Query 035513
Match_columns 473
No_of_seqs 328 out of 2877
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:35:52 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035513.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035513hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0035 Upp Uracil phosphoribo 100.0 9.8E-69 2.1E-73 480.4 19.2 207 242-451 2-210 (210)
2 PF14681 UPRTase: Uracil phosp 100.0 5E-63 1.1E-67 459.3 17.0 202 249-450 3-207 (207)
3 PLN02541 uracil phosphoribosyl 100.0 5.6E-62 1.2E-66 456.3 21.0 207 243-450 32-243 (244)
4 KOG4203 Armadillo/beta-Catenin 100.0 1.1E-59 2.4E-64 481.5 17.7 423 28-451 40-473 (473)
5 TIGR01091 upp uracil phosphori 100.0 1E-57 2.2E-62 423.8 21.3 205 243-451 1-207 (207)
6 PRK00129 upp uracil phosphorib 100.0 2.7E-56 5.8E-61 415.3 21.3 205 243-451 3-209 (209)
7 KOG1017 Predicted uracil phosp 100.0 1.2E-43 2.5E-48 308.7 12.2 204 239-451 63-267 (267)
8 COG0572 Udk Uridine kinase [Nu 100.0 6.4E-35 1.4E-39 266.4 15.8 205 30-234 6-210 (218)
9 PTZ00301 uridine kinase; Provi 100.0 7.1E-31 1.5E-35 243.9 17.1 202 32-233 3-208 (210)
10 PRK05480 uridine/cytidine kina 100.0 8.4E-28 1.8E-32 225.2 17.5 206 28-233 2-207 (209)
11 PF00485 PRK: Phosphoribulokin 100.0 2.3E-28 5.1E-33 226.2 12.2 183 34-217 1-191 (194)
12 cd02029 PRK_like Phosphoribulo 99.9 7.2E-27 1.6E-31 220.0 19.1 177 34-212 1-200 (277)
13 TIGR00235 udk uridine kinase. 99.9 6.4E-26 1.4E-30 212.0 16.4 203 28-230 2-204 (207)
14 PRK15453 phosphoribulokinase; 99.9 8.2E-25 1.8E-29 207.8 20.4 183 29-212 2-206 (290)
15 cd02023 UMPK Uridine monophosp 99.9 5.8E-25 1.2E-29 204.2 17.0 196 34-229 1-196 (198)
16 PLN02348 phosphoribulokinase 99.9 1.3E-24 2.8E-29 215.5 18.6 183 28-214 45-244 (395)
17 PLN02318 phosphoribulokinase/u 99.9 1.2E-24 2.6E-29 223.7 14.7 211 29-248 62-286 (656)
18 cd02025 PanK Pantothenate kina 99.9 6.8E-24 1.5E-28 199.4 14.8 182 34-217 1-213 (220)
19 cd02028 UMPK_like Uridine mono 99.9 1E-23 2.2E-28 192.2 14.1 174 34-212 1-178 (179)
20 PRK05439 pantothenate kinase; 99.9 1.5E-23 3.3E-28 204.3 15.4 188 28-217 82-301 (311)
21 TIGR00554 panK_bact pantothena 99.9 1.1E-22 2.4E-27 197.1 15.8 185 28-214 58-278 (290)
22 PRK07429 phosphoribulokinase; 99.9 1.2E-21 2.6E-26 193.6 19.1 183 28-214 4-186 (327)
23 cd02026 PRK Phosphoribulokinas 99.9 7.8E-22 1.7E-26 191.0 17.3 177 34-214 1-177 (273)
24 cd02024 NRK1 Nicotinamide ribo 99.8 1.3E-20 2.9E-25 171.5 11.1 141 34-176 1-155 (187)
25 PRK06696 uridine kinase; Valid 99.8 6E-20 1.3E-24 173.6 14.8 180 29-215 19-211 (223)
26 PRK07667 uridine kinase; Provi 99.8 9.2E-20 2E-24 168.4 13.9 176 28-212 13-193 (193)
27 PRK09270 nucleoside triphospha 99.8 5.9E-19 1.3E-23 167.5 15.3 186 28-217 29-224 (229)
28 COG1072 CoaA Panthothenate kin 99.7 2.7E-17 5.9E-22 154.1 13.9 161 26-189 76-247 (283)
