999
Q ss_pred eccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCC-CCEEEccCCccccccCccccCcC--CCCEEeccCC
Q 035512 204 YLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRN-LEELNLGDNKLVGTIPTAIFNVS--KLKALKLYSN 280 (372)
Q Consensus 204 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~L~~L~l~~~ 280 (372)
++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|..+...+ +|+.|++++|
T Consensus 579 ~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N 654 (876)
T 4ecn_A 579 DCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYN 654 (876)
T ss_dssp ECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSS
T ss_pred ECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCC
Confidence 99999988 666 7889999999999999988 67777888888 999999999988 6677776654 4888888888
Q ss_pred cccccc
Q 035512 281 SLLGSL 286 (372)
Q Consensus 281 ~~~~~~ 286 (372)
.+.+..
T Consensus 655 ~l~g~i 660 (876)
T 4ecn_A 655 KIGSEG 660 (876)
T ss_dssp CTTTTS
T ss_pred cCCCcc
Confidence 875543
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=2e-37 Score=306.14 Aligned_cols=231 Identities=37% Similarity=0.540 Sum_probs=162.0
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChh-hhCCCCCCEEEcccccccCCCCccccC--------
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSA-IFTTYTLKYVNLRQNQLSGALPSFIFN-------- 123 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~~~l~~-------- 123 (372)
++++.|++++|.+++..|..|+.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+++..|..+..
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L 373 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTL 373 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEE
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEE
Confidence 56677777777766666666666666666666666665555543 566666666666666555444444333
Q ss_pred -------------------CCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecc
Q 035512 124 -------------------KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN 184 (372)
Q Consensus 124 -------------------l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 184 (372)
+++|++|++++|.+.+.+|..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|
T Consensus 374 ~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 374 DLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp ECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 44555555555555545554443 5677777777777777667777777777777777777
Q ss_pred cCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCc
Q 035512 185 DFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPT 264 (372)
Q Consensus 185 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 264 (372)
.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|.+....|..+..+++|++|++++|.+.+..|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 77766777777777788888888877777777777888888888888887777777788888888888888888777787
Q ss_pred cccCcCCCCEEeccCCcccc
Q 035512 265 AIFNVSKLKALKLYSNSLLG 284 (372)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~ 284 (372)
.+..+++|+.|++++|.+.+
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g 552 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNG 552 (768)
T ss_dssp GGGGCTTCCEEECCSSEEES
T ss_pred HHcCCCCCCEEECCCCccCC
Confidence 88888888888888877653
No 6
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=2.3e-37 Score=288.58 Aligned_cols=309 Identities=23% Similarity=0.283 Sum_probs=259.8
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCC-ChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI-PSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHL 130 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L 130 (372)
.+++++|++++|.+++..+..|..+++|++|++++|.+.+.+ +..|..+++|++|++++|.+++..+..+.++++|++|
T Consensus 29 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 29 PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 367999999999999888889999999999999999987444 5678999999999999999988888899999999999
Q ss_pred EccCCccccccCh-hhhcCCCCccEEEccCCccCccCCcc-CcCCCCCcEEEeecccCccccCcchhC------------
Q 035512 131 DFTFNTLSGEIPA-NICSNLPFLEILSLQENMFHGAIPSN-LSNCTYLRILSLAYNDFSGAIPREIGN------------ 196 (372)
Q Consensus 131 ~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~~~------------ 196 (372)
++++|.+.+..+. ..+..+++|++|++++|.+.+..+.. +.++++|++|++++|.+.+..+..+..
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 9999998754433 33557999999999999998776665 789999999999999887655544433
Q ss_pred ----------------------CCCCCeeeccCCccccccCcccc-----------------------------------
Q 035512 197 ----------------------LTKLKGLYLGANRLQGEIPREFG----------------------------------- 219 (372)
Q Consensus 197 ----------------------~~~L~~L~l~~~~~~~~~~~~l~----------------------------------- 219 (372)
+++|+.|++++|.+.+..+..+.
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 25688888888876543322221
Q ss_pred ----CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcC
Q 035512 220 ----NLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLP 295 (372)
Q Consensus 220 ----~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 295 (372)
..++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+ ..+....+.
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~ 344 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFL----GSIDSRMFE 344 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----CEECGGGGT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCcc----CCcChhHhc
Confidence 125799999999999888888899999999999999999988888999999999999999988 444455677
Q ss_pred ccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCC
Q 035512 296 NLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 296 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
.+++|+.|++++|.+++..+..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|++++..|.
T Consensus 345 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~~~~~~ 413 (455)
T 3v47_A 345 NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCPR 413 (455)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred CcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHh-----HhccCCcccEEEccCCCcccCCCc
Confidence 888899999999999988888999999999999999999887765 478899999999999999987774
No 7
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=281.19 Aligned_cols=304 Identities=20% Similarity=0.221 Sum_probs=270.2
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 45799999999999988888999999999999999999987889999999999999999999977667789999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 111 Ls~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~ 189 (477)
T 2id5_A 111 ISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN 189 (477)
T ss_dssp CTTSCCC-EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred CCCCccc-cCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence 9999998 455555568999999999999998888888999999999999999998766677899999999999999998
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+..+..+..+++|+.|++++|......+.......+|++|++++|.+++..+..+.++++|+.|++++|.+ ..++.
T Consensus 190 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l----~~~~~ 265 (477)
T 2id5_A 190 AIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPI----STIEG 265 (477)
T ss_dssp EECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCC----CEECT
T ss_pred EeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcC----CccCh
Confidence 88788899999999999999987766666666667999999999999865556789999999999999998 44555
Q ss_pred cCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
..|..+.+|+.|++++|++.+..+..+..+++|+.|++++|.+...++. .+..+++|+.|++++|++..
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 266 SMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEES-----VFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp TSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGG-----GBSCGGGCCEEECCSSCEEC
T ss_pred hhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHh-----HcCCCcccCEEEccCCCccC
Confidence 5677888899999999999988888999999999999999999887765 57889999999999999874
No 8
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=272.91 Aligned_cols=303 Identities=20% Similarity=0.226 Sum_probs=268.1
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (372)
+.++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45677777776 5565443 58999999999999777889999999999999999999888899999999999999999
Q ss_pred ccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccC
Q 035512 136 TLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIP 215 (372)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 215 (372)
.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+
T Consensus 91 ~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 91 RLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp CCC-SCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred cCC-ccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 998 7887777789999999999999998888899999999999999999988778889999999999999999987766
Q ss_pred ccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcC
Q 035512 216 REFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLP 295 (372)
Q Consensus 216 ~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 295 (372)
..+..+++|+.|++++|.+....+..+..+++|++|++++|...+..+.......+|++|++++|.+ ..++...+.
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l----~~~~~~~~~ 245 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNL----TAVPYLAVR 245 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCC----CSCCHHHHT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcc----cccCHHHhc
Confidence 7789999999999999999888888899999999999999987767776666777999999999988 556655677
Q ss_pred ccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 296 NLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 296 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
.++.|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|.+++..+..|
T Consensus 246 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~~~ 316 (477)
T 2id5_A 246 HLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPY-----AFRGLNYLRVLNVSGNQLTTLEESVF 316 (477)
T ss_dssp TCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTT-----TBTTCTTCCEEECCSSCCSCCCGGGB
T ss_pred CccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHH-----HhcCcccCCEEECCCCcCceeCHhHc
Confidence 888899999999999988888899999999999999999988776 68899999999999999998555443
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.5e-34 Score=276.54 Aligned_cols=311 Identities=21% Similarity=0.183 Sum_probs=206.3
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.+.+++|++++|.+++..+..|..+++|++|++++|.+.+..+.+|.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 32 ~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 111 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF 111 (606)
T ss_dssp CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence 45789999999999887788899999999999999998877788899999999999999988877788888999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCC--eeeccCCc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLK--GLYLGANR 209 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~--~L~l~~~~ 209 (372)
+++|.+. .++...+..+++|++|++++|.+.+.....+..+++|++|++++|.+....+..+..+++++ .|++++|.
T Consensus 112 L~~n~i~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~ 190 (606)
T 3t6q_A 112 FIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGND 190 (606)
T ss_dssp CTTSCCS-CGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCC
T ss_pred ccccCcc-cCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCc
Confidence 9999887 44333455788899999988888765444455588888888888877765555666666666 55555554
Q ss_pred ccccc---------------------------------------------------------------------------
Q 035512 210 LQGEI--------------------------------------------------------------------------- 214 (372)
Q Consensus 210 ~~~~~--------------------------------------------------------------------------- 214 (372)
+.+..
T Consensus 191 l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~ 270 (606)
T 3t6q_A 191 IAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNIS 270 (606)
T ss_dssp CCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCC
T ss_pred cCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccC
Confidence 43322
Q ss_pred CccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCc
Q 035512 215 PREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRL 294 (372)
Q Consensus 215 ~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (372)
+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. ++...+
T Consensus 271 ~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~---~~~~~~ 346 (606)
T 3t6q_A 271 SNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLE---LGTGCL 346 (606)
T ss_dssp TTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCB---CCSSTT
T ss_pred HHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccc---cchhhh
Confidence 222445556666666666655 3455556666666666666666555555555666666666666554211 122223
Q ss_pred C--------------------------ccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCccccccc
Q 035512 295 P--------------------------NLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLS 348 (372)
Q Consensus 295 ~--------------------------~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~ 348 (372)
. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+. ..+.
T Consensus 347 ~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~ 422 (606)
T 3t6q_A 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQ----SPFQ 422 (606)
T ss_dssp TTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTC----CTTT
T ss_pred hccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccc----hhhh
Confidence 3 344444445555544444444455555555555555554443332 1255
Q ss_pred CCCCCcEEeCcCCcccccCCCCC
Q 035512 349 NFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 349 ~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
.+++|+.|++++|.+++..|..|
T Consensus 423 ~l~~L~~L~l~~n~l~~~~~~~~ 445 (606)
T 3t6q_A 423 NLHLLKVLNLSHSLLDISSEQLF 445 (606)
T ss_dssp TCTTCCEEECTTCCCBTTCTTTT
T ss_pred CcccCCEEECCCCccCCcCHHHH
Confidence 66777777777777766666554
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=2.5e-34 Score=277.57 Aligned_cols=302 Identities=25% Similarity=0.283 Sum_probs=270.5
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.+++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+.+..+..+..+++|++|+++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 333 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIK 333 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECC
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECC
Confidence 7999999999999888888999999999999999998 788889999999999999999997778889999999999999
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccC--CccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAI--PSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~--~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+|.+.+.++...+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 334 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 413 (606)
T 3t6q_A 334 GNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLK 413 (606)
T ss_dssp SCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEE
T ss_pred CCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCC
Confidence 999887888877778999999999999988654 678899999999999999998888888999999999999999988
Q ss_pred cccC-ccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccc---cCccccCcCCCCEEeccCCccccccC
Q 035512 212 GEIP-REFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGT---IPTAIFNVSKLKALKLYSNSLLGSLS 287 (372)
Q Consensus 212 ~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~ 287 (372)
+..+ ..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.
T Consensus 414 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~---- 489 (606)
T 3t6q_A 414 VKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLS---- 489 (606)
T ss_dssp CCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCC----
T ss_pred CcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccC----
Confidence 6654 4488999999999999999888888899999999999999998752 2366889999999999999984
Q ss_pred CCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCccccc
Q 035512 288 SIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 288 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 366 (372)
.+....+..++.|+.|++++|++++..+..+..++.| .|++++|.+++.++. .+..+++|+.|++++|++...
T Consensus 490 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~-----~~~~l~~L~~L~l~~N~~~c~ 562 (606)
T 3t6q_A 490 SIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS-----LLPILSQQRTINLRQNPLDCT 562 (606)
T ss_dssp EECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGG-----GHHHHHTSSEEECTTCCEECS
T ss_pred ccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHh-----hcccCCCCCEEeCCCCCcccc
Confidence 4444567788889999999999998889999999999 999999999987776 577889999999999999764
No 11
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=1.8e-33 Score=271.54 Aligned_cols=110 Identities=19% Similarity=0.193 Sum_probs=61.0
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
+++++|++++|.+++..|..|..+++|++|++++|.+++..|..|.++++|++|++++|.++...+..+..+++|++|++
T Consensus 56 ~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 135 (606)
T 3vq2_A 56 SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135 (606)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEEC
T ss_pred ccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeC
Confidence 45555555555555544555555555555555555555444555555555555555555555444445555566666666
Q ss_pred cCCcccc-ccChhhhcCCCCccEEEccCCccC
Q 035512 133 TFNTLSG-EIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 133 ~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
++|.+.+ .+|..+. .+++|++|++++|.+.
T Consensus 136 ~~n~l~~~~lp~~~~-~l~~L~~L~Ls~n~l~ 166 (606)
T 3vq2_A 136 AHNFIHSCKLPAYFS-NLTNLVHVDLSYNYIQ 166 (606)
T ss_dssp CSSCCCCCCCCGGGG-TCTTCCEEECCSSCCC
T ss_pred CCCcccceechHhHh-hcCCCCEEEccCCcce
Confidence 6655542 2344333 5666666666665544
No 12
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=6e-34 Score=265.53 Aligned_cols=301 Identities=21% Similarity=0.270 Sum_probs=246.1
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCC-CCccccCCCCCCEEEccCC
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGA-LPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~ 135 (372)
.++.+++.++ .+|. + .++|++|++++|.+++..+..+.++++|++|++++|.+.+. .+..|..+++|++|++++|
T Consensus 14 ~~~c~~~~l~-~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n 89 (455)
T 3v47_A 14 NAICINRGLH-QVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89 (455)
T ss_dssp EEECCSSCCS-SCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred ccCcCCCCcc-cCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence 4666777776 5554 2 37899999999999977788999999999999999988643 4667899999999999999
Q ss_pred ccccccChhhhcCCCCccEEEccCCccCccCCc--cCcCCCCCcEEEeecccCccccCcc-hhCCCCCCeeeccCCcccc
Q 035512 136 TLSGEIPANICSNLPFLEILSLQENMFHGAIPS--NLSNCTYLRILSLAYNDFSGAIPRE-IGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~ 212 (372)
.+.+..+.. +..+++|++|++++|.+.+..+. .+..+++|++|++++|.+.+..+.. +..+++|++|++++|.+.+
T Consensus 90 ~l~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~ 168 (455)
T 3v47_A 90 QFLQLETGA-FNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKS 168 (455)
T ss_dssp TTCEECTTT-TTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSC
T ss_pred ccCccChhh-ccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccc
Confidence 998444444 45899999999999999864433 4889999999999999998776655 8899999999999999887
Q ss_pred ccCccccCC----------------------------------CCCCEEEccCCcccccCccccc---------------
Q 035512 213 EIPREFGNL----------------------------------AVLELMSLAGNNLQEKIPPEIG--------------- 243 (372)
Q Consensus 213 ~~~~~l~~~----------------------------------~~L~~L~l~~~~~~~~~~~~l~--------------- 243 (372)
..+..+..+ ++|++|++++|.+....+..+.
T Consensus 169 ~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~ 248 (455)
T 3v47_A 169 ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248 (455)
T ss_dssp CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTT
T ss_pred cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeecc
Confidence 666554433 5788888888876543332221
Q ss_pred ------------------------CCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccc
Q 035512 244 ------------------------NLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEV 299 (372)
Q Consensus 244 ------------------------~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 299 (372)
..++|++|++++|.+.+..+..+..+++|++|++++|.+. .++...+..+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~ 324 (455)
T 3v47_A 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN----KIDDNAFWGLTH 324 (455)
T ss_dssp CTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCC----EECTTTTTTCTT
T ss_pred ccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCccc----ccChhHhcCccc
Confidence 1258999999999998888889999999999999999984 344456677888
Q ss_pred ccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 300 LLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 300 L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|++|++++|++++..++.|
T Consensus 325 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~L~~N~l~~~~~~~~ 391 (455)
T 3v47_A 325 LLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQ-----SFLGLPNLKELALDTNQLKSVPDGIF 391 (455)
T ss_dssp CCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTT-----TTTTCTTCCEEECCSSCCSCCCTTTT
T ss_pred CCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChh-----hccccccccEEECCCCccccCCHhHh
Confidence 88999999999888888899999999999999999888776 58889999999999999998555443
No 13
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.4e-33 Score=257.78 Aligned_cols=290 Identities=21% Similarity=0.221 Sum_probs=234.2
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.++++++.++...+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 124 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVL 124 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEEC
Confidence 67889999999998666666889999999999999998777778999999999999999999888888999999999999
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc-
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ- 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~- 211 (372)
++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.... +..+++|+.+++++|.+.
T Consensus 125 ~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~ 200 (390)
T 3o6n_A 125 ERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLST 200 (390)
T ss_dssp CSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSE
T ss_pred CCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccc
Confidence 999998 888887778999999999999998877888999999999999999887542 344555555555555443
Q ss_pred ------------------cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCC
Q 035512 212 ------------------GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLK 273 (372)
Q Consensus 212 ------------------~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 273 (372)
.... ...++|+.|++++|.+... ..+..+++|++|++++|.+.+..+..+.++++|+
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~ 275 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLE 275 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCC
T ss_pred cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCC
Confidence 2211 1235788888888887653 5678888999999999998877788888999999
Q ss_pred EEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCC
Q 035512 274 ALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSL 353 (372)
Q Consensus 274 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L 353 (372)
+|++++|.+.+ ++. .+..+++|+.|++++|++.. ++..+..+++|++|++++|++.... +..+++|
T Consensus 276 ~L~L~~n~l~~----~~~-~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~N~i~~~~--------~~~~~~L 341 (390)
T 3o6n_A 276 RLYISNNRLVA----LNL-YGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLYLDHNSIVTLK--------LSTHHTL 341 (390)
T ss_dssp EEECCSSCCCE----EEC-SSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEECCSSCCCCCC--------CCTTCCC
T ss_pred EEECCCCcCcc----cCc-ccCCCCCCCEEECCCCccee-cCccccccCcCCEEECCCCccceeC--------chhhccC
Confidence 99999998843 222 22456677777999998884 5556778899999999999887653 4567899
Q ss_pred cEEeCcCCcccc
Q 035512 354 THIVLSNNPLDG 365 (372)
Q Consensus 354 ~~L~l~~~~l~~ 365 (372)
+.|++++|++..
T Consensus 342 ~~L~l~~N~~~~ 353 (390)
T 3o6n_A 342 KNLTLSHNDWDC 353 (390)
T ss_dssp SEEECCSSCEEH
T ss_pred CEEEcCCCCccc
Confidence 999999998864
No 14
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=2.6e-33 Score=270.52 Aligned_cols=145 Identities=18% Similarity=0.190 Sum_probs=83.1
Q ss_pred ccccCCCCCCEEEccCCcccccCc-ccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCc
Q 035512 216 REFGNLAVLELMSLAGNNLQEKIP-PEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRL 294 (372)
Q Consensus 216 ~~l~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (372)
..+..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .....+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~ 469 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDN---TLSNVF 469 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG---EECSCC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCc---chHHhh
Confidence 334444555555555555544433 3455555566666666655555555555666666666666655321 112234
Q ss_pred CccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCC
Q 035512 295 PNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 295 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
..+++|+.|++++|.+++..+..+..+++|++|++++|.+.+..+. .+..+++|+.|++++|++++ +|.
T Consensus 470 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~-----~~~~l~~L~~L~l~~N~l~~-~p~ 538 (606)
T 3vq2_A 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSS-----HYNQLYSLSTLDCSFNRIET-SKG 538 (606)
T ss_dssp TTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGG-----GTTTCTTCCEEECTTSCCCC-EES
T ss_pred ccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHH-----HccCCCcCCEEECCCCcCcc-cCH
Confidence 4556666666776666666666666666777777777766665444 45666677777777777664 444
No 15
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=3.2e-34 Score=277.29 Aligned_cols=304 Identities=21% Similarity=0.263 Sum_probs=245.0
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCc-CCC-CCChhhhCC------CCCCEEEcccccccCCCCc--cc
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSG-SIPSAIFTT------YTLKYVNLRQNQLSGALPS--FI 121 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l------~~L~~L~l~~~~~~~~~~~--~l 121 (372)
.+++++|++++|.+.+.+|..+..+++|++|++++|. +++ .+|..+..+ ++|++|++++|.++ .+|. .+
T Consensus 248 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l 326 (636)
T 4eco_A 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSL 326 (636)
T ss_dssp CTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHH
T ss_pred cCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhh
Confidence 5689999999999999999999999999999999998 887 788888776 89999999999998 7787 89
Q ss_pred cCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCC-CcEEEeecccCccccCcchhCCC--
Q 035512 122 FNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTY-LRILSLAYNDFSGAIPREIGNLT-- 198 (372)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~-- 198 (372)
..+++|++|++++|.+.+.+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. ..|..+....
T Consensus 327 ~~l~~L~~L~L~~N~l~g~ip--~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~ 402 (636)
T 4eco_A 327 QKMKKLGMLECLYNQLEGKLP--AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402 (636)
T ss_dssp TTCTTCCEEECCSCCCEEECC--CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSS
T ss_pred ccCCCCCEEeCcCCcCccchh--hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccC
Confidence 999999999999999988888 4457899999999999887 67777888888 999999999888 5666665544
Q ss_pred CCCeeeccCCccccccCcccc-------CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCc--
Q 035512 199 KLKGLYLGANRLQGEIPREFG-------NLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNV-- 269 (372)
Q Consensus 199 ~L~~L~l~~~~~~~~~~~~l~-------~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-- 269 (372)
+|+.|++++|.+.+..|..+. .+++|+.|++++|.+....+..+..+++|++|++++|.++...+..+...
T Consensus 403 ~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~~~~ 482 (636)
T 4eco_A 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482 (636)
T ss_dssp CEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSSSSEETTE
T ss_pred ccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHHHhccccc
Confidence 789999999988877777777 67788999999998886555556678889999999988874333333333
Q ss_pred -----CCCCEEeccCCccccccCCCCCcCc-CccccccccccCCCccccCCCccccCCCCCCEEecC------CCccccC
Q 035512 270 -----SKLKALKLYSNSLLGSLSSIPDFRL-PNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLG------DNYLTSS 337 (372)
Q Consensus 270 -----~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~------~n~~~~~ 337 (372)
++|++|++++|.+. .++...+ ..+++|+.|++++|++++ +|..+..+++|+.|+++ +|.+.+.
T Consensus 483 ~~~~l~~L~~L~Ls~N~l~----~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~ 557 (636)
T 4eco_A 483 NFKNTYLLTSIDLRFNKLT----KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLRE 557 (636)
T ss_dssp ECTTGGGCCEEECCSSCCC----BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCC
T ss_pred cccccCCccEEECcCCcCC----ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCccccc
Confidence 28889999988883 3443322 367777777888888886 67778888888888884 4666666
Q ss_pred CCCCcccccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 338 TPELSFLSSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 338 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
.|. .+..+++|++|++++|+++ .+|..+
T Consensus 558 ~p~-----~l~~l~~L~~L~Ls~N~l~-~ip~~~ 585 (636)
T 4eco_A 558 WPE-----GITLCPSLTQLQIGSNDIR-KVNEKI 585 (636)
T ss_dssp CCT-----TGGGCSSCCEEECCSSCCC-BCCSCC
T ss_pred ChH-----HHhcCCCCCEEECCCCcCC-ccCHhH
Confidence 665 5777888888888888884 577655
No 16
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-33 Score=276.71 Aligned_cols=315 Identities=20% Similarity=0.235 Sum_probs=220.8
Q ss_pred CCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCC-ChhhhCCCCCCEEEcccccccCCCC
Q 035512 40 FCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSI-PSAIFTTYTLKYVNLRQNQLSGALP 118 (372)
Q Consensus 40 ~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~ 118 (372)
.++|..+-+ ..++++.|++++|.+++..+..|..+++|++|++++|.....+ +.+|.++++|++|++++|.+.+..|
T Consensus 13 ~~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p 90 (844)
T 3j0a_A 13 FCNLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHP 90 (844)
T ss_dssp CCCSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECT
T ss_pred CCCCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCH
Confidence 455666655 4679999999999999888899999999999999999654444 7889999999999999999998889
Q ss_pred ccccCCCCCCEEEccCCccccccChh-hhcCCCCccEEEccCCccCccCC-ccCcCCCCCcEEEeecccCccccCcchhC
Q 035512 119 SFIFNKSSLQHLDFTFNTLSGEIPAN-ICSNLPFLEILSLQENMFHGAIP-SNLSNCTYLRILSLAYNDFSGAIPREIGN 196 (372)
Q Consensus 119 ~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~ 196 (372)
..|.++++|++|++++|.+.+.++.. .+..+++|++|++++|.+.+..+ ..+.++++|++|++++|.+....+..+..
T Consensus 91 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~ 170 (844)
T 3j0a_A 91 DAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEP 170 (844)
T ss_dssp TSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHH
T ss_pred hHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccc
Confidence 99999999999999999998655543 45689999999999999887644 57899999999999999988766666665
Q ss_pred C--CCCCeeeccCCccccccCccccCCCC------CCEEEccCCcccccCcccc--------------------------
Q 035512 197 L--TKLKGLYLGANRLQGEIPREFGNLAV------LELMSLAGNNLQEKIPPEI-------------------------- 242 (372)
Q Consensus 197 ~--~~L~~L~l~~~~~~~~~~~~l~~~~~------L~~L~l~~~~~~~~~~~~l-------------------------- 242 (372)
+ ++|+.|++++|.+.+..+..+..++. |+.|++++|.+....+..+
T Consensus 171 l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~ 250 (844)
T 3j0a_A 171 LQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFH 250 (844)
T ss_dssp HHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCS
T ss_pred ccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccc
Confidence 5 67777777777766555544444433 6666666664432222111
Q ss_pred ----------cC--CCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCcc
Q 035512 243 ----------GN--LRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSF 310 (372)
Q Consensus 243 ----------~~--~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~ 310 (372)
.. .++|++|++++|.+.+..+..+..+++|++|++++|.+. .+....|..+++|+.|++++|.+
T Consensus 251 ~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~----~~~~~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 251 NIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKIN----KIADEAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp SSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCC----EECTTTTTTCSSCCEEEEESCCC
T ss_pred ccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCC----CCChHHhcCCCCCCEEECCCCCC
Confidence 11 145666666666665555556666666666666666652 22333444555555556666666
Q ss_pred ccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 311 SGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 311 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
++..+..+..+++|+.|++++|.+....+. .+..+++|+.|++++|.+++
T Consensus 327 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~-----~~~~l~~L~~L~Ls~N~l~~ 376 (844)
T 3j0a_A 327 GELYSSNFYGLPKVAYIDLQKNHIAIIQDQ-----TFKFLEKLQTLDLRDNALTT 376 (844)
T ss_dssp SCCCSCSCSSCTTCCEEECCSCCCCCCCSS-----CSCSCCCCCEEEEETCCSCC
T ss_pred CccCHHHhcCCCCCCEEECCCCCCCccChh-----hhcCCCCCCEEECCCCCCCc
Confidence 555555666666666666666665554443 34455555555555555543
No 17
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=8.5e-33 Score=264.98 Aligned_cols=111 Identities=22% Similarity=0.215 Sum_probs=73.5
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.+++++|++++|.+++..+..|+.+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|+
T Consensus 51 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 130 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130 (570)
T ss_dssp CSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEE
T ss_pred CCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEe
Confidence 45667777777777665566667777777777777776655556667777777777777766654444566777777777
Q ss_pred ccCCcccc-ccChhhhcCCCCccEEEccCCccC
Q 035512 132 FTFNTLSG-EIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 132 l~~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
+++|.+.+ .+|..+. .+++|++|++++|.+.
T Consensus 131 L~~n~l~~~~lp~~~~-~l~~L~~L~l~~n~l~ 162 (570)
T 2z63_A 131 VAHNLIQSFKLPEYFS-NLTNLEHLDLSSNKIQ 162 (570)
T ss_dssp CCSSCCCCCCCCGGGG-GCTTCCEEECTTSCCC
T ss_pred cCCCccceecChhhhc-ccCCCCEEeCcCCccc
Confidence 77777653 2454443 6777777777766554
No 18
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.2e-33 Score=266.31 Aligned_cols=318 Identities=20% Similarity=0.208 Sum_probs=248.5
Q ss_pred CCCCccccCCCCCCCCCCc----ccceeecC----------------CCCcEEEEEeCCCCccccccccccCCCCCCEEE
Q 035512 24 HDPTNFFAKNWNTNISFCN----WTGVACDV----------------HRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLN 83 (372)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~----~~~~~~~~----------------~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~ 83 (372)
++....++ .|.....||. |..+.|.. ...+++.++++++.++...+..|..+++|++|+
T Consensus 3 g~~~~~l~-~~~~~~~C~~~~~~~~c~~~~~~i~~~~~~~~~~~~~l~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~ 81 (597)
T 3oja_B 3 GQQRYNVK-PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 81 (597)
T ss_dssp ---------CCCSEECCCCC--CCSEEECSCEECSSCCCCEESCSSGGGCCCSEEEESSCEESEECTHHHHHCCCCSEEE
T ss_pred Cccccccc-CCCCCCcCcccCcCceeEecCceecccccccccCcccccCCCceEEEeeCCCCCCcCHHHHccCCCCcEEE
Confidence 44555666 8888777764 54433321 125678899999999866667789999999999
Q ss_pred CCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccC
Q 035512 84 LSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 84 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
+++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+. .+|...+..+++|++|++++|.+.
T Consensus 82 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~ 160 (597)
T 3oja_B 82 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE 160 (597)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC
T ss_pred CCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC
Confidence 9999999777789999999999999999999888888899999999999999998 788887778999999999999999
Q ss_pred ccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc-------------------ccCccccCCCCC
Q 035512 164 GAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG-------------------EIPREFGNLAVL 224 (372)
Q Consensus 164 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-------------------~~~~~l~~~~~L 224 (372)
+..+..+..+++|++|++++|.+.+.. +..+++|+.|++++|.+.+ ..+. ..++|
T Consensus 161 ~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l~~l~~~~~L~~L~ls~n~l~~~~~~---~~~~L 234 (597)
T 3oja_B 161 RIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGP---VNVEL 234 (597)
T ss_dssp BCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCCSEEECCTTCSEEECCSSCCCEEECS---CCSCC
T ss_pred CCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCccccccCCchhheeeccCCcccccccc---cCCCC
Confidence 888888999999999999999887542 3445556665555554432 2111 12568
Q ss_pred CEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccc
Q 035512 225 ELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWD 304 (372)
Q Consensus 225 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~ 304 (372)
+.|++++|.+.. +..+..+++|++|++++|.+.+..|..+.++++|+.|++++|.+.+ ++. .+..+++|+.|+
T Consensus 235 ~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----l~~-~~~~l~~L~~L~ 307 (597)
T 3oja_B 235 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA----LNL-YGQPIPTLKVLD 307 (597)
T ss_dssp CEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE----EEC-SSSCCTTCCEEE
T ss_pred CEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC----CCc-ccccCCCCcEEE
Confidence 888888888764 3678888999999999999988888899999999999999998844 222 223566777779
Q ss_pred cCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 305 LENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 305 l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
+++|.+. .+|..+..+++|+.|++++|.+.+.+ +..+++|+.|++++|++.+
T Consensus 308 Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~--------~~~~~~L~~L~l~~N~~~~ 359 (597)
T 3oja_B 308 LSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK--------LSTHHTLKNLTLSHNDWDC 359 (597)
T ss_dssp CCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC--------CCTTCCCSEEECCSSCEEH
T ss_pred CCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC--------hhhcCCCCEEEeeCCCCCC
Confidence 9999988 45666788999999999999987654 4567899999999999865
No 19
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=3.2e-32 Score=266.24 Aligned_cols=281 Identities=24% Similarity=0.266 Sum_probs=189.3
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.++...+..|.++++|++|+
T Consensus 24 ~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp CTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence 35788899999888877777788888899999988888877788888888899999988888865555788888888888
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchh--CCCCCCeeeccCCc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIG--NLTKLKGLYLGANR 209 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 209 (372)
+++|.+. .++...+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+..+..+. .+++|+.|++++|.
T Consensus 104 L~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~ 182 (680)
T 1ziw_A 104 LMSNSIQ-KIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQ 182 (680)
T ss_dssp CCSSCCC-CCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCC
T ss_pred CCCCccC-ccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCc
Confidence 8888887 55555555788888888888888777777777888888888888776654443332 33556666666555
Q ss_pred ccccc---------------------------------------------------CccccCCC--CCCEEEccCCcccc
Q 035512 210 LQGEI---------------------------------------------------PREFGNLA--VLELMSLAGNNLQE 236 (372)
Q Consensus 210 ~~~~~---------------------------------------------------~~~l~~~~--~L~~L~l~~~~~~~ 236 (372)
+.+.. +..+..++ +|+.|++++|.+..
T Consensus 183 l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~ 262 (680)
T 1ziw_A 183 IKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV 262 (680)
T ss_dssp CCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred ccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence 44333 33333332 26666666666655
Q ss_pred cCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcccccc-----CCCCCcCcCccccccccccCCCccc
Q 035512 237 KIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSL-----SSIPDFRLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-----~~~~~~~~~~l~~L~~l~l~~~~~~ 311 (372)
..+..+..+++|++|++++|.+.+..+..+.++++|+.|++++|...+.+ ..+....|..++.|+.|++++|.+.
T Consensus 263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 55556666666666666666666555555666666666666554322110 1111223445566666677777766
Q ss_pred cCCCccccCCCCCCEEecCCCc
Q 035512 312 GFIPNTLGNLRNLERLNLGDNY 333 (372)
Q Consensus 312 ~~~~~~~~~~~~L~~L~l~~n~ 333 (372)
+..+..+..+++|++|++++|.
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCB
T ss_pred CCChhHhccccCCcEEECCCCc
Confidence 6556566666666666666554
No 20
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=3e-33 Score=248.98 Aligned_cols=272 Identities=22% Similarity=0.302 Sum_probs=220.4
Q ss_pred CCCChhHHHHHHHHHHhccCCCCccccCCC----CCCCCCCcccceeec--------CCCCcEEEEEeCCCCcccccccc
Q 035512 5 TSTITTDRDALLALKAHITHDPTNFFAKNW----NTNISFCNWTGVACD--------VHRHRVTVLNISGLNLTGTIPSQ 72 (372)
Q Consensus 5 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~--------~~~~~l~~l~l~~~~l~~~~~~~ 72 (372)
.+...+++.+|+.+|..+..||..|+. .| ....++|.|.|+.|. ...++++.|+++++.++ .+|..
T Consensus 22 ~~~~~~~~~aLl~~k~~~~~~~~~~~~-~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~ 99 (328)
T 4fcg_A 22 STALRPYHDVLSQWQRHYNADRNRWHS-AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQ 99 (328)
T ss_dssp -CCCCCHHHHHHHHHHHHHHCCTTHHH-HHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSC
T ss_pred cccCchHHHHHHHHHHhccCCchhhhh-hhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChh
Confidence 345678999999999999999999997 99 567789999999984 23578999999999998 77777
Q ss_pred ccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhh------
Q 035512 73 LGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANIC------ 146 (372)
Q Consensus 73 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~------ 146 (372)
+..+++|++|++++|.++ .+|..+..+++|++|++++|.++ ..|..+..+++|++|++++|...+.+|..+.
