BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035513
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XRJ|A Chain A, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
pdb|1XRJ|B Chain B, Rapid Structure Determination Of Human Uridine-Cytidine
Kinase 2 Using A Conventional Laboratory X-Ray Source
And A Single Samarium Derivative
Length = 261
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/207 (57%), Positives = 153/207 (73%), Gaps = 9/207 (4%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRL-------RDQRVVLVNQDSFYHSLTDE-KLQNLH 82
+PF+IGV+GGTASGK++VC I+ L R ++VV+++QDSFY LT E K + L
Sbjct: 19 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 78
Query: 83 -DYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL 141
+NFDHPDAFD EL+L ++++ G+ V IP YDF SH RK+++ + P+DV + EGIL
Sbjct: 79 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL 138
Query: 142 VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFIL 201
+ VRDL MK+FVDTD+D RLSRR+ RD ERGRD+E +L QY FVKP+FEEF L
Sbjct: 139 AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCL 198
Query: 202 PSKKYADIIIPRGGDNDVAIDLIVQHI 228
P+KKYAD+IIPRG DN VAI+LIVQHI
Sbjct: 199 PTKKYADVIIPRGADNLVAINLIVQHI 225
>pdb|1UDW|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UDW|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With A Feedback-inhibitor, Ctp
pdb|1UEI|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEI|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Feedback-Inhibitor, Utp
pdb|1UEJ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UEJ|B Chain B, Crystal Structure Of Human Uridine-Cytidine Kinase 2
Complexed With A Substrate, Cytidine
pdb|1UFQ|A Chain A, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|B Chain B, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|C Chain C, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UFQ|D Chain D, Crystal Structure Of Ligand-Free Human Uridine-Cytidine
Kinase 2
pdb|1UJ2|A Chain A, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
pdb|1UJ2|B Chain B, Crystal Structure Of Human Uridine-cytidine Kinase 2
Complexed With Products, Cmp And Adp
Length = 252
Score = 241 bits (616), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 118/207 (57%), Positives = 153/207 (73%), Gaps = 9/207 (4%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRL-------RDQRVVLVNQDSFYHSLTDE-KLQNLH 82
+PF+IGV+GGTASGK++VC I+ L R ++VV+++QDSFY LT E K + L
Sbjct: 21 EPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALK 80
Query: 83 -DYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL 141
+NFDHPDAFD EL+L ++++ G+ V IP YDF SH RK+++ + P+DV + EGIL
Sbjct: 81 GQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGIL 140
Query: 142 VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFIL 201
+ VRDL MK+FVDTD+D RLSRR+ RD ERGRD+E +L QY FVKP+FEEF L
Sbjct: 141 AFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEEFCL 200
Query: 202 PSKKYADIIIPRGGDNDVAIDLIVQHI 228
P+KKYAD+IIPRG DN VAI+LIVQHI
Sbjct: 201 PTKKYADVIIPRGADNLVAINLIVQHI 227
>pdb|2JEO|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1
pdb|2UVQ|A Chain A, Crystal Structure Of Human Uridine-Cytidine Kinase 1 In
Complex With Adp
Length = 245
Score = 231 bits (588), Expect = 9e-61, Method: Compositional matrix adjust.