29 PRK08233 hypothetical protein; 99.7 8.9E-17 1.9E-21 146.9 13.6 173 31-228 2-175 (182)
30 PRK06547 hypothetical protein; 99.7 1.6E-16 3.5E-21 143.4 13.1 153 29-212 12-171 (172)
31 PF01121 CoaE: Dephospho-CoA k 99.7 1.5E-17 3.3E-22 150.9 0.3 167 33-217 1-178 (180)
32 PRK14733 coaE dephospho-CoA ki 99.6 7.3E-17 1.6E-21 148.9 4.5 172 30-220 4-188 (204)
33 PRK14730 coaE dephospho-CoA ki 99.6 8.8E-17 1.9E-21 148.4 4.1 175 33-224 2-188 (195)
34 PRK00081 coaE dephospho-CoA ki 99.6 1.1E-16 2.4E-21 147.8 4.0 176 32-225 2-188 (194)
35 cd02022 DPCK Dephospho-coenzym 99.6 1.9E-16 4.1E-21 144.6 4.1 166 34-217 1-177 (179)
36 PLN02422 dephospho-CoA kinase 99.6 1.6E-16 3.6E-21 149.0 3.5 179 33-227 2-191 (232)
37 PTZ00451 dephospho-CoA kinase; 99.6 1.8E-16 3.9E-21 150.2 3.6 183 32-228 1-205 (244)
38 PRK14734 coaE dephospho-CoA ki 99.6 2.6E-16 5.7E-21 145.9 3.4 178 33-226 2-190 (200)
39 PLN03046 D-glycerate 3-kinase; 99.6 1.2E-14 2.7E-19 144.7 14.5 168 30-200 210-429 (460)
40 PRK14732 coaE dephospho-CoA ki 99.6 4.9E-16 1.1E-20 143.4 2.6 173 34-224 1-184 (196)
41 PRK14731 coaE dephospho-CoA ki 99.6 1.1E-15 2.5E-20 142.7 4.3 182 30-227 3-199 (208)
42 KOG3308 Uncharacterized protei 99.6 7.1E-15 1.5E-19 130.9 8.5 176 31-214 3-187 (225)
43 COG0237 CoaE Dephospho-CoA kin 99.6 8.6E-16 1.9E-20 141.4 2.7 181 32-231 2-193 (201)
44 PLN02796 D-glycerate 3-kinase 99.5 1.2E-13 2.5E-18 135.9 15.4 167 30-199 98-316 (347)
45 PRK03333 coaE dephospho-CoA ki 99.5 5.7E-15 1.2E-19 150.6 2.6 201 33-251 2-219 (395)
46 TIGR00152 dephospho-CoA kinase 99.5 1E-14 2.2E-19 134.2 3.3 173 34-222 1-184 (188)
47 COG1102 Cmk Cytidylate kinase 99.5 5.3E-14 1.2E-18 121.4 6.9 153 33-221 1-162 (179)
48 PRK13477 bifunctional pantoate 99.5 9.6E-14 2.1E-18 144.2 9.1 194 26-230 279-503 (512)
49 KOG3220 Similar to bacterial d 99.4 3E-14 6.5E-19 126.9 2.0 177 32-224 1-188 (225)
50 cd02020 CMPK Cytidine monophos 99.4 2.4E-12 5.2E-17 113.1 10.2 144 34-213 1-146 (147)
51 PLN02369 ribose-phosphate pyro 99.4 6.1E-12 1.3E-16 123.5 13.3 113 311-427 151-265 (302)
52 PRK01184 hypothetical protein; 99.4 1.7E-12 3.7E-17 118.9 8.6 173 32-229 1-177 (184)
53 COG4240 Predicted kinase [Gene 99.4 8.2E-13 1.8E-17 119.8 6.2 117 29-147 47-178 (300)
54 COG0283 Cmk Cytidylate kinase 99.4 2.9E-12 6.2E-17 116.5 9.1 182 32-229 4-218 (222)
55 PRK06217 hypothetical protein; 99.3 8.2E-12 1.8E-16 114.4 12.1 106 33-175 2-107 (183)
56 COG0703 AroK Shikimate kinase 99.3 1.4E-12 3E-17 115.7 6.1 160 33-230 3-168 (172)
57 PRK08118 topology modulation p 99.3 6.4E-12 1.4E-16 113.2 10.4 101 33-175 2-102 (167)
58 KOG2702 Predicted panthothenat 99.3 1.1E-11 2.4E-16 112.6 10.9 159 29-190 116-298 (323)
59 PRK06762 hypothetical protein; 99.3 3E-11 6.5E-16 108.8 12.1 152 32-228 2-162 (166)