T Consensus 100 l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~ 177 (328)
T 4fcg_A 100 AFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASG 177 (328)
T ss_dssp GGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CC
T ss_pred hhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchh
Confidence 888999999999999998 88888999999999999999998 7788899999999999999887777776553
Q ss_pred --cCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCC
Q 035512 147 --SNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVL 224 (372)
Q Consensus 147 --~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 224 (372)
..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+ .+..+..+++|++|++++|.+.+..|..+..+++|
T Consensus 178 ~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L 255 (328)
T 4fcg_A 178 EHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPL 255 (328)
T ss_dssp CEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCC
T ss_pred hhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCC
Confidence 24777888888887776 556667778888888888887773 44557777788888888877777777777777788
Q ss_pred CEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 225 ELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 225 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
+.|++++|.+....|..+..+++|++|++++|.+.+.+|..+.++++|+.+.+..+.+
T Consensus 256 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~ 313 (328)
T 4fcg_A 256 KRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313 (328)
T ss_dssp CEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred CEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence 8888887777777777777777888888888777777777777778877777776544
No 21
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=8.4e-32 Score=263.32 Aligned_cols=308 Identities=24% Similarity=0.324 Sum_probs=188.4
Q ss_pred EEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccC-----CCC----ccccCCC
Q 035512 55 VTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSG-----ALP----SFIFNKS 125 (372)
Q Consensus 55 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-----~~~----~~l~~l~ 125 (372)
++.|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|+++++...+ ..| ..+..++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~ 329 (680)
T 1ziw_A 250 LTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLK 329 (680)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCT
T ss_pred CCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCC
Confidence 6666666666665555666666666666666666655445444444444444444332111 011 1233444
Q ss_pred CCCEEEccCCccccccChhhhcCCCC----------------------------ccEEEccCCccCccCCccCcCCCCCc
Q 035512 126 SLQHLDFTFNTLSGEIPANICSNLPF----------------------------LEILSLQENMFHGAIPSNLSNCTYLR 177 (372)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~l~~----------------------------L~~L~l~~~~~~~~~~~~l~~l~~L~ 177 (372)
+|++|++++|.+. .++...+..+++ |+.|++++|.+.+..+..+..+++|+
T Consensus 330 ~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (680)
T 1ziw_A 330 CLEHLNMEDNDIP-GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLE 408 (680)
T ss_dssp TCCEEECCSCCBC-CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCC
T ss_pred CCCEEECCCCccC-CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCC
Confidence 4444444444444 222222223333 44444444555544555666677777
Q ss_pred EEEeecccCccccC-cchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCccc--ccCcccccCCCCCCEEEcc
Q 035512 178 ILSLAYNDFSGAIP-REIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQ--EKIPPEIGNLRNLEELNLG 254 (372)
Q Consensus 178 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L~l~ 254 (372)
+|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++.|+.|++.+|.+. ...|..+..+++|++|+++
T Consensus 409 ~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls 488 (680)
T 1ziw_A 409 VLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLS 488 (680)
T ss_dssp EEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECC
T ss_pred EEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECC
Confidence 77777776654333 45666777777777777666555666666677777777776654 3456667777888888888
Q ss_pred CCccccccCccccCcCCCCEEeccCCccccccCC-C---CCcCcCccccccccccCCCccccCCCccccCCCCCCEEecC
Q 035512 255 DNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSS-I---PDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLG 330 (372)
Q Consensus 255 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~---~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~ 330 (372)
+|.+++..+..+.++++|++|++++|.+.+.... + +...+..+++|+.|++++|+++...+..|.++++|+.|+++
T Consensus 489 ~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls 568 (680)
T 1ziw_A 489 NNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLG 568 (680)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECC
Confidence 8887766667777888888888888877432211 1 11235566777777888888775555567778888888888
Q ss_pred CCccccCCCCCcccccccCCCCCcEEeCcCCcccccCC
Q 035512 331 DNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILP 368 (372)
Q Consensus 331 ~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 368 (372)
+|.+++.++. .+..+++|+.|++++|++++..|
T Consensus 569 ~N~l~~l~~~-----~~~~l~~L~~L~L~~N~l~~~~~ 601 (680)
T 1ziw_A 569 LNNLNTLPAS-----VFNNQVSLKSLNLQKNLITSVEK 601 (680)
T ss_dssp SSCCCCCCTT-----TTTTCTTCCEEECTTSCCCBCCH
T ss_pred CCCCCcCCHh-----HhCCCCCCCEEECCCCcCCccCh
Confidence 8877766654 45667777777777777776444
No 22
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.4e-32 Score=258.90 Aligned_cols=308 Identities=25% Similarity=0.264 Sum_probs=186.9
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccC-CCCccccCCCCCCEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSG-ALPSFIFNKSSLQHL 130 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~~l~~L~~L 130 (372)
.+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++. ..|..+.++++|++|
T Consensus 75 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L 154 (570)
T 2z63_A 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHL 154 (570)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEE
T ss_pred chhCCEEeCcCCcCCccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEE
Confidence 5688888888888887777788888888888888888875544468888888888888888875 357788888888888
Q ss_pred EccCCccccccChhh-----------------------------------------------------------------
Q 035512 131 DFTFNTLSGEIPANI----------------------------------------------------------------- 145 (372)
Q Consensus 131 ~l~~~~~~~~~~~~~----------------------------------------------------------------- 145 (372)
++++|.+.+..+..+
T Consensus 155 ~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~ 234 (570)
T 2z63_A 155 DLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL 234 (570)
T ss_dssp ECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEE
T ss_pred eCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeecc
Confidence 888887652211111
Q ss_pred -------------------------------------------hcCCCCccEEEccCCccCccCCccCcC----------
Q 035512 146 -------------------------------------------CSNLPFLEILSLQENMFHGAIPSNLSN---------- 172 (372)
Q Consensus 146 -------------------------------------------~~~l~~L~~L~l~~~~~~~~~~~~l~~---------- 172 (372)
+..+++|+.|++++|.+.. .+..+..
T Consensus 235 ~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~~-l~~~~~~~~L~~L~l~~ 313 (570)
T 2z63_A 235 GEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIER-VKDFSYNFGWQHLELVN 313 (570)
T ss_dssp EECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEECS-CCBCCSCCCCSEEEEES
T ss_pred ccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccchh-hhhhhccCCccEEeecc
Confidence 0112333333333333321 1211211
Q ss_pred --------------------------------CCCCcEEEeecccCcccc--CcchhCCCCCCeeeccCCccccccCccc
Q 035512 173 --------------------------------CTYLRILSLAYNDFSGAI--PREIGNLTKLKGLYLGANRLQGEIPREF 218 (372)
Q Consensus 173 --------------------------------l~~L~~L~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l 218 (372)
+++|++|++++|.+.... +..+..+++|++|++++|.+.+..+. +
T Consensus 314 n~~~~l~~~~l~~L~~L~l~~n~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~ 392 (570)
T 2z63_A 314 CKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F 392 (570)
T ss_dssp CBCSSCCBCBCSSCCEEEEESCBSCCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E
T ss_pred CcccccCcccccccCEEeCcCCccccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c
Confidence 222233333333222111 22233344444444444444322222 4
Q ss_pred cCCCCCCEEEccCCcccccCc-ccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcc
Q 035512 219 GNLAVLELMSLAGNNLQEKIP-PEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNL 297 (372)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l 297 (372)
..+++|+.|++++|.+....+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+.+. .++ ..+..+
T Consensus 393 ~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~p-~~~~~l 469 (570)
T 2z63_A 393 LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN--FLP-DIFTEL 469 (570)
T ss_dssp ETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG--EEC-SCCTTC
T ss_pred cccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc--cch-hhhhcc
Confidence 555556666666655544333 3455666666666666666655666666667777777777665311 111 234566
Q ss_pred ccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCC
Q 035512 298 EVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 298 ~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
++|+.|++++|++++..|..+..+++|++|++++|.+.+.++. .+..+++|+.|++++|++++..|.
T Consensus 470 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-----~~~~l~~L~~L~l~~N~~~~~~~~ 536 (570)
T 2z63_A 470 RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDCSCPR 536 (570)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTT-----TTTTCTTCCEEECCSSCBCCCTTT
T ss_pred cCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHH-----HhhcccCCcEEEecCCcccCCCcc
Confidence 6677777777777766677777777788888877777766654 466777888888888887776553
No 23
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.2e-32 Score=259.17 Aligned_cols=61 Identities=31% Similarity=0.436 Sum_probs=35.2
Q ss_pred cccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 299 VLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 299 ~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
.|+.|++++|+++ .+|..+..+++|++|++++|.+...+.. .+..+++|++|++++|++++
T Consensus 422 ~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~-----~~~~l~~L~~L~l~~N~~~c 482 (520)
T 2z7x_B 422 RIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDG-----IFDRLTSLQKIWLHTNPWDC 482 (520)
T ss_dssp TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTT-----TTTTCTTCCEEECCSSCBCC
T ss_pred cCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHH-----HhccCCcccEEECcCCCCcc
Confidence 4444566666665 3444444666666666666666544332 25556666666666666654
No 24
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=5.4e-32 Score=258.74 Aligned_cols=128 Identities=25% Similarity=0.369 Sum_probs=95.6
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..+..|..+++|++|++++|.+++..+.+|..+++|++|++++|.++ ..|.. .+++|++|+
T Consensus 51 ~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 127 (562)
T 3a79_B 51 PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLD 127 (562)
T ss_dssp CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEE
T ss_pred CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEE
Confidence 357888999999988777778889999999999999888777888888899999999988887 44444 788889999
Q ss_pred ccCCccccccC-hhhhcCCCCccEEEccCCccCccCCccCcCCCCC--cEEEeecccC
Q 035512 132 FTFNTLSGEIP-ANICSNLPFLEILSLQENMFHGAIPSNLSNCTYL--RILSLAYNDF 186 (372)
Q Consensus 132 l~~~~~~~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L--~~L~l~~~~~ 186 (372)
+++|.+. .++ ...+..+++|++|++++|.+... .+..++.| ++|++++|.+
T Consensus 128 Ls~N~l~-~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 128 LSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp CCSSCCS-BCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CCCCCcc-ccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9888887 433 23344788888888888877542 23333333 6666655544
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-32 Score=260.00 Aligned_cols=119 Identities=24% Similarity=0.193 Sum_probs=63.1
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCC-CCccccCCCCCCEEE
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGA-LPSFIFNKSSLQHLD 131 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~ 131 (372)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus 50 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~ 129 (549)
T 2z81_A 50 ANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129 (549)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEE
T ss_pred CcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEE
Confidence 4455555555555544445555555555555555555544444455555555555555555431 234455555566666
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLS 171 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~ 171 (372)
+++|...+.++...+..+++|++|++++|.+.+..+..+.
T Consensus 130 L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~ 169 (549)
T 2z81_A 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169 (549)
T ss_dssp EEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT
T ss_pred CCCCccccccCHhhhhcccccCeeeccCCcccccChhhhh
Confidence 5555533344444444566666666666666554444443
No 26
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.8e-32 Score=268.70 Aligned_cols=302 Identities=20% Similarity=0.233 Sum_probs=227.3
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCc-CCC-CCChhhhCCC-------CCCEEEcccccccCCCCc--c
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSG-SIPSAIFTTY-------TLKYVNLRQNQLSGALPS--F 120 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~-~~~~~~~~l~-------~L~~L~l~~~~~~~~~~~--~ 120 (372)
.++++.|++++|.+.+.+|..|..+++|++|++++|. +++ .+|..+..++ +|++|++++|.++ .+|. .
T Consensus 490 L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~ 568 (876)
T 4ecn_A 490 LKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASAS 568 (876)
T ss_dssp CTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHH
T ss_pred CCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhh
Confidence 5689999999999999999999999999999999998 886 6777666554 9999999999998 7777 8
Q ss_pred ccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCC-CcEEEeecccCccccCcchhCCC-
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTY-LRILSLAYNDFSGAIPREIGNLT- 198 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~~~~~~- 198 (372)
+..+++|++|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. ..|..+...+
T Consensus 569 l~~L~~L~~L~Ls~N~l~-~lp--~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~ 643 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVR-HLE--AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSV 643 (876)
T ss_dssp HTTCTTCCEEECTTSCCC-BCC--CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCS
T ss_pred hhcCCCCCEEECCCCCcc-cch--hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhcccc
Confidence 999999999999999998 888 4558999999999999988 77777888988 999999999887 5666665554
Q ss_pred -CCCeeeccCCccccccCccc---c--CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccC----
Q 035512 199 -KLKGLYLGANRLQGEIPREF---G--NLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFN---- 268 (372)
Q Consensus 199 -~L~~L~l~~~~~~~~~~~~l---~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---- 268 (372)
+|+.|++++|.+.+..|... . ..++|+.|++++|.+.......+..+++|++|++++|.+. .+|..+..
T Consensus 644 ~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~ 722 (876)
T 4ecn_A 644 YVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDG 722 (876)
T ss_dssp SCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTS
T ss_pred CCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccc
Confidence 38888888888876544322 2 2347788888888877443344457778888888888776 33333222
Q ss_pred ----cCCCCEEeccCCccccccCCCCCcCc-CccccccccccCCCccccCCCccccCCCCCCEEecCC------CccccC
Q 035512 269 ----VSKLKALKLYSNSLLGSLSSIPDFRL-PNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGD------NYLTSS 337 (372)
Q Consensus 269 ----~~~L~~L~l~~~~~~~~~~~~~~~~~-~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~------n~~~~~ 337 (372)
+++|+.|++++|.+ ..++.... ..+++|+.|++++|.+++ +|..+..+++|+.|+|++ |.+.+.
T Consensus 723 ~l~nl~~L~~L~Ls~N~L----~~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 723 NYKNTYLLTTIDLRFNKL----TSLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CCTTGGGCCEEECCSSCC----CCCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred cccccCCccEEECCCCCC----ccchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccccccc
Confidence 23788888888877 33443222 256666677888887775 566677778888887765 555555
Q ss_pred CCCCcccccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 338 TPELSFLSSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 338 ~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
.|. .+..+++|+.|++++|++ +.+|..+
T Consensus 798 ip~-----~l~~L~~L~~L~Ls~N~L-~~Ip~~l 825 (876)
T 4ecn_A 798 WPT-----GITTCPSLIQLQIGSNDI-RKVDEKL 825 (876)
T ss_dssp CCT-----TGGGCSSCCEEECCSSCC-CBCCSCC
T ss_pred ChH-----HHhcCCCCCEEECCCCCC-CccCHhh
Confidence 554 466777778888887777 4466654
No 27
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.1e-31 Score=239.52 Aligned_cols=282 Identities=27% Similarity=0.398 Sum_probs=174.7
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..+ +..+++|++|++++|.+++ + +.+..+++|++|++++|.+....+ +..+++|++|+
T Consensus 65 ~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~-~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~ 138 (347)
T 4fmz_A 65 LTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-I-SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138 (347)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-C-GGGTTCTTCSEEECTTSCCCCCGG--GTTCTTCCEEE
T ss_pred cCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-c-hHHcCCCcCCEEECcCCcccCchh--hccCCceeEEE
Confidence 4456666666666653322 6666666666666666653 2 346666666666666666653322 55666666666
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|......+. +..+++|++|++++|.+.+..+ +..+++|++|++++|.+....+ +..+++|+.+++++|.+.
T Consensus 139 l~~n~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~ 212 (347)
T 4fmz_A 139 LGANHNLSDLSP--LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQIT 212 (347)
T ss_dssp CTTCTTCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred CCCCCCcccccc--hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCC
Confidence 666644423222 3356666666666666553322 5566667777777666653322 566667777777776665
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+..+ +..+++|++|++++|.+....+ +..+++|++|++++|.+++. ..+..+++|++|++++|.+. .++
T Consensus 213 ~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~----~~~- 281 (347)
T 4fmz_A 213 DITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQIS----DIS- 281 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC----CCG-
T ss_pred CCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccC----CCh-
Confidence 4322 5667777777777777665433 66777777777777776643 35667777777777777663 222
Q ss_pred cCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCccc
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLD 364 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 364 (372)
.+..+++|+.|++++|.+++..+..+..+++|++|++++|++++..+ +..+++|++|++++|+++
T Consensus 282 -~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-------~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 282 -VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP-------LASLSKMDSADFANQVIK 346 (347)
T ss_dssp -GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG-------GGGCTTCSEESSSCC---
T ss_pred -hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC-------hhhhhccceeehhhhccc
Confidence 34566666777777777776666667777777777777777665443 456677777777777765
No 28
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=5e-31 Score=235.31 Aligned_cols=289 Identities=20% Similarity=0.262 Sum_probs=232.6
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.++++++.++ .+|..+. +++++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 4667888888886 4555443 689999999999987667788999999999999999987778889999999999999
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc--ccCcchhCCCCCCeeeccCCccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG--AIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+|.+. .+|..++ ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP---KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC---TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc---ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99987 6776553 789999999999887777778889999999999998753 45667888999999999999887
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
. ++..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+ ..++.
T Consensus 185 ~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~lp~ 257 (330)
T 1xku_A 185 T-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL----VKVPG 257 (330)
T ss_dssp S-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCC----SSCCT
T ss_pred c-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcC----ccCCh
Confidence 4 343332 7899999999999888888899999999999999999877777889999999999999988 34443
Q ss_pred cCcCccccccccccCCCccccCCCccccC------CCCCCEEecCCCcccc--CCCCCcccccccCCCCCcEEeCcCCc
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGN------LRNLERLNLGDNYLTS--STPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
.+..+++|+.|++++|.+++..+..|.. .+.++.|++++|++.. ..+. .+..+++++.+++++|+
T Consensus 258 -~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~-----~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 258 -GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPS-----TFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp -TTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGG-----GGTTCCCGGGEEC----
T ss_pred -hhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcc-----ccccccceeEEEecccC
Confidence 3567778888899999998766665543 4788999999998764 2332 57778899999999885
No 29
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=2.8e-31 Score=238.68 Aligned_cols=286 Identities=27% Similarity=0.400 Sum_probs=240.8
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|+++++.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.++.. ..+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTCSEEE
T ss_pred cccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--hHHcCCCcCCEEE
Confidence 5689999999999974 44 38899999999999999984 444 89999999999999998753 4688999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+. .++. +..+++|+.|++++|...... ..+..+++|++|++++|.+....+ +..+++|+.|++++|.+.
T Consensus 117 l~~n~i~-~~~~--~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~ 190 (347)
T 4fmz_A 117 LNEDNIS-DISP--LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIE 190 (347)
T ss_dssp CTTSCCC-CCGG--GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCC
T ss_pred CcCCccc-Cchh--hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccc
Confidence 9999987 5554 558999999999999655443 348899999999999998875433 789999999999999987
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+..+ +..+++|+.+++++|.+....+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+. .+
T Consensus 191 ~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~----~~-- 258 (347)
T 4fmz_A 191 DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQIS----DI-- 258 (347)
T ss_dssp CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC----CC--
T ss_pred cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccC----CC--
Confidence 5433 7889999999999999876544 7889999999999999985543 889999999999999883 33
Q ss_pred cCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCC
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILP 368 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p 368 (372)
..+..+++|+.|++++|.+++. ..+..+++|++|++++|.+.+..+. .+..+++|++|++++|++++..|
T Consensus 259 ~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~-----~l~~l~~L~~L~L~~n~l~~~~~ 328 (347)
T 4fmz_A 259 NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME-----VIGGLTNLTTLFLSQNHITDIRP 328 (347)
T ss_dssp GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH-----HHHTCTTCSEEECCSSSCCCCGG
T ss_pred hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh-----HhhccccCCEEEccCCccccccC
Confidence 2466788888889999999864 4588899999999999999877665 57889999999999999998655
No 30
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.5e-31 Score=251.93 Aligned_cols=140 Identities=20% Similarity=0.263 Sum_probs=117.0
Q ss_pred cCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccc--ccCccccCcCCCCEEeccCCccccccCCCCCcCcCc
Q 035512 219 GNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVG--TIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPN 296 (372)
Q Consensus 219 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 296 (372)
..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+.++++|++|++++|.+.+. ++...+..
T Consensus 321 ~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~---l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYD---EKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCC---GGGCSCCC
T ss_pred hhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcc---cccchhcc
Confidence 577899999999999998888899999999999999999986 4557789999999999999998431 44445667
Q ss_pred cccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCC
Q 035512 297 LEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKT 370 (372)
Q Consensus 297 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 370 (372)
+++|+.|++++|.+++..+..+. ++|+.|++++|.+...+.. +..+++|++|++++|++++ +|..
T Consensus 398 l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~~ip~~------~~~l~~L~~L~L~~N~l~~-l~~~ 462 (520)
T 2z7x_B 398 TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIKSIPKQ------VVKLEALQELNVASNQLKS-VPDG 462 (520)
T ss_dssp CTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCCCCCGG------GGGCTTCCEEECCSSCCCC-CCTT
T ss_pred CccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCcccccchh------hhcCCCCCEEECCCCcCCc-cCHH
Confidence 78888889999999876665553 7999999999999854443 5588999999999999996 5554
No 31
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=2.5e-31 Score=237.49 Aligned_cols=288 Identities=22% Similarity=0.269 Sum_probs=234.9
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.++++++.++ .+|..+ .+++++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 4677888888887 556544 3689999999999987677789999999999999999987778889999999999999
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc--ccCcchhCCCCCCeeeccCCccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG--AIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+|.+. .+|..++ ++|++|++++|.+....+..+..+++|++|++++|.+.. ..+..+..+ +|+.|++++|.+.
T Consensus 111 ~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~ 185 (332)
T 2ft3_A 111 KNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLT 185 (332)
T ss_dssp SSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCS
T ss_pred CCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCC
Confidence 99988 7776554 789999999999987777778899999999999998863 455566666 8999999999987
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+ +|..+. ++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|++ ..++.
T Consensus 186 ~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~lp~ 258 (332)
T 2ft3_A 186 G-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKL----SRVPA 258 (332)
T ss_dssp S-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCC----CBCCT
T ss_pred c-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcC----eecCh
Confidence 5 443332 6899999999999887778899999999999999999877777899999999999999988 34444
Q ss_pred cCcCccccccccccCCCccccCCCccccC------CCCCCEEecCCCccc--cCCCCCcccccccCCCCCcEEeCcCCc
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGN------LRNLERLNLGDNYLT--SSTPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~------~~~L~~L~l~~n~~~--~~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
.+..+++|+.|++++|.+++..+..+.. .++|+.|++++|++. ...+. .+..+++|+.|++++|.
T Consensus 259 -~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~-----~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 259 -GLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA-----TFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp -TGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG-----GGTTBCCSTTEEC----
T ss_pred -hhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc-----cccccchhhhhhccccc
Confidence 3667888888899999998776666654 467899999999976 34443 57888999999999885
No 32
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.98 E-value=3.7e-31 Score=264.02 Aligned_cols=301 Identities=23% Similarity=0.234 Sum_probs=240.6
Q ss_pred CCCcEEEEEeCCCCccccc-cccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCcc--ccCCCCC
Q 035512 51 HRHRVTVLNISGLNLTGTI-PSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSF--IFNKSSL 127 (372)
Q Consensus 51 ~~~~l~~l~l~~~~l~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~--l~~l~~L 127 (372)
..++++.|++++|...+.+ +..|..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+.. +..+++|
T Consensus 46 ~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L 125 (844)
T 3j0a_A 46 FLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKAL 125 (844)
T ss_dssp SCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSC
T ss_pred ccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCC
Confidence 3568999999999655454 788999999999999999999888999999999999999999998755554 8899999
Q ss_pred CEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCC--CCCcEEEeecccCccccCcchhCCCC------
Q 035512 128 QHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNC--TYLRILSLAYNDFSGAIPREIGNLTK------ 199 (372)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~~~~~~~------ 199 (372)
++|++++|.+.+..+...+..+++|++|++++|.+.+..+..+..+ ++|+.|++++|.+....+..+..+++
T Consensus 126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~ 205 (844)
T 3j0a_A 126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMV 205 (844)
T ss_dssp CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCC
T ss_pred CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCc
Confidence 9999999999855554556689999999999999887777777766 78899999988887666555555544
Q ss_pred CCeeeccCCccccccCcccc------------------------------------C--CCCCCEEEccCCcccccCccc
Q 035512 200 LKGLYLGANRLQGEIPREFG------------------------------------N--LAVLELMSLAGNNLQEKIPPE 241 (372)
Q Consensus 200 L~~L~l~~~~~~~~~~~~l~------------------------------------~--~~~L~~L~l~~~~~~~~~~~~ 241 (372)
|+.|++++|.+.+..+..+. + .++|+.|++++|.+....+..
T Consensus 206 L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~ 285 (844)
T 3j0a_A 206 LEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRV 285 (844)
T ss_dssp BSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCC
T ss_pred eeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhh
Confidence 88888888865433322221 1 267899999999988888888
Q ss_pred ccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCC
Q 035512 242 IGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNL 321 (372)
Q Consensus 242 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 321 (372)
+..+++|++|++++|.+.+..+..|.++++|++|++++|.+ ..+....|..++.|+.|++++|.+....+..+..+
T Consensus 286 ~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l 361 (844)
T 3j0a_A 286 FETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL----GELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFL 361 (844)
T ss_dssp SSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC----SCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSC
T ss_pred hhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC----CccCHHHhcCCCCCCEEECCCCCCCccChhhhcCC
Confidence 88999999999999999888888899999999999999988 44555567788888888999999887777788889
Q ss_pred CCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 322 RNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 322 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
++|+.|++++|.+.+.. .+++|+.|++++|+++.
T Consensus 362 ~~L~~L~Ls~N~l~~i~----------~~~~L~~L~l~~N~l~~ 395 (844)
T 3j0a_A 362 EKLQTLDLRDNALTTIH----------FIPSIPDIFLSGNKLVT 395 (844)
T ss_dssp CCCCEEEEETCCSCCCS----------SCCSCSEEEEESCCCCC
T ss_pred CCCCEEECCCCCCCccc----------CCCCcchhccCCCCccc
Confidence 99999999999876432 24555555555555553
No 33
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.98 E-value=8.8e-31 Score=250.37 Aligned_cols=146 Identities=23% Similarity=0.264 Sum_probs=121.8
Q ss_pred EEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccC
Q 035512 55 VTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF 134 (372)
Q Consensus 55 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (372)
.+.++++++.+++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|.++++|++|++++
T Consensus 33 ~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 109 (562)
T 3a79_B 33 ESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSH 109 (562)
T ss_dssp CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTT
T ss_pred CcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCC
Confidence 3899999999984 665443 7999999999999977778999999999999999999988888999999999999999
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCcc-CCccCcCCCCCcEEEeecccCccccCcchhCCCCC--CeeeccCCcc
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGA-IPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL--KGLYLGANRL 210 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~ 210 (372)
|.+. .+|.. .+++|++|++++|.+.+. .+..+.++++|++|++++|.+... .+..++++ +.|++++|.+
T Consensus 110 N~l~-~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l 181 (562)
T 3a79_B 110 NRLQ-NISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSY 181 (562)
T ss_dssp SCCC-EECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSC
T ss_pred CcCC-ccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccc
Confidence 9998 77776 699999999999999864 457899999999999999988643 23333333 5555555544
No 34
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.98 E-value=1.4e-30 Score=252.68 Aligned_cols=136 Identities=22% Similarity=0.156 Sum_probs=119.1
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
+..+++|++++|.|++..+..|..+++|++|+|++|.+++..+.+|.++++|++|++++|+++...+..|.++++|++|+
T Consensus 51 p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~ 130 (635)
T 4g8a_A 51 PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV 130 (635)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence 35799999999999977788999999999999999999977778899999999999999999877677899999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCcc-CCccCcCCCCCcEEEeecccCcc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGA-IPSNLSNCTYLRILSLAYNDFSG 188 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~ 188 (372)
+++|.+. .++...+..+++|++|++++|.+.+. .+..+..++.|++|++++|.+.+
T Consensus 131 Ls~N~l~-~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~ 187 (635)
T 4g8a_A 131 AVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS 187 (635)
T ss_dssp CTTSCCC-CSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCE
T ss_pred CCCCcCC-CCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccc
Confidence 9999998 67776677899999999999988754 56677888999999998876653
No 35
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.97 E-value=6.7e-30 Score=228.04 Aligned_cols=283 Identities=21% Similarity=0.271 Sum_probs=236.9
Q ss_pred CCCcccceeecC---------CCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcc
Q 035512 39 SFCNWTGVACDV---------HRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLR 109 (372)
Q Consensus 39 ~~~~~~~~~~~~---------~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~ 109 (372)
..|+|+.+.|.. ..+.++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 c~c~l~~l~~~~~~l~~lp~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 29 CQCHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp CEEETTEEECTTSCCCSCCCSCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CcCCCeEEEecCCCccccCccCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 457788888752 24579999999999998777789999999999999999997779999999999999999
Q ss_pred cccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCc--cCCccCcCCCCCcEEEeecccCc
Q 035512 110 QNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHG--AIPSNLSNCTYLRILSLAYNDFS 187 (372)
Q Consensus 110 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~ 187 (372)
+|.++ ..+..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.+.
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~ 184 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT 184 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc
Confidence 99988 4454443 79999999999998 7777777799999999999998864 56677889999999999999987
Q ss_pred cccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCcccc
Q 035512 188 GAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIF 267 (372)
Q Consensus 188 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 267 (372)
. .+..+ .++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.++ .+|..+.
T Consensus 185 ~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~ 260 (330)
T 1xku_A 185 T-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLA 260 (330)
T ss_dssp S-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTT
T ss_pred c-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhc
Confidence 4 33333 278999999999999888889999999999999999998887778999999999999999998 6788899
Q ss_pred CcCCCCEEeccCCccccccCCCCCcCcC------ccccccccccCCCcccc--CCCccccCCCCCCEEecCCCc
Q 035512 268 NVSKLKALKLYSNSLLGSLSSIPDFRLP------NLEVLLLWDLENNSFSG--FIPNTLGNLRNLERLNLGDNY 333 (372)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~------~l~~L~~l~l~~~~~~~--~~~~~~~~~~~L~~L~l~~n~ 333 (372)
.+++|++|++++|.+. .++...|. ....++.+++++|.+.. ..+..+..+.+++.+++++|+
T Consensus 261 ~l~~L~~L~l~~N~i~----~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 261 DHKYIQVVYLHNNNIS----AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp TCSSCCEEECCSSCCC----CCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cCCCcCEEECCCCcCC----ccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 9999999999999984 44433332 23567777999998763 456788999999999999884
No 36
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.97 E-value=4.5e-31 Score=233.52 Aligned_cols=253 Identities=29% Similarity=0.396 Sum_probs=168.4
Q ss_pred CCCCEEECCCCcCCC--CCChhhhCCCCCCEEEccc-ccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 77 SSLQSLNLSFNRLSG--SIPSAIFTTYTLKYVNLRQ-NQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
.++++|+++++.+.+ .+|..+.++++|++|++++ |.+.+..|..+..+++|++|++++|.+.+.+|..+. .+++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~-~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLS-QIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGG-GCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHh-CCCCCC
Confidence 478888888888887 6788888888888888884 777777777777778888888877777655555443 566666
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCc
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (372)
+|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..++ +.|+.|++++|.
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~-----------------------~~L~~L~L~~N~ 185 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMTISRNR 185 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCC-----------------------TTCCEEECCSSE
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhh-----------------------hcCcEEECcCCe
Confidence 666666666555555555555555555555555544444444444 044455555544
Q ss_pred ccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccC
Q 035512 234 LQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF 313 (372)
Q Consensus 234 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 313 (372)
+....|..+..+. |++|++++|.+.+..+..+.++++|+.|++++|.+.+.... +..+++|+.|++++|.+++.
T Consensus 186 l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-----~~~l~~L~~L~Ls~N~l~~~ 259 (313)
T 1ogq_A 186 LTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-----VGLSKNLNGLDLRNNRIYGT 259 (313)
T ss_dssp EEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG-----CCCCTTCCEEECCSSCCEEC
T ss_pred eeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc-----ccccCCCCEEECcCCcccCc
Confidence 4444444444444 56666666655555555566666666666666665322111 33455666668888888777
Q ss_pred CCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCc-ccc
Q 035512 314 IPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNP-LDG 365 (372)
Q Consensus 314 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-l~~ 365 (372)
+|..+..+++|++|++++|.+++..|. ...+++|+.|++++|+ +.+
T Consensus 260 ~p~~l~~l~~L~~L~Ls~N~l~~~ip~------~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQ------GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp CCGGGGGCTTCCEEECCSSEEEEECCC------STTGGGSCGGGTCSSSEEES
T ss_pred CChHHhcCcCCCEEECcCCcccccCCC------CccccccChHHhcCCCCccC
Confidence 788888888999999999998877776 3677888899999998 444
No 37
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=7.3e-30 Score=238.40 Aligned_cols=284 Identities=30% Similarity=0.416 Sum_probs=147.3
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.+++++|++++|.+++..+ +..+++|++|++++|.+.+. +. +.++++|++|++++|.+++.. .+..+++|++|+
T Consensus 67 l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~L~~n~l~~~~--~~~~l~~L~~L~ 140 (466)
T 1o6v_A 67 LNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-TP-LANLTNLTGLTLFNNQITDID--PLKNLTNLNRLE 140 (466)
T ss_dssp CTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEE
T ss_pred hcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccC-hh-hcCCCCCCEEECCCCCCCCCh--HHcCCCCCCEEE
Confidence 5578888888888875443 77888888888888877743 32 777788888888877776442 266777777777
Q ss_pred ccCCccccccCh-------------------hhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCc
Q 035512 132 FTFNTLSGEIPA-------------------NICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPR 192 (372)
Q Consensus 132 l~~~~~~~~~~~-------------------~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 192 (372)
+++|.+. .++. ..+..+++|+.|++++|.+... ..+..+++|++|++++|.+.+..+
T Consensus 141 l~~n~l~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~- 216 (466)
T 1o6v_A 141 LSSNTIS-DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP- 216 (466)
T ss_dssp EEEEEEC-CCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG-
T ss_pred CCCCccC-CChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc-
Confidence 7777665 2221 0022444555555555554322 224445555555555554443222
Q ss_pred chhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCC
Q 035512 193 EIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKL 272 (372)
Q Consensus 193 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L 272 (372)
+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|
T Consensus 217 -~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L 289 (466)
T 1o6v_A 217 -LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTAL 289 (466)
T ss_dssp -GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTC
T ss_pred -ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCcc
Confidence 33444455555555544321 234444555555555554443222 4444455555555554443221 4444445
Q ss_pred CEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCC--------------------ccccCCCCCCEEecCCC
Q 035512 273 KALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIP--------------------NTLGNLRNLERLNLGDN 332 (372)
Q Consensus 273 ~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~--------------------~~~~~~~~L~~L~l~~n 332 (372)
++|++++|.+.+ ++. +..+++|+.|++++|.+++..+ ..+..+++|+.|++++|
T Consensus 290 ~~L~L~~n~l~~----~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n 363 (466)
T 1o6v_A 290 TNLELNENQLED----ISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN 363 (466)
T ss_dssp SEEECCSSCCSC----CGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS
T ss_pred CeEEcCCCcccC----chh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC
Confidence 555554444421 111 2233333444444444443222 23444455555555555
Q ss_pred ccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 333 YLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
++.+..+ +..+++|+.|++++|++++
T Consensus 364 ~l~~~~~-------~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 364 QISDLTP-------LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCCBCGG-------GTTCTTCCEEECCCEEEEC
T ss_pred ccCccch-------hhcCCCCCEEeccCCcccC
Confidence 4443332 3445556666666666554
No 38
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.97 E-value=5.1e-30 Score=228.98 Aligned_cols=283 Identities=20% Similarity=0.269 Sum_probs=235.7
Q ss_pred CCCCcccceeecC---------CCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEc
Q 035512 38 ISFCNWTGVACDV---------HRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNL 108 (372)
Q Consensus 38 ~~~~~~~~~~~~~---------~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (372)
.+.|+|+.+.|.. ..++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 30 ~c~c~l~~l~~~~~~l~~ip~~~~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 109 (332)
T 2ft3_A 30 GCHCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYI 109 (332)
T ss_dssp SCEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEEC
T ss_pred CCcccCCEEECCCCCccccCCCCCCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEEC
Confidence 3457888888752 2357999999999999777888999999999999999999777889999999999999
Q ss_pred ccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCc--cCCccCcCCCCCcEEEeecccC
Q 035512 109 RQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHG--AIPSNLSNCTYLRILSLAYNDF 186 (372)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~ 186 (372)
++|.++ ..|..+. ++|++|++++|.+. .++...+..+++|+.|++++|.+.. ..+..+..+ +|++|++++|.+
T Consensus 110 ~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 110 SKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 999998 4455444 89999999999998 7777777789999999999999863 566677777 999999999998
Q ss_pred ccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccc
Q 035512 187 SGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAI 266 (372)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~ 266 (372)
.. .+..+. ++|+.|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+. .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 85 343332 78999999999998877788999999999999999999887888999999999999999998 677789
Q ss_pred cCcCCCCEEeccCCccccccCCCCCcCcCc------cccccccccCCCccc--cCCCccccCCCCCCEEecCCCc
Q 035512 267 FNVSKLKALKLYSNSLLGSLSSIPDFRLPN------LEVLLLWDLENNSFS--GFIPNTLGNLRNLERLNLGDNY 333 (372)
Q Consensus 267 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~------l~~L~~l~l~~~~~~--~~~~~~~~~~~~L~~L~l~~n~ 333 (372)
..+++|+.|++++|.+.+ ++...|.. ...|+.+++++|.+. ...+.++..+++|+.+++++|.
T Consensus 261 ~~l~~L~~L~l~~N~l~~----~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITK----VGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp GGCTTCCEEECCSSCCCB----CCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hcCccCCEEECCCCCCCc----cChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 999999999999999843 33333322 355677799999886 5667789999999999999885
No 39
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.97 E-value=1.9e-29 Score=235.62 Aligned_cols=297 Identities=27% Similarity=0.366 Sum_probs=185.9
Q ss_pred CCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCC-------------
Q 035512 51 HRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGAL------------- 117 (372)
Q Consensus 51 ~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~------------- 117 (372)
..++++.|++++|.+++..+ +..+++|++|++++|.+++. + .+..+++|++|++++|.+.+..
T Consensus 88 ~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l 163 (466)
T 1o6v_A 88 NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDI-D-PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSF 163 (466)
T ss_dssp TCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEE
T ss_pred ccccCCEEECCCCccccChh--hcCCCCCCEEECCCCCCCCC-h-HHcCCCCCCEEECCCCccCCChhhccCCcccEeec
Confidence 35689999999999885544 88999999999999988743 3 2788888888888888765421
Q ss_pred ------CccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccC
Q 035512 118 ------PSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIP 191 (372)
Q Consensus 118 ------~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 191 (372)
...+..+++|++|++++|.+. .++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+...
T Consensus 164 ~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 236 (466)
T 1o6v_A 164 GNQVTDLKPLANLTTLERLDISSNKVS-DISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI-- 236 (466)
T ss_dssp EESCCCCGGGTTCTTCCEEECCSSCCC-CCGG--GGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--
T ss_pred CCcccCchhhccCCCCCEEECcCCcCC-CChh--hccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--
Confidence 112456677778888877765 3332 3356777777777776654332 34455555555555554422
Q ss_pred cchhCCC----------------------CCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCC
Q 035512 192 REIGNLT----------------------KLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLE 249 (372)
Q Consensus 192 ~~~~~~~----------------------~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 249 (372)
..+..++ +|+.|++++|.+.+..+ +..+++|+.|++++|.+....+ +..+++|+
T Consensus 237 ~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 312 (466)
T 1o6v_A 237 GTLASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLT 312 (466)
T ss_dssp GGGGGCTTCSEEECCSSCCCCCGGGTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCS
T ss_pred hhhhcCCCCCEEECCCCccccchhhhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCC
Confidence 2334444 44555555444443221 4455555555555555544322 55566666
Q ss_pred EEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEec
Q 035512 250 ELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNL 329 (372)
Q Consensus 250 ~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l 329 (372)
+|++++|.+.+..+ +..+++|++|++++|++.+ + ..+..+++|+.|++++|++++..| +..+++|+.|++
T Consensus 313 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~----~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l 382 (466)
T 1o6v_A 313 YLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD----V--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGL 382 (466)
T ss_dssp EEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCC----C--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEEC
T ss_pred EEECcCCcCCCchh--hccCccCCEeECCCCccCC----c--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEec
Confidence 66666666654433 5566777777777776632 2 245678888888999999987766 789999999999
Q ss_pred CCCccccCCCCCcccccc-cCCCCCcEEeCcCCcccc----cCCCCCC
Q 035512 330 GDNYLTSSTPELSFLSSL-SNFKSLTHIVLSNNPLDG----ILPKTFF 372 (372)
Q Consensus 330 ~~n~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~----~~p~~~~ 372 (372)
++|.+++.+.....-..+ ..+..+..+.+....++. ..|+++|
T Consensus 383 ~~n~~~~~p~~~~~~~~ip~~~~~~~~~~~~~~~is~~g~~~~~~~~w 430 (466)
T 1o6v_A 383 NDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430 (466)
T ss_dssp CCEEEECCCBCCCSEEEEECCCBCTTSCBCCCSEESTTCEEETTEEEE
T ss_pred cCCcccCCchhhcccceecccccccCCCeecCceecCCcEEeCCceEE
Confidence 999998865442110011 112334444455554543 3676665
No 40
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.97 E-value=5.1e-30 Score=244.59 Aligned_cols=184 Identities=18% Similarity=0.134 Sum_probs=156.6
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
+++++|++++|.+++..+..|..+++|++|++++|.+++..+.+|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 105 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL 105 (549)
T ss_dssp TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence 58999999999999888889999999999999999999777889999999999999999999777777999999999999
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCcc-CccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMF-HGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
++|.+.+......+..+++|++|++++|.. ....+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.