Identities = 117/230 (50%), Positives = 162/230 (70%), Gaps = 11/230 (4%)
Query: 21 SSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL-------RDQRVVLVNQDSFYHSL 73
+E+ + +PF+IGV+GGTASGK+TVC I+ L R ++VV+++QD FY L
Sbjct: 14 GTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVL 73
Query: 74 T-DEKLQNLH-DYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINP 131
T ++K + L YNFDHPDAFD +L+ ++ + G+ V +P YDF +H R ++ ++ P
Sbjct: 74 TAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYP 133
Query: 132 SDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARF 191
+DV + EGILV + +RD+ +++FVDTDSDVRLSRR+ RD V RGRD+E +L QY F
Sbjct: 134 ADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYTTF 192
Query: 192 VKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIY 241
VKP+FEEF LP+KKYAD+IIPRG DN VAI+LIVQHI L D+CK +
Sbjct: 193 VKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILN-GDICKWH 241
>pdb|1BD3|D Chain D, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|C Chain C, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|B Chain B, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD3|A Chain A, Structure Of The Apo Uracil Phosphoribosyltransferase, 2
Mutant C128v
pdb|1BD4|D Chain D, Uprt-Uracil Complex
pdb|1BD4|C Chain C, Uprt-Uracil Complex
pdb|1BD4|B Chain B, Uprt-Uracil Complex
pdb|1BD4|A Chain A, Uprt-Uracil Complex
pdb|1JLS|B Chain B, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|A Chain A, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|D Chain D, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLS|C Chain C, Structure Of The Uracil Phosphoribosyltransferase
UracilCPR 2 MUTANT C128V
pdb|1JLR|A Chain A, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|B Chain B, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|D Chain D, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
pdb|1JLR|C Chain C, Structure Of The Uracil Phosphoribosyltransferase Gtp
Complex 2 Mutant C128v
Length = 243
Score = 218 bits (556), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 110/240 (45%), Positives = 155/240 (64%), Gaps = 11/240 (4%)
Query: 212 PRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFV 271
PR ND + I+Q I+T+ + NV ++ T Q+R M T+IRD T +FV
Sbjct: 13 PRYSTNDQE-ESILQDIITR---------FPNVVLMKQTAQLRAMMTIIRDKETPKEEFV 62
Query: 272 FYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRA 331
FYADRLIRL++E L LPF +K++ TP Y GV F ++CG+SI+R+GESME+ LRA
Sbjct: 63 FYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRA 122
Query: 332 XXXXXXXXXXLIHR-EGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390
LI R E + +LIY+KLPADI R V+LLDP+ A+ S KAI ++L
Sbjct: 123 VCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRL 182
Query: 391 GVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
GV E IIF+N++AAPQGI + K +PK+++VT+ +D ++ ++PG+G+FGDRYFGT
Sbjct: 183 GVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 242
>pdb|1UPU|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPU|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v, Bound To Product Uridine-1-Monophosphate (Ump)
pdb|1UPF|D Chain D, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|C Chain C, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|B Chain B, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
pdb|1UPF|A Chain A, Structure Of The Uracil Phosphoribosyltransferase, Mutant
C128v Bound To The Drug 5-Fluorouracil
Length = 224
Score = 216 bits (551), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 103/217 (47%), Positives = 145/217 (66%), Gaps = 1/217 (0%)
Query: 235 HDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEK 294
D+ + NV ++ T Q+R M T+IRD T +FVFYADRLIRL++E L LPF +K
Sbjct: 7 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKK 66
Query: 295 QIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRAXXXXXXXXXXLIHR-EGNSGRQL 353
++ TP Y GV F ++CG+SI+R+GESME+ LRA LI R E + +L
Sbjct: 67 EVTTPLDVSYHGVSFYSKICGVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKL 126
Query: 354 IYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAIC 413
IY+KLPADI R V+LLDP+ A+ S KAI ++L GV E IIF+N++AAPQGI +
Sbjct: 127 IYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVKEERIIFVNILAAPQGIERVF 186
Query: 414 KRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
K +PK+++VT+ +D ++ ++PG+G+FGDRYFGT
Sbjct: 187 KEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGT 223
>pdb|3ASY|A Chain A, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASY|B Chain B, Ligand-Free Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|A Chain A, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