60 PRK13949 shikimate kinase; Pro 99.3 4.8E-12 1E-16 114.2 6.7 158 33-227 2-168 (169)
61 TIGR01203 HGPRTase hypoxanthin 99.3 2.2E-11 4.9E-16 109.3 10.9 96 311-408 26-126 (166)
62 COG1428 Deoxynucleoside kinase 99.3 1E-12 2.2E-17 119.1 2.1 197 32-233 4-211 (216)
63 PRK04182 cytidylate kinase; Pr 99.3 3E-12 6.6E-17 116.6 4.4 166 34-231 2-174 (180)
64 PLN02200 adenylate kinase fami 99.3 4.2E-11 9.1E-16 113.7 11.5 181 24-231 35-225 (234)
65 PRK00625 shikimate kinase; Pro 99.2 1.1E-11 2.4E-16 112.0 6.7 141 34-214 2-150 (173)
66 PRK00131 aroK shikimate kinase 99.2 1.6E-11 3.4E-16 111.1 7.7 163 30-230 2-171 (175)
67 TIGR02173 cyt_kin_arch cytidyl 99.2 8.9E-12 1.9E-16 112.5 5.6 161 33-226 1-168 (171)
68 PRK05057 aroK shikimate kinase 99.2 5.3E-11 1.2E-15 107.8 10.3 159 32-228 4-169 (172)
69 PRK04040 adenylate kinase; Pro 99.2 3.6E-11 7.8E-16 110.3 8.8 168 32-228 2-187 (188)
70 PRK00023 cmk cytidylate kinase 99.2 2.5E-11 5.3E-16 114.7 7.1 187 32-230 4-221 (225)
71 PF13207 AAA_17: AAA domain; P 99.2 1.6E-11 3.4E-16 104.3 4.6 116 34-179 1-117 (121)
72 TIGR01360 aden_kin_iso1 adenyl 99.2 3.6E-11 7.7E-16 110.3 7.2 170 32-229 3-186 (188)
73 PRK13946 shikimate kinase; Pro 99.2 5.2E-11 1.1E-15 109.1 7.7 164 32-234 10-180 (184)
74 PRK08356 hypothetical protein; 99.2 9.3E-11 2E-15 108.5 9.4 175 32-226 5-188 (195)
75 PRK07261 topology modulation p 99.2 4.1E-11 8.9E-16 108.4 6.9 105 34-180 2-107 (171)
76 PRK13948 shikimate kinase; Pro 99.2 9.9E-11 2.1E-15 106.6 8.9 162 29-230 7-175 (182)
77 PRK05205 bifunctional pyrimidi 99.2 7.3E-11 1.6E-15 107.2 7.8 141 266-429 8-166 (176)
78 TIGR01359 UMP_CMP_kin_fam UMP- 99.2 1.6E-10 3.4E-15 105.7 10.1 118 34-174 1-126 (183)
79 PRK05541 adenylylsulfate kinas 99.2 6E-11 1.3E-15 107.9 6.9 43 28-70 3-47 (176)
80 PRK03839 putative kinase; Prov 99.2 3E-10 6.6E-15 103.6 11.5 100 34-173 2-101 (180)
81 KOG2878 Predicted kinase [Gene 99.1 3.1E-10 6.8E-15 101.2 10.6 113 32-146 31-166 (282)
82 PRK13947 shikimate kinase; Pro 99.1 2.9E-10 6.3E-15 102.8 9.8 37 34-73 3-39 (171)
83 PRK10078 ribose 1,5-bisphospho 99.1 3.8E-10 8.3E-15 103.6 10.4 169 33-232 3-178 (186)
84 PRK03092 ribose-phosphate pyro 99.1 1.1E-09 2.3E-14 107.8 14.0 103 311-415 148-252 (304)
85 TIGR00017 cmk cytidylate kinas 99.1 1.6E-10 3.5E-15 108.4 7.7 185 32-224 2-213 (217)
86 KOG3079 Uridylate kinase/adeny 99.1 2.2E-10 4.7E-15 101.3 7.9 177 27-229 3-192 (195)
87 PRK14527 adenylate kinase; Pro 99.1 1.8E-10 4E-15 106.2 7.2 41 28-71 2-42 (191)
88 PRK09518 bifunctional cytidyla 99.1 3.5E-10 7.5E-15 124.4 10.1 188 33-235 2-236 (712)
89 COG0529 CysC Adenylylsulfate k 99.1 8.1E-10 1.8E-14 97.1 10.1 161 26-228 17-189 (197)
90 PRK03731 aroL shikimate kinase 99.1 5.4E-10 1.2E-14 101.1 9.4 156 34-228 4-168 (171)
91 PRK11860 bifunctional 3-phosph 99.1 2.9E-10 6.3E-15 123.9 9.0 182 32-229 442-654 (661)