T Consensus 106 s~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~ 185 (549)
T 2z81_A 106 MGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185 (549)
T ss_dssp TTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST
T ss_pred CCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCccc
Confidence 999987422223455899999999999984 4344467899999999999999998888888999999999999999876
Q ss_pred cccCccccCCCCCCEEEccCCcccc
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQE 236 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~ 236 (372)
......+..+++|+.|++++|.+..
T Consensus 186 ~~~~~~~~~l~~L~~L~L~~n~l~~ 210 (549)
T 2z81_A 186 FLLEIFADILSSVRYLELRDTNLAR 210 (549)
T ss_dssp THHHHHHHSTTTBSEEEEESCBCTT
T ss_pred ccchhhHhhcccccEEEccCCcccc
Confidence 4333334568899999999988765
No 41
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.97 E-value=1.7e-29 Score=230.66 Aligned_cols=314 Identities=18% Similarity=0.168 Sum_probs=221.4
Q ss_pred ccCCCCCCCCCCc-ccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEc
Q 035512 30 FAKNWNTNISFCN-WTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNL 108 (372)
Q Consensus 30 ~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l 108 (372)
++ .|....+||. |.+..|. .+.+.+............-..++++++|+++++.++...+..+..+++|++|++
T Consensus 3 ~~-~~~~~~~C~~~~~~~~c~-----~~~~~i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L 76 (390)
T 3o6n_A 3 VK-PRQPEYKCIDSNLQYDCV-----FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNL 76 (390)
T ss_dssp -----CCEECBCC------EE-----EESCEECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEEC
T ss_pred cC-CCCCccceehhhhhhccc-----eeeeeeecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEEC
Confidence 44 7777777665 5555553 222333322222111111234689999999999998554556789999999999
Q ss_pred ccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc
Q 035512 109 RQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG 188 (372)
Q Consensus 109 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 188 (372)
++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+.++++|++|++++|.+..
T Consensus 77 ~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~ 155 (390)
T 3o6n_A 77 NDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155 (390)
T ss_dssp TTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCB
T ss_pred CCCcccccChhhccCCCCcCEEECCCCCCC-cCCHHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCc
Confidence 999998777778999999999999999998 5666666689999999999999986666667899999999999999987
Q ss_pred ccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccC-cc---------------cccCCCCCCEEE
Q 035512 189 AIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKI-PP---------------EIGNLRNLEELN 252 (372)
Q Consensus 189 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~---------------~l~~~~~L~~L~ 252 (372)
..+..+..+++|+.|++++|.+.+.. +..+++|+.+++++|.+.... +. .....++|++|+
T Consensus 156 ~~~~~~~~l~~L~~L~l~~n~l~~~~---~~~l~~L~~L~l~~n~l~~~~~~~~L~~L~l~~n~l~~~~~~~~~~L~~L~ 232 (390)
T 3o6n_A 156 IEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILK 232 (390)
T ss_dssp CCTTTTSSCTTCCEEECCSSCCSBCC---GGGCTTCSEEECCSSCCSEEECCSSCSEEECCSSCCCEEECCCCSSCCEEE
T ss_pred cChhhccCCCCCCEEECCCCcCCccc---cccccccceeecccccccccCCCCcceEEECCCCeeeeccccccccccEEE
Confidence 77778999999999999999887542 344555555555555443210 00 011235677777
Q ss_pred ccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCC
Q 035512 253 LGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDN 332 (372)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 332 (372)
+++|.+++. ..+..+++|++|++++|.+. ......+..+++|+.|++++|++++ ++..+..+++|++|++++|
T Consensus 233 l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~----~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n 305 (390)
T 3o6n_A 233 LQHNNLTDT--AWLLNYPGLVEVDLSYNELE----KIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHN 305 (390)
T ss_dssp CCSSCCCCC--GGGGGCTTCSEEECCSSCCC----EEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSS
T ss_pred CCCCCCccc--HHHcCCCCccEEECCCCcCC----CcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCC
Confidence 777777643 46777888888888888773 3334455667777777888888775 3445567788888888888
Q ss_pred ccccCCCCCcccccccCCCCCcEEeCcCCccccc
Q 035512 333 YLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 366 (372)
.+...++ .+..+++|+.|++++|++++.
T Consensus 306 ~l~~~~~------~~~~l~~L~~L~L~~N~i~~~ 333 (390)
T 3o6n_A 306 HLLHVER------NQPQFDRLENLYLDHNSIVTL 333 (390)
T ss_dssp CCCCCGG------GHHHHTTCSEEECCSSCCCCC
T ss_pred cceecCc------cccccCcCCEEECCCCcccee
Confidence 8765443 356678888888888888764
No 42
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.97 E-value=6.9e-30 Score=230.07 Aligned_cols=290 Identities=24% Similarity=0.262 Sum_probs=203.0
Q ss_pred CCCCCCCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc
Q 035512 33 NWNTNISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ 112 (372)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (372)
.|......|.|.++ .+.+++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 22 ~~~~~~~~C~~~~~-----------c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 22 SSNQASLSCDRNGI-----------CKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -----CCEECTTSE-----------EECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred CCCccCCCCCCCeE-----------eeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCc
Confidence 34444556666653 355677776 5565444 589999999999986666689999999999999999
Q ss_pred ccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCC-ccCcCCCCCcEEEeecc-cCcccc
Q 035512 113 LSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIP-SNLSNCTYLRILSLAYN-DFSGAI 190 (372)
Q Consensus 113 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~-~~~~~~ 190 (372)
+++..+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+..... ..+..+++|++|++++| .+....
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~ 166 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQ 166 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCS-SCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCC-cCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccC
Confidence 99877888999999999999999998 7888877789999999999999885544 47888999999999988 466555
Q ss_pred CcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCcccc---
Q 035512 191 PREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIF--- 267 (372)
Q Consensus 191 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~--- 267 (372)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.......+..+++|++|++++|.+.+..+..+.
T Consensus 167 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~ 246 (353)
T 2z80_A 167 RKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGE 246 (353)
T ss_dssp TTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------
T ss_pred HHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccccccc
Confidence 66778888888888888888777777788888888888888877544434445567788888888777654333222
Q ss_pred CcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccc
Q 035512 268 NVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSL 347 (372)
Q Consensus 268 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l 347 (372)
..+.++.++++++.+ +++.+. .+|..+..+++|++|++++|.+...+.. .+
T Consensus 247 ~~~~l~~l~L~~~~l-----------------------~~~~l~-~l~~~l~~l~~L~~L~Ls~N~l~~i~~~-----~~ 297 (353)
T 2z80_A 247 TNSLIKKFTFRNVKI-----------------------TDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDG-----IF 297 (353)
T ss_dssp CCCCCCEEEEESCBC-----------------------CHHHHH-HHHHHHHTCTTCCEEECCSSCCCCCCTT-----TT
T ss_pred ccchhhccccccccc-----------------------cCcchh-hhHHHHhcccCCCEEECCCCCCCccCHH-----HH
Confidence 223344444433332 222222 2344556666677777777666644433 24
Q ss_pred cCCCCCcEEeCcCCccccc
Q 035512 348 SNFKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 348 ~~~~~L~~L~l~~~~l~~~ 366 (372)
..+++|++|++++|++.+.
T Consensus 298 ~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 298 DRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp TTCTTCCEEECCSSCBCCC
T ss_pred hcCCCCCEEEeeCCCccCc
Confidence 5666677777777766653
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=6.4e-28 Score=223.85 Aligned_cols=276 Identities=19% Similarity=0.212 Sum_probs=167.9
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|+++++.+++. | .+..+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|+
T Consensus 41 l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~ 112 (457)
T 3bz5_A 41 LATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLN 112 (457)
T ss_dssp HTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEE
Confidence 34677777777777643 3 467777777777777777643 2 66777777777777777643 2 66677777777
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+. .++ +..+++|++|++++|.+.+. .+..+++|++|++++|...+.. .+..+++|+.|++++|.++
T Consensus 113 L~~N~l~-~l~---~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 113 CDTNKLT-KLD---VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CCSSCCS-CCC---CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCCcCC-eec---CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 7777766 343 34677777777777776653 2556666666666666432222 3455666666666666665
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+. + +..+++|+.|++++|.+... .+..+++|++|++++|++++ +| +..+++|+.|++++|.+.+ ++.
T Consensus 184 ~l-~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~----~~~ 250 (457)
T 3bz5_A 184 EL-D--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE----LDV 250 (457)
T ss_dssp CC-C--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC----CCC
T ss_pred ee-c--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC----cCH
Confidence 42 2 55566666666666665543 25555666666666666654 23 5556666666666665532 111
Q ss_pred cCc-----------------------------CccccccccccCCCccccCCCc--------cccCCCCCCEEecCCCcc
Q 035512 292 FRL-----------------------------PNLEVLLLWDLENNSFSGFIPN--------TLGNLRNLERLNLGDNYL 334 (372)
Q Consensus 292 ~~~-----------------------------~~l~~L~~l~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~n~~ 334 (372)
..+ ..+++|+.|++++|...+.+|. .+..+++|++|++++|.+
T Consensus 251 ~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l 330 (457)
T 3bz5_A 251 STLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTEL 330 (457)
T ss_dssp TTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCC
T ss_pred HHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCcc
Confidence 122 2334555556666654322221 245566777777777776
Q ss_pred ccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 335 TSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 335 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
++.. +..+++|+.|++++|++++
T Consensus 331 ~~l~--------l~~l~~L~~L~l~~N~l~~ 353 (457)
T 3bz5_A 331 TELD--------VSHNTKLKSLSCVNAHIQD 353 (457)
T ss_dssp SCCC--------CTTCTTCSEEECCSSCCCB
T ss_pred cccc--------cccCCcCcEEECCCCCCCC
Confidence 6531 5677888888888888876
No 44
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.96 E-value=8.8e-29 Score=237.88 Aligned_cols=273 Identities=19% Similarity=0.204 Sum_probs=213.4
Q ss_pred CCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccE
Q 035512 75 NLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEI 154 (372)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 154 (372)
.+.+++.++++++.++...+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCC-CCCHHHHcCCCCCCE
Confidence 4578999999999998655666789999999999999999887889999999999999999998 566666668999999
Q ss_pred EEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcc
Q 035512 155 LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNL 234 (372)
Q Consensus 155 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 234 (372)
|++++|.+.+..+..+.++++|++|++++|.+.+..+..+..+++|+.|++++|.+.+.. +..++.|+.|++++|.+
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n~l 204 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYNLL 204 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSSCC
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccCcc
Confidence 999999998766667799999999999999999888888999999999999999887542 34455566666655544
Q ss_pred cc-------------------cCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcC
Q 035512 235 QE-------------------KIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLP 295 (372)
Q Consensus 235 ~~-------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 295 (372)
.. ..+ ...++|+.|++++|.+++ +..+..+++|+.|++++|.+.+ .....+.
T Consensus 205 ~~l~~~~~L~~L~ls~n~l~~~~~---~~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~----~~~~~~~ 275 (597)
T 3oja_B 205 STLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEK----IMYHPFV 275 (597)
T ss_dssp SEEECCTTCSEEECCSSCCCEEEC---SCCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCE----EESGGGT
T ss_pred ccccCCchhheeeccCCccccccc---ccCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCC----CCHHHhc
Confidence 32 211 112467777777777764 3567788888888888887733 3344556
Q ss_pred ccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccC
Q 035512 296 NLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGIL 367 (372)
Q Consensus 296 ~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~ 367 (372)
.++.|+.|++++|.+++ ++..+..+++|+.|+|++|.+...+. .+..+++|+.|++++|++++..
T Consensus 276 ~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i~~------~~~~l~~L~~L~L~~N~l~~~~ 340 (597)
T 3oja_B 276 KMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHVER------NQPQFDRLENLYLDHNSIVTLK 340 (597)
T ss_dssp TCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCCGG------GHHHHTTCSEEECCSSCCCCCC
T ss_pred CccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCccCc------ccccCCCCCEEECCCCCCCCcC
Confidence 67777777888888875 35556678888888888888775443 3567788888888888887643
No 45
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.96 E-value=7e-28 Score=233.64 Aligned_cols=112 Identities=21% Similarity=0.161 Sum_probs=92.7
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.+++++|++++|.+++..+.+|..+++|++|+|++|++++..+..|.++++|++|++++|.+++..+..|.++++|++|+
T Consensus 75 l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~ 154 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 154 (635)
T ss_dssp CTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEE
T ss_pred CCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeec
Confidence 56899999999999877788899999999999999999865667788999999999999999877667788999999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccC
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
+++|.+........+..+++|++|++++|.+.
T Consensus 155 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~ 186 (635)
T 4g8a_A 155 VAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 186 (635)
T ss_dssp CCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred cccCccccCCCchhhccchhhhhhcccCcccc
Confidence 99998864222334447888999988887654
No 46
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=1.1e-28 Score=217.76 Aligned_cols=242 Identities=24% Similarity=0.311 Sum_probs=134.2
Q ss_pred CCCcccceeecC---------CCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCC--CChhhhCCCCCCEEE
Q 035512 39 SFCNWTGVACDV---------HRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGS--IPSAIFTTYTLKYVN 107 (372)
Q Consensus 39 ~~~~~~~~~~~~---------~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~~~~l~~L~~L~ 107 (372)
..|.|.++.|.. ..++++.|++++|.++...+..|..+++|++|++++|.++.. .+..+..+++|++|+
T Consensus 5 C~C~~~~l~c~~~~l~~ip~~~~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 5 CSCSGTEIRCNSKGLTSVPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp CEEETTEEECCSSCCSSCCSCCCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CeeCCCEEEcCCCCcccCCCCCCCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 457777777742 123556666666666533334455666666666666655422 234455556666666
Q ss_pred cccccccCCCCccccCCCCCCEEEccCCccccccCh-hhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccC
Q 035512 108 LRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPA-NICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDF 186 (372)
Q Consensus 108 l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 186 (372)
+++|.+. ..+..+..+++|++|++++|.+. .++. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus 85 Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 162 (306)
T 2z66_A 85 LSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSF 162 (306)
T ss_dssp CCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEE
T ss_pred CCCCccc-cChhhcCCCCCCCEEECCCCccc-ccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcc
Confidence 6666555 33444555666666666666555 2222 3334555666666666655555555555556666666666555
Q ss_pred cc-ccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCcc
Q 035512 187 SG-AIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTA 265 (372)
Q Consensus 187 ~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 265 (372)
.+ ..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+.+..+..
T Consensus 163 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 242 (306)
T 2z66_A 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE 242 (306)
T ss_dssp GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS
T ss_pred ccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH
Confidence 43 34445555556666666666555554555555556666666666555544445555556666666666555555555
Q ss_pred ccCcC-CCCEEeccCCcc
Q 035512 266 IFNVS-KLKALKLYSNSL 282 (372)
Q Consensus 266 ~~~~~-~L~~L~l~~~~~ 282 (372)
+..++ +|++|++++|.+
T Consensus 243 ~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 243 LQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CCCCCTTCCEEECTTCCE
T ss_pred HHhhhccCCEEEccCCCe
Confidence 55553 566666665555
No 47
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.96 E-value=4.3e-27 Score=218.29 Aligned_cols=292 Identities=20% Similarity=0.216 Sum_probs=197.1
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++. + ++.+++|++|++++|.+++. + +..+++|++|++++|.+++. + +..+++|++|+
T Consensus 63 l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~ 133 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLN 133 (457)
T ss_dssp CTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEE
T ss_pred cCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEE
Confidence 56889999999988864 3 78888999999999988853 3 77888899999998888753 3 77888888888
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+.+ ++ +..+++|+.|++++|...+.. .+..+++|++|++++|.+++. + +..+++|+.|++++|.+.
T Consensus 134 l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~ 204 (457)
T 3bz5_A 134 CARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNIT 204 (457)
T ss_dssp CTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCS
T ss_pred CCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCC
Confidence 88888874 43 336777777777777433332 355667777777777766542 2 555666666666666665
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccc-------------------------
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAI------------------------- 266 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~------------------------- 266 (372)
+. .+..+++|+.|++++|.+.. +| +..+++|++|++++|.+.+..+..+
T Consensus 205 ~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~ 278 (457)
T 3bz5_A 205 KL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLI 278 (457)
T ss_dssp CC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCC
T ss_pred ee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCC
Confidence 43 25556666666666666654 22 5555666666666665554322222
Q ss_pred ----cCcCCCCEEeccCCcccccc----CCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCC
Q 035512 267 ----FNVSKLKALKLYSNSLLGSL----SSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSST 338 (372)
Q Consensus 267 ----~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 338 (372)
..+++|+.|++++|...+.+ ..+....+..++.|+.|++++|++++. .+..+++|+.|++++|.+.+..
T Consensus 279 ~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~l~ 355 (457)
T 3bz5_A 279 YFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQDFS 355 (457)
T ss_dssp EEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCBCT
T ss_pred cccccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCCcc
Confidence 33456666666666543222 122233456677888889999999874 3889999999999999998742
Q ss_pred CCCccc-------ccccCCCCCcEEeCcCCcccccCCCCC
Q 035512 339 PELSFL-------SSLSNFKSLTHIVLSNNPLDGILPKTF 371 (372)
Q Consensus 339 ~~~~~~-------~~l~~~~~L~~L~l~~~~l~~~~p~~~ 371 (372)
.+..+ .....+..|..+++++|.+++.+|..+
T Consensus 356 -~L~~L~l~~n~l~g~~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 356 -SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp -TGGGSSGGGTSEEEEEEEEECCCBCCBTTBEEEECCTTC
T ss_pred -ccccccccCCcEEecceeeecCccccccCcEEEEcChhH
Confidence 21111 112334678899999999999998765
No 48
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=2.7e-28 Score=213.11 Aligned_cols=226 Identities=22% Similarity=0.224 Sum_probs=194.5
Q ss_pred EEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccC
Q 035512 55 VTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF 134 (372)
Q Consensus 55 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (372)
.+.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 13 ~~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 13 KVTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp SCEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CeEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 367888888887 455433 56999999999999877677889999999999999999877788899999999999999
Q ss_pred Cc-cccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 135 NT-LSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 135 ~~-~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
|. +. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+.
T Consensus 90 n~~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 168 (285)
T 1ozn_A 90 NAQLR-SVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV 168 (285)
T ss_dssp CTTCC-CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcc-ccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCccccc
Confidence 97 65 66555566899999999999999887788888999999999999998866666788899999999999998877
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcccc
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLG 284 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 284 (372)
.+..+..+++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 169 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 169 PERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 66778889999999999999988888889999999999999999987666778889999999999998753
No 49
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=3.7e-28 Score=214.43 Aligned_cols=249 Identities=26% Similarity=0.279 Sum_probs=140.5
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCC--CCccccCCCCCCEEEcc
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGA--LPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~ 133 (372)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..+.++++|++|++++|.++.. .+..+..+++|++|+++
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls 86 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECC
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECC
Confidence 46788888876 445433 25788888888888744444567788888888888876532 13445567777777777
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCC-ccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIP-SNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
+|.+. .++..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 87 ~n~i~-~l~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 164 (306)
T 2z66_A 87 FNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE 164 (306)
T ss_dssp SCSEE-EEEEEE-ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred CCccc-cChhhc-CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence 77766 444443 356667777776666654333 345555556666665555554444444455555555555554443
Q ss_pred ccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCc
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDF 292 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 292 (372)
. ..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+ ..++..
T Consensus 165 ~-----------------------~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~ 217 (306)
T 2z66_A 165 N-----------------------FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF----FSLDTF 217 (306)
T ss_dssp G-----------------------EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC----SBCCSG
T ss_pred c-----------------------cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc----CccChh
Confidence 0 2334444444555555555554444444455555555555555544 222232
Q ss_pred CcCccccccccccCCCccccCCCccccCCC-CCCEEecCCCcccc
Q 035512 293 RLPNLEVLLLWDLENNSFSGFIPNTLGNLR-NLERLNLGDNYLTS 336 (372)
Q Consensus 293 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~~~ 336 (372)
.+..+++|+.|++++|.+++..+..+..++ +|++|++++|++..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEEC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeec
Confidence 334444455555555555554555555552 56666666665544
No 50
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=5.1e-27 Score=218.31 Aligned_cols=228 Identities=21% Similarity=0.197 Sum_probs=136.8
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 35666666666666555566666666666666666666555556666666666666666666554455666666666666
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCc-cCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENM-FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
++|.+. .++...+..+++|+.|++++|. +....+..+..+++|++|++++|.+... + .+..+++|+.|++++|.+.
T Consensus 155 ~~N~l~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 155 RNNPIE-SIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCS
T ss_pred CCCCcc-eeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCc
Confidence 666665 5555555566666666666532 3223333455666666666666665532 2 3555566666666666666
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccc
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLL 283 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 283 (372)
+..+..+.++++|+.|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 555556666666666666666666555556666666666666666665555555556666666666666553
No 51
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=8e-27 Score=216.24 Aligned_cols=228 Identities=24% Similarity=0.249 Sum_probs=139.9
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
+.++.|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34566666666666555566666666666666666666555556666666666666666666554455666666666666
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCc-cCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENM-FHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
++|.+. .++...+..+++|+.|++++|. +....+..+.++++|++|++++|.+.. .+ .+..+++|+.|++++|.+.
T Consensus 144 ~~N~i~-~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~Ls~N~l~ 220 (440)
T 3zyj_A 144 RNNPIE-SIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-IP-NLTPLIKLDELDLSGNHLS 220 (440)
T ss_dssp CSCCCC-EECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-CC-CCTTCSSCCEEECTTSCCC
T ss_pred CCCccc-ccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-cc-ccCCCcccCEEECCCCccC
Confidence 666665 5555555566666666666533 322333355666666666666666552 22 3555666666666666666
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccc
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLL 283 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 283 (372)
+..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++...+..+..+++|+.|++++|.+.
T Consensus 221 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp EECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred ccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 555566666666666666666666655666666666666666666666555555666666666666666654
No 52
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=1.3e-26 Score=215.53 Aligned_cols=247 Identities=22% Similarity=0.230 Sum_probs=195.9
Q ss_pred EEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccC
Q 035512 55 VTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF 134 (372)
Q Consensus 55 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (372)
...++.++..++ .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 456777888776 4555443 5889999999998877788888999999999999988877778888899999999999
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecc-cCccccCcchhCCCCCCeeeccCCccccc
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN-DFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
|.+. .++...+..+++|++|++++|.+....+..+.++++|++|+++++ .+.......+..+++|+.|++++|.+.+.
T Consensus 133 n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 133 NWLT-VIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SCCS-BCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CcCC-ccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 9887 777776778889999999998888777777888889999998874 44444445677888888888888887643
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcC
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFR 293 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 293 (372)
+ .+..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|.+ ..++...
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~ 285 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNL----SSLPHDL 285 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCC----SCCCTTS
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcC----CccChHH
Confidence 3 467778888888888888877778888888888888888888777777788888888888888877 4555556
Q ss_pred cCccccccccccCCCccc
Q 035512 294 LPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 294 ~~~l~~L~~l~l~~~~~~ 311 (372)
+..+++|+.|++++|.+.
T Consensus 286 ~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 286 FTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp STTCTTCCEEECCSSCEE
T ss_pred hccccCCCEEEccCCCcC
Confidence 667777777788888765
No 53
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=2.5e-26 Score=212.92 Aligned_cols=248 Identities=22% Similarity=0.237 Sum_probs=201.8
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
....++..+..++ .+|..+. ++++.|++++|.+++..+..|.++++|++|++++|.++...+..|.++++|++|+++
T Consensus 44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 3456788888887 5665444 689999999999987777889999999999999999987777888999999999999
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecc-cCccccCcchhCCCCCCeeeccCCcccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYN-DFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
+|.+. .++...+..+++|++|++++|.+....+..+..+++|++|+++++ .+.......+..+++|+.|++++|.+..
T Consensus 121 ~n~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 121 DNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp SSCCS-SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCcCC-eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 99988 777777778999999999999988777778888999999999884 4444444567888889999999888873
Q ss_pred ccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCc
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDF 292 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 292 (372)
++ .+..+++|+.|++++|.+....+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|++ ..++..
T Consensus 200 -~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~ 273 (440)
T 3zyj_A 200 -IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNL----TLLPHD 273 (440)
T ss_dssp -CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCC----CCCCTT
T ss_pred -cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCC----CccChh
Confidence 33 367788888888888888877788888888888888888888877778888888888888888887 455666
Q ss_pred CcCccccccccccCCCccc
Q 035512 293 RLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 293 ~~~~l~~L~~l~l~~~~~~ 311 (372)
.|..+++|+.|++++|.+.
T Consensus 274 ~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp TTSSCTTCCEEECCSSCEE
T ss_pred HhccccCCCEEEcCCCCcc
Confidence 6667777777788888765
No 54
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.95 E-value=2.4e-27 Score=213.49 Aligned_cols=257 Identities=20% Similarity=0.215 Sum_probs=210.2
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++++|.++...+..+..+++|++|+
T Consensus 51 ~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 130 (353)
T 2z80_A 51 TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLN 130 (353)
T ss_dssp CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence 45899999999999977777899999999999999999977788899999999999999999865555588999999999
Q ss_pred ccCCccccccCh-hhhcCCCCccEEEccCC-ccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCc
Q 035512 132 FTFNTLSGEIPA-NICSNLPFLEILSLQEN-MFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANR 209 (372)
Q Consensus 132 l~~~~~~~~~~~-~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 209 (372)
+++|.+. .++. ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 131 L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 209 (353)
T 2z80_A 131 LLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQ 209 (353)
T ss_dssp CTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSC
T ss_pred CCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCc
Confidence 9999998 6766 56668999999999998 4666667788999999999999999988878889999999999999999
Q ss_pred cccccCccccCCCCCCEEEccCCcccccCccccc---CCCCCCEEEccCCcccc----ccCccccCcCCCCEEeccCCcc
Q 035512 210 LQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIG---NLRNLEELNLGDNKLVG----TIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 210 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~---~~~~L~~L~l~~~~~~~----~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
+.......+..+++|+.|++++|.+....+..+. ....++.++++++.+.+ .+|..+.++++|++|++++|++
T Consensus 210 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l 289 (353)
T 2z80_A 210 HILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQL 289 (353)
T ss_dssp STTHHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCC
T ss_pred cccchhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCC
Confidence 8654444455689999999999998775544333 45678889998887754 2556677888888888888877
Q ss_pred ccccCCCCCcCcCccccccccccCCCccccC
Q 035512 283 LGSLSSIPDFRLPNLEVLLLWDLENNSFSGF 313 (372)
Q Consensus 283 ~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 313 (372)
..++...|..+++|+.|++++|.+.+.
T Consensus 290 ----~~i~~~~~~~l~~L~~L~L~~N~~~~~ 316 (353)
T 2z80_A 290 ----KSVPDGIFDRLTSLQKIWLHTNPWDCS 316 (353)
T ss_dssp ----CCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred ----CccCHHHHhcCCCCCEEEeeCCCccCc
Confidence 445554456666667777777776543
No 55
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=9.1e-27 Score=222.50 Aligned_cols=287 Identities=27% Similarity=0.316 Sum_probs=224.8
Q ss_pred ccccCCCCCCCCCCcccceee------cCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCC
Q 035512 28 NFFAKNWNTNISFCNWTGVAC------DVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTY 101 (372)
Q Consensus 28 ~~~~~~~~~~~~~~~~~~~~~------~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~ 101 (372)
...+ .|.....+|.|++..+ ......++.|+++++.++ .+|..+. ++|++|++++|.++ .+|. .++
T Consensus 10 ~~w~-~W~~~~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~ 81 (622)
T 3g06_A 10 AVWS-AWRRAAPAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPP 81 (622)
T ss_dssp CHHH-HHHHTCCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCT
T ss_pred HHHH-HHHhcCCcchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCC
Confidence 3344 6777778888855332 112346899999999998 6666554 79999999999998 5555 678
Q ss_pred CCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEe
Q 035512 102 TLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSL 181 (372)
Q Consensus 102 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 181 (372)
+|++|++++|.++. +|. .+++|++|++++|.+. .++. .+++|+.|++++|.+.. ++. .+++|++|++
T Consensus 82 ~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~l~~----~l~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L 148 (622)
T 3g06_A 82 ELRTLEVSGNQLTS-LPV---LPPGLLELSIFSNPLT-HLPA----LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSV 148 (622)
T ss_dssp TCCEEEECSCCCSC-CCC---CCTTCCEEEECSCCCC-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCCEEEcCCCcCCc-CCC---CCCCCCEEECcCCcCC-CCCC----CCCCcCEEECCCCCCCc-CCC---CCCCCCEEEC
Confidence 99999999999884 444 6799999999999998 5665 57899999999999875 343 2489999999
Q ss_pred ecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccc
Q 035512 182 AYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGT 261 (372)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 261 (372)
++|.+.+. +. ..++|+.|++++|.+.. ++ ..+++|+.|++++|.+.. ++. ..++|+.|++++|.++.
T Consensus 149 s~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~- 215 (622)
T 3g06_A 149 SDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLTS- 215 (622)
T ss_dssp CSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSS-
T ss_pred cCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCcccc-
Confidence 99988743 32 35689999999999875 34 456899999999999875 332 24789999999999874
Q ss_pred cCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCC
Q 035512 262 IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPEL 341 (372)
Q Consensus 262 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 341 (372)
++. .+++|++|++++|.+ ..++ ..+++|+.|++++|.++. +|. .+++|+.|++++|.+... |.
T Consensus 216 l~~---~~~~L~~L~Ls~N~L----~~lp----~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~~l-p~- 278 (622)
T 3g06_A 216 LPA---LPSGLKELIVSGNRL----TSLP----VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLTRL-PE- 278 (622)
T ss_dssp CCC---CCTTCCEEECCSSCC----SCCC----CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCCSC-CG-
T ss_pred cCC---CCCCCCEEEccCCcc----CcCC----CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCCcC-CH-
Confidence 443 348999999999988 3444 244667777999999984 444 578999999999999854 43
Q ss_pred cccccccCCCCCcEEeCcCCcccccCCC
Q 035512 342 SFLSSLSNFKSLTHIVLSNNPLDGILPK 369 (372)
Q Consensus 342 ~~~~~l~~~~~L~~L~l~~~~l~~~~p~ 369 (372)
.+..+++|+.|++++|++++.+|.
T Consensus 279 ----~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 279 ----SLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ----GGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ----HHhhccccCEEEecCCCCCCcCHH
Confidence 478899999999999999886654
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=5.9e-26 Score=198.22 Aligned_cols=228 Identities=26% Similarity=0.267 Sum_probs=174.7
Q ss_pred CEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeec
Q 035512 104 KYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAY 183 (372)
Q Consensus 104 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 183 (372)
++++.+++.++ .+|..+ .++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~-~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRIS-HVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCC-ccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777776 344433 468899999998887 56655556788899999988888877777888888888888888
Q ss_pred cc-CccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccccc
Q 035512 184 ND-FSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTI 262 (372)
Q Consensus 184 ~~-~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 262 (372)
|. +....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 169 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccC
Confidence 86 66555677888888888888888887776777888888888888888887766666788888888888888887666
Q ss_pred CccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 263 PTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 263 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
+..+.++++|++|++++|.+.+ +....+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.....
T Consensus 170 ~~~~~~l~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~ 242 (285)
T 1ozn_A 170 ERAFRGLHSLDRLLLHQNRVAH----VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR 242 (285)
T ss_dssp TTTTTTCTTCCEEECCSSCCCE----ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred HHHhcCccccCEEECCCCcccc----cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence 6677888888888888887733 333455667777777888888876666667788888888888887765443
No 57
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=8.7e-26 Score=200.80 Aligned_cols=236 Identities=23% Similarity=0.270 Sum_probs=168.6
Q ss_pred CCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccE
Q 035512 75 NLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEI 154 (372)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 154 (372)
..+++++|++++|.++ .+|..+.++++|++|++++|.++ ..|..+..+++|++|++++|.+. .+|..+. .+++|++
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~-~l~~L~~ 154 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIA-SLNRLRE 154 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGG-GCTTCCE
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHh-cCcCCCE
Confidence 4578999999999998 77888888999999999999998 77888899999999999999988 7777655 7889999
Q ss_pred EEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcc
Q 035512 155 LSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNL 234 (372)
Q Consensus 155 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 234 (372)
|++++|.+.+..|..+.. . .....+..+++|++|++++|.+. .+|..+..+++|++|++++|.+
T Consensus 155 L~L~~n~~~~~~p~~~~~------~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l 218 (328)
T 4fcg_A 155 LSIRACPELTELPEPLAS------T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPL 218 (328)
T ss_dssp EEEEEETTCCCCCSCSEE------E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCC
T ss_pred EECCCCCCccccChhHhh------c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCC
Confidence 999988776666655432 0 01122344556666666666555 4455566666666666666666
Q ss_pred cccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCC
Q 035512 235 QEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFI 314 (372)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~ 314 (372)
.. .+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+ ...+..+++|+.|++++|.+.+.+
T Consensus 219 ~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~----p~~~~~l~~L~~L~L~~n~~~~~i 293 (328)
T 4fcg_A 219 SA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTL----PLDIHRLTQLEKLDLRGCVNLSRL 293 (328)
T ss_dssp CC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBC----CTTGGGCTTCCEEECTTCTTCCCC
T ss_pred Cc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhc----chhhhcCCCCCEEeCCCCCchhhc
Confidence 53 3445666667777777776666666666777777777777776653322 123456666677777777777777
Q ss_pred CccccCCCCCCEEecCCCccc
Q 035512 315 PNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 315 ~~~~~~~~~L~~L~l~~n~~~ 335 (372)
|..+..+++|+.+++..+.+.
T Consensus 294 P~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 294 PSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CGGGGGSCTTCEEECCGGGSC
T ss_pred cHHHhhccCceEEeCCHHHHH
Confidence 888888888888888876543
No 58
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.94 E-value=5.8e-25 Score=203.80 Aligned_cols=273 Identities=26% Similarity=0.382 Sum_probs=137.2
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.|++++|.+++ ++. ..++|++|++++|.+++ +| .+..+++|++|++++|.+++ .|.. .++|++|++
T Consensus 111 ~~L~~L~l~~n~l~~-l~~---~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L 180 (454)
T 1jl5_A 111 QSLKSLLVDNNNLKA-LSD---LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAA 180 (454)
T ss_dssp TTCCEEECCSSCCSC-CCS---CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEEC
T ss_pred CCCcEEECCCCccCc-ccC---CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEEC
Confidence 345555555555542 111 01467777777777663 45 46667777777777776653 3332 246666666
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
++|.+. .+|. +..+++|+.|++++|.+.+ .+.. .++|++|++++|.+. ..+ .+..+++|++|++++|.+.+
T Consensus 181 ~~n~l~-~l~~--~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~ 251 (454)
T 1jl5_A 181 GNNQLE-ELPE--LQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKT 251 (454)
T ss_dssp CSSCCS-SCCC--CTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS
T ss_pred cCCcCC-cCcc--ccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCc
Confidence 666665 3442 3356666666666666553 2211 135666666666555 333 25555666666666665543
Q ss_pred ccCccccCCCCCCEEEccCCcccccCcccc-----------------cCCCCCCEEEccCCccccccCccccCc-CCCCE
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEI-----------------GNLRNLEELNLGDNKLVGTIPTAIFNV-SKLKA 274 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l-----------------~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~ 274 (372)
++. ..++|+.|++++|.+.. .|... ...++|++|++++|.+.+. ... ++|++
T Consensus 252 -l~~---~~~~L~~L~l~~N~l~~-l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i-----~~~~~~L~~ 321 (454)
T 1jl5_A 252 -LPD---LPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSL-----CDLPPSLEE 321 (454)
T ss_dssp -CCS---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEE-----CCCCTTCCE
T ss_pred -ccc---cccccCEEECCCCcccc-cCcccCcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcc-----cCCcCcCCE
Confidence 221 12445555555555443 12111 0013445555555544421 122 47777
Q ss_pred EeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCcccc--CCCCCcccccccCC--
Q 035512 275 LKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS--STPELSFLSSLSNF-- 350 (372)
Q Consensus 275 L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~--~~~~~~~~~~l~~~-- 350 (372)
|++++|++. .++. .+.+|+.|++++|.++. +|. .+++|++|++++|++.+ ..|. .+..+
T Consensus 322 L~Ls~N~l~----~lp~----~~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~-----~l~~L~~ 384 (454)
T 1jl5_A 322 LNVSNNKLI----ELPA----LPPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPE-----SVEDLRM 384 (454)
T ss_dssp EECCSSCCS----CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCT-----TCCEEEC
T ss_pred EECCCCccc----cccc----cCCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChH-----HHHhhhh
Confidence 777777763 2332 23566666898888874 444 46889999999998887 3343 23333
Q ss_pred -----------CCCcEEeCcCCcccc--cCCCCC
Q 035512 351 -----------KSLTHIVLSNNPLDG--ILPKTF 371 (372)
Q Consensus 351 -----------~~L~~L~l~~~~l~~--~~p~~~ 371 (372)
++|+.|++++|++++ .+|.++
T Consensus 385 n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~sl 418 (454)
T 1jl5_A 385 NSHLAEVPELPQNLKQLHVETNPLREFPDIPESV 418 (454)
T ss_dssp CC--------------------------------
T ss_pred cccccccccccCcCCEEECCCCcCCccccchhhH
Confidence 789999999999887 677654
No 59
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=2.3e-25 Score=192.83 Aligned_cols=216 Identities=27% Similarity=0.343 Sum_probs=142.6
Q ss_pred CCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCC
Q 035512 38 ISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGAL 117 (372)
Q Consensus 38 ~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 117 (372)
.+.|.|.+..|.. ....+.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++...