pdb|3ASZ|B Chain B, Cmp-Complex Structure Of Uridine Kinase From Thermus
Thermophilus Hb8
Length = 211
Score = 189 bits (481), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 92/197 (46%), Positives = 128/197 (64%), Gaps = 1/197 (0%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M +PFVIG+AGGTASGKTT+ + +R +RV L+ D +Y L L+ N+
Sbjct: 1 MSAPKPFVIGIAGGTASGKTTLAQAL-ARTLGERVALLPMDHYYKDLGHLPLEERLRVNY 59
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP 146
DHPDAFD L L + L G V +P YDF+++ R + + P+ V ILEGILVL+
Sbjct: 60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK 119
Query: 147 RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKY 206
+RDLM +K+FVD D+D R RR++RD +ERGR +E V+ QY VKP F+ P+K+Y
Sbjct: 120 ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRY 179
Query: 207 ADIIIPRGGDNDVAIDL 223
AD+I+PRGG N VA+++
Sbjct: 180 ADVIVPRGGQNPVALEM 196
>pdb|1I5E|A Chain A, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
pdb|1I5E|B Chain B, Crystal Structure Of Bacillus Caldolyticus Uracil
Phosphoribosyltransferase With Bound Ump
Length = 209
Score = 108 bits (269), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 103/194 (53%), Gaps = 3/194 (1%)
Query: 258 TLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGIS 317
T IRD T T +F D + L+ LP E +I TP V+ ++L I
Sbjct: 17 TYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVSKARAKVIAGKKLGVIP 76
Query: 318 IIRSGESMENALRAXXXXXXXXXXLIHREGNSGRQL-IYQKLPADISSRHVLLLDPILAS 376
I+R+G M + + ++R+ + + + Y KLP+D+ R +++DP+LA+
Sbjct: 77 ILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPMLAT 136
Query: 377 GNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACV 436
G SAV AI + +G +I F+ LIAAP+G+ A+ P + I + +D +++H +
Sbjct: 137 GGSAVAAIDALKKRGA--KSIKFMCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYI 194
Query: 437 IPGMGEFGDRYFGT 450
+PG+G+ GDR FGT
Sbjct: 195 VPGLGDAGDRLFGT 208
>pdb|3DMP|A Chain A, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|B Chain B, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|C Chain C, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
pdb|3DMP|D Chain D, 2.6 A Crystal Structure Of Uracil
Phosphoribosyltransferase From Burkholderia Pseudomallei
Length = 217
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 103/195 (52%), Gaps = 1/195 (0%)
Query: 258 TLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGIS 317
T +RD T+T F + L+ +LP T K++ TP + V+ ++L +
Sbjct: 24 THMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLVEIDAPVIAGKKLAIVP 83
Query: 318 IIRSGESMENALRAXXXXXXXXXXLIHREGNSGRQLIYQKLPADISSRHVLLLDPILASG 377
++R+G M + L ++R + +LP D+ R +L DP++A+G
Sbjct: 84 VLRAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATG 142
Query: 378 NSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVI 437
SA AI ++ +GVP ++FL L+AAP+G+ P +K+ + +DS +D+HA ++
Sbjct: 143 YSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIV 202
Query: 438 PGMGEFGDRYFGTDN 452
PG+G+ GDR FGT N
Sbjct: 203 PGLGDAGDRLFGTKN 217
>pdb|1V9S|A Chain A, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|B Chain B, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|C Chain C, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
pdb|1V9S|D Chain D, Crystal Structure Of Tt0130 Protein From Thermus
Thermophilus Hb8
Length = 208
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 95/192 (49%), Gaps = 3/192 (1%)
Query: 260 IRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISII 319
+RD T DF A+ + L L E + TP V+ ++L ++I+
Sbjct: 18 LRDKRTGPKDFRELAEEVAXLXAYEAXRDLELEETTVETPIAPARVKVLSGKKLALVAIL 77
Query: 320 RSGESMENALRAXXXXXXXXXXLIHREGNSGRQLIYQ-KLPADISSRHVLLLDPILASGN 378
R+G + ++R+ S + Y KLP DI+ R LLDP LA+G
Sbjct: 78 RAGLVXVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPXLATGG 137
Query: 379 SAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIP 438
SA A+SL+ +G + + ++AAP+G+ I K P ++V + ID +++H ++P
Sbjct: 138 SASLALSLLKERGA--TGVKLXAILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVP 195
Query: 439 GMGEFGDRYFGT 450
G+G+ GDR +GT
Sbjct: 196 GLGDAGDRIYGT 207
>pdb|1O5O|A Chain A, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|B Chain B, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|C Chain C, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
pdb|1O5O|D Chain D, Crystal Structure Of Uracil Phosphoribosyltransferase
(Tm0721) From Thermotoga Maritima At 2.30 A Resolution
Length = 221