92 PRK14531 adenylate kinase; Pro 99.1 3.8E-10 8.2E-15 103.3 8.2 164 33-226 3-180 (183)
93 PRK14532 adenylate kinase; Pro 99.0 8.8E-10 1.9E-14 101.3 9.4 115 34-173 2-128 (188)
94 PRK14530 adenylate kinase; Pro 99.0 7.6E-10 1.7E-14 104.0 8.9 119 34-173 5-127 (215)
95 PRK14737 gmk guanylate kinase; 99.0 7.5E-10 1.6E-14 101.4 8.5 173 30-229 2-183 (186)
96 PTZ00088 adenylate kinase 1; P 99.0 1.9E-09 4.2E-14 101.8 11.3 123 30-173 4-131 (229)
97 cd00464 SK Shikimate kinase (S 99.0 1E-09 2.2E-14 97.3 8.5 138 35-214 2-148 (154)
98 TIGR01313 therm_gnt_kin carboh 99.0 4.7E-09 1E-13 94.1 12.6 34 35-71 1-34 (163)
99 PRK13808 adenylate kinase; Pro 99.0 1E-09 2.2E-14 108.2 8.6 171 34-233 2-196 (333)
100 PRK00279 adk adenylate kinase; 99.0 1.5E-09 3.3E-14 102.0 9.4 35 34-71 2-36 (215)
101 PRK14528 adenylate kinase; Pro 99.0 1.7E-09 3.7E-14 99.2 8.9 166 33-224 2-182 (186)
102 TIGR01351 adk adenylate kinase 99.0 1.7E-09 3.7E-14 101.3 8.7 117 35-173 2-125 (210)
103 PLN02199 shikimate kinase 99.0 1.3E-09 2.8E-14 105.0 7.5 163 32-234 102-292 (303)
104 PRK08154 anaerobic benzoate ca 98.9 1.9E-09 4.2E-14 106.8 8.4 169 26-233 127-304 (309)
105 COG1936 Predicted nucleotide k 98.9 2.1E-09 4.6E-14 94.5 7.6 149 33-230 1-156 (180)
106 PLN02674 adenylate kinase 98.9 3.2E-09 7E-14 100.7 8.4 122 30-173 29-159 (244)
107 cd00227 CPT Chloramphenicol (C 98.9 1.1E-08 2.3E-13 93.0 11.6 41 32-73 2-42 (175)
108 PRK00698 tmk thymidylate kinas 98.9 5.7E-09 1.2E-13 97.1 9.9 77 151-231 127-203 (205)
109 PLN02459 probable adenylate ki 98.9 6.2E-09 1.3E-13 99.2 9.9 128 26-173 23-154 (261)
110 PRK02496 adk adenylate kinase; 98.9 4.2E-09 9.1E-14 96.5 8.3 116 33-173 2-129 (184)
111 COG0563 Adk Adenylate kinase a 98.9 4.2E-09 9.1E-14 95.5 7.9 118 34-174 2-129 (178)
112 cd02021 GntK Gluconate kinase 98.9 2.5E-08 5.4E-13 88.1 12.7 36 34-72 1-36 (150)
113 COG3265 GntK Gluconate kinase 98.9 2.5E-08 5.4E-13 85.3 11.8 150 38-229 1-158 (161)
114 KOG3354 Gluconate kinase [Carb 98.9 3.8E-08 8.1E-13 84.5 12.8 146 29-195 9-159 (191)
115 PRK12269 bifunctional cytidyla 98.9 3.8E-09 8.2E-14 116.4 8.5 191 33-230 35-285 (863)
116 cd01672 TMPK Thymidine monopho 98.9 1.3E-08 2.9E-13 93.9 11.0 34 33-66 1-34 (200)
117 TIGR02322 phosphon_PhnN phosph 98.9 2.5E-08 5.4E-13 90.8 11.6 168 33-228 2-176 (179)
118 PF01583 APS_kinase: Adenylyls 98.8 8.7E-09 1.9E-13 90.7 7.8 43 31-73 1-45 (156)
119 cd01428 ADK Adenylate kinase ( 98.8 1.2E-08 2.6E-13 94.1 9.0 115 35-174 2-127 (194)
120 TIGR00041 DTMP_kinase thymidyl 98.8 1.9E-08 4.1E-13 92.9 10.3 29 32-60 3-31 (195)
121 TIGR03574 selen_PSTK L-seryl-t 98.8 4.7E-08 1E-12 94.0 13.3 191 34-288 1-205 (249)
122 PRK01259 ribose-phosphate pyro 98.8 3.7E-08 8.1E-13 97.2 12.6 114 311-429 158-273 (309)