T Consensus 2 ~~~C~~~~~~C~c-~~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 2 EALCKKDGGVCSC-NNNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCCBGGGTCSBEE-ETTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred CccCCCCCCCCEe-CCCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 4789999988864 335678999999998 4555443 57899999999988666667888888888888888887655
Q ss_pred CccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCC
Q 035512 118 PSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNL 197 (372)
Q Consensus 118 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 197 (372)
+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+....+..+..+++|++|++++|.+....+..+..+
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l 156 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL 156 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred hhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCC
Confidence 556677888888888888776 5665555567777777777776665555555566666666666665554333334444
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEec
Q 035512 198 TKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKL 277 (372)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 277 (372)
++|+.|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|+.|++
T Consensus 157 ~~L~~L~L~~n------------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l 212 (270)
T 2o6q_A 157 TSLKELRLYNN------------------------QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQL 212 (270)
T ss_dssp TTCCEEECCSS------------------------CCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEEC
T ss_pred cccceeEecCC------------------------cCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEe
Confidence 45555555444 444444444555555555555555555444444555666666666
Q ss_pred cCCcc
Q 035512 278 YSNSL 282 (372)
Q Consensus 278 ~~~~~ 282 (372)
++|++
T Consensus 213 ~~N~~ 217 (270)
T 2o6q_A 213 QENPW 217 (270)
T ss_dssp CSSCB
T ss_pred cCCCe
Confidence 66655
No 60
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=2.3e-29 Score=234.90 Aligned_cols=308 Identities=23% Similarity=0.186 Sum_probs=150.3
Q ss_pred CcEEEEEeCCCCccc----cccccccCCCCCCEEECCCCcCCCCCChhhh-CCC----CCCEEEcccccccC----CCCc
Q 035512 53 HRVTVLNISGLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSAIF-TTY----TLKYVNLRQNQLSG----ALPS 119 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~----~L~~L~l~~~~~~~----~~~~ 119 (372)
++++.|++++|.+++ .++..+..+++|++|++++|.+++..+..+. .++ +|++|++++|.++. ..+.
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~ 107 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSS 107 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHH
Confidence 356666666666553 2344455556666666666665533222222 233 46666666665553 2244
Q ss_pred cccCCCCCCEEEccCCccccccChhh----hcCCCCccEEEccCCccCccC----CccCcCCCCCcEEEeecccCccccC
Q 035512 120 FIFNKSSLQHLDFTFNTLSGEIPANI----CSNLPFLEILSLQENMFHGAI----PSNLSNCTYLRILSLAYNDFSGAIP 191 (372)
Q Consensus 120 ~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~l~~L~~L~l~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~~~ 191 (372)
.+..+++|++|++++|.+.+..+..+ ....++|++|++++|.+.+.. +..+..+++|++|++++|.+.....
T Consensus 108 ~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~ 187 (461)
T 1z7x_W 108 TLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGV 187 (461)
T ss_dssp HTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHH
T ss_pred HHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHH
Confidence 55566666666666665543222222 222345666666666554321 2333445556666666555543322
Q ss_pred cchh-----CCCCCCeeeccCCccccc----cCccccCCCCCCEEEccCCcccccC-----cccccCCCCCCEEEccCCc
Q 035512 192 REIG-----NLTKLKGLYLGANRLQGE----IPREFGNLAVLELMSLAGNNLQEKI-----PPEIGNLRNLEELNLGDNK 257 (372)
Q Consensus 192 ~~~~-----~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~~~ 257 (372)
..+. ..++|++|++++|.+.+. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.
T Consensus 188 ~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~ 267 (461)
T 1z7x_W 188 RVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECG 267 (461)
T ss_dssp HHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred HHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCC
Confidence 2221 234555555555555432 2334444555555555555543321 1111234455555555555
Q ss_pred cccc----cCccccCcCCCCEEeccCCcccccc-------------------------CCC----CCcCcCccccccccc
Q 035512 258 LVGT----IPTAIFNVSKLKALKLYSNSLLGSL-------------------------SSI----PDFRLPNLEVLLLWD 304 (372)
Q Consensus 258 ~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~-------------------------~~~----~~~~~~~l~~L~~l~ 304 (372)
++.. ++..+..+++|++|++++|.+.+.. ... -...+..+++|+.|+
T Consensus 268 l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~ 347 (461)
T 1z7x_W 268 ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQ 347 (461)
T ss_dssp CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEE
T ss_pred CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEE
Confidence 4432 2333444555555555555442211 000 001122345566666
Q ss_pred cCCCccccCCCcccc----C-CCCCCEEecCCCcccc----CCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 305 LENNSFSGFIPNTLG----N-LRNLERLNLGDNYLTS----STPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 305 l~~~~~~~~~~~~~~----~-~~~L~~L~l~~n~~~~----~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
+++|.+++..+..+. . .++|++|++++|.++. ..+. .+..+++|++|++++|++++
T Consensus 348 Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~-----~l~~~~~L~~L~l~~N~i~~ 412 (461)
T 1z7x_W 348 ISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAA-----TLLANHSLRELDLSNNCLGD 412 (461)
T ss_dssp CCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHH-----HHHHCCCCCEEECCSSSCCH
T ss_pred ccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHH-----HHHhCCCccEEECCCCCCCH
Confidence 766666543322222 1 4567777777776653 2221 35566778888888887764
No 61
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=6.4e-28 Score=213.32 Aligned_cols=203 Identities=19% Similarity=0.196 Sum_probs=104.8
Q ss_pred CCCccEEEccCCccCccCCccC--cCCCCCcEEEeecccCccccCcchhCC-----CCCCeeeccCCccccccCccccCC
Q 035512 149 LPFLEILSLQENMFHGAIPSNL--SNCTYLRILSLAYNDFSGAIPREIGNL-----TKLKGLYLGANRLQGEIPREFGNL 221 (372)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~~ 221 (372)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+
T Consensus 94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l 172 (312)
T 1wwl_A 94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVF 172 (312)
T ss_dssp TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCC
T ss_pred cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccC
Confidence 3344444444444433333332 3444444444444444433 3333333 455555555555554444455555
Q ss_pred CCCCEEEccCCccccc--Ccccc--cCCCCCCEEEccCCcccc---ccCccccCcCCCCEEeccCCccccccCCCCCcCc
Q 035512 222 AVLELMSLAGNNLQEK--IPPEI--GNLRNLEELNLGDNKLVG---TIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRL 294 (372)
Q Consensus 222 ~~L~~L~l~~~~~~~~--~~~~l--~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 294 (372)
++|++|++++|.+... .+..+ ..+++|++|++++|.+.+ .....+.++++|++|++++|.+.+.. +...+
T Consensus 173 ~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~ 249 (312)
T 1wwl_A 173 PALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAA---GAPSC 249 (312)
T ss_dssp SSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSC---CCSCC
T ss_pred CCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCccc---chhhh
Confidence 5555555555554322 11122 455666666666665542 11122345566666666666653221 11223
Q ss_pred CccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 295 PNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 295 ~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
..+++|+.|++++|.++ .+|..+. ++|++|++++|++.+. +. +..+++|++|++++|++++
T Consensus 250 ~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~------~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 250 DWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS------PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC------TTTSCEEEEEECTTCTTTC
T ss_pred hhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh------HhhCCCCCEEeccCCCCCC
Confidence 34455566677777766 4444443 6777777777777665 32 5567777888888887765
No 62
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.94 E-value=3.7e-29 Score=233.50 Aligned_cols=311 Identities=21% Similarity=0.187 Sum_probs=208.2
Q ss_pred cEEEEEeCCCCccc----cccccccCCCCCCEEECCCCcCCCCCChhhh-----CCCCCCEEEcccccccCCC----Ccc
Q 035512 54 RVTVLNISGLNLTG----TIPSQLGNLSSLQSLNLSFNRLSGSIPSAIF-----TTYTLKYVNLRQNQLSGAL----PSF 120 (372)
Q Consensus 54 ~l~~l~l~~~~l~~----~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-----~l~~L~~L~l~~~~~~~~~----~~~ 120 (372)
++++|++++|.++. .++..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++... +..
T Consensus 86 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~ 165 (461)
T 1z7x_W 86 KIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASV 165 (461)
T ss_dssp CCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH
T ss_pred ceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHH
Confidence 57777777777663 3466667777777777777776543333222 2446777777777666432 344
Q ss_pred ccCCCCCCEEEccCCccccccChhhh----cCCCCccEEEccCCccCcc----CCccCcCCCCCcEEEeecccCccccC-
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPANIC----SNLPFLEILSLQENMFHGA----IPSNLSNCTYLRILSLAYNDFSGAIP- 191 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~----~~l~~L~~L~l~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~- 191 (372)
+..+++|++|++++|.+.+..+..+. ...++|+.|++++|.+... ++..+..+++|++|++++|.+.....
T Consensus 166 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~ 245 (461)
T 1z7x_W 166 LRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245 (461)
T ss_dssp HHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHH
T ss_pred HhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHH
Confidence 55567888888888877643333222 2356888888888877643 34556677889999998887764322
Q ss_pred ----cchhCCCCCCeeeccCCccccc----cCccccCCCCCCEEEccCCcccccCccccc-----CCCCCCEEEccCCcc
Q 035512 192 ----REIGNLTKLKGLYLGANRLQGE----IPREFGNLAVLELMSLAGNNLQEKIPPEIG-----NLRNLEELNLGDNKL 258 (372)
Q Consensus 192 ----~~~~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~ 258 (372)
..+..+++|++|++++|.++.. ++..+..+++|++|++++|.+....+..+. ..++|++|++++|.+
T Consensus 246 ~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l 325 (461)
T 1z7x_W 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF 325 (461)
T ss_dssp HHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCC
T ss_pred HHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCC
Confidence 2223578899999999887753 456677788999999999988654333332 236899999999988
Q ss_pred ccc----cCccccCcCCCCEEeccCCccccccCCCCCcCcC-ccccccccccCCCcccc----CCCccccCCCCCCEEec
Q 035512 259 VGT----IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLP-NLEVLLLWDLENNSFSG----FIPNTLGNLRNLERLNL 329 (372)
Q Consensus 259 ~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~l~~L~~l~l~~~~~~~----~~~~~~~~~~~L~~L~l 329 (372)
++. ++..+..+++|++|++++|.+.+.....-...+. ..++|+.|++++|.+++ .++..+..+++|++|++
T Consensus 326 ~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 326 TAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp BGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred chHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEEC
Confidence 754 4556677899999999999885432110001111 24577777999999986 56777888999999999
Q ss_pred CCCccccCCCCCcccccc-cCCCCCcEEeCcCCcccc
Q 035512 330 GDNYLTSSTPELSFLSSL-SNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 330 ~~n~~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~l~~ 365 (372)
++|++....... +...+ ...+.|+.|++.++.+..
T Consensus 406 ~~N~i~~~~~~~-l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 406 SNNCLGDAGILQ-LVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp CSSSCCHHHHHH-HHHHHTSTTCCCCEEECTTCCCCH
T ss_pred CCCCCCHHHHHH-HHHHhccCCcchhheeecccccCH
Confidence 999987653220 11112 224578899888887654
No 63
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-27 Score=210.31 Aligned_cols=262 Identities=21% Similarity=0.188 Sum_probs=204.8
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
.+++..+++++.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 457777888888876666667778899999999999987777889999999999999998875443 888999999999
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
++|.+. .++ ..++|+.|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+.+
T Consensus 88 s~n~l~-~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~ 158 (317)
T 3o53_A 88 NNNYVQ-ELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT 158 (317)
T ss_dssp CSSEEE-EEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCE
T ss_pred cCCccc-ccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCc
Confidence 999887 333 348899999999988765433 36779999999998887666678888899999999998887
Q ss_pred ccCccc-cCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 213 EIPREF-GNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 213 ~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
..+..+ ..+++|++|++++|.+.... ....+++|++|++++|.+++. +..+..+++|+.|++++|.+. .++.
T Consensus 159 ~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~----~l~~ 231 (317)
T 3o53_A 159 VNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLV----LIEK 231 (317)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCC----EECT
T ss_pred ccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCccc----chhh
Confidence 655555 46788999999999887652 233478899999999988744 445888889999999998884 2332
Q ss_pred cCcCccccccccccCCCccc-cCCCccccCCCCCCEEecCCCc
Q 035512 292 FRLPNLEVLLLWDLENNSFS-GFIPNTLGNLRNLERLNLGDNY 333 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~-~~~~~~~~~~~~L~~L~l~~n~ 333 (372)
.+..+++|+.+++++|.+. +..+.++..+++|+.|+++++.
T Consensus 232 -~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 232 -ALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp -TCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -HhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 3456677777788888887 5566777888888888888654
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.93 E-value=5.1e-27 Score=207.51 Aligned_cols=248 Identities=21% Similarity=0.225 Sum_probs=145.8
Q ss_pred CCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccC-CCCcccc-------CCCCCCEEEccCCccccccChhhh
Q 035512 75 NLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSG-ALPSFIF-------NKSSLQHLDFTFNTLSGEIPANIC 146 (372)
Q Consensus 75 ~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~ 146 (372)
..++|++|++++|.+ .+|..+... |+.|++++|.+.. ..+..+. .+++|++|++++|.+.+.+|..++
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 116 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLL 116 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHH
Confidence 344455555555555 344433332 4555555554421 2222222 355555555555555544444432
Q ss_pred -cCCCCccEEEccCCccCccCCccCcCC-----CCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc--cCccc
Q 035512 147 -SNLPFLEILSLQENMFHGAIPSNLSNC-----TYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE--IPREF 218 (372)
Q Consensus 147 -~~l~~L~~L~l~~~~~~~~~~~~l~~l-----~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l 218 (372)
..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+
T Consensus 117 ~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~ 195 (312)
T 1wwl_A 117 EATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISAL 195 (312)
T ss_dssp SCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHS
T ss_pred HhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHH
Confidence 3455555555555555543 3333333 5666666666666555545566666666666666654432 11222
Q ss_pred --cCCCCCCEEEccCCcccc---cCcccccCCCCCCEEEccCCccccccC-ccccCcCCCCEEeccCCccccccCCCCCc
Q 035512 219 --GNLAVLELMSLAGNNLQE---KIPPEIGNLRNLEELNLGDNKLVGTIP-TAIFNVSKLKALKLYSNSLLGSLSSIPDF 292 (372)
Q Consensus 219 --~~~~~L~~L~l~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 292 (372)
..+++|++|++++|.+.. .....+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ ..++..
T Consensus 196 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l----~~ip~~ 271 (312)
T 1wwl_A 196 CPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGL----KQVPKG 271 (312)
T ss_dssp CTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCC----SSCCSS
T ss_pred HhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCcc----Chhhhh
Confidence 566777777777777652 122334567788888888888876553 4555678888888888887 344443
Q ss_pred CcCccccccccccCCCccccCCCccccCCCCCCEEecCCCcccc
Q 035512 293 RLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 293 ~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
.+ ++|+.|++++|++++. |. +..+++|++|++++|++++
T Consensus 272 ~~---~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 272 LP---AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CC---SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred cc---CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 33 5566668999988865 54 7888999999999998765
No 65
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.93 E-value=2.1e-27 Score=210.54 Aligned_cols=260 Identities=20% Similarity=0.186 Sum_probs=196.5
Q ss_pred CCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEcc
Q 035512 79 LQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQ 158 (372)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (372)
++..+++.+.+.......+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~---~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD---LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE---ETTCTTCCEEECC
T ss_pred eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh---hhhcCCCCEEECc
Confidence 3445555655543333445567789999999999987777788999999999999999874333 5588999999999
Q ss_pred CCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 035512 159 ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKI 238 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 238 (372)
+|.+.+. ...++|++|++++|.+....+. .+++|+.|++++|.+.+..+..+..+++|+.|++++|.+....
T Consensus 89 ~n~l~~l-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (317)
T 3o53_A 89 NNYVQEL-----LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (317)
T ss_dssp SSEEEEE-----EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred CCccccc-----cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence 9988643 2348899999999988755433 3577999999999988777777888899999999999888766
Q ss_pred cccc-cCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCcc
Q 035512 239 PPEI-GNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNT 317 (372)
Q Consensus 239 ~~~l-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~ 317 (372)
+..+ ..+++|++|++++|.+++.. ....+++|++|++++|.+. .++.. +..+++|+.|++++|.++. +|..
T Consensus 161 ~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~----~l~~~-~~~l~~L~~L~L~~N~l~~-l~~~ 232 (317)
T 3o53_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLA----FMGPE-FQSAAGVTWISLRNNKLVL-IEKA 232 (317)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCC----EECGG-GGGGTTCSEEECTTSCCCE-ECTT
T ss_pred HHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCC----cchhh-hcccCcccEEECcCCcccc-hhhH
Confidence 6655 46789999999999887552 2335889999999999883 33332 5677788888999998884 5667
Q ss_pred ccCCCCCCEEecCCCccc-cCCCCCcccccccCCCCCcEEeCcCCc
Q 035512 318 LGNLRNLERLNLGDNYLT-SSTPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 318 ~~~~~~L~~L~l~~n~~~-~~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
+..+++|+.|++++|++. +..+. .+..+++|+.|++++|+
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~-----~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRD-----FFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHH-----HHHTCHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCcCHHH-----HHhccccceEEECCCch
Confidence 788889999999999887 33333 35667777777777443
No 66
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.93 E-value=5.4e-25 Score=204.01 Aligned_cols=280 Identities=25% Similarity=0.377 Sum_probs=158.1
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCC---------------------------------
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTT--------------------------------- 100 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l--------------------------------- 100 (372)
+++.++++++.+ +.+|..++.+++|++|++++|.+.+.+|..++++
T Consensus 12 ~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~lp~~~ 90 (454)
T 1jl5_A 12 FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSLPELP 90 (454)
T ss_dssp -----------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCCCSCC
T ss_pred cchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccCCCCc
Confidence 455555555555 3455555555555555555555444444444433
Q ss_pred CCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEE
Q 035512 101 YTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILS 180 (372)
Q Consensus 101 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 180 (372)
++|++|++++|.+++ .|.. .++|++|++++|.+. .++. ..++|++|++++|.+.+ +| .+.++++|++|+
T Consensus 91 ~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~-~l~~----~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 91 PHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLK-ALSD----LPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp TTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-CCCS----CCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred CCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccC-cccC----CCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 345555555555543 2321 255666666666555 2321 12567777777777764 44 477777777887
Q ss_pred eecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccc
Q 035512 181 LAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVG 260 (372)
Q Consensus 181 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 260 (372)
+++|.+.+ .+.. .++|++|++++|.+.+ ++ .+..+++|+.|++++|.+.. .|.. .++|++|++++|.+.
T Consensus 160 l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~n~l~- 228 (454)
T 1jl5_A 160 VDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVAGNNILE- 228 (454)
T ss_dssp CCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEECCSSCCS-
T ss_pred CCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEECcCCcCC-
Confidence 77777663 3322 2467778887777764 34 46777888888888887764 2222 247888888888776
Q ss_pred ccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCC--
Q 035512 261 TIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSST-- 338 (372)
Q Consensus 261 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~-- 338 (372)
.+| .+..+++|++|++++|++. .++. ...+|+.|++++|.+++ +|.. .++|++|++++|.+.+.+
T Consensus 229 ~lp-~~~~l~~L~~L~l~~N~l~----~l~~----~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~~~ 295 (454)
T 1jl5_A 229 ELP-ELQNLPFLTTIYADNNLLK----TLPD----LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLSEL 295 (454)
T ss_dssp SCC-CCTTCTTCCEEECCSSCCS----SCCS----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEESCC
T ss_pred ccc-ccCCCCCCCEEECCCCcCC----cccc----cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcccCc
Confidence 455 4778888888888888773 3332 12456666888888875 3432 367888888888877632
Q ss_pred C-CCcc-------cccccCC-CCCcEEeCcCCcccccCCCC
Q 035512 339 P-ELSF-------LSSLSNF-KSLTHIVLSNNPLDGILPKT 370 (372)
Q Consensus 339 ~-~~~~-------~~~l~~~-~~L~~L~l~~~~l~~~~p~~ 370 (372)
+ .+.. ...+..+ ++|++|++++|++++ +|..
T Consensus 296 ~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N~l~~-lp~~ 335 (454)
T 1jl5_A 296 PPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPAL 335 (454)
T ss_dssp CTTCCEEECCSSCCSEECCCCTTCCEEECCSSCCSC-CCCC
T ss_pred CCcCCEEECcCCcCCcccCCcCcCCEEECCCCcccc-cccc
Confidence 1 1110 0112233 478888888888886 6654
No 67
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=8.4e-24 Score=183.63 Aligned_cols=222 Identities=23% Similarity=0.223 Sum_probs=169.6
Q ss_pred EEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCcc
Q 035512 58 LNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTL 137 (372)
Q Consensus 58 l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (372)
++..+..++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 88 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCcc
Confidence 455555554 4454333 4788899988888866666788888899999988888866666788888899999988888
Q ss_pred ccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccc-cCcchhCCCCCCeeeccCCccccccCc
Q 035512 138 SGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGA-IPREIGNLTKLKGLYLGANRLQGEIPR 216 (372)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~ 216 (372)
. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+.+..+.
T Consensus 89 ~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 89 Q-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp C-EECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred C-ccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 7 55555555788889999888888776666788888899999988887753 467788888888888888888766666
Q ss_pred cccCCCCCC----EEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcccc
Q 035512 217 EFGNLAVLE----LMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLG 284 (372)
Q Consensus 217 ~l~~~~~L~----~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 284 (372)
.+..+..|+ .|++++|.+....+..+.. .+|++|++++|.+++..+..+.++++|+.|++++|++.+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 238 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 238 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCC
T ss_pred HhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccc
Confidence 666666666 7888888887655544443 478888888888886666667888888888888888753
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.92 E-value=3.3e-25 Score=207.42 Aligned_cols=234 Identities=22% Similarity=0.199 Sum_probs=120.4
Q ss_pred CCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEc
Q 035512 78 SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSL 157 (372)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 157 (372)
+|++|++++|.+++..+..+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++ ..++|+.|++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~-~l~-----~~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQ-ELL-----VGPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEE-EEE-----ECTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCC-CCC-----CCCCcCEEEC
Confidence 56666666666655445555566666666666665553332 555566666666666554 222 1255666666
Q ss_pred cCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCcccc-CCCCCCEEEccCCcccc
Q 035512 158 QENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFG-NLAVLELMSLAGNNLQE 236 (372)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~ 236 (372)
++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+. .++.|+.|++++|.+..
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~ 183 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD 183 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcccc
Confidence 66555543222 235555566665555544444555555556666655555544444443 45555566665555544
Q ss_pred cCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccc-cCCC
Q 035512 237 KIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFS-GFIP 315 (372)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~-~~~~ 315 (372)
.. ....+++|++|++++|.+++. |..+..+++|+.|++++|.+.+ ++. .+..++.|+.+++++|.+. +.++
T Consensus 184 ~~--~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~----lp~-~l~~l~~L~~L~l~~N~l~c~~~~ 255 (487)
T 3oja_A 184 VK--GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL----IEK-ALRFSQNLEHFDLRGNGFHCGTLR 255 (487)
T ss_dssp EE--CCCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE----ECT-TCCCCTTCCEEECTTCCBCHHHHH
T ss_pred cc--ccccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc----cch-hhccCCCCCEEEcCCCCCcCcchH
Confidence 31 122355556666665555533 2235555555555555555522 221 1333444444455555554 2334
Q ss_pred ccccCCCCCCEEecC
Q 035512 316 NTLGNLRNLERLNLG 330 (372)
Q Consensus 316 ~~~~~~~~L~~L~l~ 330 (372)
.++..++.|+.++++
T Consensus 256 ~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 256 DFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHHhCCCCcEEecc
Confidence 444445555544443
No 69
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=1.1e-23 Score=182.81 Aligned_cols=225 Identities=22% Similarity=0.239 Sum_probs=158.2
Q ss_pred EEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeeccc
Q 035512 106 VNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYND 185 (372)
Q Consensus 106 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 185 (372)
.+..+..++ .+|..+. ++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 12 ~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 12 YQCMELNFY-KIPDNLP--FSTKNLDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EECTTSCCS-SCCSSSC--TTCCEEECTTCCCC-EECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EEecCCCcc-ccCCCCC--CCccEEECCCCccc-ccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 333343443 3444442 56888888888887 5555455578888888888888876666677888888888888888
Q ss_pred CccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCccccc-CcccccCCCCCCEEEccCCccccccCc
Q 035512 186 FSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEK-IPPEIGNLRNLEELNLGDNKLVGTIPT 264 (372)
Q Consensus 186 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~ 264 (372)
+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+... .|..+..+++|++|++++|.+++..+.
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~ 167 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCT 167 (276)
T ss_dssp CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGG
T ss_pred cCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHH
Confidence 8766667778888888888888887766555677788888888888877654 467777788888888888887766666
Q ss_pred cccCcCCCC----EEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 265 AIFNVSKLK----ALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 265 ~~~~~~~L~----~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
.+..+++|+ +|++++|.+.+ ++...+.. .+|+.|++++|.+++..+..+..+++|++|++++|++....+
T Consensus 168 ~~~~l~~L~~l~l~L~ls~n~l~~----~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 168 DLRVLHQMPLLNLSLDLSLNPMNF----IQPGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp GGHHHHTCTTCCEEEECCSSCCCE----ECTTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred HhhhhhhccccceeeecCCCcccc----cCccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence 666666666 77777777732 22222222 256666777777776655566777777788887777765544
No 70
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=4.7e-23 Score=178.25 Aligned_cols=203 Identities=30% Similarity=0.364 Sum_probs=141.9
Q ss_pred CCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEc
Q 035512 78 SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSL 157 (372)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 157 (372)
+.+.++++++.++ .+|..+. +++++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 17 ~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~i~~~~~~~l~~L~~L~l 92 (270)
T 2o6q_A 17 NKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWV 92 (270)
T ss_dssp TTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCS-CCCTTTTSSCTTCCEEEC
T ss_pred CCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccC-eeChhhhcCCCCCCEEEC
Confidence 4667777777766 3444332 45667777766666555555666666666666666665 455444444555555555
Q ss_pred cCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCccccc
Q 035512 158 QENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEK 237 (372)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 237 (372)
++|.+. ...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+...
T Consensus 93 ~~n~l~------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 148 (270)
T 2o6q_A 93 TDNKLQ------------------------ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL 148 (270)
T ss_dssp CSSCCC------------------------CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred CCCcCC------------------------cCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence 555444 33333445555666666666666555555667777888888888888776
Q ss_pred CcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCcccc
Q 035512 238 IPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSG 312 (372)
Q Consensus 238 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 312 (372)
.+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+ ..++...+..+++|+.|++++|.+..
T Consensus 149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQL----KRVPEGAFDSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCC----SCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcC----CcCCHHHhccccCCCEEEecCCCeeC
Confidence 666788899999999999999877777899999999999999998 55666667788889999999998763
No 71
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.90 E-value=1.4e-23 Score=196.30 Aligned_cols=237 Identities=21% Similarity=0.160 Sum_probs=196.1
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.+++..|..|..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+
T Consensus 33 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~ 105 (487)
T 3oja_A 33 AWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLH 105 (487)
T ss_dssp GGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEE
T ss_pred CCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEE
Confidence 3489999999999998888899999999999999999985544 889999999999999987432 348999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchh-CCCCCCeeeccCCcc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIG-NLTKLKGLYLGANRL 210 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~ 210 (372)
+++|.+.+. +. ..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..+. .+++|+.|++++|.+
T Consensus 106 L~~N~l~~~-~~---~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 106 AANNNISRV-SC---SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CCSSCCCCE-EE---CCCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred CcCCcCCCC-Cc---cccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 999999843 32 2578999999999999988888889999999999999999887777665 789999999999999
Q ss_pred ccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCC
Q 035512 211 QGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIP 290 (372)
Q Consensus 211 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 290 (372)
.+..+ ...+++|+.|++++|.+....+ .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+.+.. .
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~---~ 254 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT---L 254 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH---H
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc---h
Confidence 86533 4468999999999999987544 58889999999999999984 6777899999999999999885211 1
Q ss_pred CcCcCccccccccccC
Q 035512 291 DFRLPNLEVLLLWDLE 306 (372)
Q Consensus 291 ~~~~~~l~~L~~l~l~ 306 (372)
...+..++.|+.++++
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 1123345555555664
No 72
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.90 E-value=5.9e-25 Score=196.49 Aligned_cols=266 Identities=21% Similarity=0.316 Sum_probs=194.1
Q ss_pred CCCcccceeecCCCCcEEEEEeCCCCccccccccccCC--CCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCC
Q 035512 39 SFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNL--SSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGA 116 (372)
Q Consensus 39 ~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~ 116 (372)
-|..|.++.+. ...++.++++++.+. +..+..+ ++++.|++++|.+.+..+. +..+++|++|++++|.+++.
T Consensus 35 vc~~W~~~~~~--~~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~ 108 (336)
T 2ast_B 35 VCKRWYRLASD--ESLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVS 108 (336)
T ss_dssp SCHHHHHHHTC--STTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHH
T ss_pred HHHHHHHHhcC--chhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHH
Confidence 34468877654 445889999998876 4456666 8999999999998865554 56789999999999988754
Q ss_pred -CCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCC-ccCcc-CCccCcCCCCCcEEEeecc-cCccc-cC
Q 035512 117 -LPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQEN-MFHGA-IPSNLSNCTYLRILSLAYN-DFSGA-IP 191 (372)
Q Consensus 117 -~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~-~~~~l~~l~~L~~L~l~~~-~~~~~-~~ 191 (372)
.+..+..+++|++|++++|.+.+..+..+. .+++|++|++++| .+.+. .+..+..+++|++|++++| .+++. .+
T Consensus 109 ~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~-~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~ 187 (336)
T 2ast_B 109 TLHGILSQCSKLQNLSLEGLRLSDPIVNTLA-KNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 187 (336)
T ss_dssp HHHHHHTTBCCCSEEECTTCBCCHHHHHHHT-TCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHH
T ss_pred HHHHHHhhCCCCCEEeCcCcccCHHHHHHHh-cCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHH
Confidence 666788899999999999988765665554 6899999999988 56542 4455677888999999988 77643 45
Q ss_pred cchhCCC-CCCeeeccCCc--cc-cccCccccCCCCCCEEEccCCc-ccccCcccccCCCCCCEEEccCCc-cccccCcc
Q 035512 192 REIGNLT-KLKGLYLGANR--LQ-GEIPREFGNLAVLELMSLAGNN-LQEKIPPEIGNLRNLEELNLGDNK-LVGTIPTA 265 (372)
Q Consensus 192 ~~~~~~~-~L~~L~l~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~ 265 (372)
..+..++ +|++|++++|. ++ ..++..+..+++|+.|++++|. ++...+..+..+++|++|++++|. +.......
T Consensus 188 ~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 267 (336)
T 2ast_B 188 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE 267 (336)
T ss_dssp HHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG
T ss_pred HHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH
Confidence 5677888 89999998883 44 3445566778888888888888 565666677888888888888884 33333335
Q ss_pred ccCcCCCCEEeccCCccccccCCCCCcCcCcc-ccccccccCCCccccCCCcccc
Q 035512 266 IFNVSKLKALKLYSNSLLGSLSSIPDFRLPNL-EVLLLWDLENNSFSGFIPNTLG 319 (372)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l-~~L~~l~l~~~~~~~~~~~~~~ 319 (372)
+.++++|++|++++| + +...+..+ ..++.|++++|.+++..|..+.
T Consensus 268 l~~~~~L~~L~l~~~-i-------~~~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 268 LGEIPTLKTLQVFGI-V-------PDGTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp GGGCTTCCEEECTTS-S-------CTTCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred HhcCCCCCEEeccCc-c-------CHHHHHHHHhhCcceEEecccCccccCCccc
Confidence 777888888888887 3 22223333 2355557888888776665554
No 73
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.90 E-value=3.5e-23 Score=179.19 Aligned_cols=205 Identities=24% Similarity=0.241 Sum_probs=100.5
Q ss_pred cCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCC
Q 035512 122 FNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLK 201 (372)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 201 (372)
..+++|+.|+++++.+. .++. +..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~-~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIK-SVQG--IQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCC-CCTT--GGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCcc-cccc--cccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 34556666666666554 3322 22455666666665555432 2344555555555555554443333344445555
Q ss_pred eeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCc
Q 035512 202 GLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNS 281 (372)
Q Consensus 202 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~ 281 (372)
+|++++|.+. ...+..+..+++|++|++++|.+++..+..+.++++|++|++++|.
T Consensus 113 ~L~L~~n~l~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 168 (272)
T 3rfs_A 113 ELVLVENQLQ------------------------SLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQ 168 (272)
T ss_dssp EEECTTSCCC------------------------CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCC------------------------ccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCC
Confidence 5555555444 4333344444455555555554444434444445555555555554
Q ss_pred cccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCC
Q 035512 282 LLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNN 361 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 361 (372)
+ ..++...+..+++|+.|++++|.+++..+..+..+++|+.|++++|++.+ .+++|+.|++.+|
T Consensus 169 l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 169 L----QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------------TCPGIRYLSEWIN 232 (272)
T ss_dssp C----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC------------CTTTTHHHHHHHH
T ss_pred c----CccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc------------cCcHHHHHHHHHH
Confidence 4 22333333444444444555555554444445555555555555554421 2344555555555
Q ss_pred cccccCCCCC
Q 035512 362 PLDGILPKTF 371 (372)
Q Consensus 362 ~l~~~~p~~~ 371 (372)
.+++.+|.++
T Consensus 233 ~~~g~ip~~~ 242 (272)
T 3rfs_A 233 KHSGVVRNSA 242 (272)
T ss_dssp HTGGGBBCTT
T ss_pred hCCCcccCcc
Confidence 5555555443
No 74
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.90 E-value=1.4e-21 Score=186.75 Aligned_cols=243 Identities=28% Similarity=0.314 Sum_probs=197.0
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
.++++.|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|++++|.++.. +. .+++|+.|+
T Consensus 60 ~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~ 127 (622)
T 3g06_A 60 PAHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLW 127 (622)
T ss_dssp CTTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEE
T ss_pred CCCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEE
Confidence 368999999999998 4554 5789999999999998 4555 789999999999998853 43 578999999
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+++|.+. .+|. .+++|++|++++|.+.+. +. ..++|+.|++++|.+.. ++ ..+++|+.|++++|.+.
T Consensus 128 L~~N~l~-~lp~----~l~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~ 194 (622)
T 3g06_A 128 IFGNQLT-SLPV----LPPGLQELSVSDNQLASL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLA 194 (622)
T ss_dssp CCSSCCS-CCCC----CCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS
T ss_pred CCCCCCC-cCCC----CCCCCCEEECcCCcCCCc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCC
Confidence 9999988 5665 468999999999998753 32 35789999999999885 33 45688999999999987
Q ss_pred cccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCC
Q 035512 212 GEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPD 291 (372)
Q Consensus 212 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 291 (372)
+ ++. ..++|+.|++++|.+... +. .+++|++|++++|.+++ +| ..+++|++|++++|.+ ..++.
T Consensus 195 ~-l~~---~~~~L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L----~~lp~ 258 (622)
T 3g06_A 195 S-LPT---LPSELYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRL----TSLPM 258 (622)
T ss_dssp C-CCC---CCTTCCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCC----SCCCC
T ss_pred C-CCC---ccchhhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCC----CcCCc
Confidence 4 333 347899999999998753 32 34789999999999985 44 4568999999999998 44554
Q ss_pred cCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCC
Q 035512 292 FRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 292 ~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 340 (372)
.+.+|+.|++++|.++ .+|..+..+++|+.|+|++|++.+..+.
T Consensus 259 ----~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 259 ----LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp ----CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred ----ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 3456666799999999 5677899999999999999998876554
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=4.4e-22 Score=173.68 Aligned_cols=198 Identities=28% Similarity=0.314 Sum_probs=103.3
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
++++.++++++.++ .+|..+. +++++|++++|.+++..+..+..+++|++|++++|.++...+ ...