Score = 93.2 bits (230), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/206 (28%), Positives = 103/206 (50%), Gaps = 3/206 (1%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
V+V I+ T++RD T +F + L+ HL E ++ TP
Sbjct: 17 VVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPITKTIG 76
Query: 306 GVVFCRRLCGISIIRSGESMENALRAXXXXXXXXXXLIHREGNSGRQL-IYQKLPADISS 364
+ + + + I+R+G M + + I+R+ + + + Y KLP
Sbjct: 77 YRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDD 136
Query: 365 RHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTS 424
+ V LLDP+LA+G S++KAI ++ G I + LIAAP+G+ A+ K++ +KI +
Sbjct: 137 KEVFLLDPMLATGVSSIKAIEILKENGA--KKITLVALIAAPEGVEAVEKKYEDVKIYVA 194
Query: 425 EIDSSIDEHACVIPGMGEFGDRYFGT 450
+D +++H +IPG+G+ GDR F T
Sbjct: 195 ALDERLNDHGYIIPGLGDAGDRLFRT 220
>pdb|2EHJ|A Chain A, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|B Chain B, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|C Chain C, Structure Of Uracil Phosphoribosyl Transferase
pdb|2EHJ|D Chain D, Structure Of Uracil Phosphoribosyl Transferase
Length = 208
Score = 88.6 bits (218), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 98/193 (50%), Gaps = 3/193 (1%)
Query: 259 LIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISI 318
L+R+ +T F A + L+ L + I G V + +++ + I
Sbjct: 17 LMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEIDQIKGKKITVVPI 76
Query: 319 IRSGESMENALRAXXXXXXXXXXLIHREGNSGRQLIY-QKLPADISSRHVLLLDPILASG 377
+R+G M + + ++R + + Y QKL ++I R L++DP+LA+G
Sbjct: 77 LRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATG 136
Query: 378 NSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVI 437
S + I L+ G S+I L L+AAP+GI A+ K P +++ T+ ID ++EH +I
Sbjct: 137 GSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYII 194
Query: 438 PGMGEFGDRYFGT 450
PG+G+ GD+ FGT
Sbjct: 195 PGLGDAGDKIFGT 207
>pdb|2E55|A Chain A, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|B Chain B, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|C Chain C, Structure Of Aq2163 Protein From Aquifex Aeolicus
pdb|2E55|D Chain D, Structure Of Aq2163 Protein From Aquifex Aeolicus
Length = 208
Score = 65.9 bits (159), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/172 (26%), Positives = 88/172 (51%), Gaps = 4/172 (2%)
Query: 280 LVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGES-MENALRAXXXXXXX 338
++V L + EK++ T G+ + + + I+R+G S +E AL+
Sbjct: 37 MLVYEALKDILLEEKEVRTWIGNKRFNYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVG 96
Query: 339 XXXLIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNII 398
+ E + Y +LP ++ + V++LDP+LA+G + A+ IL K P +
Sbjct: 97 FLGIKRNEETLESHIYYSRLP-ELKGKIVVILDPMLATGGTLEVALREIL-KHSP-LKVK 153
Query: 399 FLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
++ IAAP+G+ I ++F +++I +D +++ +IPG+G+ GDR +
Sbjct: 154 SVHAIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAV 205
>pdb|3TQC|A Chain A, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
pdb|3TQC|B Chain B, Structure Of The Pantothenate Kinase (Coaa) From Coxiella
Burnetii
Length = 321
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 62/241 (25%), Positives = 103/241 (42%), Gaps = 39/241 (16%)
Query: 16 SLQSASSESTTMPT-KQPFVIGVAGGTASGKTT---VCNMIISRLRDQ-RVVLVNQDSFY 70
+LQ A+ + P K P++IG+AG A GK+T V ++SR D V ++ D F
Sbjct: 75 TLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFL 134
Query: 71 HSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ-AVSIPDYDFKSHK-RKQQSRL 128
+S + Q L P+++D LL + +K GQ V IP Y + + Q +
Sbjct: 135 YSNAKLEKQGLMKRK-GFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEI 193
Query: 129 INPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQY 188
++ D+ ILEG+ +L + L +++FV D L Q +++ I+ VL +
Sbjct: 194 VDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWY-IDRVLSFW 252
Query: 189 ----------------------ARFVKPSFEEF--------ILPSKKYADIIIPRGGDND 218
A F K + E ILP K A +I+ + D+
Sbjct: 253 RTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHS 312
Query: 219 V 219
+
Sbjct: 313 I 313
>pdb|1XTT|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTT|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump)
pdb|1XTU|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTU|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
In Complex With Uridine 5'-Monophosphate (Ump) And
Cytidine 5'-Triphosphate (Ctp)