123 PF01202 SKI: Shikimate kinase 98.8 3E-09 6.4E-14 95.0 4.4 149 41-228 1-157 (158)
124 PRK06827 phosphoribosylpyropho 98.8 3.5E-08 7.6E-13 99.3 12.5 111 311-424 207-326 (382)
125 PRK14021 bifunctional shikimat 98.8 6.7E-09 1.4E-13 110.5 7.7 160 31-229 5-175 (542)
126 COG0194 Gmk Guanylate kinase [ 98.8 3.2E-08 7E-13 88.3 10.3 171 31-229 3-181 (191)
127 COG1126 GlnQ ABC-type polar am 98.8 1E-08 2.2E-13 93.3 7.2 141 3-148 1-171 (240)
128 cd02030 NDUO42 NADH:Ubiquinone 98.8 1.1E-08 2.3E-13 96.5 7.5 74 151-229 142-216 (219)
129 PRK15423 hypoxanthine phosphor 98.8 1E-07 2.2E-12 86.4 13.5 120 266-408 10-134 (178)
130 PRK13973 thymidylate kinase; P 98.8 2.7E-08 5.8E-13 93.4 10.0 35 32-66 3-37 (213)
131 PF13238 AAA_18: AAA domain; P 98.8 1.7E-09 3.7E-14 92.5 1.8 113 35-174 1-114 (129)
132 PRK12338 hypothetical protein; 98.8 9.9E-09 2.2E-13 100.5 7.0 39 30-71 2-40 (319)
133 PRK14526 adenylate kinase; Pro 98.8 2.9E-08 6.3E-13 92.7 9.2 35 34-71 2-36 (211)
134 PTZ00271 hypoxanthine-guanine 98.7 7.7E-08 1.7E-12 89.1 11.2 124 266-408 29-160 (211)
135 PRK02812 ribose-phosphate pyro 98.7 1E-07 2.2E-12 94.6 12.6 109 311-424 179-289 (330)
136 cd02019 NK Nucleoside/nucleoti 98.7 2.8E-08 6.1E-13 75.6 6.7 60 34-160 1-63 (69)
137 PRK09825 idnK D-gluconate kina 98.7 2.5E-07 5.5E-12 84.0 14.0 37 32-71 3-39 (176)
138 PRK09162 hypoxanthine-guanine 98.7 2.3E-07 4.9E-12 84.6 13.7 117 266-407 18-138 (181)
139 TIGR03263 guanyl_kin guanylate 98.7 2.4E-08 5.3E-13 91.0 7.1 25 33-57 2-26 (180)
140 KOG3347 Predicted nucleotide k 98.7 4.9E-08 1.1E-12 83.4 8.1 106 32-174 7-115 (176)
141 PTZ00149 hypoxanthine phosphor 98.7 8.5E-08 1.8E-12 90.4 10.6 118 266-408 59-192 (241)
142 COG0125 Tmk Thymidylate kinase 98.7 1.4E-07 3E-12 87.5 11.9 189 31-232 2-205 (208)
143 COG0634 Hpt Hypoxanthine-guani 98.7 1.2E-07 2.7E-12 83.3 10.8 96 311-408 35-135 (178)
144 TIGR03575 selen_PSTK_euk L-ser 98.7 3.8E-07 8.2E-12 90.7 15.7 227 34-289 1-273 (340)
145 PRK00889 adenylylsulfate kinas 98.7 2.9E-08 6.3E-13 90.1 7.2 41 30-70 2-44 (175)
146 PF00156 Pribosyltran: Phospho 98.7 6.9E-08 1.5E-12 82.4 8.8 87 315-403 31-125 (125)
147 TIGR01251 ribP_PPkin ribose-ph 98.7 2.4E-07 5.2E-12 91.7 13.4 108 312-423 160-269 (308)
148 PRK03846 adenylylsulfate kinas 98.7 5.9E-08 1.3E-12 90.0 8.5 43 28-70 20-64 (198)
149 PRK14529 adenylate kinase; Pro 98.7 1.1E-07 2.4E-12 89.2 10.1 117 34-173 2-127 (223)
150 PRK13975 thymidylate kinase; P 98.7 3.8E-08 8.2E-13 91.0 6.8 26 32-57 2-27 (196)
151 PRK12339 2-phosphoglycerate ki 98.7 6.6E-09 1.4E-13 95.9 1.6 37 31-70 2-38 (197)
152 smart00072 GuKc Guanylate kina 98.7 1.4E-07 3E-12 86.4 10.0 174 32-229 2-181 (184)
153 PLN02238 hypoxanthine phosphor 98.6 2.8E-07 6E-12 84.5 11.3 143 266-437 13-164 (189)
154 PF13671 AAA_33: AAA domain; P 98.6 1.1E-07 2.3E-12 83.1 7.8 34 34-70 1-34 (143)