T Consensus 10 ~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~--------- 75 (290)
T 1p9a_G 10 ASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGT--------- 75 (290)
T ss_dssp TTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSC---------
T ss_pred CCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCC---------
Confidence 34555555555554 2332222 345555555555554444445555555555555554443211 134
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCcccc
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
+++|+.|++++|.+. .++..+..+++|++|++++|.++...+..+..+++|++|++++|.+.+
T Consensus 76 ----------------l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 76 ----------------LPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp ----------------CTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred ----------------CCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 444455555444443 233344455555555555555554444445555555555555555554
Q ss_pred ccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
..+..+..+++|+.|++++|.+....+..+..+++|++|++++|++. .+|..+...++|+.+++++|++
T Consensus 139 ~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 139 LPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp CCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCB
T ss_pred cChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCc
Confidence 44444555566666666666665544445555666666666666665 4455555556666666666665
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.89 E-value=6.4e-22 Score=172.67 Aligned_cols=204 Identities=26% Similarity=0.239 Sum_probs=157.5
Q ss_pred ccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCC
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 200 (372)
+..++++++++++++.+. .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.+..... ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--CSCCTTC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--CCCCCcC
Confidence 566788899999988887 6776543 678888998888887777778888888888888888775433 2677888
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
++|++++|.+. .++..+..+++|+.|++++|.++...+..|..+++|++|++++|.+.+..+..|.++++|+.|++++|
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 158 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANN 158 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCC
Confidence 88888888876 55666777888888888888887766677888888888888888887666666778888888888888
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCcccc
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
++ ..++...|..+++|+.|++++|+++ .+|..+..+++|+.|++++|++..
T Consensus 159 ~l----~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 159 NL----TELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp CC----SCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred cC----CccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 77 4566666677777777788888887 455566667788888888887654
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.89 E-value=2.4e-22 Score=173.94 Aligned_cols=200 Identities=24% Similarity=0.247 Sum_probs=113.8
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
..+++|+.|+++++.++. ...+..+++|++|++++|.+++. ..+..+++|++|++++|.+. .++...+..+++|+
T Consensus 38 ~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 38 NELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCC
T ss_pred ccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccC-ccChhHhcCCcCCC
Confidence 344555555555555441 12345555555555555555431 24555555555555555555 34444444555566
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCc
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (372)
+|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 66666555554444445556666666666665554444445566666666666666655555555666666666666666
Q ss_pred ccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccc
Q 035512 234 LQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGS 285 (372)
Q Consensus 234 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 285 (372)
+....+..+..+++|++|++++|++. +.+++|+.++++.|.+.+.
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~l~~~~n~~~g~ 237 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 237 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBC-------CCTTTTHHHHHHHHHTGGG
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcc-------ccCcHHHHHHHHHHhCCCc
Confidence 66555555666677777777776554 2355666666666666443
No 78
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=4.1e-22 Score=170.42 Aligned_cols=189 Identities=24% Similarity=0.314 Sum_probs=129.0
Q ss_pred CCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCC
Q 035512 38 ISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGAL 117 (372)
Q Consensus 38 ~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~ 117 (372)
.+|+.|.|+.|. ...+.++++++.++ .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+++..
T Consensus 2 ~~Cp~~~gC~C~---~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 75 (251)
T 3m19_A 2 KTCETVTGCTCN---EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLS 75 (251)
T ss_dssp --CHHHHSSEEE---GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCC
T ss_pred ccCCCCCceEcC---CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccC
Confidence 357789999994 35678999999997 5565444 58999999999998777778889999999999999888777
Q ss_pred CccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCC
Q 035512 118 PSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNL 197 (372)
Q Consensus 118 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 197 (372)
+..+..+++|++|++++|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+..+
T Consensus 76 ~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 154 (251)
T 3m19_A 76 AGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154 (251)
T ss_dssp TTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC
T ss_pred HhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcC
Confidence 777888888888888888887 5666555667777777777777765555555566666666666666554443344555
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCEEEccCCc
Q 035512 198 TKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233 (372)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (372)
++|+.|++++|.+.+..+..+..+++|+.|++++|.
T Consensus 155 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 155 TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190 (251)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCC
T ss_pred cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCc
Confidence 555555555555443333333344444444444433
No 79
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=2.6e-24 Score=194.13 Aligned_cols=258 Identities=18% Similarity=0.208 Sum_probs=183.5
Q ss_pred EEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCC----ccccCCC-CCCEEEccCCccccccChhhhc---C-CCC
Q 035512 81 SLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALP----SFIFNKS-SLQHLDFTFNTLSGEIPANICS---N-LPF 151 (372)
Q Consensus 81 ~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~---~-l~~ 151 (372)
.+.++++.+++.++..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+.+..+..+.. . .++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788899887777766777779999999999987665 6777888 8999999999998554444432 2 389
Q ss_pred ccEEEccCCccCccCCcc----CcCC-CCCcEEEeecccCccccCcch----hC-CCCCCeeeccCCcccccc----Ccc
Q 035512 152 LEILSLQENMFHGAIPSN----LSNC-TYLRILSLAYNDFSGAIPREI----GN-LTKLKGLYLGANRLQGEI----PRE 217 (372)
Q Consensus 152 L~~L~l~~~~~~~~~~~~----l~~l-~~L~~L~l~~~~~~~~~~~~~----~~-~~~L~~L~l~~~~~~~~~----~~~ 217 (372)
|++|++++|.+.+..+.. +..+ ++|++|++++|.++...+..+ .. ..+|++|++++|.+.+.. +..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987654443 3444 789999999998876554433 33 358999999999887433 334
Q ss_pred ccCCC-CCCEEEccCCcccccCccc----ccCC-CCCCEEEccCCccccc----cCccccC-cCCCCEEeccCCcccccc
Q 035512 218 FGNLA-VLELMSLAGNNLQEKIPPE----IGNL-RNLEELNLGDNKLVGT----IPTAIFN-VSKLKALKLYSNSLLGSL 286 (372)
Q Consensus 218 l~~~~-~L~~L~l~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~----~~~~~~~-~~~L~~L~l~~~~~~~~~ 286 (372)
+...+ +|++|++++|.+....+.. +..+ ++|++|++++|.+.+. ++..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45554 8999999999887766543 3445 5899999999988753 3444544 458999999999874322
Q ss_pred CCCCCcCcCccccccccccCCCccccC-------CCccccCCCCCCEEecCCCccccCC
Q 035512 287 SSIPDFRLPNLEVLLLWDLENNSFSGF-------IPNTLGNLRNLERLNLGDNYLTSST 338 (372)
Q Consensus 287 ~~~~~~~~~~l~~L~~l~l~~~~~~~~-------~~~~~~~~~~L~~L~l~~n~~~~~~ 338 (372)
...-...+..+++|+.|++++|.+.+. ++..+..+++|+.|++++|++....
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~ 300 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSH 300 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcc
Confidence 110012345667777778888884432 2335667788888888888876553
No 80
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=6.1e-22 Score=168.10 Aligned_cols=197 Identities=18% Similarity=0.193 Sum_probs=157.5
Q ss_pred CCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc-ccCCCCccccCCCCCCEEEccC-CccccccChhhhcCCCCccE
Q 035512 77 SSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ-LSGALPSFIFNKSSLQHLDFTF-NTLSGEIPANICSNLPFLEI 154 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~ 154 (372)
+++++|++++|.+++..+..+..+++|++|++++|. ++...+..|.++++|++|++++ |.+. .++...+..+++|++
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~ 109 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF 109 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence 378888888888886666678888889999998886 7766666788888999999988 7887 677666678889999
Q ss_pred EEccCCccCccCCccCcCCCCCc---EEEeecc-cCccccCcchhCCCCCC-eeeccCCccccccCccccCCCCCCEEEc
Q 035512 155 LSLQENMFHGAIPSNLSNCTYLR---ILSLAYN-DFSGAIPREIGNLTKLK-GLYLGANRLQGEIPREFGNLAVLELMSL 229 (372)
Q Consensus 155 L~l~~~~~~~~~~~~l~~l~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l 229 (372)
|++++|.+.+ ++. +..+++|+ +|++++| .+....+..+..+++|+ .|++++|.+....+..+.. ++|+.|++
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEc
Confidence 9998888875 443 77777787 9999998 88766666788899999 9999999887544445555 78999999
Q ss_pred cCCc-ccccCcccccCC-CCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 230 AGNN-LQEKIPPEIGNL-RNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 230 ~~~~-~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
++|. +....+..+..+ ++|++|++++|.+++..+. .+++|+.|++.++
T Consensus 187 ~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 187 NKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNT 236 (239)
T ss_dssp TTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC
T ss_pred CCCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCc
Confidence 9995 877777788888 9999999999998754333 5788999998876
No 81
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1e-23 Score=190.20 Aligned_cols=256 Identities=19% Similarity=0.155 Sum_probs=180.0
Q ss_pred EEeCCCCccccccccccCCCCCCEEECCCCcCCCCCC----hhhhCCC-CCCEEEcccccccCCCCccccCC-----CCC
Q 035512 58 LNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIP----SAIFTTY-TLKYVNLRQNQLSGALPSFIFNK-----SSL 127 (372)
Q Consensus 58 l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~----~~~~~l~-~L~~L~l~~~~~~~~~~~~l~~l-----~~L 127 (372)
++++++.+++.+|..+...++|++|++++|.+++..+ ..+..++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5678888887777776777779999999998886655 6677788 89999999988887666555553 889
Q ss_pred CEEEccCCccccccChhh---hcCC-CCccEEEccCCccCccCCcc----CcC-CCCCcEEEeecccCcccc----Ccch
Q 035512 128 QHLDFTFNTLSGEIPANI---CSNL-PFLEILSLQENMFHGAIPSN----LSN-CTYLRILSLAYNDFSGAI----PREI 194 (372)
Q Consensus 128 ~~L~l~~~~~~~~~~~~~---~~~l-~~L~~L~l~~~~~~~~~~~~----l~~-l~~L~~L~l~~~~~~~~~----~~~~ 194 (372)
++|++++|.+.+..+..+ +..+ ++|++|++++|.+.+..+.. +.. .++|++|++++|.+.... +..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 999999998875444432 2234 78999999998887554433 333 358999999998887533 2334
Q ss_pred hCCC-CCCeeeccCCccccccCc----cccCC-CCCCEEEccCCcccccC----cccccC-CCCCCEEEccCCccccccC
Q 035512 195 GNLT-KLKGLYLGANRLQGEIPR----EFGNL-AVLELMSLAGNNLQEKI----PPEIGN-LRNLEELNLGDNKLVGTIP 263 (372)
Q Consensus 195 ~~~~-~L~~L~l~~~~~~~~~~~----~l~~~-~~L~~L~l~~~~~~~~~----~~~l~~-~~~L~~L~l~~~~~~~~~~ 263 (372)
...+ +|++|++++|.+.+..+. .+..+ ++|++|++++|.+.... +..+.. .++|++|++++|.+.+..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4555 899999999988755543 33445 58999999999887633 333433 4689999999998875433
Q ss_pred ----ccccCcCCCCEEeccCCcccc---ccCCCCCcCcCccccccccccCCCccccC
Q 035512 264 ----TAIFNVSKLKALKLYSNSLLG---SLSSIPDFRLPNLEVLLLWDLENNSFSGF 313 (372)
Q Consensus 264 ----~~~~~~~~L~~L~l~~~~~~~---~~~~~~~~~~~~l~~L~~l~l~~~~~~~~ 313 (372)
..+..+++|++|++++|.+.+ .....-...++.+++|+.+++++|.+.+.
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 345677899999999988421 10000112456778888889999988754
No 82
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.87 E-value=4.4e-23 Score=184.30 Aligned_cols=252 Identities=19% Similarity=0.212 Sum_probs=177.8
Q ss_pred CCCCEEECCCCcCCCCCChhhhCC--CCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccE
Q 035512 77 SSLQSLNLSFNRLSGSIPSAIFTT--YTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEI 154 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~~~~~l--~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~ 154 (372)
..++.++++++.+. +..+..+ ++++.|+++++.+.+..+. +..+++|++|++++|.+.+......+..+++|++
T Consensus 47 ~~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~ 122 (336)
T 2ast_B 47 SLWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQN 122 (336)
T ss_dssp TTSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSE
T ss_pred hhheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCE
Confidence 35889999998876 4566666 8899999999998866554 5678999999999998875423344558999999
Q ss_pred EEccCCccCccCCccCcCCCCCcEEEeecc-cCccc-cCcchhCCCCCCeeeccCC-ccccc-cCccccCCC-CCCEEEc
Q 035512 155 LSLQENMFHGAIPSNLSNCTYLRILSLAYN-DFSGA-IPREIGNLTKLKGLYLGAN-RLQGE-IPREFGNLA-VLELMSL 229 (372)
Q Consensus 155 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~-~~~~~-~~~~~~~~~~L~~L~l~~~-~~~~~-~~~~l~~~~-~L~~L~l 229 (372)
|++++|.+.+..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. .+..+..++ +|++|++
T Consensus 123 L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l 202 (336)
T 2ast_B 123 LSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 202 (336)
T ss_dssp EECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEEC
T ss_pred EeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEe
Confidence 999999887666667778899999999988 56542 4555778888999999988 77643 455677788 8888888
Q ss_pred cCCc--cc-ccCcccccCCCCCCEEEccCCc-cccccCccccCcCCCCEEeccCCc-cccccCCCCCcCcCccccccccc
Q 035512 230 AGNN--LQ-EKIPPEIGNLRNLEELNLGDNK-LVGTIPTAIFNVSKLKALKLYSNS-LLGSLSSIPDFRLPNLEVLLLWD 304 (372)
Q Consensus 230 ~~~~--~~-~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~l~~L~~l~ 304 (372)
++|. ++ ...+..+..+++|++|++++|. +++..+..+.++++|++|++++|. +.+. ....+.++++|+.|+
T Consensus 203 ~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~ 278 (336)
T 2ast_B 203 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPE----TLLELGEIPTLKTLQ 278 (336)
T ss_dssp CSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGG----GGGGGGGCTTCCEEE
T ss_pred CCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHH----HHHHHhcCCCCCEEe
Confidence 8883 43 3345566678888888888887 665666677888888888888874 2111 111234555666667
Q ss_pred cCCCccccCCCccccCC-CCCCEEecCCCccccCCCC
Q 035512 305 LENNSFSGFIPNTLGNL-RNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 305 l~~~~~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~ 340 (372)
+++| ++.. .+..+ .++..|++++|.+++..+.
T Consensus 279 l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~ 311 (336)
T 2ast_B 279 VFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP 311 (336)
T ss_dssp CTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred ccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence 7766 3321 22222 2355555666666665554
No 83
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.87 E-value=3e-24 Score=195.54 Aligned_cols=141 Identities=18% Similarity=0.231 Sum_probs=68.8
Q ss_pred CCCCeeeccCCcccc-ccC---ccccCCCCCCEEEccCCcccc-----cCcccccCCCCCCEEEccCCccc----cccCc
Q 035512 198 TKLKGLYLGANRLQG-EIP---REFGNLAVLELMSLAGNNLQE-----KIPPEIGNLRNLEELNLGDNKLV----GTIPT 264 (372)
Q Consensus 198 ~~L~~L~l~~~~~~~-~~~---~~l~~~~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~~~~~----~~~~~ 264 (372)
++|++|++++|.+.. ..+ ..+..+++|++|++++|.+.. ..+..+..+++|++|++++|.++ ..++.
T Consensus 159 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~ 238 (386)
T 2ca6_A 159 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238 (386)
T ss_dssp CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred CCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH
Confidence 555555555555441 112 234445555666665555542 12224455566666666666553 23444
Q ss_pred cccCcCCCCEEeccCCccccccCCCCCcCc--CccccccccccCCCcccc----CCCccc-cCCCCCCEEecCCCccccC
Q 035512 265 AIFNVSKLKALKLYSNSLLGSLSSIPDFRL--PNLEVLLLWDLENNSFSG----FIPNTL-GNLRNLERLNLGDNYLTSS 337 (372)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~--~~l~~L~~l~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~n~~~~~ 337 (372)
.+..+++|++|++++|.+.+.....-...+ .++++|+.|++++|.+++ .++..+ .++++|+.|++++|++++.
T Consensus 239 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~ 318 (386)
T 2ca6_A 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEE 318 (386)
T ss_dssp HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTT
T ss_pred HHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcc
Confidence 555566666666666655322100000011 113444445666666554 234333 4456666666666666544
Q ss_pred C
Q 035512 338 T 338 (372)
Q Consensus 338 ~ 338 (372)
.
T Consensus 319 ~ 319 (386)
T 2ca6_A 319 D 319 (386)
T ss_dssp S
T ss_pred h
Confidence 4
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=1.7e-21 Score=165.29 Aligned_cols=197 Identities=16% Similarity=0.241 Sum_probs=123.1
Q ss_pred CccEEEccCCccCccCCccCcCCCCCcEEEeeccc-CccccCcchhCCCCCCeeeccC-CccccccCccccCCCCCCEEE
Q 035512 151 FLEILSLQENMFHGAIPSNLSNCTYLRILSLAYND-FSGAIPREIGNLTKLKGLYLGA-NRLQGEIPREFGNLAVLELMS 228 (372)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~ 228 (372)
+++.|++++|.+.+..+..+..+++|++|++++|. +....+..+..+++|++|++++ |.+....+..+.++++|++|+
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~ 111 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG 111 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence 44444444444443333344455555555555553 4433334455555556666655 555544445555666666666
Q ss_pred ccCCcccccCcccccCCCCCC---EEEccCC-ccccccCccccCcCCCC-EEeccCCccccccCCCCCcCcCcccccccc
Q 035512 229 LAGNNLQEKIPPEIGNLRNLE---ELNLGDN-KLVGTIPTAIFNVSKLK-ALKLYSNSLLGSLSSIPDFRLPNLEVLLLW 303 (372)
Q Consensus 229 l~~~~~~~~~~~~l~~~~~L~---~L~l~~~-~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l 303 (372)
+++|.+.. .|. +..+++|+ +|++++| .+.+..+..|.++++|+ +|++++|++ ..++...+.. .+|+.|
T Consensus 112 l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l----~~i~~~~~~~-~~L~~L 184 (239)
T 2xwt_C 112 IFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGF----TSVQGYAFNG-TKLDAV 184 (239)
T ss_dssp EEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCC----CEECTTTTTT-CEEEEE
T ss_pred CCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCC----cccCHhhcCC-CCCCEE
Confidence 66666554 333 55666666 7777777 77666666677778888 888888777 3344444444 567777
Q ss_pred ccCCCc-cccCCCccccCC-CCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCc
Q 035512 304 DLENNS-FSGFIPNTLGNL-RNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 304 ~l~~~~-~~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
++++|+ ++...+..+..+ ++|+.|++++|.+...++. .+++|+.|+++++.
T Consensus 185 ~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~--------~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 185 YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK--------GLEHLKELIARNTW 237 (239)
T ss_dssp ECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT--------TCTTCSEEECTTC-
T ss_pred EcCCCCCcccCCHHHhhccccCCcEEECCCCccccCChh--------HhccCceeeccCcc
Confidence 888884 776666778888 8899999999888765543 56788888888764
No 85
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.86 E-value=9.7e-21 Score=161.86 Aligned_cols=184 Identities=26% Similarity=0.283 Sum_probs=137.6
Q ss_pred CCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEc
Q 035512 150 PFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSL 229 (372)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 229 (372)
...+.++++++.+. .+|..+. +.++.|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 34677888887776 3444333 57888888888887766667788888888888888887776777778888888888
Q ss_pred cCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCc
Q 035512 230 AGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNS 309 (372)
Q Consensus 230 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~ 309 (372)
++|.+....+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+ ..++...+..+++|+.|++++|+
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~ 166 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL----QSIPAGAFDKLTNLQTLSLSTNQ 166 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----CCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcC----CccCHHHcCcCcCCCEEECCCCc
Confidence 88888776667777788888888888888766666677788888888888877 45555556677777777888888
Q ss_pred cccCCCccccCCCCCCEEecCCCccccCCCC
Q 035512 310 FSGFIPNTLGNLRNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 310 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 340 (372)
+++..+..+..+++|+.|++++|++......
T Consensus 167 l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 167 LQSVPHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CCccCHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 8766666777778888888888877665443
No 86
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.86 E-value=1.9e-21 Score=171.58 Aligned_cols=230 Identities=17% Similarity=0.167 Sum_probs=131.4
Q ss_pred CCCCEEECCCCcCCCCCCh---hhhCCCCCCEEEcccccccCCCCccc--cCCCCCCEEEccCCccccccC---hhhhcC
Q 035512 77 SSLQSLNLSFNRLSGSIPS---AIFTTYTLKYVNLRQNQLSGALPSFI--FNKSSLQHLDFTFNTLSGEIP---ANICSN 148 (372)
Q Consensus 77 ~~L~~L~l~~~~~~~~~~~---~~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~---~~~~~~ 148 (372)
..++.+.+.++.+...... .+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ...+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 3567777777766532111 12234568888888888877777766 777888888888887764333 122225
Q ss_pred CCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccc--c--CcchhCCCCCCeeeccCCccccccCccccCCCCC
Q 035512 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGA--I--PREIGNLTKLKGLYLGANRLQGEIPREFGNLAVL 224 (372)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 224 (372)
+++|++|++++|.+.+..+..+..+++|++|++++|.+.+. . ...+..+++|++|++++|.++.. +..
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~------- 215 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETP-TGV------- 215 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCH-HHH-------
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCch-HHH-------
Confidence 77777777777777666666677777777777777765421 1 12234555666666666655311 110
Q ss_pred CEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCc---CCCCEEeccCCccccccCCCCCcCcCcccccc
Q 035512 225 ELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNV---SKLKALKLYSNSLLGSLSSIPDFRLPNLEVLL 301 (372)
Q Consensus 225 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 301 (372)
....+..+++|++|++++|.+.+..|..+..+ ++|++|++++|++ ..++...+ ++|+
T Consensus 216 -------------~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l----~~lp~~~~---~~L~ 275 (310)
T 4glp_A 216 -------------CAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGL----EQVPKGLP---AKLR 275 (310)
T ss_dssp -------------HHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCC----CSCCSCCC---SCCS
T ss_pred -------------HHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCC----Cchhhhhc---CCCC
Confidence 00012344455555555555544434344333 4666666666655 22333222 3444
Q ss_pred ccccCCCccccCCCccccCCCCCCEEecCCCcccc
Q 035512 302 LWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 302 ~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
.|++++|++++. |. +..+++|+.|++++|+++.
T Consensus 276 ~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 276 VLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred EEECCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 457777766643 22 4566777777777777653
No 87
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=7.4e-23 Score=186.38 Aligned_cols=230 Identities=20% Similarity=0.247 Sum_probs=107.7
Q ss_pred CcEEEEEeCCCCcccccc----ccccCCCCCCEEECCCCcC---CCCCChhh-------hCCCCCCEEEcccccccC---
Q 035512 53 HRVTVLNISGLNLTGTIP----SQLGNLSSLQSLNLSFNRL---SGSIPSAI-------FTTYTLKYVNLRQNQLSG--- 115 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~----~~~~~l~~L~~L~l~~~~~---~~~~~~~~-------~~l~~L~~L~l~~~~~~~--- 115 (372)
++++.|++++|.++...+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++|.+..
T Consensus 32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~ 111 (386)
T 2ca6_A 32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQ 111 (386)
T ss_dssp SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTH
T ss_pred CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHH
Confidence 345566666665554322 2244556666666655432 22233332 455556666666655554
Q ss_pred -CCCccccCCCCCCEEEccCCccccccChhhhc---CC---------CCccEEEccCCccCc-cCC---ccCcCCCCCcE
Q 035512 116 -ALPSFIFNKSSLQHLDFTFNTLSGEIPANICS---NL---------PFLEILSLQENMFHG-AIP---SNLSNCTYLRI 178 (372)
Q Consensus 116 -~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~---~l---------~~L~~L~l~~~~~~~-~~~---~~l~~l~~L~~ 178 (372)
..+..+..+++|++|++++|.+.+..+..+.. .+ ++|++|++++|.+.. ..+ ..+..+++|++
T Consensus 112 ~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~ 191 (386)
T 2ca6_A 112 EPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT 191 (386)
T ss_dssp HHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE
T ss_pred HHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE
Confidence 23334455556666666665554222211111 12 555555555555541 111 23334455555
Q ss_pred EEeecccCccc-----cCcchhCCCCCCeeeccCCccc----cccCccccCCCCCCEEEccCCccccc----Cccccc--
Q 035512 179 LSLAYNDFSGA-----IPREIGNLTKLKGLYLGANRLQ----GEIPREFGNLAVLELMSLAGNNLQEK----IPPEIG-- 243 (372)
Q Consensus 179 L~l~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~----~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~-- 243 (372)
|++++|.+... .+..+..+++|+.|++++|.++ ..++..+..+++|+.|++++|.+... ++..+.
T Consensus 192 L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~ 271 (386)
T 2ca6_A 192 VKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKL 271 (386)
T ss_dssp EECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTC
T ss_pred EECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhc
Confidence 55555554421 1113445555555555555543 23334444555555555555554432 222332
Q ss_pred CCCCCCEEEccCCcccc----ccCccc-cCcCCCCEEeccCCcc
Q 035512 244 NLRNLEELNLGDNKLVG----TIPTAI-FNVSKLKALKLYSNSL 282 (372)
Q Consensus 244 ~~~~L~~L~l~~~~~~~----~~~~~~-~~~~~L~~L~l~~~~~ 282 (372)
.+++|++|++++|.++. .++..+ .++++|++|++++|.+
T Consensus 272 ~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l 315 (386)
T 2ca6_A 272 ENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315 (386)
T ss_dssp SSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBS
T ss_pred cCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcC
Confidence 24555555555555543 233333 3345555555555554
No 88
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=7.9e-21 Score=167.33 Aligned_cols=188 Identities=24% Similarity=0.388 Sum_probs=90.9
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.|+++++.++. ++ .+..+++|++|++++|.+++ ++. +..+++|++|++++|.+++. ..+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~-~~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITD-LAP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCC-Chh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEEECC
Confidence 45555555555442 22 24445555555555555442 222 44455555555555544421 234444444444444
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
+|.+. .++. +..+++|++|++++|.+....+ +..+++|+.|++++|.+.+.
T Consensus 116 ~n~l~-~~~~--------------------------l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 116 STQIT-DVTP--------------------------LAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp TSCCC-CCGG--------------------------GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCC-Cchh--------------------------hcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 44443 2221 4444555555555554442211 44555555555555554432
Q ss_pred cCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 214 IPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
.+ +..+++|+.|++++|.+....+ +..+++|++|++++|.+.+.. .+..+++|+.|++++|++
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i 229 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTI 229 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEE
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCee
Confidence 21 4455555555555555543322 455556666666666655332 255566666666666655
No 89
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=6.5e-21 Score=167.89 Aligned_cols=198 Identities=26% Similarity=0.325 Sum_probs=158.1
Q ss_pred ccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCC
Q 035512 121 IFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200 (372)
Q Consensus 121 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 200 (372)
...+++|++|+++++.+. .++. +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|
T Consensus 37 ~~~l~~L~~L~l~~~~i~-~l~~--~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L 109 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVT-TIEG--VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSI 109 (308)
T ss_dssp HHHHHTCCEEECTTSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTC
T ss_pred HHHcCCcCEEEeeCCCcc-Cchh--hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCC
Confidence 345789999999999887 5653 4479999999999998875544 88899999999999988743 368889999
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
++|++++|.+.+. + .+..+++|+.|++++|.+....+ +..+++|++|++++|.+.+..+ +..+++|+.|++++|
T Consensus 110 ~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n 183 (308)
T 1h6u_A 110 KTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDN 183 (308)
T ss_dssp CEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCC
Confidence 9999999988753 2 37888999999999998876433 7788999999999998875433 788899999999999
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
.+. .++. +..+++|+.|++++|.+.+.. .+..+++|+.|++++|++...+.
T Consensus 184 ~l~----~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 184 KIS----DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp CCC----CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEECCCE
T ss_pred ccC----cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeecCCe
Confidence 883 3332 567778888899999988654 37888999999999998876444
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.85 E-value=2.6e-21 Score=170.77 Aligned_cols=229 Identities=15% Similarity=0.127 Sum_probs=163.1
Q ss_pred CCCEEEccCCccccccChhh--hcCCCCccEEEccCCccCccCCccC--cCCCCCcEEEeecccCccccC----cchhCC
Q 035512 126 SLQHLDFTFNTLSGEIPANI--CSNLPFLEILSLQENMFHGAIPSNL--SNCTYLRILSLAYNDFSGAIP----REIGNL 197 (372)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~--~~~l~~L~~L~l~~~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~----~~~~~~ 197 (372)
.++.+.+.++.+.......+ +..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 35555555555432111111 1134568888888888777766666 778888888888888775333 234568
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCEEEccCCccccc----CcccccCCCCCCEEEccCCcccccc--Cc-cccCcC
Q 035512 198 TKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEK----IPPEIGNLRNLEELNLGDNKLVGTI--PT-AIFNVS 270 (372)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~--~~-~~~~~~ 270 (372)
++|++|++++|.+.+..+..+..+++|++|++++|.+... .+..+..+++|++|++++|.++... +. .+..++
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~ 224 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCAALAAAGV 224 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHHHHHHHTC
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHHHHHhcCC
Confidence 8899999999998877778888999999999999986532 1233467899999999999986321 11 356789
Q ss_pred CCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCC
Q 035512 271 KLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNF 350 (372)
Q Consensus 271 ~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~ 350 (372)
+|++|++++|.+.+..... ...+..+++|+.|++++|+++ .+|..+. ++|++|++++|.+.+.+. +..+
T Consensus 225 ~L~~L~Ls~N~l~~~~p~~-~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~-------~~~l 293 (310)
T 4glp_A 225 QPHSLDLSHNSLRATVNPS-APRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ-------PDEL 293 (310)
T ss_dssp CCSSEECTTSCCCCCCCSC-CSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC-------TTSC
T ss_pred CCCEEECCCCCCCccchhh-HHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch-------hhhC
Confidence 9999999999985431110 112222367888899999999 4565553 899999999999987532 4678
Q ss_pred CCCcEEeCcCCcccc
Q 035512 351 KSLTHIVLSNNPLDG 365 (372)
Q Consensus 351 ~~L~~L~l~~~~l~~ 365 (372)
++|+.|++++|++++
T Consensus 294 ~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 294 PEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCCSCEECSSTTTSC
T ss_pred CCccEEECcCCCCCC
Confidence 999999999999975
No 91
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.85 E-value=4.1e-23 Score=198.61 Aligned_cols=306 Identities=13% Similarity=0.126 Sum_probs=181.8
Q ss_pred CCcEEEEEeCCCCcccc----ccccccCCCCCCEEECCCCcCCCC----CChhhhCCCCCCEEEcccccccCCCCccccC
Q 035512 52 RHRVTVLNISGLNLTGT----IPSQLGNLSSLQSLNLSFNRLSGS----IPSAIFTTYTLKYVNLRQNQLSGALPSFIFN 123 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~----~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~ 123 (372)
.+++++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+.+ .+..+..
T Consensus 163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~ 241 (592)
T 3ogk_B 163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKA 241 (592)
T ss_dssp CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHH
T ss_pred CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhh
Confidence 46788899998887654 334456778888888888887632 33445578888888888887653 3445555
Q ss_pred CCCCCEEEccCCccc--------------------------cccChhhhcCCCCccEEEccCCccCccCC-ccCcCCCCC
Q 035512 124 KSSLQHLDFTFNTLS--------------------------GEIPANICSNLPFLEILSLQENMFHGAIP-SNLSNCTYL 176 (372)
Q Consensus 124 l~~L~~L~l~~~~~~--------------------------~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L 176 (372)
+++|++|+++..... ..++. .+..+++|++|++++|.+.+... ..+..+++|
T Consensus 242 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~-~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L 320 (592)
T 3ogk_B 242 AANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPI-LFPFAAQIRKLDLLYALLETEDHCTLIQKCPNL 320 (592)
T ss_dssp CTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGG-GGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTC
T ss_pred hhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHH-HHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCC
Confidence 566666666532111 12222 23356667777777666543211 224566777
Q ss_pred cEEEeecccCccccCcchhCCCCCCeeeccC-----------Cccccc-cCccccCCCCCCEEEccCCcccccCcccccC
Q 035512 177 RILSLAYNDFSGAIPREIGNLTKLKGLYLGA-----------NRLQGE-IPREFGNLAVLELMSLAGNNLQEKIPPEIGN 244 (372)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-----------~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 244 (372)
++|+++++......+..+..+++|++|++++ +.++.. .......+++|++|++..+.++...+..+..
T Consensus 321 ~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~ 400 (592)
T 3ogk_B 321 EVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGT 400 (592)
T ss_dssp CEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHH
T ss_pred CEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHh
Confidence 7777763322222233345566777777773 233322 1222345677777777666665544444443
Q ss_pred -CCCCCEEEcc----CCccccc-----cCccccCcCCCCEEeccCCc--cccccCCCCCcCcCccccccccccCCCcccc
Q 035512 245 -LRNLEELNLG----DNKLVGT-----IPTAIFNVSKLKALKLYSNS--LLGSLSSIPDFRLPNLEVLLLWDLENNSFSG 312 (372)
Q Consensus 245 -~~~L~~L~l~----~~~~~~~-----~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 312 (372)
+++|++|+++ .+.+++. .+..+.++++|++|++++|. +.+... ......+++|+.|++++|++++
T Consensus 401 ~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~---~~~~~~~~~L~~L~L~~n~l~~ 477 (592)
T 3ogk_B 401 YLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGL---SYIGQYSPNVRWMLLGYVGESD 477 (592)
T ss_dssp HCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHH---HHHHHSCTTCCEEEECSCCSSH
T ss_pred hCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHH---HHHHHhCccceEeeccCCCCCH
Confidence 6777777775 3445432 22235567788888886543 211110 0001135567777999998875
Q ss_pred C-CCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCccccc
Q 035512 313 F-IPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGI 366 (372)
Q Consensus 313 ~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~ 366 (372)
. ++..+..+++|++|++++|.++..... .....+++|++|++++|+++..
T Consensus 478 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~----~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 478 EGLMEFSRGCPNLQKLEMRGCCFSERAIA----AAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHHTCCTTCCEEEEESCCCBHHHHH----HHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHHHhcCcccCeeeccCCCCcHHHHH----HHHHhcCccCeeECcCCcCCHH
Confidence 3 344557789999999999986543221 0235678999999999998753
No 92
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=5.5e-20 Score=164.99 Aligned_cols=200 Identities=19% Similarity=0.148 Sum_probs=120.9
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCC-ccccCCCCCCE-EEccC
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALP-SFIFNKSSLQH-LDFTF 134 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-~~l~~l~~L~~-L~l~~ 134 (372)
+++.++++++ .+|..+ .+++++|+|++|+++...+.+|.++++|++|++++|.+.+..+ ..|.+++++++ +.+++
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 4556677776 556544 3578888888888884444567888888888888887754333 45667777665 44455
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeec-ccCccccCcchhCCC-CCCeeeccCCcccc
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAY-NDFSGAIPREIGNLT-KLKGLYLGANRLQG 212 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~~~~~~-~L~~L~l~~~~~~~ 212 (372)
|++. .++...+..+++|++|++++|.+....+..+.....+..+++.+ +.+.......+..+. .++.|++++|.++.
T Consensus 90 N~l~-~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 90 NNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp TTCC-EECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred Cccc-ccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6666 66666666777777777777777655555555555666666654 334433333444433 45666666666653
Q ss_pred ccCccccCCCCCCEEEccC-CcccccCcccccCCCCCCEEEccCCccccc
Q 035512 213 EIPREFGNLAVLELMSLAG-NNLQEKIPPEIGNLRNLEELNLGDNKLVGT 261 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 261 (372)
..+..+ ...+|+.+.+.+ |.+....+..|..+++|++|++++|+++..
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~l 217 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL 217 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCC
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCcc
Confidence 333322 334556666653 334433334455666666666666666533
No 93
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.84 E-value=5.7e-23 Score=197.64 Aligned_cols=302 Identities=12% Similarity=0.038 Sum_probs=180.0
Q ss_pred cEEEEEeCCCC-ccc-cccccccCCCCCCEEECCCCcCCCC----CChhhhCCCCCCEEEcccccccC----CCCccccC
Q 035512 54 RVTVLNISGLN-LTG-TIPSQLGNLSSLQSLNLSFNRLSGS----IPSAIFTTYTLKYVNLRQNQLSG----ALPSFIFN 123 (372)
Q Consensus 54 ~l~~l~l~~~~-l~~-~~~~~~~~l~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~~~~----~~~~~l~~ 123 (372)
++++|++++|. ++. .++.....+++|++|++++|.+.+. ++.....+++|++|++++|.+++ ..+..+..
T Consensus 139 ~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~ 218 (592)
T 3ogk_B 139 DLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARN 218 (592)
T ss_dssp GCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHH
T ss_pred cCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhh
Confidence 59999999986 221 2233345889999999999998755 33345678999999999998863 23344567
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccC---cc-----------------------CCccCcCCCCCc
Q 035512 124 KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFH---GA-----------------------IPSNLSNCTYLR 177 (372)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~---~~-----------------------~~~~l~~l~~L~ 177 (372)
+++|++|++++|.+. .++. .+..+++|+.|+++..... .. .+..+..+++|+
T Consensus 219 ~~~L~~L~L~~~~~~-~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~ 296 (592)
T 3ogk_B 219 CRSLVSVKVGDFEIL-ELVG-FFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIR 296 (592)
T ss_dssp CTTCCEEECSSCBGG-GGHH-HHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCC
T ss_pred CCCCcEEeccCccHH-HHHH-HHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCc
Confidence 899999999999887 4554 3447888999888743211 11 222233344555
Q ss_pred EEEeecccCccccC-cchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccC-----------CcccccC-cccccC
Q 035512 178 ILSLAYNDFSGAIP-REIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAG-----------NNLQEKI-PPEIGN 244 (372)
Q Consensus 178 ~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~-~~~l~~ 244 (372)
+|++++|.+..... ..+..+++|+.|+++++.....++.....+++|++|++++ +.++... ......