pdb|1XTV|A Chain A, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|B Chain B, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|C Chain C, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|D Chain D, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|E Chain E, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|F Chain F, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|G Chain G, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1XTV|H Chain H, Sulfolobus Solfataricus Uracil Phosphoribosyltransferase
With Uridine 5'-Monophosphate (Ump) Bound To Half Of The
Subunits
pdb|1VST|A Chain A, Symmetric Sulfolobus Solfataricus Uracil
Phosphoribosyltransferase With Bound Prpp And Gtp
pdb|3G6W|A Chain A, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|B Chain B, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|C Chain C, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
pdb|3G6W|D Chain D, Asymetric Gtp Bound Structure Of Uprtase From Sulfolobus
Solfataricus Containing Prpp-Mg2+ In Half Of The Active
Sites And R5p And Ppi In The Other Half
Length = 216
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 62/97 (63%), Gaps = 5/97 (5%)
Query: 355 YQKLPADISSR--HVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAI 412
Y+K+P DI ++ +V++ DP++A+ ++ +K + ++ K P+ I +++I++ G++ I
Sbjct: 123 YKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVV-KANPKR-IYIVSIISSEYGVNKI 179
Query: 413 CKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFG 449
++P I + T ID ++ ++PG+G+ GDR FG
Sbjct: 180 LSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>pdb|1ESM|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESM|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|A Chain A, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|B Chain B, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|C Chain C, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
pdb|1ESN|D Chain D, Structural Basis For The Feedback Regulation Of
Escherichia Coli Pantothenate Kinase By Coenzyme A
Length = 316
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 96/224 (42%), Gaps = 38/224 (16%)
Query: 32 PFVIGVAGGTASGKTT---VCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQNLHDYNFD 87
P++I +AG A GK+T V ++SR + +RV L+ D F H K + L
Sbjct: 88 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLXKKK-G 146
Query: 88 HPDAFDTELLLSDMEKLKHG-QAVSIPDYDFKSHK--RKQQSRLINPSDVFILEGILVL- 143
P+++D L+ + LK G V+ P Y + ++ P D+ ILEG+ VL
Sbjct: 147 FPESYDXHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQP-DILILEGLNVLQ 205
Query: 144 ------HDPR---VRDLMSMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLDQYARF 191
HDP V D + I+VD D+ + I R R D + YA+
Sbjct: 206 SGXDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYAKL 265
Query: 192 VKP----------------SFEEFILPSKKYADIIIPRGGDNDV 219
K + ++ ILP+++ A +I+ + ++ V
Sbjct: 266 TKEEAIKTAXTLWKEINWLNLKQNILPTRERASLILTKSANHAV 309
>pdb|1SQ5|A Chain A, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|B Chain B, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|C Chain C, Crystal Structure Of E. Coli Pantothenate Kinase
pdb|1SQ5|D Chain D, Crystal Structure Of E. Coli Pantothenate Kinase
Length = 308
Score = 48.5 bits (114), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/226 (25%), Positives = 96/226 (42%), Gaps = 42/226 (18%)
Query: 32 PFVIGVAGGTASGKTT---VCNMIISRLRD-QRVVLVNQDSFYHS---LTDEKLQNLHDY 84
P++I +AG A GK+T V ++SR + +RV L+ D F H L + L +
Sbjct: 80 PYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGLMKKKGF 139
Query: 85 NFDHPDAFDTELLLSDMEKLKHG-QAVSIPDYDFKSHKR-KQQSRLINPSDVFILEGILV 142
P+++D L+ + LK G V+ P Y + + + D+ ILEG+ V
Sbjct: 140 ----PESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNV 195
Query: 143 L-------HDPR---VRDLMSMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLDQYA 189
L HDP V D + I+VD D+ + I R R D + YA
Sbjct: 196 LQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFHNYA 255
Query: 190 RFVKP----------------SFEEFILPSKKYADIIIPRGGDNDV 219
+ K + ++ ILP+++ A +I+ + ++ V
Sbjct: 256 KLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHAV 301
>pdb|1RZ3|A Chain A, Structure Of A Possible Uridine Kinase From Bacillus
Stearothermophilus
Length = 201
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 93/198 (46%), Gaps = 30/198 (15%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV---------LVNQDSFYHSLTDEK 77
+ T V+G+ G + SGKTT+ N + LR+Q + +V + YH+ +E
Sbjct: 17 IKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHXDDHIVERAKRYHTGNEEW 76
Query: 78 LQNLHDYNFDHPDAFDTELLLSDM-EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFI 136
+ + +D E L + +LK +++P YD ++ +++ ++ SD
Sbjct: 77 FEYYY-------LQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDXIX 129