155 COG3954 PrkB Phosphoribulokina 98.6 4.6E-07 1E-11 80.6 11.6 178 31-209 4-203 (289)
156 COG1120 FepC ABC-type cobalami 98.6 3.5E-08 7.5E-13 93.8 4.8 60 4-68 2-65 (258)
157 COG1125 OpuBA ABC-type proline 98.6 2.2E-07 4.7E-12 86.7 9.9 157 4-166 1-200 (309)
158 COG1121 ZnuC ABC-type Mn/Zn tr 98.6 1.2E-07 2.7E-12 89.6 8.3 141 1-146 1-172 (254)
159 PRK07933 thymidylate kinase; V 98.6 2.6E-07 5.7E-12 86.6 10.4 32 33-64 1-32 (213)
160 PRK00300 gmk guanylate kinase; 98.6 2.1E-07 4.4E-12 86.7 9.2 30 28-57 1-30 (205)
161 TIGR00455 apsK adenylylsulfate 98.6 2.9E-07 6.4E-12 84.2 9.8 44 27-70 13-58 (184)
162 PF00406 ADK: Adenylate kinase 98.6 3.5E-08 7.6E-13 87.3 3.3 113 37-171 1-122 (151)
163 COG1131 CcmA ABC-type multidru 98.6 1.2E-07 2.6E-12 93.2 7.2 143 1-148 1-171 (293)
164 PF08433 KTI12: Chromatin asso 98.6 4.8E-07 1E-11 87.6 11.2 197 32-289 1-210 (270)
165 COG3638 ABC-type phosphate/pho 98.6 2.9E-07 6.3E-12 85.0 8.9 50 3-57 2-55 (258)
166 PF07931 CPT: Chloramphenicol 98.5 1.3E-07 2.8E-12 85.2 6.3 162 33-228 2-173 (174)
167 PLN02842 nucleotide kinase 98.5 1.5E-07 3.3E-12 97.4 7.5 32 37-71 2-33 (505)
168 COG2884 FtsE Predicted ATPase 98.5 5.5E-07 1.2E-11 80.5 9.9 49 4-57 1-53 (223)
169 PRK13951 bifunctional shikimat 98.5 3E-07 6.5E-12 96.4 9.5 36 34-72 2-37 (488)
170 PRK00934 ribose-phosphate pyro 98.5 1.1E-06 2.3E-11 86.1 12.8 98 313-415 156-255 (285)
171 PRK14738 gmk guanylate kinase; 98.5 4.9E-07 1.1E-11 84.3 9.9 28 28-55 9-36 (206)
172 cd01673 dNK Deoxyribonucleosid 98.5 4.6E-08 9.9E-13 90.3 2.8 60 151-214 124-185 (193)
173 PF00625 Guanylate_kin: Guanyl 98.5 1.2E-07 2.5E-12 86.9 5.2 175 32-229 2-181 (183)
174 PRK05537 bifunctional sulfate 98.5 3.8E-07 8.2E-12 97.3 9.8 43 28-70 388-433 (568)
175 PHA02530 pseT polynucleotide k 98.5 1.7E-07 3.6E-12 92.7 6.6 37 32-70 2-38 (300)
176 COG1127 Ttg2A ABC-type transpo 98.5 7.1E-07 1.5E-11 82.7 9.3 70 2-77 6-79 (263)
177 PLN02924 thymidylate kinase 98.5 1.2E-06 2.6E-11 82.4 11.1 39 25-63 9-47 (220)
178 COG4088 Predicted nucleotide k 98.5 6E-07 1.3E-11 81.1 8.2 36 32-67 1-36 (261)
179 PRK11545 gntK gluconate kinase 98.5 2.3E-06 5E-11 76.7 12.1 30 38-70 1-30 (163)
180 COG3839 MalK ABC-type sugar tr 98.5 4.9E-07 1.1E-11 89.4 8.3 58 3-65 2-63 (338)
181 TIGR01090 apt adenine phosphor 98.4 1.1E-06 2.4E-11 79.2 9.9 105 314-424 49-166 (169)
182 COG2019 AdkA Archaeal adenylat 98.4 6.4E-07 1.4E-11 78.3 7.5 38 31-70 3-40 (189)
183 COG4619 ABC-type uncharacteriz 98.4 8.8E-07 1.9E-11 77.6 7.8 138 3-146 2-166 (223)
184 PRK13537 nodulation ABC transp 98.4 5.4E-07 1.2E-11 89.3 6.9 52 1-57 4-58 (306)
185 PRK02304 adenine phosphoribosy 98.4 2.9E-06 6.3E-11 77.0 10.4 96 313-413 53-163 (175)
186 PRK13974 thymidylate kinase; P 98.3 3.1E-06 6.6E-11 79.4 10.5 73 151-230 134-206 (212)