T Consensus 297 ~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 297 KLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 55555554332211 2234555555555552222122222334556666666662 2332211 122334
Q ss_pred CCCCCEEEccCCccccccCccccC-cCCCCEEeccC----CccccccCCCCCc-----CcCccccccccccCCCc--ccc
Q 035512 245 LRNLEELNLGDNKLVGTIPTAIFN-VSKLKALKLYS----NSLLGSLSSIPDF-----RLPNLEVLLLWDLENNS--FSG 312 (372)
Q Consensus 245 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~l~~----~~~~~~~~~~~~~-----~~~~l~~L~~l~l~~~~--~~~ 312 (372)
+++|++|+++.+.+++..+..+.. +++|++|++++ +.+. ..+.. .+..+++|+.|++++|. +++
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~----~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~ 452 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERIT----DLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTD 452 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCS----SCCCHHHHHHHHHHCTTCCEEEEECCGGGCCH
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCcccc----CchHHHHHHHHHHhCCCCCEEEEecCCCCccH
Confidence 667777777666665544444443 67777777753 2331 11100 13346667777886543 443
Q ss_pred CCCccc-cCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 313 FIPNTL-GNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 313 ~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
.....+ ..+++|++|++++|.+++.... ..+..+++|+.|++++|++++
T Consensus 453 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~~~~~L~~L~l~~n~l~~ 502 (592)
T 3ogk_B 453 LGLSYIGQYSPNVRWMLLGYVGESDEGLM----EFSRGCPNLQKLEMRGCCFSE 502 (592)
T ss_dssp HHHHHHHHSCTTCCEEEECSCCSSHHHHH----HHHTCCTTCCEEEEESCCCBH
T ss_pred HHHHHHHHhCccceEeeccCCCCCHHHHH----HHHhcCcccCeeeccCCCCcH
Confidence 333233 3478899999999987643211 124678999999999999764
No 94
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.83 E-value=8.4e-23 Score=196.53 Aligned_cols=109 Identities=17% Similarity=0.201 Sum_probs=74.5
Q ss_pred CCcEEEEEeCCCCcccccccccc-CCCCCCEEECCCC-cCCCC-CChhhhCCCCCCEEEcccccccCCCCccc----cCC
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLG-NLSSLQSLNLSFN-RLSGS-IPSAIFTTYTLKYVNLRQNQLSGALPSFI----FNK 124 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~-~l~~L~~L~l~~~-~~~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~l----~~l 124 (372)
.+++++|+++++.+++..+..+. .+++|++|++++| .+++. ++..+..+++|++|++++|.+++..+..+ ..+
T Consensus 104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~ 183 (594)
T 2p1m_B 104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183 (594)
T ss_dssp CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence 45788999999888766666665 6889999999888 45432 33344578899999999888765443333 356
Q ss_pred CCCCEEEccCCc--cccccChhhhcCCCCccEEEccCC
Q 035512 125 SSLQHLDFTFNT--LSGEIPANICSNLPFLEILSLQEN 160 (372)
Q Consensus 125 ~~L~~L~l~~~~--~~~~~~~~~~~~l~~L~~L~l~~~ 160 (372)
++|++|++++|. +.......+...+++|+.|++++|
T Consensus 184 ~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~ 221 (594)
T 2p1m_B 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA 221 (594)
T ss_dssp CCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred CcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence 788888888876 222222233335678888888776
No 95
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=4.3e-19 Score=159.21 Aligned_cols=241 Identities=20% Similarity=0.172 Sum_probs=188.3
Q ss_pred CEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccE-EEcc
Q 035512 80 QSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEI-LSLQ 158 (372)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~-L~l~ 158 (372)
++++.++++++ .+|..+ .+++++|++++|.++...+..|.++++|++|++++|.+.+.++...|.++++++. +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 57788888888 677655 3579999999999996666789999999999999999876788888888988776 5556
Q ss_pred CCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccC-CccccccCccccCC-CCCCEEEccCCcccc
Q 035512 159 ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGA-NRLQGEIPREFGNL-AVLELMSLAGNNLQE 236 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~ 236 (372)
.|.+....+..+..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.+..
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 6888877788899999999999999998866555566667788888866 45655555566655 468899999999987
Q ss_pred cCcccccCCCCCCEEEccC-CccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCC
Q 035512 237 KIPPEIGNLRNLEELNLGD-NKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIP 315 (372)
Q Consensus 237 ~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 315 (372)
+.+..+ ...+|+++++.+ |.+....+.+|.++++|++|++++|++ ..++...+.++++|+.+++.+ +. .+|
T Consensus 169 i~~~~f-~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l----~~lp~~~~~~L~~L~~l~~~~--l~-~lP 240 (350)
T 4ay9_X 169 IHNSAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRI----HSLPSYGLENLKKLRARSTYN--LK-KLP 240 (350)
T ss_dssp ECTTSS-TTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCC----CCCCSSSCTTCCEEECTTCTT--CC-CCC
T ss_pred CChhhc-cccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCc----CccChhhhccchHhhhccCCC--cC-cCC
Confidence 555544 446899999975 566655556789999999999999998 677877788888886555433 33 445
Q ss_pred ccccCCCCCCEEecCCC
Q 035512 316 NTLGNLRNLERLNLGDN 332 (372)
Q Consensus 316 ~~~~~~~~L~~L~l~~n 332 (372)
.+..+++|+.+++.++
T Consensus 241 -~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 241 -TLEKLVALMEASLTYP 256 (350)
T ss_dssp -CTTTCCSCCEEECSCH
T ss_pred -CchhCcChhhCcCCCC
Confidence 3778999999999874
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.82 E-value=1.3e-19 Score=150.23 Aligned_cols=159 Identities=20% Similarity=0.194 Sum_probs=80.8
Q ss_pred CCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEc
Q 035512 78 SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSL 157 (372)
Q Consensus 78 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l 157 (372)
+|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.+. .++...+..+++|++|++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEEc
Confidence 5555555555555333334455555555555555555443344455555555555555554 444444445555555555
Q ss_pred cCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCccccc
Q 035512 158 QENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEK 237 (372)
Q Consensus 158 ~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 237 (372)
++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+. ..++.|+.|++..|.+...
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~-------~~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWD-------CTCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC-------CCTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCee-------cCCCCHHHHHHHHHhCCce
Confidence 555555444444455555555555555555443334455555555555555432 2234455555555555544
Q ss_pred CcccccC
Q 035512 238 IPPEIGN 244 (372)
Q Consensus 238 ~~~~l~~ 244 (372)
+|..++.
T Consensus 181 ip~~~~~ 187 (208)
T 2o6s_A 181 VRNSAGS 187 (208)
T ss_dssp BBCTTSS
T ss_pred eeccCcc
Confidence 5544443
No 97
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.81 E-value=2.5e-19 Score=148.58 Aligned_cols=174 Identities=25% Similarity=0.286 Sum_probs=102.2
Q ss_pred cEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCC
Q 035512 153 EILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGN 232 (372)
Q Consensus 153 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 232 (372)
+.++..++.+... |..+ .+++++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 10 ~~v~c~~~~l~~~-p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n 86 (208)
T 2o6s_A 10 TTVECYSQGRTSV-PTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN 86 (208)
T ss_dssp TEEECCSSCCSSC-CSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCccCC-CCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCC
Confidence 4455555555422 2222 346777777777666555555666677777777777666554555566666666666666
Q ss_pred cccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCcccc
Q 035512 233 NLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSG 312 (372)
Q Consensus 233 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~ 312 (372)
.+....+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+ ..++...+..+++|+.|++++|.+.
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L~l~~N~~~- 161 (208)
T 2o6s_A 87 QLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQL----KSVPDGVFDRLTSLQYIWLHDNPWD- 161 (208)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC----SCCCTTTTTTCTTCCEEECCSCCBC-
T ss_pred cCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCcc----ceeCHHHhccCCCccEEEecCCCee-
Confidence 66655555556666666666666666655555556666666666666665 3334334445555555566666443
Q ss_pred CCCccccCCCCCCEEecCCCccccCCCC
Q 035512 313 FIPNTLGNLRNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 313 ~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 340 (372)
..+++|+.|+++.|.+.+..|.
T Consensus 162 ------~~~~~l~~L~~~~n~~~g~ip~ 183 (208)
T 2o6s_A 162 ------CTCPGIRYLSEWINKHSGVVRN 183 (208)
T ss_dssp ------CCTTTTHHHHHHHHHCTTTBBC
T ss_pred ------cCCCCHHHHHHHHHhCCceeec
Confidence 2345566666666666555554
No 98
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.79 E-value=1.3e-21 Score=188.30 Aligned_cols=302 Identities=15% Similarity=0.153 Sum_probs=156.2
Q ss_pred CCcEEEEEeCCC-Ccccc-ccccccCCCCCCEEECCCCcCCCCCChhhh----CCCCCCEEEccccc--ccCC-CCcccc
Q 035512 52 RHRVTVLNISGL-NLTGT-IPSQLGNLSSLQSLNLSFNRLSGSIPSAIF----TTYTLKYVNLRQNQ--LSGA-LPSFIF 122 (372)
Q Consensus 52 ~~~l~~l~l~~~-~l~~~-~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~----~l~~L~~L~l~~~~--~~~~-~~~~l~ 122 (372)
.+++++|++++| .++.. ++..+..+++|++|++++|.+++..+..+. .+++|++|++++|. +... ....+.
T Consensus 129 ~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~ 208 (594)
T 2p1m_B 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVT 208 (594)
T ss_dssp CTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHH
T ss_pred CCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHH
Confidence 468899999888 55432 344455788999999998887655443333 56788888888875 2111 111123
Q ss_pred CCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCc--------------------------cC----ccCCccCcC
Q 035512 123 NKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENM--------------------------FH----GAIPSNLSN 172 (372)
Q Consensus 123 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~--------------------------~~----~~~~~~l~~ 172 (372)
.+++|++|++++|...+.++. .+..+++|+.|++..+. +. ..++..+..
T Consensus 209 ~~~~L~~L~L~~~~~~~~l~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~ 287 (594)
T 2p1m_B 209 RCPNLKSLKLNRAVPLEKLAT-LLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSV 287 (594)
T ss_dssp HCTTCCEEECCTTSCHHHHHH-HHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHH
T ss_pred hCCCCcEEecCCCCcHHHHHH-HHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHh
Confidence 467888888887732212222 22245555555433221 00 011111123
Q ss_pred CCCCcEEEeecccCcccc-CcchhCCCCCCeeeccCCcccc-ccCccccCCCCCCEEEc---------------------
Q 035512 173 CTYLRILSLAYNDFSGAI-PREIGNLTKLKGLYLGANRLQG-EIPREFGNLAVLELMSL--------------------- 229 (372)
Q Consensus 173 l~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l--------------------- 229 (372)
+++|++|++++|.+.... ...+..+++|+.|++++| +.. .++.....+++|++|++
T Consensus 288 ~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~ 366 (594)
T 2p1m_B 288 CSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVS 366 (594)
T ss_dssp HTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHH
T ss_pred hCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHH
Confidence 456666666665543221 122345555666655555 211 11111223445555544
Q ss_pred -------------cCCcccccCccccc-CCCCCCEEEcc--C----Cccccc-----cCccccCcCCCCEEeccCCcccc
Q 035512 230 -------------AGNNLQEKIPPEIG-NLRNLEELNLG--D----NKLVGT-----IPTAIFNVSKLKALKLYSNSLLG 284 (372)
Q Consensus 230 -------------~~~~~~~~~~~~l~-~~~~L~~L~l~--~----~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~ 284 (372)
..+.++......+. .+++|++|+++ + +.+++. .+..+..+++|+.|++++ .+.+
T Consensus 367 l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~ 445 (594)
T 2p1m_B 367 VSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTD 445 (594)
T ss_dssp HHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCH
T ss_pred HHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccH
Confidence 33333322222222 34555555555 2 222210 111134455566666644 2211
Q ss_pred ccCCCCCcCcC-ccccccccccCCCccccCCCccc-cCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCc
Q 035512 285 SLSSIPDFRLP-NLEVLLLWDLENNSFSGFIPNTL-GNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 285 ~~~~~~~~~~~-~l~~L~~l~l~~~~~~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 362 (372)
.. ...+. .+++|+.|++++|.+++.....+ ..+++|++|++++|.++..... .....+++|+.|++++|+
T Consensus 446 ~~----~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~----~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 446 KV----FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALL----ANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HH----HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHH----HTGGGGGGSSEEEEESSC
T ss_pred HH----HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHH----HHHHhCCCCCEEeeeCCC
Confidence 10 00011 24566777888888765433333 5688899999999887433221 123457899999999998
Q ss_pred cc
Q 035512 363 LD 364 (372)
Q Consensus 363 l~ 364 (372)
++
T Consensus 518 ~~ 519 (594)
T 2p1m_B 518 VS 519 (594)
T ss_dssp CB
T ss_pred CC
Confidence 74
No 99
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.79 E-value=5e-19 Score=167.17 Aligned_cols=206 Identities=26% Similarity=0.380 Sum_probs=150.7
Q ss_pred CCCCCCCCC-----cccce-eecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEE
Q 035512 33 NWNTNISFC-----NWTGV-ACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYV 106 (372)
Q Consensus 33 ~~~~~~~~~-----~~~~~-~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L 106 (372)
+|......| .|.++ .|. ..+++.|++++|.+++ +|..+ +++|++|++++|.++ .+| ..+++|++|
T Consensus 35 ~W~~~~~~~~~~~~~~~~l~~C~--~~~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 35 KWEKQALPGENRNEAVSLLKECL--INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYL 105 (571)
T ss_dssp HHHTTCCTTCCHHHHHHHHHHHH--HTTCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEE
T ss_pred HHhccCCccccccchhhhccccc--cCCccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEE
Confidence 676666677 68887 564 3479999999999986 66544 378999999999998 566 457899999
Q ss_pred EcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccC
Q 035512 107 NLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDF 186 (372)
Q Consensus 107 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 186 (372)
++++|.+++ +|. +.. +|++|++++|.+. .+|. .+++|+.|++++|.+.+ ++. .+++|++|++++|.+
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L 172 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLT-MLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQL 172 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-CCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCC
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCC-CCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCC
Confidence 999999986 555 554 8999999999988 4666 57889999999998875 343 567888888888888
Q ss_pred ccccCcchhCCCCCCeeeccCCccccccCccccCCCCC-------CEEEccCCcccccCcccccCCCCCCEEEccCCccc
Q 035512 187 SGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVL-------ELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLV 259 (372)
Q Consensus 187 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 259 (372)
++ ++. +. ++|+.|++++|.+. .+|. +.. +| +.|++++|.+.. +|..+..+++|++|++++|+++
T Consensus 173 ~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~ 243 (571)
T 3cvr_A 173 TF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLS 243 (571)
T ss_dssp SC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCC
T ss_pred CC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCC
Confidence 75 444 44 78888888888876 4444 333 55 777777777764 4555555777777777777776
Q ss_pred cccCccccCc
Q 035512 260 GTIPTAIFNV 269 (372)
Q Consensus 260 ~~~~~~~~~~ 269 (372)
+..|..+..+
T Consensus 244 ~~~p~~l~~l 253 (571)
T 3cvr_A 244 SRIRESLSQQ 253 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CcCHHHHHHh
Confidence 6655555443
No 100
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.78 E-value=6.1e-18 Score=141.29 Aligned_cols=134 Identities=22% Similarity=0.299 Sum_probs=69.3
Q ss_pred CCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEec
Q 035512 198 TKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKL 277 (372)
Q Consensus 198 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 277 (372)
++++.|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.++...+..|.++++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 34555555555555444445555555555555555555544555555555555555555555443444455555555555
Q ss_pred cCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccc
Q 035512 278 YSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 335 (372)
++|.+ ..++...|..+++|+.|++++|.+++..+..+..+++|+.|++++|++.
T Consensus 112 ~~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 112 NANKI----NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CSSCC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCCCC----CEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 55554 3333334444445555555555555444444555555555555555443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=3.3e-18 Score=149.20 Aligned_cols=170 Identities=23% Similarity=0.314 Sum_probs=78.9
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+ +..+++|++|++++|.+. .++. +..+++|+
T Consensus 43 ~~l~~L~~L~l~~~~i~~-~-~~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~-~~~~--l~~l~~L~ 115 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKS-V-QGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVK-DLSS--LKDLKKLK 115 (291)
T ss_dssp HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC-CGGG--GTTCTTCC
T ss_pred hhcCcccEEEccCCCccc-C-hhHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCC-CChh--hccCCCCC
Confidence 344555566666555542 2 235555555566655555553322 555555555555555554 2222 23455555
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCc
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (372)
.|++++|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.
T Consensus 116 ~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~ 189 (291)
T 1h6t_A 116 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 189 (291)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCc
Confidence 555555554432 2344445555555555544422 234444444444444444433221 3444444444444444
Q ss_pred ccccCcccccCCCCCCEEEccCCcc
Q 035512 234 LQEKIPPEIGNLRNLEELNLGDNKL 258 (372)
Q Consensus 234 ~~~~~~~~l~~~~~L~~L~l~~~~~ 258 (372)
+... + .+..+++|+.|++++|++
T Consensus 190 i~~l-~-~l~~l~~L~~L~l~~n~i 212 (291)
T 1h6t_A 190 ISDL-R-ALAGLKNLDVLELFSQEC 212 (291)
T ss_dssp CCBC-G-GGTTCTTCSEEEEEEEEE
T ss_pred CCCC-h-hhccCCCCCEEECcCCcc
Confidence 4321 1 234444444444444443
No 102
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.76 E-value=1.2e-17 Score=140.42 Aligned_cols=162 Identities=23% Similarity=0.269 Sum_probs=120.8
Q ss_pred CCCCCCCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc
Q 035512 33 NWNTNISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ 112 (372)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 112 (372)
.|......|.|+++.|. ++.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.
T Consensus 11 ~~~~~~~~Cs~~~v~c~------------~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 11 AACPSQCSCSGTTVDCR------------SKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp CCCCTTCEEETTEEECT------------TSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred ccCCCCCEEeCCEeEcc------------CCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCC
Confidence 56677788888887774 33343 3443332 678888888888886667777888888888888888
Q ss_pred ccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCc
Q 035512 113 LSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPR 192 (372)
Q Consensus 113 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 192 (372)
+....+..|..+++|++|++++|.+. .++...+..+++|+.|++++|.+. .++..+..+++|++|++++|.+....+.
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~ 153 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHG 153 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHH
Confidence 87555566777888888888888887 666666667888888888888877 5566677888888888888888765556
Q ss_pred chhCCCCCCeeeccCCccc
Q 035512 193 EIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 193 ~~~~~~~L~~L~l~~~~~~ 211 (372)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 6778888888888888765
No 103
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.76 E-value=9.8e-18 Score=140.03 Aligned_cols=151 Identities=23% Similarity=0.311 Sum_probs=120.9
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCc
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNT 136 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (372)
.++++++.++ .+|..+. +++++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 5667777776 4555443 689999999999986666688889999999999999987778888899999999999998
Q ss_pred cccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccc
Q 035512 137 LSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 211 (372)
+. .++...+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 92 l~-~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 IT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CC-ccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 88 778777778888888888888888777777888888888888888877666566777777777777777654
No 104
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.75 E-value=1.4e-17 Score=145.32 Aligned_cols=188 Identities=24% Similarity=0.335 Sum_probs=150.4
Q ss_pred CCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEcc
Q 035512 79 LQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQ 158 (372)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (372)
+..+.+..+.+.+. ..+..+++|++|++++|.+... ..+..+++|++|++++|.+. .++. +..+++|+.|+++
T Consensus 26 ~~~~~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~--~~~~~l~~L~~L~L~~n~l~-~~~~--l~~l~~L~~L~l~ 98 (291)
T 1h6t_A 26 TIKDNLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLT-DIKP--LANLKNLGWLFLD 98 (291)
T ss_dssp HHHHHTTCSCTTSE--ECHHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCC-CCGG--GTTCTTCCEEECC
T ss_pred HHHHHhcCCCcccc--cchhhcCcccEEEccCCCcccC--hhHhcCCCCCEEEccCCccC-CCcc--cccCCCCCEEECC
Confidence 33445555555432 2345788999999999988744 34788999999999999998 4544 5589999999999
Q ss_pred CCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccC
Q 035512 159 ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKI 238 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 238 (372)
+|.+.+. ..+..+++|++|++++|.+... ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+....
T Consensus 99 ~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 99 ENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp SSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccch
Confidence 9998753 3488899999999999988753 4678889999999999988754 56888999999999999887654
Q ss_pred cccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccc
Q 035512 239 PPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLL 283 (372)
Q Consensus 239 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 283 (372)
+ +..+++|++|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred h--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 4 88889999999999988753 3 4888999999999999874
No 105
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=1.5e-17 Score=158.75 Aligned_cols=166 Identities=27% Similarity=0.383 Sum_probs=70.9
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEcc
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFT 133 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 133 (372)
+++.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+. ..+..+++|++|+++
T Consensus 44 ~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls 117 (605)
T 1m9s_A 44 SIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDL--SSLKDLKKLKSLSLE 117 (605)
T ss_dssp TCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCC--TTSTTCTTCCEEECT
T ss_pred CCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCC--hhhccCCCCCEEEec
Confidence 44455555555442 22 24445555555555555442211 44455555555555544421 234444555555555
Q ss_pred CCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccc
Q 035512 134 FNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGE 213 (372)
Q Consensus 134 ~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 213 (372)
+|.+. .++. +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.
T Consensus 118 ~N~l~-~l~~--l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 118 HNGIS-DING--LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp TSCCC-CCGG--GGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCCC-CCcc--ccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCCCCC
Confidence 54444 2211 22344444444444444332 233444444444444444432222 33444444444444444321
Q ss_pred cCccccCCCCCCEEEccCCcc
Q 035512 214 IPREFGNLAVLELMSLAGNNL 234 (372)
Q Consensus 214 ~~~~l~~~~~L~~L~l~~~~~ 234 (372)
..+..+++|+.|++++|.+
T Consensus 191 --~~l~~l~~L~~L~L~~N~l 209 (605)
T 1m9s_A 191 --RALAGLKNLDVLELFSQEC 209 (605)
T ss_dssp --GGGTTCTTCSEEECCSEEE
T ss_pred --hHHccCCCCCEEEccCCcC
Confidence 1233344444444444433
No 106
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.75 E-value=1.6e-17 Score=156.99 Aligned_cols=182 Identities=27% Similarity=0.410 Sum_probs=133.8
Q ss_pred CCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeec
Q 035512 126 SLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYL 205 (372)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (372)
+++.|++++|.+. .+|..+ .++|+.|++++|.+. .+| ..+++|++|++++|.+++ ++. +.. +|+.|++
T Consensus 60 ~L~~L~Ls~n~L~-~lp~~l---~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLS-SLPDNL---PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCS-CCCSCC---CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCC-ccCHhH---cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 8899999998887 477654 367999999998887 344 457888999999888875 444 443 8889999
Q ss_pred cCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccc
Q 035512 206 GANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGS 285 (372)
Q Consensus 206 ~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 285 (372)
++|.+.+ +|. .+++|+.|++++|.+.. +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.+
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L--- 192 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLL--- 192 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCC---
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCC---
Confidence 8888875 444 57888888888888875 443 46788888888888875 455 54 8888888888887
Q ss_pred cCCCCCcCcCccccc-------cccccCCCccccCCCccccCCCCCCEEecCCCccccCCCC
Q 035512 286 LSSIPDFRLPNLEVL-------LLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPE 340 (372)
Q Consensus 286 ~~~~~~~~~~~l~~L-------~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~ 340 (372)
..++. ++. +| +.|++++|.++. +|..+..+++|+.|+|++|++++..+.
T Consensus 193 -~~lp~--~~~--~L~~~~~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 193 -ESLPA--VPV--RNHHSEETEIFFRCRENRITH-IPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp -SSCCC--CC----------CCEEEECCSSCCCC-CCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred -Cchhh--HHH--hhhcccccceEEecCCCccee-cCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 34444 222 44 666888888874 566666688888888888888766554
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.75 E-value=2.4e-17 Score=137.65 Aligned_cols=154 Identities=20% Similarity=0.256 Sum_probs=103.2
Q ss_pred cEEEeecccCccccCcchhCCCCCCeeeccCCccccccC-ccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccC
Q 035512 177 RILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIP-REFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGD 255 (372)
Q Consensus 177 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 255 (372)
+.++++++.++. +|..+ ...++.|++++|.+.+..+ ..+..+++|+.|++++|.+....+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 467777777663 33322 2345777777777765533 3466777777777777777766666677777777777777
Q ss_pred CccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccc
Q 035512 256 NKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 256 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 335 (372)
|.+++..+..|.++++|++|++++|.+ ..+....|..+.+|+.|++++|++++..+..+..+++|+.|++++|++.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 166 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRI----TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCC----CCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEE
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcC----CeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCc
Confidence 777766666677777777777777776 3344445556666666677777777666666777777777777777665
Q ss_pred cC
Q 035512 336 SS 337 (372)
Q Consensus 336 ~~ 337 (372)
..
T Consensus 167 c~ 168 (220)
T 2v70_A 167 CN 168 (220)
T ss_dssp CS
T ss_pred CC
Confidence 44
No 108
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.74 E-value=9.8e-19 Score=155.51 Aligned_cols=222 Identities=15% Similarity=0.101 Sum_probs=133.1
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeeccc----CccccCcchhCCCC
Q 035512 124 KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYND----FSGAIPREIGNLTK 199 (372)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~----~~~~~~~~~~~~~~ 199 (372)
+++|+++++.. .+. .++...|.+|++|+.+++.++.+....+..+..+..+..+...... ........|..+..
T Consensus 100 ~~~L~~l~L~~-~i~-~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~ 177 (329)
T 3sb4_A 100 KQTLEKVILSE-KIK-NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEP 177 (329)
T ss_dssp CTTCCC-CBCT-TCC-EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCC
T ss_pred cCCCcEEECCc-ccc-chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccc
Confidence 66666666666 554 5666666666666666666666555555555555555544443311 11111222334444
Q ss_pred CC-eeeccCCcc-ccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEec
Q 035512 200 LK-GLYLGANRL-QGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKL 277 (372)
Q Consensus 200 L~-~L~l~~~~~-~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 277 (372)
++ .+.+..... .......-....++..+.+.+.-...........+++|+++++++|.++.+...+|.++++|+++++
T Consensus 178 L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l 257 (329)
T 3sb4_A 178 LETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKL 257 (329)
T ss_dssp CEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEEC
T ss_pred cceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEEC
Confidence 44 222222110 0000000012334455555443211111111123788889999888888777788888889999988
Q ss_pred cCCccccccCCCCCcCcCcccccc-ccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEE
Q 035512 278 YSNSLLGSLSSIPDFRLPNLEVLL-LWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHI 356 (372)
Q Consensus 278 ~~~~~~~~~~~~~~~~~~~l~~L~-~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L 356 (372)
.++ + ..++...|.++..|+ .+++.+ .++...+.+|.+|++|+.|++++|.+...... .|.++++|+.+
T Consensus 258 ~~n-i----~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~-----aF~~~~~L~~l 326 (329)
T 3sb4_A 258 PHN-L----KTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDE-----LFGNGVPSKLI 326 (329)
T ss_dssp CTT-C----CEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTT-----TTCTTCCCCEE
T ss_pred Ccc-c----ceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchh-----hhcCCcchhhh
Confidence 887 4 556777788888888 888877 66666677888999999999988888777765 68888888888
Q ss_pred eC
Q 035512 357 VL 358 (372)
Q Consensus 357 ~l 358 (372)
+.
T Consensus 327 y~ 328 (329)
T 3sb4_A 327 YK 328 (329)
T ss_dssp EC
T ss_pred cc
Confidence 64
No 109
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.73 E-value=4.2e-17 Score=155.63 Aligned_cols=185 Identities=22% Similarity=0.305 Sum_probs=106.4
Q ss_pred EEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCcc
Q 035512 58 LNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTL 137 (372)
Q Consensus 58 l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~ 137 (372)
+.+..+.+.+..+ +..+++|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+
T Consensus 26 l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l 99 (605)
T 1m9s_A 26 DNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKI 99 (605)
T ss_dssp HHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCC
T ss_pred HhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCC
Confidence 3444444443322 4566677777777777662 33 46667777777777777664333 66677777777777766
Q ss_pred ccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCcc
Q 035512 138 SGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPRE 217 (372)
Q Consensus 138 ~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 217 (372)
. .++ . +..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.+..+
T Consensus 100 ~-~l~-~-l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~-- 170 (605)
T 1m9s_A 100 K-DLS-S-LKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP-- 170 (605)
T ss_dssp C-CCT-T-STTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--
T ss_pred C-CCh-h-hccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--
Confidence 5 333 2 33566666666666666532 3355566666666666665533 345555666666666665554333
Q ss_pred ccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccc
Q 035512 218 FGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLV 259 (372)
Q Consensus 218 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 259 (372)
+..+++|+.|++++|.+... ..+..+++|+.|++++|.+.
T Consensus 171 l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEE
T ss_pred hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCc
Confidence 55555566666655555432 23555555555555555554
No 110
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.73 E-value=8.1e-17 Score=135.37 Aligned_cols=153 Identities=24% Similarity=0.307 Sum_probs=118.1
Q ss_pred CCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEcc
Q 035512 79 LQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQ 158 (372)
Q Consensus 79 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (372)
-+.++.+++.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~-~i~~~~~~~l~~L~~L~Ls 96 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLG 96 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECC
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCC-CcChhhcccCCCcCEEECC
Confidence 456777777776 5555433 67888888888888777777888888888888888886 6776666678888888888
Q ss_pred CCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccc
Q 035512 159 ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQE 236 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 236 (372)
+|.+.+..+..+..+++|++|++++|.+. .++..+..+++|+.|++++|.+.+..+..+..+++|+.|++.+|.+..
T Consensus 97 ~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 97 TNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDC 173 (229)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCT
T ss_pred CCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccC
Confidence 88887666666778888888888888877 556667788888888888888876666677788888888888887653
No 111
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.73 E-value=3.2e-17 Score=147.61 Aligned_cols=176 Identities=23% Similarity=0.264 Sum_probs=118.6
Q ss_pred CEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCcccc-CCCCCCEEEccCCccccccChhhhcCCCCccEEEcc
Q 035512 80 QSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIF-NKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQ 158 (372)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~ 158 (372)
+.++++++.++ .+|..+. ..++.|++++|.++...+..+. .+++|++|++++|.+. .++...+..+++|+.|+++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECC
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCC-ccChhhccCCCCCCEEECC
Confidence 57888888777 4565443 3578888888888766666666 7788888888888877 5555555577778888888
Q ss_pred CCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccc---cCCCCCCEEEccCCccc
Q 035512 159 ENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREF---GNLAVLELMSLAGNNLQ 235 (372)
Q Consensus 159 ~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~ 235 (372)
+|.+....+..+..+++|++|++++|.+....+..+..+++|+.|++++|.+....+..+ ..+++|+.|++++|.+.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 777776666667777777777777777776666667777777777777777664433333 34666667777766666
Q ss_pred ccCcccccCCCC--CCEEEccCCccc
Q 035512 236 EKIPPEIGNLRN--LEELNLGDNKLV 259 (372)
Q Consensus 236 ~~~~~~l~~~~~--L~~L~l~~~~~~ 259 (372)
...+..+..++. ++.|++++|++.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 544445555554 356666666654
No 112
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.72 E-value=3.9e-17 Score=147.03 Aligned_cols=176 Identities=26% Similarity=0.226 Sum_probs=148.8
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhh-CCCCCCEEEcccccccCCCCccccCCCCCCEEEccC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIF-TTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF 134 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (372)
+.++++++.++ .+|..+. +.++.|+|++|.+++..+..+. .+++|++|++++|.++...+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 46888899887 4565443 4699999999999976677777 899999999999999987778899999999999999
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcch---hCCCCCCeeeccCCccc
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREI---GNLTKLKGLYLGANRLQ 211 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~ 211 (372)
|.+. .++...+..+++|+.|++++|.+....+..+..+++|++|++++|.+.......+ ..+++|+.|++++|.+.
T Consensus 98 N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 98 NHLH-TLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SCCC-EECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CcCC-cCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 9998 7777777789999999999999998888899999999999999999986554445 57899999999999998
Q ss_pred cccCccccCCCC--CCEEEccCCccc
Q 035512 212 GEIPREFGNLAV--LELMSLAGNNLQ 235 (372)
Q Consensus 212 ~~~~~~l~~~~~--L~~L~l~~~~~~ 235 (372)
...+..+..++. ++.|++.+|.+.
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred ccCHHHhhhccHhhcceEEecCCCcc
Confidence 665566777776 488999999875
No 113
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.72 E-value=1.1e-16 Score=133.60 Aligned_cols=111 Identities=23% Similarity=0.302 Sum_probs=45.2
Q ss_pred CCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEE
Q 035512 148 NLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELM 227 (372)
Q Consensus 148 ~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 227 (372)
.+++|+.|++++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|+.|
T Consensus 55 ~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 134 (220)
T 2v70_A 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLL 134 (220)
T ss_dssp GCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEE
T ss_pred cCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEE
Confidence 34444444444444433333334444444444444444443333333444444444444444433333333333444444
Q ss_pred EccCCcccccCcccccCCCCCCEEEccCCcc
Q 035512 228 SLAGNNLQEKIPPEIGNLRNLEELNLGDNKL 258 (372)
Q Consensus 228 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 258 (372)
++++|.+....+..+..+++|++|++++|++
T Consensus 135 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l 165 (220)
T 2v70_A 135 SLYDNQITTVAPGAFDTLHSLSTLNLLANPF 165 (220)
T ss_dssp ECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred ECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence 4444433333333333334444444444433
No 114
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.71 E-value=2.5e-17 Score=146.36 Aligned_cols=228 Identities=11% Similarity=0.003 Sum_probs=165.6
Q ss_pred ChhhhC--------CCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCcc---
Q 035512 94 PSAIFT--------TYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMF--- 162 (372)
Q Consensus 94 ~~~~~~--------l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~--- 162 (372)
..+|.+ +.+|+.+++.+ .++......|.++++|+.++++.+.+. .++...|..+.++..+.......
T Consensus 86 ~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~-~i~~~aF~~~~~l~~l~~~~~~~~~~ 163 (329)
T 3sb4_A 86 AYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAP-NLLPEALADSVTAIFIPLGSSDAYRF 163 (329)
T ss_dssp TTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCC-EECTTSSCTTTCEEEECTTCTHHHHT
T ss_pred HHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCcc-ccchhhhcCCCceEEecCcchhhhhc
Confidence 346677 99999999998 787777788999999999999999888 78888888888888777665221
Q ss_pred -CccCCccCcCCCCCc-EEEeecccC-ccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCc
Q 035512 163 -HGAIPSNLSNCTYLR-ILSLAYNDF-SGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIP 239 (372)
Q Consensus 163 -~~~~~~~l~~l~~L~-~L~l~~~~~-~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 239 (372)
.......+..+..|+ .+.+..... .......-....++..+.+.+.-...........+++|+.+++++|.++.+..
T Consensus 164 ~~~i~~~~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~ 243 (329)
T 3sb4_A 164 KNRWEHFAFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPD 243 (329)
T ss_dssp STTTTTSCEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECT
T ss_pred cccccccccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecH
Confidence 222334455666666 444443211 10010111123456666665542221111122347899999999998988888
Q ss_pred ccccCCCCCCEEEccCCccccccCccccCcCCCC-EEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccc
Q 035512 240 PEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLK-ALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTL 318 (372)
Q Consensus 240 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~ 318 (372)
..|.++.+|+++++.+| +..+...+|.++++|+ .+.+.+ .+ ..++...|.++..|+.++++.+.++...+.+|
T Consensus 244 ~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l----~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF 317 (329)
T 3sb4_A 244 FTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SV----TAIEFGAFMGCDNLRYVLATGDKITTLGDELF 317 (329)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TC----CEECTTTTTTCTTEEEEEECSSCCCEECTTTT
T ss_pred hhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cc----eEEchhhhhCCccCCEEEeCCCccCccchhhh
Confidence 88999999999999988 7667788999999999 999987 44 55677788899999999999999987778899
Q ss_pred cCCCCCCEEec
Q 035512 319 GNLRNLERLNL 329 (372)
Q Consensus 319 ~~~~~L~~L~l 329 (372)
.++++|+.++.
T Consensus 318 ~~~~~L~~ly~ 328 (329)
T 3sb4_A 318 GNGVPSKLIYK 328 (329)
T ss_dssp CTTCCCCEEEC
T ss_pred cCCcchhhhcc
Confidence 99999998864
No 115
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=1.5e-15 Score=137.99 Aligned_cols=267 Identities=12% Similarity=0.103 Sum_probs=192.8
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCcc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLE 153 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~ 153 (372)
..+..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++......|.++ +|+.+.+.. .+. .+....|..|++|+
T Consensus 110 ~~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~-~I~~~aF~~c~~L~ 183 (401)
T 4fdw_A 110 EILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLE-QLKEDIFYYCYNLK 183 (401)
T ss_dssp EECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCC-EECSSTTTTCTTCC
T ss_pred EecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-Ccc-EehHHHhhCcccCC
Confidence 34467788877653 332445566665 6888888765 554555666664 688888875 454 67777777888899
Q ss_pred EEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCc
Q 035512 154 ILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNN 233 (372)
Q Consensus 154 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 233 (372)
.+++..+.+.......+. +..|+.+.+..+ +.......|..+++|+.+.+..+ +......+|.+ .+|+.+.+.. .