Query: 137 LEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSF 196
+EG+ L R +++D ++R +R + D V+ ++I+ +++Y +
Sbjct: 130 IEGVF-LQRKEWRPFFDFVVYLDCPREIRFAR--ENDQVK--QNIQKFINRYWK-----A 179
Query: 197 EEFILPSK---KYADIII 211
E++ L ++ K AD++
Sbjct: 180 EDYYLETEEPIKRADVVF 197
>pdb|3AVO|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenate
pdb|3AVQ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With N9-Pan
Length = 322
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 32 PFVIGVAGGTASGKTT---VCNMIISRL-RDQRVVLVNQDSFYHSLTDEKLQNL-HDYNF 86
PF+IGVAG A GK+T V +++R RV LV D F + + + +NL H F
Sbjct: 100 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 159
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVS-IPDYDFKSHKRKQ----QSRLINPSDVFILEGIL 141
P++++ L+ + +K G + P Y SH +++ D+ ILEG+
Sbjct: 160 --PESYNRRALMRFVTSVKSGSDYACAPVY---SHLHYDIIPGAEQVVRHPDILILEGLN 214
Query: 142 VLHDP---RVRDLMSMKIFVDTD----SDVRLSRRIQRDTVERGRDIEDVLDQYARFV-- 192
VL V DL ++VD +SR + T D E YA F
Sbjct: 215 VLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFA-DPESHFHHYAAFSDS 273
Query: 193 --------------KPSFEEFILPSKKYADIIIPRGGDNDV 219
+P+ E ILP++ A +++ + D+ +
Sbjct: 274 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 314
>pdb|2ZS7|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Citrate Anion
pdb|2ZS8|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Co- Crystallized With Adp
pdb|2ZS9|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Pantothenate
pdb|2ZSA|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Adp And Phosphopantothenate
pdb|2ZSB|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Adp, Obtained Through Soaking
Of Native Enzyme Crystals With The Ligand
pdb|2ZSD|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Coenzyme A
pdb|2ZSE|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(mtpank) In Complex With Amppcp And Pantothenate
pdb|2ZSF|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Atp And Adp
pdb|3AEZ|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Phosphopantothenate
pdb|3AF0|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp And Pantothenate
pdb|3AF1|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gdp
pdb|3AF2|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Amppcp
pdb|3AF3|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp And Pantothenate
pdb|3AF4|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) Complex With Gmppcp
pdb|3AVP|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With Pantothenol
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 94/221 (42%), Gaps = 39/221 (17%)
Query: 32 PFVIGVAGGTASGKTT---VCNMIISRL-RDQRVVLVNQDSFYHSLTDEKLQNL-HDYNF 86
PF+IGVAG A GK+T V +++R RV LV D F + + + +NL H F
Sbjct: 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 149
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVS-IPDYDFKSHKRKQ----QSRLINPSDVFILEGIL 141
P++++ L+ + +K G + P Y SH +++ D+ ILEG+
Sbjct: 150 --PESYNRRALMRFVTSVKSGSDYACAPVY---SHLHYDIIPGAEQVVRHPDILILEGLN 204
Query: 142 VLHDP---RVRDLMSMKIFVDTD----SDVRLSRRIQRDTVERGRDIEDVLDQYARFV-- 192
VL V DL ++VD +SR + T D E YA F
Sbjct: 205 VLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFA-DPESHFHHYAAFSDS 263
Query: 193 --------------KPSFEEFILPSKKYADIIIPRGGDNDV 219
+P+ E ILP++ A +++ + D+ +
Sbjct: 264 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304
>pdb|2GES|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Rt)
pdb|2GET|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative, Form-I
(Lt)
pdb|2GEU|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Rt)
pdb|2GEV|A Chain A, Pantothenate Kinase From Mycobacterium Tuberculosis
(Mtpank) In Complex With A Coenzyme A Derivative,
Form-Ii (Lt)
Length = 312
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 58/221 (26%), Positives = 93/221 (42%), Gaps = 39/221 (17%)
Query: 32 PFVIGVAGGTASGKTT---VCNMIISRL-RDQRVVLVNQDSFYHSLTDEKLQNL-HDYNF 86
PF+IGVAG A GK+T V +++R RV LV D F + + + +NL H F
Sbjct: 90 PFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLMHRKGF 149
Query: 87 DHPDAFDTELLLSDMEKLKHGQ-AVSIPDYDFKSHKRKQ----QSRLINPSDVFILEGIL 141
P++++ L+ + +K G P Y SH +++ D+ ILEG+
Sbjct: 150 --PESYNRRALMRFVTSVKSGSDYAXAPVY---SHLHYDIIPGAEQVVRHPDILILEGLN 204
Query: 142 VLHDP---RVRDLMSMKIFVDTD----SDVRLSRRIQRDTVERGRDIEDVLDQYARFV-- 192
VL V DL ++VD +SR + T D E YA F
Sbjct: 205 VLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFA-DPESHFHHYAAFSDS 263
Query: 193 --------------KPSFEEFILPSKKYADIIIPRGGDNDV 219
+P+ E ILP++ A +++ + D+ +
Sbjct: 264 QAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304