187 PRK04220 2-phosphoglycerate ki 98.3 8.7E-07 1.9E-11 86.2 6.7 39 30-70 90-128 (301)
188 PRK05416 glmZ(sRNA)-inactivati 98.3 3.3E-06 7.2E-11 82.4 10.8 24 31-54 5-28 (288)
189 COG1124 DppF ABC-type dipeptid 98.3 5.9E-07 1.3E-11 83.5 5.1 59 3-66 2-68 (252)
190 COG2074 2-phosphoglycerate kin 98.3 1.6E-07 3.4E-12 87.2 1.3 190 28-232 85-289 (299)
191 COG1136 SalX ABC-type antimicr 98.3 9.6E-07 2.1E-11 82.4 6.5 58 4-66 1-66 (226)
192 PRK10584 putative ABC transpor 98.3 9.4E-07 2E-11 83.7 6.5 52 1-57 3-61 (228)
193 PRK04923 ribose-phosphate pyro 98.3 6.7E-06 1.5E-10 81.4 12.4 108 311-424 166-276 (319)
194 PRK12337 2-phosphoglycerate ki 98.3 3.1E-07 6.7E-12 93.8 3.0 38 30-70 253-291 (475)
195 COG1117 PstB ABC-type phosphat 98.3 2.4E-06 5.2E-11 77.9 8.1 86 3-93 6-101 (253)
196 COG4608 AppF ABC-type oligopep 98.3 1.2E-06 2.7E-11 83.0 6.6 122 1-143 1-139 (268)
197 cd03215 ABC_Carb_Monos_II This 98.3 9.9E-07 2.1E-11 80.6 5.7 129 3-146 3-137 (182)
198 PRK02269 ribose-phosphate pyro 98.3 7.8E-06 1.7E-10 81.2 12.3 101 312-415 166-268 (320)
199 PRK13536 nodulation factor exp 98.3 1.5E-06 3.4E-11 87.2 6.8 50 3-57 40-92 (340)
200 PRK05506 bifunctional sulfate 98.3 2.4E-06 5.3E-11 93.0 8.9 44 30-73 458-503 (632)
201 cd03229 ABC_Class3 This class 98.3 5.7E-07 1.2E-11 81.9 3.4 126 5-146 1-133 (178)
202 PRK02458 ribose-phosphate pyro 98.3 1E-05 2.2E-10 80.3 12.3 99 311-415 169-269 (323)
203 PRK11629 lolD lipoprotein tran 98.2 2.4E-06 5.2E-11 81.3 7.4 52 1-57 1-60 (233)
204 PRK07199 phosphoribosylpyropho 98.2 1E-05 2.3E-10 79.6 12.1 99 313-415 162-262 (301)
205 COG1116 TauB ABC-type nitrate/ 98.2 5.2E-06 1.1E-10 77.8 9.4 142 3-149 2-166 (248)
206 PRK09452 potA putrescine/sperm 98.2 1.9E-06 4E-11 87.7 7.0 52 1-57 11-65 (375)
207 PRK09544 znuC high-affinity zi 98.2 2E-06 4.4E-11 82.8 6.8 52 1-57 1-55 (251)
208 COG1135 AbcC ABC-type metal io 98.2 6E-06 1.3E-10 79.4 9.7 137 4-147 1-175 (339)
209 COG0410 LivF ABC-type branched 98.2 2.1E-06 4.5E-11 79.3 6.3 51 3-58 2-55 (237)
210 cd03230 ABC_DR_subfamily_A Thi 98.2 1E-06 2.3E-11 79.8 4.3 123 5-146 1-128 (173)
211 PRK00455 pyrE orotate phosphor 98.2 1.1E-05 2.5E-10 74.9 11.3 102 314-423 67-169 (202)
212 cd03259 ABC_Carb_Solutes_like 98.2 1.9E-06 4.2E-11 80.7 6.1 48 5-57 1-51 (213)
213 cd03228 ABCC_MRP_Like The MRP 98.2 1.3E-06 2.9E-11 78.9 4.8 122 5-146 1-129 (171)
214 TIGR01288 nodI ATP-binding ABC 98.2 2.1E-06 4.6E-11 85.0 6.6 50 3-57 3-55 (303)
215 COG0396 sufC Cysteine desulfur 98.2 1.5E-06 3.2E-11 80.1 5.0 83 3-93 2-94 (251)
216 cd03246 ABCC_Protease_Secretio 98.2 1.5E-06 3.3E-11 78.7 5.1 122 5-146 1-129 (173)
217 PRK11000 maltose/maltodextrin 98.2 2.3E-06 5E-11 87.0 7.0 50 3-57 2-54 (369)
218 PRK13647 cbiO cobalt transport 98.2 2E-06 4.4E-11 83.9 6.2 52 1-57 1-56 (274)