T Consensus 184 ~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~ 258 (401)
T 4fdw_A 184 KADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-G 258 (401)
T ss_dssp EEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-T
T ss_pred eeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-C
Confidence 998888877765555665 578888888754 55566677888888998888764 44445556666 6788888854 4
Q ss_pred ccccCcccccCCCCCCEEEccCCccc-----cccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCC
Q 035512 234 LQEKIPPEIGNLRNLEELNLGDNKLV-----GTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENN 308 (372)
Q Consensus 234 ~~~~~~~~l~~~~~L~~L~l~~~~~~-----~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 308 (372)
+..+...+|.+|++|+.+.+.++.+. .+...+|.+|++|+.+.+.++ + ..+....|.++..|+.+.+..+
T Consensus 259 i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~-i----~~I~~~aF~~c~~L~~l~lp~~ 333 (401)
T 4fdw_A 259 VTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES-I----RILGQGLLGGNRKVTQLTIPAN 333 (401)
T ss_dssp CCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT-C----CEECTTTTTTCCSCCEEEECTT
T ss_pred ccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc-e----EEEhhhhhcCCCCccEEEECcc
Confidence 56666778888999999998877653 356678889999999998843 4 4566777888888888888655
Q ss_pred ccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCC-CCcEEeCcCCcc
Q 035512 309 SFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFK-SLTHIVLSNNPL 363 (372)
Q Consensus 309 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~l 363 (372)
++.....+|.+| +|+.+++.+|........ .|.+++ .++.|.+..+.+
T Consensus 334 -l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~-----~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 334 -VTQINFSAFNNT-GIKEVKVEGTTPPQVFEK-----VWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp -CCEECTTSSSSS-CCCEEEECCSSCCBCCCS-----SCCCSCTTCCEEEECGGGH
T ss_pred -ccEEcHHhCCCC-CCCEEEEcCCCCcccccc-----cccCCCCCccEEEeCHHHH
Confidence 555566788888 999999999876665554 456664 688888877654
No 116
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.3e-16 Score=130.93 Aligned_cols=150 Identities=17% Similarity=0.204 Sum_probs=76.3
Q ss_pred CCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCee
Q 035512 124 KSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGL 203 (372)
Q Consensus 124 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L 203 (372)
+++|++|++++|.+. .++ . +..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++|
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~-l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-G-IEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-T-GGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred cCCccEEeccCCCcc-ChH-H-HhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 344444444444443 333 1 2234445555555443321 1234445555555555555554444445555555555
Q ss_pred eccCCccccccCccccCCCCCCEEEccCCc-ccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 204 YLGANRLQGEIPREFGNLAVLELMSLAGNN-LQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 204 ~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
++++|.+.+..+..+..+++|++|++++|. +.. .+ .+..+++|++|++++|.+.+. + .+..+++|++|++++|++
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~-~~-~l~~l~~L~~L~l~~n~i~~~-~-~l~~l~~L~~L~l~~N~i 193 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITD-IM-PLKTLPELKSLNIQFDGVHDY-R-GIEDFPKLNQLYAFSQTI 193 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCC-CG-GGGGCSSCCEEECTTBCCCCC-T-TGGGCSSCCEEEECBC--
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCCCccc-cH-hhcCCCCCCEEECCCCCCcCh-H-HhccCCCCCEEEeeCccc
Confidence 555555554444455555566666666655 332 22 455566666666666666532 2 455666666666666655
No 117
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.70 E-value=2.9e-15 Score=136.10 Aligned_cols=253 Identities=11% Similarity=0.108 Sum_probs=159.4
Q ss_pred ccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChh
Q 035512 65 LTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPAN 144 (372)
Q Consensus 65 l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 144 (372)
++.....+|..+ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .++......|.++++|+.++++.+.+. .++..
T Consensus 124 i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~ 198 (401)
T 4fdw_A 124 VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKIT-KLPAS 198 (401)
T ss_dssp CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCS-EECTT
T ss_pred cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcce-Eechh
Confidence 333444556664 6777777655 443444555553 577777764 455455566777777777777777766 66666
Q ss_pred hhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCC
Q 035512 145 ICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVL 224 (372)
Q Consensus 145 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 224 (372)
.|. +.+|+.+.+..+ +.......+.++++|+.+++..+ +.......|.. .+|+.+.+.. .+......+|.+|++|
T Consensus 199 aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L 273 (401)
T 4fdw_A 199 TFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVTNIASRAFYYCPEL 273 (401)
T ss_dssp TTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCCEECTTTTTTCTTC
T ss_pred hEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-CccEEChhHhhCCCCC
Confidence 664 567777777643 44455566777777777777654 33344455555 5677777743 3444455667777777
Q ss_pred CEEEccCCccc-----ccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccc
Q 035512 225 ELMSLAGNNLQ-----EKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEV 299 (372)
Q Consensus 225 ~~L~l~~~~~~-----~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~ 299 (372)
+.+.+.++... .+....|.+|++|+.+.+.+ .+..+...+|.+|++|+.+.+..+ + ..+....|.++ .
T Consensus 274 ~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l----~~I~~~aF~~~-~ 346 (401)
T 4fdw_A 274 AEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-V----TQINFSAFNNT-G 346 (401)
T ss_dssp CEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-C----CEECTTSSSSS-C
T ss_pred CEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-c----cEEcHHhCCCC-C
Confidence 77777665543 34556677777777777774 355555667777777777777544 2 34455566666 7
Q ss_pred ccccccCCCccccCCCccccCCC-CCCEEecCCCcc
Q 035512 300 LLLWDLENNSFSGFIPNTLGNLR-NLERLNLGDNYL 334 (372)
Q Consensus 300 L~~l~l~~~~~~~~~~~~~~~~~-~L~~L~l~~n~~ 334 (372)
|+.+.+.+|.........|.+++ .++.|.+..+.+
T Consensus 347 L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 347 IKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp CCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred CCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 77777777766655555666663 667777766543
No 118
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.70 E-value=1.1e-16 Score=131.23 Aligned_cols=153 Identities=19% Similarity=0.292 Sum_probs=68.8
Q ss_pred CCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEE
Q 035512 173 CTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELN 252 (372)
Q Consensus 173 l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 252 (372)
++.|++|+++++.+. ..+ .+..+++|++|++++|.+.. ...+..+++|++|++++|.+....+..+..+++|++|+
T Consensus 43 l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 118 (197)
T 4ezg_A 43 MNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118 (197)
T ss_dssp HHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEE
T ss_pred cCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEE
Confidence 344444444444443 122 23444444444444443321 12334444444444444444433344444445555555
Q ss_pred ccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCC
Q 035512 253 LGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDN 332 (372)
Q Consensus 253 l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 332 (372)
+++|.+++..+..+..+++|++|++++|.. ++. ++ .+..+++|++|++++|
T Consensus 119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~---------------------------i~~-~~-~l~~l~~L~~L~l~~n 169 (197)
T 4ezg_A 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGA---------------------------ITD-IM-PLKTLPELKSLNIQFD 169 (197)
T ss_dssp CCSSBCBGGGHHHHTTCSSCCEEECCSCTB---------------------------CCC-CG-GGGGCSSCCEEECTTB
T ss_pred ecCCccCcHhHHHHhhCCCCCEEEccCCCC---------------------------ccc-cH-hhcCCCCCCEEECCCC
Confidence 555544433344444444444444444431 221 12 3445556666666666
Q ss_pred ccccCCCCCcccccccCCCCCcEEeCcCCcccc
Q 035512 333 YLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 333 ~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
.+.... .+..+++|++|++++|++.+
T Consensus 170 ~i~~~~-------~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 170 GVHDYR-------GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CCCCCT-------TGGGCSSCCEEEECBC----
T ss_pred CCcChH-------HhccCCCCCEEEeeCcccCC
Confidence 554432 24555666666666666543
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=1.7e-16 Score=136.18 Aligned_cols=172 Identities=21% Similarity=0.247 Sum_probs=129.7
Q ss_pred CCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEE
Q 035512 149 LPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMS 228 (372)
Q Consensus 149 l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 228 (372)
+.++..+++.++.+.+.. .+..+++|++|++++|.+... + .+..+++|+.|++++|.+.+..+ +..+++|+.|+
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHHhcCCCccccc--chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 445666677777776433 466788999999999888743 3 67788899999999998875443 78888999999
Q ss_pred ccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCC
Q 035512 229 LAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENN 308 (372)
Q Consensus 229 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~ 308 (372)
+++|.+....+ +.. ++|++|++++|.+++. ..+.++++|+.|++++|++.+ ++ .+..+++|+.|++++|
T Consensus 92 L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~----~~--~l~~l~~L~~L~L~~N 160 (263)
T 1xeu_A 92 VNRNRLKNLNG--IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKS----IV--MLGFLSKLEVLDLHGN 160 (263)
T ss_dssp CCSSCCSCCTT--CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCB----CG--GGGGCTTCCEEECTTS
T ss_pred CCCCccCCcCc--ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCC----Ch--HHccCCCCCEEECCCC
Confidence 99998876332 223 7899999999988753 357888899999999988833 32 4566777888889888
Q ss_pred ccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 309 SFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 309 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
.+++. ..+..+++|+.|++++|++...+.
T Consensus 161 ~i~~~--~~l~~l~~L~~L~l~~N~~~~~~~ 189 (263)
T 1xeu_A 161 EITNT--GGLTRLKKVNWIDLTGQKCVNEPV 189 (263)
T ss_dssp CCCBC--TTSTTCCCCCEEEEEEEEEECCCE
T ss_pred cCcch--HHhccCCCCCEEeCCCCcccCCcc
Confidence 88765 567788888999999888876643
No 120
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.66 E-value=3.7e-16 Score=134.13 Aligned_cols=164 Identities=23% Similarity=0.331 Sum_probs=81.8
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCc
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNT 136 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (372)
.++++++.+++.. .+..+++|++|++++|.++ .++ .+..+++|++|++++|.+++..+ +..+++|++|++++|.
T Consensus 23 ~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~N~ 96 (263)
T 1xeu_A 23 KQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNR 96 (263)
T ss_dssp HHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCSSC
T ss_pred HHHhcCCCccccc--chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCCCc
Confidence 3344444444222 2444555555555555554 222 34445555555555554443222 4444445555555444
Q ss_pred cccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCc
Q 035512 137 LSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPR 216 (372)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 216 (372)
+. .++. +.. ++|++|++++|.+++. ..+..+++|+.|++++|.+.+. .
T Consensus 97 l~-~l~~--------------------------~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~--~ 144 (263)
T 1xeu_A 97 LK-NLNG--------------------------IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI--V 144 (263)
T ss_dssp CS-CCTT--------------------------CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC--G
T ss_pred cC-CcCc--------------------------ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC--h
Confidence 43 2221 111 4555555555554432 2355555566666666655433 2
Q ss_pred cccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccc
Q 035512 217 EFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVG 260 (372)
Q Consensus 217 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 260 (372)
.+..+++|+.|++++|.+... ..+..+++|++|++++|.+..
T Consensus 145 ~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 145 MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccC
Confidence 455566666666666666544 445666667777777766653
No 121
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.65 E-value=4.5e-19 Score=168.18 Aligned_cols=213 Identities=18% Similarity=0.138 Sum_probs=140.1
Q ss_pred cCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCC
Q 035512 122 FNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLK 201 (372)
Q Consensus 122 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 201 (372)
..+++|+.|++++|.+. .+|..+. .+++|+.|++.+|......+.. +..+...+..+..+..+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~-~l~~L~~L~l~~n~~l~~l~~l-----------l~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELE-SCKELQELEPENKWCLLTIILL-----------MRALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHH-HHHHHHHHCTTCHHHHHHHHHH-----------HHHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHH-HHHHHHHhccccchhhhhHHHH-----------HHhcccccCCHHHHHHHHhcc
Confidence 45667777777777776 6666665 5677777776544310000000 000011223334445555555
Q ss_pred eee-ccCCccccccC-----cccc--CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCC
Q 035512 202 GLY-LGANRLQGEIP-----REFG--NLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLK 273 (372)
Q Consensus 202 ~L~-l~~~~~~~~~~-----~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~ 273 (372)
.|+ ++.+.+..... ..+. ....|+.|++++|.+.. +|. +..+++|+.|++++|.++ .+|..+.++++|+
T Consensus 413 ~L~~l~~n~~~~L~~l~l~~n~i~~l~~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~ 489 (567)
T 1dce_A 413 AVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLE 489 (567)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHHHHHTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCC
T ss_pred cCcchhhcccchhhhhhhhcccccccCccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCC
Confidence 555 33332211000 0000 11258899999998876 454 888899999999999988 6788899999999
Q ss_pred EEeccCCccccccCCCCCcCcCccccccccccCCCccccCC-CccccCCCCCCEEecCCCccccCCCCCcccccccCCCC
Q 035512 274 ALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFI-PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKS 352 (372)
Q Consensus 274 ~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~ 352 (372)
.|++++|.+ ..++ .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++.+.++.... .+..+|+
T Consensus 490 ~L~Ls~N~l----~~lp--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~--l~~~lp~ 561 (567)
T 1dce_A 490 VLQASDNAL----ENVD--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQER--LAEMLPS 561 (567)
T ss_dssp EEECCSSCC----CCCG--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTH--HHHHCTT
T ss_pred EEECCCCCC----CCCc--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHH--HHHHCcc
Confidence 999999988 3444 5677888888899999998776 88899999999999999999887765221 2344788
Q ss_pred CcEEeC
Q 035512 353 LTHIVL 358 (372)
Q Consensus 353 L~~L~l 358 (372)
|+.|++
T Consensus 562 L~~L~l 567 (567)
T 1dce_A 562 VSSILT 567 (567)
T ss_dssp CSEEEC
T ss_pred cCccCC
Confidence 988864
No 122
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.65 E-value=1.8e-17 Score=161.88 Aligned_cols=235 Identities=20% Similarity=0.246 Sum_probs=109.4
Q ss_pred CCChhHHHHHHHHHHhccCCCCccccCCCC-CCCCCCcccceeecCCCCcEEEEEeCCCCccccccccccCCCCCCEEEC
Q 035512 6 STITTDRDALLALKAHITHDPTNFFAKNWN-TNISFCNWTGVACDVHRHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNL 84 (372)
Q Consensus 6 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l 84 (372)
+..+.++.++..+...+.......-. .|. .......|.+..+. .++++.|++.++.+.. .+..+.....|+.+.+
T Consensus 128 s~~~~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~s--~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 128 SLVDCTKQALMEMADTLTDSKTAKKQ-QPTGDSTPSGTATNSAVS--TPLTPKIELFANGKDE-ANQALLQHKKLSQYSI 203 (727)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTC--------------------------------------------------------
T ss_pred hccccchhhhhhhhhhcccccCcccC-CCcCCCCccccCCCceec--CCccceEEeeCCCCCc-chhhHhhcCccCcccc
Confidence 34567788898888887555444444 553 33345667766654 5678888888887764 3333222223333222
Q ss_pred -----CCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccC
Q 035512 85 -----SFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQE 159 (372)
Q Consensus 85 -----~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (372)
+.+.+. ..+..+..+..|+.|+|++|.+. .++..+..+++|++|++++|.+. .+|..+. .+++|++|+|++
T Consensus 204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~-~l~~L~~L~Ls~ 279 (727)
T 4b8c_D 204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIK-NLSNLRVLDLSH 279 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGG-GGTTCCEEECTT
T ss_pred cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhh-CCCCCCEEeCcC
Confidence 222332 34566777778888888888776 55666667788888888888877 7776554 678888888888
Q ss_pred CccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCC-CCEEEccCCcccccC
Q 035512 160 NMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAV-LELMSLAGNNLQEKI 238 (372)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~ 238 (372)
|.+. .+|..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.+.+..+..+..... ...+++.+|.+....
T Consensus 280 N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~ 357 (727)
T 4b8c_D 280 NRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPL 357 (727)
T ss_dssp SCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCC
T ss_pred CcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcC
Confidence 8777 55777777888888888888776 45656777888888888888777665555533211 112445555554433
Q ss_pred cccccCCCCCCEEEccCC
Q 035512 239 PPEIGNLRNLEELNLGDN 256 (372)
Q Consensus 239 ~~~l~~~~~L~~L~l~~~ 256 (372)
|. .|+.|+++.|
T Consensus 358 p~------~l~~l~l~~n 369 (727)
T 4b8c_D 358 PH------ERRFIEINTD 369 (727)
T ss_dssp CC------C---------
T ss_pred cc------ccceeEeecc
Confidence 32 3444455544
No 123
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.62 E-value=3.5e-18 Score=162.12 Aligned_cols=186 Identities=24% Similarity=0.270 Sum_probs=103.8
Q ss_pred cCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc-------------ccCCCCccccCCCCCCEEE-ccCCcccc
Q 035512 74 GNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ-------------LSGALPSFIFNKSSLQHLD-FTFNTLSG 139 (372)
Q Consensus 74 ~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-------------~~~~~~~~l~~l~~L~~L~-l~~~~~~~ 139 (372)
..+++|+.|++++|.++ .+|..++.+++|+.|++++|. ..+..|..+..+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45667777777777765 567777777777777765543 1222233333344444444 2222211
Q ss_pred ccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCcccc
Q 035512 140 EIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFG 219 (372)
Q Consensus 140 ~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 219 (372)
. |+.+.+.+|.+... + ...|+.|++++|.+++ +|. +..+++|+.|++++|.+. .+|..++
T Consensus 424 ~-----------L~~l~l~~n~i~~l-~-----~~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 D-----------LRSKFLLENSVLKM-E-----YADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp H-----------HHHHHHHHHHHHHH-H-----HTTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred h-----------hhhhhhhccccccc-C-----ccCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 1 11111111122111 0 0135666666666653 333 666666666666666665 4556666
Q ss_pred CCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCcccccc-CccccCcCCCCEEeccCCccc
Q 035512 220 NLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTI-PTAIFNVSKLKALKLYSNSLL 283 (372)
Q Consensus 220 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~~ 283 (372)
.+++|+.|++++|.++. +| .+..+++|++|++++|.+++.. |..+.++++|+.|++++|.+.
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 66667777777666654 34 5666667777777777666554 666667777777777777663
No 124
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.60 E-value=3.4e-15 Score=119.12 Aligned_cols=139 Identities=22% Similarity=0.202 Sum_probs=68.3
Q ss_pred CCCEEEccCCccc-ccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccccc
Q 035512 223 VLELMSLAGNNLQ-EKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLL 301 (372)
Q Consensus 223 ~L~~L~l~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~ 301 (372)
+|+.|++++|.+. ..+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+ .....+..++.|+
T Consensus 25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~~l~~L~ 98 (168)
T 2ell_A 25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFG----GLDMLAEKLPNLT 98 (168)
T ss_dssp SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCS----CCCHHHHHCTTCC
T ss_pred cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCch----HHHHHHhhCCCCC
Confidence 3444444444433 12233334444444444444444322 334444444444444444421 1111122334444
Q ss_pred ccccCCCccccCC-CccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCCcccccCCCC
Q 035512 302 LWDLENNSFSGFI-PNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLDGILPKT 370 (372)
Q Consensus 302 ~l~l~~~~~~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~~~~p~~ 370 (372)
.|++++|.+++.. +..+..+++|+.|++++|++.+.++.. ...+..+++|++|++++|.+.. +|+.
T Consensus 99 ~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~--~~~~~~l~~L~~L~l~~n~~~~-~~~~ 165 (168)
T 2ell_A 99 HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR--ESVFKLLPQLTYLDGYDREDQE-APDS 165 (168)
T ss_dssp EEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHH--HHHHTTCSSCCEETTEETTSCB-CCSS
T ss_pred EEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHH--HHHHHhCccCcEecCCCCChhh-cccc
Confidence 4455555554321 145666777777777777777655400 0035677788888888887775 5543
No 125
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.59 E-value=1.2e-14 Score=118.51 Aligned_cols=132 Identities=27% Similarity=0.351 Sum_probs=96.8
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcc-cccCCCCCCEEEccCCccccccCccccCcCCCCEEeccC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPP-EIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYS 279 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 279 (372)
+.++++++.+. .+|..+. ..++.|++++|.+....+. .+..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 57778777775 3444332 3788888888887765553 477788888888888888877777888888888888888
Q ss_pred CccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 280 NSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 280 ~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
|++ ..++...|..+++|+.|++++|++++..+..+..+++|++|++++|++....+
T Consensus 88 N~l----~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 143 (192)
T 1w8a_A 88 NKI----KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCH 143 (192)
T ss_dssp CCC----CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGG
T ss_pred CcC----CccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCc
Confidence 887 33444456667777777888888877777777788888888888887765443
No 126
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.58 E-value=1.3e-14 Score=118.27 Aligned_cols=128 Identities=27% Similarity=0.330 Sum_probs=99.2
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCCh-hhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPS-AIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTF 134 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~ 134 (372)
+.++++++.++ .+|..+.. ++++|++++|.+++..+. .+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 46778888886 55654433 899999999998855554 478889999999999998877788888888899999988
Q ss_pred CccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCc
Q 035512 135 NTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFS 187 (372)
Q Consensus 135 ~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 187 (372)
|.+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.
T Consensus 88 N~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 139 (192)
T 1w8a_A 88 NKIK-EISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139 (192)
T ss_dssp CCCC-EECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred CcCC-ccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCcc
Confidence 8887 455444557788888888888887777777777777888887777665
No 127
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.58 E-value=2.6e-14 Score=115.03 Aligned_cols=130 Identities=22% Similarity=0.262 Sum_probs=65.7
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
+.++++++.+.. +|..+ .+.|+.|++++|.+....+..+..+++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 10 ~~l~~~~~~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 86 (177)
T 2o6r_A 10 TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN 86 (177)
T ss_dssp TEEECCSSCCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEecCCCCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence 445555555442 22111 245556666665555444444555555666666655555444444555555555555555
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccC
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSS 337 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 337 (372)
.+ ..++...+..+++|+.|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus 87 ~l----~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~ 139 (177)
T 2o6r_A 87 KL----QSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 139 (177)
T ss_dssp CC----CCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred Cc----cccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeecc
Confidence 55 333333344445555555555555544443445555555555555555443
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.58 E-value=1.1e-14 Score=116.20 Aligned_cols=131 Identities=23% Similarity=0.249 Sum_probs=74.8
Q ss_pred CCccEEEccCCccC-ccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEE
Q 035512 150 PFLEILSLQENMFH-GAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMS 228 (372)
Q Consensus 150 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 228 (372)
++|+.|++++|.+. +.++..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 101 (168)
T 2ell_A 24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN 101 (168)
T ss_dssp TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence 44555555555544 23344445555555555555555433 3455555666666666655544555555566666666
Q ss_pred ccCCcccccC-cccccCCCCCCEEEccCCccccccC---ccccCcCCCCEEeccCCcc
Q 035512 229 LAGNNLQEKI-PPEIGNLRNLEELNLGDNKLVGTIP---TAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 229 l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~~~~~ 282 (372)
+++|.+.... +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 6666655432 2456666677777777776664433 3566677777777776665
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.57 E-value=2.5e-15 Score=117.34 Aligned_cols=126 Identities=18% Similarity=0.176 Sum_probs=57.9
Q ss_pred CCCEEECCCCcCC-CCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEE
Q 035512 78 SLQSLNLSFNRLS-GSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILS 156 (372)
Q Consensus 78 ~L~~L~l~~~~~~-~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~ 156 (372)
+|++|++++|.++ +.++..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+.+|. .+..+++|++|+
T Consensus 18 ~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~-~~~~l~~L~~L~ 94 (149)
T 2je0_A 18 DVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEV-LAEKCPNLTHLN 94 (149)
T ss_dssp GCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHH-HHHHCTTCCEEE
T ss_pred cCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHH-HhhhCCCCCEEE
Confidence 3444444444443 23333334444444444444444322 3344444555555555544422222 222355555555
Q ss_pred ccCCccCcc-CCccCcCCCCCcEEEeecccCccccC---cchhCCCCCCeeecc
Q 035512 157 LQENMFHGA-IPSNLSNCTYLRILSLAYNDFSGAIP---REIGNLTKLKGLYLG 206 (372)
Q Consensus 157 l~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 206 (372)
+++|.+.+. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555554432 12344555556666665555554333 345556666666553
No 130
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.57 E-value=4.1e-14 Score=115.37 Aligned_cols=128 Identities=24% Similarity=0.353 Sum_probs=77.2
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
+.++++++.+. .+|..+ .+.++.|++++|.+.. +|..+..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~~-ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCCS-CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCch-hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 45666666655 233322 2456667777666653 4456666666777777766666555566666666666666666
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCcccc
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
.+ ..++...|..+++|+.|++++|.++...+..+..+++|+.|++++|++..
T Consensus 89 ~l----~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C 140 (193)
T 2wfh_A 89 RL----RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC 140 (193)
T ss_dssp CC----CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred cc----CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence 66 34444455566666666666666665544556666666666666666543
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.56 E-value=5.3e-14 Score=114.70 Aligned_cols=127 Identities=23% Similarity=0.298 Sum_probs=102.2
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (372)
+.++++++.++ .+|..+ .++|++|++++|.++ .+|..+..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 46788888887 555543 358999999999998 67788899999999999999998777778888999999999999
Q ss_pred ccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCc
Q 035512 136 TLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFS 187 (372)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 187 (372)
.+. .++...+..+++|+.|++++|.+....+..+..+++|+.|++++|.+.
T Consensus 89 ~l~-~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 89 RLR-CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp CCC-BCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred ccC-EeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 888 666666667888888888888887666666777888888888877654
No 132
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.54 E-value=1.1e-13 Score=111.22 Aligned_cols=128 Identities=22% Similarity=0.238 Sum_probs=94.0
Q ss_pred EEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCc
Q 035512 57 VLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNT 136 (372)
Q Consensus 57 ~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (372)
.++++++.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|.++...+..+..+++|++|++++|.
T Consensus 11 ~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp EEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 4455566665 344322 3688999999998886556667888889999998888886666667788888888888888
Q ss_pred cccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCcc
Q 035512 137 LSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSG 188 (372)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 188 (372)
+. .++...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+..
T Consensus 88 l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 88 LQ-SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp CC-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cc-ccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 87 5666655577888888888887776555556677778888887776653
No 133
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.54 E-value=1.3e-14 Score=113.34 Aligned_cols=127 Identities=21% Similarity=0.252 Sum_probs=69.8
Q ss_pred CCccEEEccCCccC-ccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEE
Q 035512 150 PFLEILSLQENMFH-GAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMS 228 (372)
Q Consensus 150 ~~L~~L~l~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 228 (372)
++++.|++++|.+. +..+..+..+++|++|++++|.+... ..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555444 33444445555555555555555433 3445555556666655555544444455556666666
Q ss_pred ccCCccccc-CcccccCCCCCCEEEccCCccccccC---ccccCcCCCCEEecc
Q 035512 229 LAGNNLQEK-IPPEIGNLRNLEELNLGDNKLVGTIP---TAIFNVSKLKALKLY 278 (372)
Q Consensus 229 l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~L~~L~l~ 278 (372)
+++|.+... .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 666665542 22456666667777777776664433 356666677766654
No 134
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.52 E-value=4.5e-15 Score=145.06 Aligned_cols=152 Identities=23% Similarity=0.260 Sum_probs=115.9
Q ss_pred EeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccc
Q 035512 59 NISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLS 138 (372)
Q Consensus 59 ~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 138 (372)
++..+.+. ..+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|++|++++|.+.
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 33334343 55777899999999999999998 77888889999999999999998 77888999999999999999998
Q ss_pred cccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCC-CCeeeccCCccccccCc
Q 035512 139 GEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTK-LKGLYLGANRLQGEIPR 216 (372)
Q Consensus 139 ~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~ 216 (372)
.+|..+. .+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..... ...+++++|.+.+..|.
T Consensus 284 -~lp~~~~-~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~ 359 (727)
T 4b8c_D 284 -SLPAELG-SCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH 359 (727)
T ss_dssp -SCCSSGG-GGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC
T ss_pred -ccChhhc-CCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc
Confidence 8888765 7999999999999987 66777999999999999999998776666543321 22356777777665554
No 135
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.51 E-value=2.3e-12 Score=117.23 Aligned_cols=129 Identities=16% Similarity=0.159 Sum_probs=86.1
Q ss_pred cccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCc
Q 035512 217 EFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPN 296 (372)
Q Consensus 217 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 296 (372)
.+.++..++.+.+..+. .......|..+..++.+......+ ....+.++.+|+.+.+..+ + ..+....|.+
T Consensus 248 ~f~~~~~l~~~~~~~~~-~~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i----~~I~~~aF~~ 318 (394)
T 4fs7_A 248 VFYGCTDLESISIQNNK-LRIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-V----KFIGEEAFES 318 (394)
T ss_dssp TTTTCSSCCEEEECCTT-CEECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-C----CEECTTTTTT
T ss_pred cccccccceeEEcCCCc-ceeeccccccccccceeccCceee---ccccccccccccccccccc-c----ceechhhhcC
Confidence 44555566666655442 233444556666666666554432 2345677788888887654 2 3456667888
Q ss_pred cccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCcccccccCCCCCcEEeCcCC
Q 035512 297 LEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFKSLTHIVLSNN 361 (372)
Q Consensus 297 l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 361 (372)
+.+|+.+++..+ ++.....+|.+|++|+.+.+..+ +...... +|.+|++|+.+++..+
T Consensus 319 c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~-----aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 319 CTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGAN-----AFQGCINLKKVELPKR 376 (394)
T ss_dssp CTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTT-----TBTTCTTCCEEEEEGG
T ss_pred CCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHH-----HhhCCCCCCEEEECCC
Confidence 888888888654 55556678999999999999876 5444443 6889999999998754
No 136
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.48 E-value=1.2e-13 Score=110.87 Aligned_cols=132 Identities=17% Similarity=0.150 Sum_probs=83.7
Q ss_pred ccCCCCCCEEECCCCcCCCCCChhhhCC-CCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCC
Q 035512 73 LGNLSSLQSLNLSFNRLSGSIPSAIFTT-YTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPF 151 (372)
Q Consensus 73 ~~~l~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~ 151 (372)
+..+++|++|++++|.++ .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+. .++...+..+++
T Consensus 15 ~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~ 89 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPD 89 (176)
T ss_dssp EECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTT
T ss_pred cCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCccc-ccCcchhhcCCC
Confidence 556677777777777776 3343 4443 3777777777777643 45667777777777777776 556555556777
Q ss_pred ccEEEccCCccCccCCc--cCcCCCCCcEEEeecccCccccCc---chhCCCCCCeeeccCCcc
Q 035512 152 LEILSLQENMFHGAIPS--NLSNCTYLRILSLAYNDFSGAIPR---EIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 152 L~~L~l~~~~~~~~~~~--~l~~l~~L~~L~l~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 210 (372)
|++|++++|.+.. .+. .+..+++|++|++++|.+...... .+..+++|+.|+++.|..
T Consensus 90 L~~L~L~~N~i~~-~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~ 152 (176)
T 1a9n_A 90 LTELILTNNSLVE-LGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL 152 (176)
T ss_dssp CCEEECCSCCCCC-GGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred CCEEECCCCcCCc-chhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence 7777777777643 232 555666677777776666532211 255666666666665544
No 137
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.45 E-value=1.1e-11 Score=112.73 Aligned_cols=144 Identities=11% Similarity=0.089 Sum_probs=74.2
Q ss_pred EEEEEeCCCCccccccccccCCCCCCEEECCCCc---CCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEE
Q 035512 55 VTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNR---LSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLD 131 (372)
Q Consensus 55 l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 131 (372)
++.+.+... ++.+...+|..|.+|+.+.+..+. ++.....+|..+..|+.+.+..+ ++......|..+.+|+.+.
T Consensus 66 L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L~~i~ 143 (394)
T 4gt6_A 66 LTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEELDTVT 143 (394)
T ss_dssp CCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTCCEEE
T ss_pred CEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhccccccc
Confidence 555555443 444445556666666666665442 33233445556666665555432 3323444556666666666
Q ss_pred ccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeec
Q 035512 132 FTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYL 205 (372)
Q Consensus 132 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l 205 (372)
+... +. .+....|..+.+|+.+.+..+ +.......+.. ..|+.+.+..+... .....+..+.++.....
T Consensus 144 lp~~-~~-~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~~~~~ 212 (394)
T 4gt6_A 144 IPEG-VT-SVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALSTITS 212 (394)
T ss_dssp CCTT-CC-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCCEEEE
T ss_pred ccce-ee-eecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccceecc
Confidence 6532 22 455555556666776666543 22233333432 45666666544322 33445555555555443
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.44 E-value=1.7e-13 Score=110.10 Aligned_cols=58 Identities=21% Similarity=0.267 Sum_probs=26.0
Q ss_pred CCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCcc
Q 035512 223 VLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 223 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 282 (372)
+|+.|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i 100 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL 100 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCC
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcC
Confidence 444444444444332 2344444455555555544433223334444555555544444
No 139
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.44 E-value=1.5e-11 Score=111.89 Aligned_cols=278 Identities=15% Similarity=0.199 Sum_probs=166.4
Q ss_pred ccccccccccCCC-CCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc---ccCCCCccccCCCCCCEEEccCCccccc
Q 035512 65 LTGTIPSQLGNLS-SLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ---LSGALPSFIFNKSSLQHLDFTFNTLSGE 140 (372)
Q Consensus 65 l~~~~~~~~~~l~-~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~---~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 140 (372)
++.+...+|..++ .|+.+.+..+ ++.....+|.+|.+|+.+.+..+. ++......|..+.+|+.+.+..+ +. .
T Consensus 51 Vt~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~-~ 127 (394)
T 4gt6_A 51 VSKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VT-E 127 (394)
T ss_dssp EEEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CS-E
T ss_pred eeEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cc-e
Confidence 4444456677775 5888888653 554556778888888888887653 44445566777888887776643 33 5
Q ss_pred cChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccC
Q 035512 141 IPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGN 220 (372)
Q Consensus 141 ~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 220 (372)
+....|..+.+|+.+.+... +.......+..+..|+.+.+..+ +.......|. ...|+.+.+..+... .....+..
T Consensus 128 I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~-~~~l~~i~ip~~~~~-i~~~af~~ 203 (394)
T 4gt6_A 128 IDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFT-GTALTQIHIPAKVTR-IGTNAFSE 203 (394)
T ss_dssp ECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTT-TCCCSEEEECTTCCE-ECTTTTTT
T ss_pred ehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEecccccc-ccceeEEEECCcccc-cccchhhh
Confidence 66667778888888888653 33345556777888888887654 3323334443 356777777543221 22233334
Q ss_pred CCCCCEEEccCC------------------------------------cccccCcccccCCCCCCEEEccCCccccccCc
Q 035512 221 LAVLELMSLAGN------------------------------------NLQEKIPPEIGNLRNLEELNLGDNKLVGTIPT 264 (372)
Q Consensus 221 ~~~L~~L~l~~~------------------------------------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 264 (372)
+..+........ .+......+|..+..|+.+.+.++.. .+...
T Consensus 204 c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~ 282 (394)
T 4gt6_A 204 CFALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETHAFDSCAYLASVKMPDSVV-SIGTG 282 (394)
T ss_dssp CTTCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTTTTTTCSSCCEEECCTTCC-EECTT
T ss_pred ccccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccceeeecccccEEecccccc-eecCc
Confidence 444433322111 11122334566677777777765533 24456
Q ss_pred cccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccccCCCCCccc
Q 035512 265 AIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTPELSFL 344 (372)
Q Consensus 265 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~ 344 (372)
+|.++++|+.+.+... + ..++...|.++.+|+.+.+..+ ++.....+|.+|.+|+++.|..+ +......
T Consensus 283 aF~~c~~L~~i~l~~~-i----~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~---- 351 (394)
T 4gt6_A 283 AFMNCPALQDIEFSSR-I----TELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPES---- 351 (394)
T ss_dssp TTTTCTTCCEEECCTT-C----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGG----
T ss_pred ccccccccccccCCCc-c----cccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHh----
Confidence 6777777777777532 2 3445556666777776677543 44344556777777777777544 3333322
Q ss_pred ccccCCCCCcEEeCcCCc
Q 035512 345 SSLSNFKSLTHIVLSNNP 362 (372)
Q Consensus 345 ~~l~~~~~L~~L~l~~~~ 362 (372)
+|.+|++|+.+++.++.