>pdb|1QZW|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|C Chain C, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|E Chain E, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZW|G Chain G, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|A Chain A, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
pdb|1QZX|B Chain B, Crystal Structure Of The Complete Core Of Archaeal Srp And
Implications For Inter-Domain Communication
Length = 440
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 13 DDLS-LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMI--ISRLRDQRVVLVNQDSF 69
D+LS L E PTK PF+I + G SGKTT + + R +V LV D +
Sbjct: 84 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 143
Query: 70 YHSLTDEKLQ 79
+ D+ LQ
Sbjct: 144 RPAAYDQLLQ 153
>pdb|3KL4|A Chain A, Recognition Of A Signal Peptide By The Signal Recognition
Particle
Length = 433
Score = 36.6 bits (83), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 13 DDLS-LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMI--ISRLRDQRVVLVNQDSF 69
D+LS L E PTK PF+I + G SGKTT + + R +V LV D +
Sbjct: 77 DELSKLFGGDKEPNVNPTKLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136
Query: 70 YHSLTDEKLQ 79
+ D+ LQ
Sbjct: 137 RPAAYDQLLQ 146
>pdb|4I1U|A Chain A, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1U|B Chain B, Apo Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis
pdb|4I1V|A Chain A, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
pdb|4I1V|B Chain B, Crystal Structure Of A Dephospho-Coa Kinase From
Burkholderia Vietnamiensis Bound To Adp
Length = 210
Score = 31.6 bits (70), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 34/156 (21%), Positives = 68/156 (43%), Gaps = 19/156 (12%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD------EKLQNLHDYNF 86
+ IG+ GG SGKTTV ++ +R LV+ D H +T ++ F
Sbjct: 10 YAIGLTGGIGSGKTTVADLFAAR----GASLVDTDLIAHRITAPAGLAMPAIEQTFGPAF 65
Query: 87 DHPD-----AFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL 141
D A L+ SD + + +A++ P ++ + + ++ P +F++ ++
Sbjct: 66 VAADGSLDRARMRALIFSDEDARRRLEAITHPLIRAETEREARDAQ--GPYVIFVVPLLV 123
Query: 142 VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVER 177
+ + R + VD D +++R +QR+ R
Sbjct: 124 ESRNWKAR--CDRVLVVDCPVDTQIARVMQRNGFTR 157
>pdb|2QG6|A Chain A, Crystal Structure Of Human Nicotinamide Riboside Kinase
(Nrk1) In Complex With Nicotinamide Mononucleotide
(Nmn)
pdb|2QL6|A Chain A, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|B Chain B, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|C Chain C, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|D Chain D, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|E Chain E, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|F Chain F, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|G Chain G, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|H Chain H, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|I Chain I, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|J Chain J, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|K Chain K, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|L Chain L, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|M Chain M, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|N Chain N, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|O Chain O, Human Nicotinamide Riboside Kinase (Nrk1)
pdb|2QL6|P Chain P, Human Nicotinamide Riboside Kinase (Nrk1)
Length = 199
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70
F+IG++G T SGKTT+ + L + V ++QD F+
Sbjct: 4 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDFF 39
>pdb|1JJV|A Chain A, Dephospho-Coa Kinase In Complex With Atp
Length = 206
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 9/19 (47%), Positives = 15/19 (78%)
Query: 33 FVIGVAGGTASGKTTVCNM 51
+++G+ GG SGKTT+ N+
Sbjct: 3 YIVGLTGGIGSGKTTIANL 21
>pdb|2P0E|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Tiazofurin
pdb|2QSY|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With Adp
pdb|2QSZ|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Mononucleotide
pdb|2QT0|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside And An Atp Analogue
pdb|2QT1|A Chain A, Human Nicotinamide Riboside Kinase 1 In Complex With
Nicotinamide Riboside
Length = 207
Score = 30.0 bits (66), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70
F+IG++G T SGKTT+ + L + V ++QD F+
Sbjct: 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSV--ISQDDFF 57
>pdb|1QB7|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani.