T Consensus 352 -aF~~C~~L~~i~~~~~~ 368 (394)
T 4gt6_A 352 -AFSNCTALNNIEYSGSR 368 (394)
T ss_dssp -GGTTCTTCCEEEESSCH
T ss_pred -HhhCCCCCCEEEECCce
Confidence 46677777777776654
No 140
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.43 E-value=9.6e-12 Score=113.13 Aligned_cols=281 Identities=15% Similarity=0.087 Sum_probs=170.7
Q ss_pred CCcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEccccc-------------------
Q 035512 52 RHRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQ------------------- 112 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~------------------- 112 (372)
..+++.+.+..+ ++.....+|..|.+|+.+++..+ ++.....+|..+..|+.+.+..+-
T Consensus 70 c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~~~~~~~ 147 (394)
T 4fs7_A 70 CRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDFKEITIP 147 (394)
T ss_dssp CTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCCSEEECC
T ss_pred CCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccccccccC
Confidence 357999999754 77666778999999999999754 433345567777777666554320
Q ss_pred --ccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCC--------------
Q 035512 113 --LSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYL-------------- 176 (372)
Q Consensus 113 --~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L-------------- 176 (372)
........|.++++|+.+.+..+. . .+....|..+.+|+.+.+..+ +.......+.++..|
T Consensus 148 ~~~~~i~~~aF~~c~~L~~i~l~~~~-~-~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~~ 224 (394)
T 4fs7_A 148 EGVTVIGDEAFATCESLEYVSLPDSM-E-TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLGD 224 (394)
T ss_dssp TTCCEECTTTTTTCTTCCEEECCTTC-C-EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEECT
T ss_pred ccccccchhhhcccCCCcEEecCCcc-c-eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEeeh
Confidence 111123345666777777776432 2 456666666777777766543 222222333333333
Q ss_pred --------cEEEeecccCccccCcchhCCCCCCeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCC
Q 035512 177 --------RILSLAYNDFSGAIPREIGNLTKLKGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNL 248 (372)
Q Consensus 177 --------~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 248 (372)
+.+.+... +.......+..+..++.+.+..+... .....+..+..++.+......+ ....+..+.+|
T Consensus 225 ~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L 299 (394)
T 4fs7_A 225 FALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSL 299 (394)
T ss_dssp TTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTC
T ss_pred hhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceee---ccccccccccc
Confidence 33333322 11123344556666666666554332 3445667777777777665433 33467777888
Q ss_pred CEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEe
Q 035512 249 EELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLN 328 (372)
Q Consensus 249 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~ 328 (372)
+.+.+.++ +..+...+|.++.+|+++++..+ + ..+...+|.++.+|+.+.+..+ ++.....+|.+|++|+.++
T Consensus 300 ~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ 372 (394)
T 4fs7_A 300 TEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-V----EEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVE 372 (394)
T ss_dssp CEEEECTT-CCEECTTTTTTCTTCCEECCCTT-C----CEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEE
T ss_pred cccccccc-cceechhhhcCCCCCCEEEeCCc-c----cEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEE
Confidence 88888665 44455677888888888888643 2 4455667777888887788665 5545566788888888888
Q ss_pred cCCCccccCCCCCcccccccCCCCCcEE
Q 035512 329 LGDNYLTSSTPELSFLSSLSNFKSLTHI 356 (372)
Q Consensus 329 l~~n~~~~~~~~~~~~~~l~~~~~L~~L 356 (372)
+..+- ... .. .|.++++|+.+
T Consensus 373 lp~~~-~~~-~~-----~F~~c~~L~~I 393 (394)
T 4fs7_A 373 LPKRL-EQY-RY-----DFEDTTKFKWI 393 (394)
T ss_dssp EEGGG-GGG-GG-----GBCTTCEEEEE
T ss_pred ECCCC-EEh-hh-----eecCCCCCcEE
Confidence 87642 111 11 46667776654
No 141
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.41 E-value=1.8e-15 Score=124.23 Aligned_cols=160 Identities=23% Similarity=0.289 Sum_probs=110.7
Q ss_pred hCCCCCCeeeccCCccccccCc------cccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccC
Q 035512 195 GNLTKLKGLYLGANRLQGEIPR------EFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFN 268 (372)
Q Consensus 195 ~~~~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~ 268 (372)
.....+..++++.+.+.+..+. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+. .+|..+..
T Consensus 15 ~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~ 91 (198)
T 1ds9_A 15 EERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAV 91 (198)
T ss_dssp HHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHH
T ss_pred HhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhc
Confidence 4445556666666655554444 67777888888888887765 44 6777788888888888877 45666667
Q ss_pred cCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccCCC-ccccCCCCCCEEecCCCccccCCCCC-----c
Q 035512 269 VSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIP-NTLGNLRNLERLNLGDNYLTSSTPEL-----S 342 (372)
Q Consensus 269 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~-----~ 342 (372)
+++|++|++++|++. .++ .+..+++|+.|++++|.+++..+ ..+..+++|++|++++|++.+..+.. .
T Consensus 92 ~~~L~~L~L~~N~l~----~l~--~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~ 165 (198)
T 1ds9_A 92 ADTLEELWISYNQIA----SLS--GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEY 165 (198)
T ss_dssp HHHCSEEEEEEEECC----CHH--HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHH
T ss_pred CCcCCEEECcCCcCC----cCC--ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHH
Confidence 788888888888873 233 35567778888888888875332 46778899999999999887654320 0
Q ss_pred ccccccCCCCCcEEeCcCCcccc
Q 035512 343 FLSSLSNFKSLTHIVLSNNPLDG 365 (372)
Q Consensus 343 ~~~~l~~~~~L~~L~l~~~~l~~ 365 (372)
....+..+++|+.|| +++++.
T Consensus 166 ~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 166 RIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHHHHHHCSSCSEEC--CGGGTT
T ss_pred HHHHHHhCCCcEEEC--CcccCH
Confidence 011266788999887 666654
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=5.6e-12 Score=100.46 Aligned_cols=109 Identities=22% Similarity=0.296 Sum_probs=84.3
Q ss_pred CCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccccccc
Q 035512 224 LELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLW 303 (372)
Q Consensus 224 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l 303 (372)
.+.++++++.+.. +|..+ .++|++|++++|.+++..+..|.++++|++|++++|++ ..++...|..+++|+.|
T Consensus 11 ~~~l~~s~n~l~~-ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l----~~l~~~~f~~l~~L~~L 83 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQL----TVLPAGVFDKLTQLTQL 83 (170)
T ss_dssp TTEEECTTSCCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCC----CCCCTTTTTTCTTCCEE
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCc----CccChhhccCCCCCCEE
Confidence 4678888888765 44444 26888889988888877778888888888888888887 55666667777788888
Q ss_pred ccCCCccccCCCccccCCCCCCEEecCCCccccCCC
Q 035512 304 DLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSSTP 339 (372)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~ 339 (372)
++++|++++..+..+..+++|+.|+|++|++....+
T Consensus 84 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 84 SLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred ECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 888888887666678888888888888888765544
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=5.1e-12 Score=100.70 Aligned_cols=104 Identities=25% Similarity=0.300 Sum_probs=70.6
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (372)
+.++++++.++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 46777777776 455444 267788888888877666667777777777777777777555555667777777777777
Q ss_pred ccccccChhhhcCCCCccEEEccCCccC
Q 035512 136 TLSGEIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
.+. .++...+..+++|+.|++++|.+.
T Consensus 89 ~l~-~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 89 QLK-SIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCC-CCCTTTTTTCTTCCEEECCSSCBC
T ss_pred ccC-EeCHHHhcCCCCCCEEEeCCCCCC
Confidence 766 555554555666666666666554
No 144
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.35 E-value=9.6e-15 Score=119.81 Aligned_cols=109 Identities=21% Similarity=0.221 Sum_probs=49.9
Q ss_pred hhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCC
Q 035512 96 AIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTY 175 (372)
Q Consensus 96 ~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~ 175 (372)
.+..+++|++|++++|.++. .+ .+..+++|++|++++|.+. .+|.... .+++|+.|++++|.+.+. + .+..+++
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~-~~~~L~~L~L~~N~l~~l-~-~~~~l~~ 116 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA-VADTLEELWISYNQIASL-S-GIEKLVN 116 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH-HHHHCSEEEEEEEECCCH-H-HHHHHHH
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh-cCCcCCEEECcCCcCCcC-C-ccccCCC
Confidence 45555555555555555543 23 4445555555555555554 3443222 344455555555544431 1 2334444
Q ss_pred CcEEEeecccCccccC-cchhCCCCCCeeeccCCcc
Q 035512 176 LRILSLAYNDFSGAIP-REIGNLTKLKGLYLGANRL 210 (372)
Q Consensus 176 L~~L~l~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~ 210 (372)
|++|++++|.+..... ..+..+++|+.|++++|.+
T Consensus 117 L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l 152 (198)
T 1ds9_A 117 LRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPL 152 (198)
T ss_dssp SSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHH
T ss_pred CCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCcc
Confidence 4455554444432111 2334444444444444444
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.33 E-value=1.2e-11 Score=98.88 Aligned_cols=104 Identities=23% Similarity=0.320 Sum_probs=72.0
Q ss_pred EEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCC
Q 035512 56 TVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFN 135 (372)
Q Consensus 56 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~ 135 (372)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56788888886 5555443 67888888888887666777777777888888777777555555667777777777777
Q ss_pred ccccccChhhhcCCCCccEEEccCCccC
Q 035512 136 TLSGEIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 136 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
.+. .++...+..+++|+.|++++|.+.
T Consensus 92 ~l~-~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLK-SIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCC-CCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccc-eeCHHHhccccCCCEEEeCCCCcc
Confidence 776 555554556666666666666554
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.31 E-value=1.7e-11 Score=97.92 Aligned_cols=104 Identities=26% Similarity=0.316 Sum_probs=84.1
Q ss_pred CEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccC
Q 035512 80 QSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQE 159 (372)
Q Consensus 80 ~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~ 159 (372)
+.++++++.++ .+|..+. ++|++|++++|.+++..+..|..+++|++|++++|.+. .++...+..+++|+.|++++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLT-AIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCC-ccChhHhCCcchhhEEECCC
Confidence 68899998886 6666553 78899999999988777888888899999999999888 67777766788888888888
Q ss_pred CccCccCCccCcCCCCCcEEEeecccCc
Q 035512 160 NMFHGAIPSNLSNCTYLRILSLAYNDFS 187 (372)
Q Consensus 160 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 187 (372)
|.+.+..+..+..+++|++|++++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 8887665556778888888888887765
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.29 E-value=8.7e-14 Score=125.13 Aligned_cols=136 Identities=18% Similarity=0.148 Sum_probs=63.0
Q ss_pred CCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCCccC-----cCCCCCcEEEeecccCccc----cCcchh
Q 035512 125 SSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNL-----SNCTYLRILSLAYNDFSGA----IPREIG 195 (372)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~----~~~~~~ 195 (372)
++|++|++++|.+.+.....++..+++|+.|++++|.+.......+ ...+.|++|++++|.++.. +...+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 3455555555544432223333334445555555555432211111 1234555555555555432 122234
Q ss_pred CCCCCCeeeccCCccccc----cCccccCCCCCCEEEccCCcccccC----cccccCCCCCCEEEccCCcccc
Q 035512 196 NLTKLKGLYLGANRLQGE----IPREFGNLAVLELMSLAGNNLQEKI----PPEIGNLRNLEELNLGDNKLVG 260 (372)
Q Consensus 196 ~~~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 260 (372)
.+++|++|++++|.+.+. +...+..++.|++|++++|.++... ...+...++|++|++++|.++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 455566666666555432 1233444555666666666554322 2223344556666666666543
No 148
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.28 E-value=9.7e-10 Score=99.34 Aligned_cols=262 Identities=12% Similarity=0.122 Sum_probs=128.2
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
.+++.+.+.. .++.+...+|..|.+|+.+.|..+ ++.....+|.++ .|+.+.+..+ ++......|..+ +|+.+.+
T Consensus 46 ~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~l 120 (379)
T 4h09_A 46 DRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEF 120 (379)
T ss_dssp GGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEEC
T ss_pred cCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccC
Confidence 3677777764 366566778999999999999654 554455677776 5777766543 333334445443 7888888
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCccCCccCcCCCCCcEEEeecccCccc------------cCcchhCCCCC
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHGAIPSNLSNCTYLRILSLAYNDFSGA------------IPREIGNLTKL 200 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~------------~~~~~~~~~~L 200 (372)
..+- . .+....|..+ +++.+.+..+ +.......+..+..++...+........ ....+.....+
T Consensus 121 p~~~-~-~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (379)
T 4h09_A 121 PGAT-T-EIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTG 196 (379)
T ss_dssp CTTC-C-EECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCC
T ss_pred CCcc-c-cccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccceecccccceeccccccccc
Confidence 7542 2 4444455333 4555555432 2223334455566666655543221100 01112222233
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
..+.+..... ......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.+...+|.++.+|+.+.+..+
T Consensus 197 ~~~~~~~~~~-~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~ 273 (379)
T 4h09_A 197 TEFTIPSTVK-TVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK 273 (379)
T ss_dssp SEEECCTTCC-EECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC
T ss_pred ccccccccee-EEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc
Confidence 3333322211 112223334445555554332 22233344445555555555443 33233444555555555555332
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCC
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGD 331 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 331 (372)
+ ..++...|..+..|+.+.+.++.++.....+|.+|.+|+.+.|..
T Consensus 274 -i----~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~ 319 (379)
T 4h09_A 274 -V----KTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPT 319 (379)
T ss_dssp -C----SEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCT
T ss_pred -c----eeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCc
Confidence 1 223333444455555555554444433444555555555555543
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=4.3e-14 Score=127.14 Aligned_cols=191 Identities=16% Similarity=0.130 Sum_probs=123.5
Q ss_pred CCCCcEEEeecccCccccCcchh-----CCCCCCeeeccCCccccccCccc-cCCCCCCEEEccCCcccccCcccc----
Q 035512 173 CTYLRILSLAYNDFSGAIPREIG-----NLTKLKGLYLGANRLQGEIPREF-GNLAVLELMSLAGNNLQEKIPPEI---- 242 (372)
Q Consensus 173 l~~L~~L~l~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l---- 242 (372)
++.|++|++++|.++......+. ..++|+.|++++|.+.......+ ..+++|+.|++++|.+.......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 46789999999988754433333 23689999999998864332222 345688999999998876544443
Q ss_pred -cCCCCCCEEEccCCccccc----cCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccC----
Q 035512 243 -GNLRNLEELNLGDNKLVGT----IPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF---- 313 (372)
Q Consensus 243 -~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~---- 313 (372)
...++|++|++++|.++.. ++..+..+++|++|++++|.+.+.....-...+....+|+.|++++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999998643 3445577899999999999885432111122344556788889999988753
Q ss_pred CCccccCCCCCCEEecCCCccccCCCCCcccccccCCC--CCcEEe--CcCCcccc
Q 035512 314 IPNTLGNLRNLERLNLGDNYLTSSTPELSFLSSLSNFK--SLTHIV--LSNNPLDG 365 (372)
Q Consensus 314 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~--~L~~L~--l~~~~l~~ 365 (372)
+..++..+++|++|+|++|.++...... + ..+.... .|+.+. +.++.++.
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~-L-~~~~~~~~~~L~~l~~ll~~~~~~~ 284 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQV-L-RDLGGAAEGGARVVVSLTEGTAVSE 284 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHH-H-HHCC------CEEECCCC----CHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHH-H-HHHhcCCCccchhhHhhhcCCccCH
Confidence 3334556788999999999886554331 1 1122222 277776 66666543
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.08 E-value=2.8e-08 Score=89.70 Aligned_cols=263 Identities=11% Similarity=0.048 Sum_probs=162.0
Q ss_pred CcEEEEEeCCCCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEc
Q 035512 53 HRVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDF 132 (372)
Q Consensus 53 ~~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 132 (372)
.+++.+.+..+ ++.....+|..+ +|+.+.+..+ ++.....+|..+ +|+.+.+..+ ++......|..+ +++.+.+
T Consensus 69 ~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~~-~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~ 142 (379)
T 4h09_A 69 YNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQGT-DLDDFEFPGA-TTEIGNYIFYNS-SVKRIVI 142 (379)
T ss_dssp TTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEEE
T ss_pred CCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceeccC-CcccccCCCc-cccccccccccc-eeeeeec
Confidence 57888888754 665666788887 6888877643 332334455554 7999998754 332333344444 5666665
Q ss_pred cCCccccccChhhhcCCCCccEEEccCCccCc------------cCCccCcCCCCCcEEEeecccCccccCcchhCCCCC
Q 035512 133 TFNTLSGEIPANICSNLPFLEILSLQENMFHG------------AIPSNLSNCTYLRILSLAYNDFSGAIPREIGNLTKL 200 (372)
Q Consensus 133 ~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~------------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 200 (372)
..+ +. .+....+..+..++.+.+....... .....+.....+..+.+..... ......+..+.++
T Consensus 143 ~~~-v~-~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~f~~~~~l 219 (379)
T 4h09_A 143 PKS-VT-TIKDGIGYKAENLEKIEVSSNNKNYVAENYVLYNKNKTILESYPAAKTGTEFTIPSTVK-TVTAYGFSYGKNL 219 (379)
T ss_dssp CTT-CC-EECSCTTTTCTTCCEEEECTTCSSEEEETTEEEETTSSEEEECCTTCCCSEEECCTTCC-EECTTTTTTCSSC
T ss_pred cce-ee-ccccchhcccccccccccccccceeecccceecccccceecccccccccccccccccee-EEeeccccccccc
Confidence 543 22 4445555677778777765432210 1112233344555555443322 2334455666777
Q ss_pred CeeeccCCccccccCccccCCCCCCEEEccCCcccccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccCC
Q 035512 201 KGLYLGANRLQGEIPREFGNLAVLELMSLAGNNLQEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 201 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
+.+.+..+ +.......+.++..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +......+|.+|++|+++.+.++
T Consensus 220 ~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~ 296 (379)
T 4h09_A 220 KKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNS 296 (379)
T ss_dssp SEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCT
T ss_pred ceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceecccccccccccccccccccc
Confidence 77777544 22344456677788888888664 55556667777888888887654 44455567788888888888776
Q ss_pred ccccccCCCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCC
Q 035512 281 SLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDN 332 (372)
Q Consensus 281 ~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n 332 (372)
.+ ..+....|.++..|+.+.+..+ ++.....+|.+|++|+.+.+..+
T Consensus 297 ~i----~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~ 343 (379)
T 4h09_A 297 AI----ETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS 343 (379)
T ss_dssp TC----CEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred cc----ceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence 65 4456667777777877777644 44445567888888888887654
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.07 E-value=4.8e-10 Score=100.08 Aligned_cols=101 Identities=19% Similarity=0.221 Sum_probs=84.3
Q ss_pred EeCCC-CccccccccccCCCCCCEEECCC-CcCCCCCChhhhCCCCCCEEEcccccccCCCCccccCCCCCCEEEccCCc
Q 035512 59 NISGL-NLTGTIPSQLGNLSSLQSLNLSF-NRLSGSIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKSSLQHLDFTFNT 136 (372)
Q Consensus 59 ~l~~~-~l~~~~~~~~~~l~~L~~L~l~~-~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 136 (372)
+++++ .++ .+|. +..+++|++|+|++ |.+++..+..|..+++|++|+|++|.+++..+..|..+++|++|+|++|.
T Consensus 14 ~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 91 (347)
T 2ifg_A 14 RCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91 (347)
T ss_dssp ECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSC
T ss_pred EcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCc
Confidence 44555 676 4677 88999999999996 99986666788999999999999999998888888999999999999999
Q ss_pred cccccChhhhcCCCCccEEEccCCccC
Q 035512 137 LSGEIPANICSNLPFLEILSLQENMFH 163 (372)
Q Consensus 137 ~~~~~~~~~~~~l~~L~~L~l~~~~~~ 163 (372)
+. .+|...+..++ |+.|++.+|.+.
T Consensus 92 l~-~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 92 LE-SLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CS-CCCSTTTCSCC-CCEEECCSSCCC
T ss_pred cc-eeCHHHcccCC-ceEEEeeCCCcc
Confidence 98 77777775555 999999888775
No 152
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.04 E-value=5.4e-10 Score=99.75 Aligned_cols=105 Identities=19% Similarity=0.194 Sum_probs=77.0
Q ss_pred EEEccCC-cccccCcccccCCCCCCEEEccC-CccccccCccccCcCCCCEEeccCCccccccCCCCCcCcCcccccccc
Q 035512 226 LMSLAGN-NLQEKIPPEIGNLRNLEELNLGD-NKLVGTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLW 303 (372)
Q Consensus 226 ~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l 303 (372)
.++++++ .++. +|. +..+++|++|+|++ |.+.+..+..|.++++|+.|+|++|.+ ..++...|.++.+|+.|
T Consensus 12 ~v~~~~~n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l----~~~~~~~~~~l~~L~~L 85 (347)
T 2ifg_A 12 GLRCTRDGALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL----RFVAPDAFHFTPRLSRL 85 (347)
T ss_dssp CEECCSSCCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCC----CEECTTGGGSCSCCCEE
T ss_pred EEEcCCCCCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCcc----ceeCHHHhcCCcCCCEE
Confidence 4577776 6654 555 78888888888886 888766667788888888888888887 34455566677777777
Q ss_pred ccCCCccccCCCccccCCCCCCEEecCCCccccC
Q 035512 304 DLENNSFSGFIPNTLGNLRNLERLNLGDNYLTSS 337 (372)
Q Consensus 304 ~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 337 (372)
+|++|++++..+..+..++ |+.|+|.+|++...
T Consensus 86 ~l~~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~ 118 (347)
T 2ifg_A 86 NLSFNALESLSWKTVQGLS-LQELVLSGNPLHCS 118 (347)
T ss_dssp ECCSSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred eCCCCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence 8888888766555665555 88888888876543
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.90 E-value=3.1e-10 Score=101.23 Aligned_cols=183 Identities=17% Similarity=0.173 Sum_probs=93.8
Q ss_pred CCccEEEccCCccCc-c-------CCccCcCCCCCcEEEeecccCc---------cccCcchhCCCCCCeeeccCCcccc
Q 035512 150 PFLEILSLQENMFHG-A-------IPSNLSNCTYLRILSLAYNDFS---------GAIPREIGNLTKLKGLYLGANRLQG 212 (372)
Q Consensus 150 ~~L~~L~l~~~~~~~-~-------~~~~l~~l~~L~~L~l~~~~~~---------~~~~~~~~~~~~L~~L~l~~~~~~~ 212 (372)
..++.|.+......+ . +..+...+++|+.|.+...... ..+...+..+|+|+.|.++++.-.
T Consensus 107 ~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l- 185 (362)
T 2ra8_A 107 PSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL- 185 (362)
T ss_dssp GGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-
T ss_pred hhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-
Confidence 346777776544321 1 1122345678888877553221 012234456677788877766311
Q ss_pred ccCccccCCCCCCEEEccCCcccccCccccc--CCCCCCEEEccCC--ccccc-----cCccc--cCcCCCCEEeccCCc
Q 035512 213 EIPREFGNLAVLELMSLAGNNLQEKIPPEIG--NLRNLEELNLGDN--KLVGT-----IPTAI--FNVSKLKALKLYSNS 281 (372)
Q Consensus 213 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--~~~~L~~L~l~~~--~~~~~-----~~~~~--~~~~~L~~L~l~~~~ 281 (372)
.++. + ..++|+.|++..|.+.......+. .+|+|++|+|+.+ ...+. +...+ ..+|+|+.|++.+|.
T Consensus 186 ~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~ 263 (362)
T 2ra8_A 186 SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE 263 (362)
T ss_dssp BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT
T ss_pred eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC
Confidence 1222 2 266777777777666443323332 5677777776421 11100 01112 246777777777776
Q ss_pred cccccCCCCCcCcCccccccccccCCCccccC----CCccccCCCCCCEEecCCCcccc
Q 035512 282 LLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGDNYLTS 336 (372)
Q Consensus 282 ~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~n~~~~ 336 (372)
+.+.....-. ..+.+++|+.|+++.|.+.+. ++..+..+++|+.|++++|.++.
T Consensus 264 i~~~~~~~la-~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 264 EQNVVVEMFL-ESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSD 321 (362)
T ss_dssp THHHHHHHHH-HCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCH
T ss_pred CchHHHHHHH-hCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCH
Confidence 6432210000 012345556667777766543 22233456777777777776543
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.85 E-value=4.3e-09 Score=93.82 Aligned_cols=206 Identities=15% Similarity=0.177 Sum_probs=97.1
Q ss_pred CCcEEEEEeCCCCccc-c-------ccccccCCCCCCEEECCCCcCC---------CCCChhhhCCCCCCEEEccccccc
Q 035512 52 RHRVTVLNISGLNLTG-T-------IPSQLGNLSSLQSLNLSFNRLS---------GSIPSAIFTTYTLKYVNLRQNQLS 114 (372)
Q Consensus 52 ~~~l~~l~l~~~~l~~-~-------~~~~~~~l~~L~~L~l~~~~~~---------~~~~~~~~~l~~L~~L~l~~~~~~ 114 (372)
..+++.|.+......+ . +......+++|+.|.+...... +.+...+..+++|+.|.++++.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 4456667666544331 1 1223445677888877554221 012234455666777776655211
Q ss_pred CCCCccccCCCCCCEEEccCCccccccChhhh-cCCCCccEEEccCC--ccCccCCccCcCCCCCcEEEeecccCccccC
Q 035512 115 GALPSFIFNKSSLQHLDFTFNTLSGEIPANIC-SNLPFLEILSLQEN--MFHGAIPSNLSNCTYLRILSLAYNDFSGAIP 191 (372)
Q Consensus 115 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~-~~l~~L~~L~l~~~--~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 191 (372)
..+. + .+++|++|++..+.+.......+. ..+|+|+.|+++.+ ...+.. . +. .+.
T Consensus 186 -~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~--~----------------~~-~l~ 243 (362)
T 2ra8_A 186 -SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG--D----------------MN-VFR 243 (362)
T ss_dssp -BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS--C----------------GG-GTG
T ss_pred -eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccch--h----------------HH-HHH
Confidence 1111 2 255666666665555432222222 13566666655321 100000 0 00 000
Q ss_pred cch--hCCCCCCeeeccCCccccccCccc---cCCCCCCEEEccCCcccccCc----ccccCCCCCCEEEccCCcccccc
Q 035512 192 REI--GNLTKLKGLYLGANRLQGEIPREF---GNLAVLELMSLAGNNLQEKIP----PEIGNLRNLEELNLGDNKLVGTI 262 (372)
Q Consensus 192 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l---~~~~~L~~L~l~~~~~~~~~~----~~l~~~~~L~~L~l~~~~~~~~~ 262 (372)
..+ ..+++|+.|.+.+|.+.+..+..+ ..++.|++|+++.|.+.+... ..+..+++|+.|++++|.++...
T Consensus 244 ~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~ 323 (362)
T 2ra8_A 244 PLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEM 323 (362)
T ss_dssp GGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHH
T ss_pred HHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHH
Confidence 011 234556666666555543221112 135667777777776655322 22334577788888777765443
Q ss_pred CccccC-cCCCCEEeccCCc
Q 035512 263 PTAIFN-VSKLKALKLYSNS 281 (372)
Q Consensus 263 ~~~~~~-~~~L~~L~l~~~~ 281 (372)
...+.. + ...+++++++
T Consensus 324 ~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 324 KKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHc--CCEEEecCCc
Confidence 333332 2 3456776655
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.61 E-value=9.1e-10 Score=88.78 Aligned_cols=123 Identities=15% Similarity=0.087 Sum_probs=60.2
Q ss_pred cccCCCCCCEEEccCC-ccccc----CcccccCCCCCCEEEccCCccccc----cCccccCcCCCCEEeccCCccccccC
Q 035512 217 EFGNLAVLELMSLAGN-NLQEK----IPPEIGNLRNLEELNLGDNKLVGT----IPTAIFNVSKLKALKLYSNSLLGSLS 287 (372)
Q Consensus 217 ~l~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~~~ 287 (372)
.+...+.|++|++++| .+... +...+...++|++|++++|.+... +...+...++|++|++++|.+.+...
T Consensus 31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~ 110 (185)
T 1io0_A 31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI 110 (185)
T ss_dssp HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence 4445566666666666 55432 223334455566666666655422 12233334455555555555432211
Q ss_pred CCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEec--CCCccccCCCCCcccccccCCCCCcEEeCcCCccc
Q 035512 288 SIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNL--GDNYLTSSTPELSFLSSLSNFKSLTHIVLSNNPLD 364 (372)
Q Consensus 288 ~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l--~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~l~ 364 (372)
. .+..++...++|++|+| ++|.+...... .+...+...++|++|++++|.+.
T Consensus 111 ~------------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~-~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 111 L------------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEM-EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp H------------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHH-HHHHHHHHCSSCCEEECCCSSHH
T ss_pred H------------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHH-HHHHHHHhCCCcCEEeccCCCCC
Confidence 0 12233445566666666 55665443221 11123445566777777777654
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.49 E-value=8.1e-09 Score=83.16 Aligned_cols=95 Identities=17% Similarity=0.218 Sum_probs=72.4
Q ss_pred cCcchhCCCCCCeeeccCC-ccccc----cCccccCCCCCCEEEccCCcccccC----cccccCCCCCCEEEccCCcccc
Q 035512 190 IPREIGNLTKLKGLYLGAN-RLQGE----IPREFGNLAVLELMSLAGNNLQEKI----PPEIGNLRNLEELNLGDNKLVG 260 (372)
Q Consensus 190 ~~~~~~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~l~~~~~L~~L~l~~~~~~~ 260 (372)
+...+...+.|++|++++| .+... +...+...+.|++|++++|.+.+.. ...+...+.|++|++++|.+.+
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 3455677899999999999 87642 3455667899999999999987643 3445566899999999999864
Q ss_pred c----cCccccCcCCCCEEec--cCCcccc
Q 035512 261 T----IPTAIFNVSKLKALKL--YSNSLLG 284 (372)
Q Consensus 261 ~----~~~~~~~~~~L~~L~l--~~~~~~~ 284 (372)
. +...+...++|++|++ ++|.+.+
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~ 137 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGN 137 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCH
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCH
Confidence 3 3456677788899988 7777743
No 157
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.44 E-value=5.4e-08 Score=76.50 Aligned_cols=83 Identities=5% Similarity=0.012 Sum_probs=58.7
Q ss_pred cEEEEEeCCCCccccccccccCCCCCCEEECCCCc-CCCCCChhhhCC----CCCCEEEccccc-ccCCCCccccCCCCC
Q 035512 54 RVTVLNISGLNLTGTIPSQLGNLSSLQSLNLSFNR-LSGSIPSAIFTT----YTLKYVNLRQNQ-LSGALPSFIFNKSSL 127 (372)
Q Consensus 54 ~l~~l~l~~~~l~~~~~~~~~~l~~L~~L~l~~~~-~~~~~~~~~~~l----~~L~~L~l~~~~-~~~~~~~~l~~l~~L 127 (372)
+++.|++++|.+++.....+..+++|++|+|++|. +++.....+..+ ++|++|++++|. +++.....+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 68888888888876666667788888888888874 665555556554 367888887774 665444556667777
Q ss_pred CEEEccCCc
Q 035512 128 QHLDFTFNT 136 (372)
Q Consensus 128 ~~L~l~~~~ 136 (372)
++|++++|.
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 777777765
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.22 E-value=5.9e-07 Score=70.58 Aligned_cols=34 Identities=18% Similarity=0.107 Sum_probs=15.2
Q ss_pred CCCEEEccCCc-cccccCccccCcCCCCEEeccCC
Q 035512 247 NLEELNLGDNK-LVGTIPTAIFNVSKLKALKLYSN 280 (372)
Q Consensus 247 ~L~~L~l~~~~-~~~~~~~~~~~~~~L~~L~l~~~ 280 (372)
+|++|++++|. +++.....+.++++|++|++++|
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 34444444442 33332233444455555555554
No 159
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.18 E-value=2.4e-06 Score=72.29 Aligned_cols=83 Identities=23% Similarity=0.163 Sum_probs=52.7
Q ss_pred hCCCCCCEEEcccccccC--CCCccccCCCCCCEEEccCCccccccChhhhcCCCCccEEEccCCccCccCC-------c
Q 035512 98 FTTYTLKYVNLRQNQLSG--ALPSFIFNKSSLQHLDFTFNTLSGEIPANICSNLPFLEILSLQENMFHGAIP-------S 168 (372)
Q Consensus 98 ~~l~~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~-------~ 168 (372)
.++++|+.|+|++|.+++ .++..+..+++|+.|++++|.+.+.-.-..+..+ +|++|++.+|.+.+..+ .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCccccCcchhHHHH
Confidence 357788888888887775 2344555778888888888877632111112223 78888888887765333 2
Q ss_pred cCcCCCCCcEEEe
Q 035512 169 NLSNCTYLRILSL 181 (372)
Q Consensus 169 ~l~~l~~L~~L~l 181 (372)
.+..+++|+.||-
T Consensus 246 il~~~P~L~~LDg 258 (267)
T 3rw6_A 246 IRERFPKLLRLDG 258 (267)
T ss_dssp HHHHCTTCCEESS
T ss_pred HHHHCcccCeECC
Confidence 3556777777753
No 160
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=8.3e-06 Score=68.97 Aligned_cols=98 Identities=27% Similarity=0.235 Sum_probs=70.4
Q ss_pred EEeCCCCcc---ccccccccCCCCCCEEECCCCcCCC--CCChhhhCCCCCCEEEcccccccCCCCccccCCC--CCCEE
Q 035512 58 LNISGLNLT---GTIPSQLGNLSSLQSLNLSFNRLSG--SIPSAIFTTYTLKYVNLRQNQLSGALPSFIFNKS--SLQHL 130 (372)
Q Consensus 58 l~l~~~~l~---~~~~~~~~~l~~L~~L~l~~~~~~~--~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~l~--~L~~L 130 (372)
++++.|... ..+......+++|+.|+|++|.+.+ .++..+..+++|+.|+|++|.+.+. ..+..+. +|++|
T Consensus 148 l~l~~N~~~~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L 225 (267)
T 3rw6_A 148 IDVVLNRRSCMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEEL 225 (267)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEE
T ss_pred ccccCCHHHHHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceE
Confidence 555666432 1222223568899999999999986 3456677899999999999998854 2333333 89999
Q ss_pred EccCCccccccCh------hhhcCCCCccEEEc
Q 035512 131 DFTFNTLSGEIPA------NICSNLPFLEILSL 157 (372)
Q Consensus 131 ~l~~~~~~~~~~~------~~~~~l~~L~~L~l 157 (372)
++++|.+.+.++. .+...+++|+.|+-
T Consensus 226 ~L~~Npl~~~~~~~~~y~~~il~~~P~L~~LDg 258 (267)
T 3rw6_A 226 WLDGNSLCDTFRDQSTYISAIRERFPKLLRLDG 258 (267)
T ss_dssp ECTTSTTGGGCSSHHHHHHHHHHHCTTCCEESS
T ss_pred EccCCcCccccCcchhHHHHHHHHCcccCeECC
Confidence 9999999865552 34567999999874
No 161
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.69 E-value=3.5e-06 Score=67.44 Aligned_cols=64 Identities=16% Similarity=0.210 Sum_probs=29.3
Q ss_pred cCCCCCCEEEccCC-ccccc----CcccccCCCCCCEEEccCCcccccc----CccccCcCCCCEEeccCCcc
Q 035512 219 GNLAVLELMSLAGN-NLQEK----IPPEIGNLRNLEELNLGDNKLVGTI----PTAIFNVSKLKALKLYSNSL 282 (372)
Q Consensus 219 ~~~~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~ 282 (372)
.+.+.|++|+++++ .+.+. +.+.+...+.|++|+|++|.+.+.. ...+.....|++|+|++|.+
T Consensus 38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I 110 (197)
T 1pgv_A 38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL 110 (197)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence 44455666666553 44321 2233344455555555555554221 12222334455555555544
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.38 E-value=1.7e-05 Score=63.53 Aligned_cols=66 Identities=9% Similarity=0.036 Sum_probs=27.6
Q ss_pred ccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccccC----CCccccCCCCCCEEecCC
Q 035512 266 IFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFSGF----IPNTLGNLRNLERLNLGD 331 (372)
Q Consensus 266 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~----~~~~~~~~~~L~~L~l~~ 331 (372)
+.....|+.|+|++|.+.+.....-...+..-++|+.|+|+.|.+.+. +.+++...+.|++|+|++
T Consensus 66 L~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n 135 (197)
T 1pgv_A 66 ACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADN 135 (197)
T ss_dssp HTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCC
T ss_pred HhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCC
Confidence 334445555555555544333222222222333444445555554422 222333444455555543
No 163
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.60 E-value=0.0043 Score=46.10 Aligned_cols=55 Identities=22% Similarity=0.231 Sum_probs=33.4
Q ss_pred EEeccCCccccccC--CCCCcCcCccccccccccCCCccccCCCccccCCCCCCEEecCCCccc
Q 035512 274 ALKLYSNSLLGSLS--SIPDFRLPNLEVLLLWDLENNSFSGFIPNTLGNLRNLERLNLGDNYLT 335 (372)
Q Consensus 274 ~L~l~~~~~~~~~~--~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~ 335 (372)
.++.+++.+ . .+|....++ ++.|+|++|+++...+..|..+++|+.|+|.+|++.
T Consensus 12 ~v~Cs~~~L----~~~~vP~~lp~~---l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 12 LVDCGRRGL----TWASLPTAFPVD---TTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp EEECCSSCC----CTTTSCSCCCTT---CSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred EEEeCCCCC----ccccCCCCCCcC---CCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 566666655 3 344322223 344477777777665666777777777777777654
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.91 E-value=0.014 Score=43.28 Aligned_cols=57 Identities=26% Similarity=0.333 Sum_probs=43.3
Q ss_pred CEEEccCCccc-cccCccccCcCCCCEEeccCCccccccCCCCCcCcCccccccccccCCCccc
Q 035512 249 EELNLGDNKLV-GTIPTAIFNVSKLKALKLYSNSLLGSLSSIPDFRLPNLEVLLLWDLENNSFS 311 (372)
Q Consensus 249 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~ 311 (372)
..++.+++.++ ..+|..+ -++|+.|+|++|.+ ..++...|..+.+|+.|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l----~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNL----TALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCC----SSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcC----CccChhhhhhccccCEEEecCCCee
Confidence 46788888775 2445432 24799999999998 7778888888888888899998764
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=81.86 E-value=1.7 Score=30.07 Aligned_cols=44 Identities=11% Similarity=-0.001 Sum_probs=22.5
Q ss_pred cccCcccccCCCCCCEEEccCCccccccCccccCcCCCCEEeccC
Q 035512 235 QEKIPPEIGNLRNLEELNLGDNKLVGTIPTAIFNVSKLKALKLYS 279 (372)
Q Consensus 235 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~ 279 (372)
+.+...+|.+|.+|+++.+..+ ++.+...+|.+|.+|+.+.+.+
T Consensus 9 t~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 9 VGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred CEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 3334445555555555555443 2334445555666666655544
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=74.82 E-value=10 Score=26.13 Aligned_cols=48 Identities=10% Similarity=0.048 Sum_probs=28.7
Q ss_pred CCccccccccccCCCCCCEEECCCCcCCCCCChhhhCCCCCCEEEcccc
Q 035512 63 LNLTGTIPSQLGNLSSLQSLNLSFNRLSGSIPSAIFTTYTLKYVNLRQN 111 (372)
Q Consensus 63 ~~l~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 111 (372)
..++.+....|..|.+|+.+.|..+ ++.....+|..|.+|+.+.+.+.
T Consensus 6 ~~vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 6 EPVVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCCCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CccCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 3455455566777777777777654 22234556666777776666543
Done!