pdb|1QB8|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCC|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
pdb|1QCD|A Chain A, Crystal Structures Of Adenine Phosphoribosyltransferase
From Leishmania Donovani
Length = 236
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/73 (26%), Positives = 39/73 (53%), Gaps = 4/73 (5%)
Query: 367 VLLLDPILASGNSAVKAISLILSKG---VPESNIIFLNLIAAPQGIHAICK-RFPKIKIV 422
V+L+D +LA+G +A+ + L+ + V +I+ + + A + IH+ R+ IK +
Sbjct: 141 VVLIDDVLATGGTALSGLQLVEASDAVVVEMVSILSIPFLKAAEKIHSTANSRYKDIKFI 200
Query: 423 TSEIDSSIDEHAC 435
+ D ++ E C
Sbjct: 201 SLLSDDALTEENC 213
>pdb|1VMA|A Chain A, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
pdb|1VMA|B Chain B, Crystal Structure Of Cell Division Protein Ftsy (Tm0570)
From Thermotoga Maritima At 1.60 A Resolution
Length = 306
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 13/33 (39%), Positives = 18/33 (54%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
+P + PFVI V G +GKTT C + D+
Sbjct: 99 VPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDE 131
>pdb|1TEV|A Chain A, Crystal Structure Of The Human UmpCMP KINASE IN OPEN
Conformation
Length = 196
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISR-----------LRDQRVVLVNQDSFYHSLTDEKLQ 79
+P V+ V GG +GK T C I+ + LRD+R N DS Y L ++ ++
Sbjct: 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER---KNPDSQYGELIEKYIK 58
>pdb|2GRJ|A Chain A, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|B Chain B, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|C Chain C, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|D Chain D, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|E Chain E, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|F Chain F, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|G Chain G, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
pdb|2GRJ|H Chain H, Crystal Structure Of Dephospho-Coa Kinase (Ec 2.7.1.24)
(Dephosphocoenzyme A Kinase) (Tm1387) From Thermotoga
Maritima At 2.60 A Resolution
Length = 192
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNL 81
VIGV G +GK+TVC ++ ++ +VN D H + +E + L
Sbjct: 14 VIGVTGKIGTGKSTVCEILKNKYGAH---VVNVDRIGHEVLEEVKEKL 58
>pdb|1J8M|F Chain F, Signal Recognition Particle Conserved Gtpase Domain From
A. Ambivalens
Length = 297
Score = 28.5 bits (62), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 3/60 (5%)
Query: 13 DDLS-LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
D+LS L E +P K P+VI + G +GKTT + + + +V LV D +
Sbjct: 78 DELSNLFGGDKEPKVIPDKIPYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137
>pdb|1UFR|A Chain A, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|B Chain B, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|C Chain C, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
pdb|1UFR|D Chain D, Crystal Structure Of Tt1027 From Thermus Thermophilus Hb8
Length = 181
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 11/42 (26%), Positives = 26/42 (61%)
Query: 352 QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVP 393
Q+ ++P D++ + ++L+D +L +G +A A+ ++ G P
Sbjct: 84 QVRETRIPFDLTGKAIVLVDDVLYTGRTARAALDALIDLGRP 125
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,450,360
Number of Sequences: 62578
Number of extensions: 547612
Number of successful extensions: 1521
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 23
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1477
Number of HSP's gapped (non-prelim): 36
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)