219 PRK13976 thymidylate kinase; P 98.2 1.6E-06 3.5E-11 80.9 5.3 26 33-58 1-26 (209)
220 PRK09536 btuD corrinoid ABC tr 98.2 3.2E-06 6.9E-11 86.6 7.9 50 3-57 2-54 (402)
221 cd03255 ABC_MJ0796_Lo1CDE_FtsE 98.2 2.3E-06 5E-11 80.4 6.3 48 5-57 1-55 (218)
222 PRK11174 cysteine/glutathione 98.2 1.8E-06 3.9E-11 93.6 6.2 53 4-61 349-405 (588)
223 TIGR02868 CydC thiol reductant 98.2 1.3E-06 2.8E-11 93.4 5.1 49 4-57 334-386 (529)
224 cd03269 ABC_putative_ATPase Th 98.2 1.9E-06 4.2E-11 80.5 5.5 48 5-57 1-51 (210)
225 PRK14267 phosphate ABC transpo 98.2 1.9E-06 4.2E-11 82.9 5.6 52 1-57 1-55 (253)
226 COG2065 PyrR Pyrimidine operon 98.2 7E-06 1.5E-10 71.1 8.3 117 266-405 8-136 (179)
227 TIGR02673 FtsE cell division A 98.2 2.3E-06 5.1E-11 80.2 5.9 49 4-57 1-53 (214)
228 PRK11432 fbpC ferric transport 98.2 3E-06 6.6E-11 85.4 7.1 50 3-57 5-57 (351)
229 KOG0058 Peptide exporter, ABC 98.2 5.1E-06 1.1E-10 88.1 9.0 52 2-58 463-520 (716)
230 cd02027 APSK Adenosine 5'-phos 98.2 6.3E-06 1.4E-10 72.7 8.3 37 34-70 1-39 (149)
231 COG2274 SunT ABC-type bacterio 98.2 2.1E-06 4.5E-11 93.5 5.9 51 3-58 470-525 (709)
232 PRK11607 potG putrescine trans 98.2 3.1E-06 6.8E-11 86.1 6.9 52 1-57 16-70 (377)
233 TIGR03864 PQQ_ABC_ATP ABC tran 98.2 3E-06 6.4E-11 80.8 6.3 49 4-57 1-52 (236)
234 PF02223 Thymidylate_kin: Thym 98.2 2.7E-06 5.8E-11 78.0 5.8 26 37-62 1-26 (186)
235 PRK11650 ugpC glycerol-3-phosp 98.2 3.5E-06 7.5E-11 85.2 7.0 50 3-57 2-55 (356)
236 PLN02165 adenylate isopentenyl 98.2 9.7E-06 2.1E-10 80.0 9.8 39 28-69 39-77 (334)
237 cd03224 ABC_TM1139_LivF_branch 98.2 2.9E-06 6.2E-11 80.0 5.9 48 5-57 1-51 (222)
238 PRK13549 xylose transporter AT 98.2 4.7E-06 1E-10 88.6 8.2 51 2-57 3-56 (506)
239 cd03296 ABC_CysA_sulfate_impor 98.2 4.4E-06 9.6E-11 79.8 7.2 49 4-57 2-53 (239)
240 PRK13548 hmuV hemin importer A 98.2 3.9E-06 8.4E-11 81.2 6.8 49 4-57 2-53 (258)
241 PRK13635 cbiO cobalt transport 98.2 3.1E-06 6.6E-11 82.9 6.2 51 2-57 3-58 (279)
242 KOG0635 Adenosine 5'-phosphosu 98.2 2E-05 4.4E-10 67.6 10.2 45 29-73 28-74 (207)
243 cd03232 ABC_PDR_domain2 The pl 98.2 2E-06 4.4E-11 79.2 4.6 129 3-146 2-141 (192)
244 cd03265 ABC_DrrA DrrA is the A 98.1 2.9E-06 6.3E-11 80.0 5.7 48 5-57 1-51 (220)
245 cd03216 ABC_Carb_Monos_I This 98.1 1.6E-06 3.4E-11 77.8 3.6 48 5-57 1-51 (163)
246 COG0462 PrsA Phosphoribosylpyr 98.1 1.5E-05 3.3E-10 77.3 10.5 90 321-415 173-265 (314)
247 PRK10762 D-ribose transporter 98.1 5.8E-06 1.3E-10 87.8 8.4 52 1-57 1-55 (501)
248 PRK11248 tauB taurine transpor 98.1 4.4E-06 9.6E-11 80.6 6.7 49 4-57 1-52 (255)
249 cd03293 ABC_NrtD_SsuB_transpor 98.1 3.6E-06 7.8E-11 79.3 5.9 48 5-57 1-55 (220)
250 KOG4235 Mitochondrial thymidin 98.1 1.2E-06 2.5E-11 78.3 2.3 84 127-214 129-217 (244)
251 cd03217 ABC_FeS_Assembly ABC-t 98.1 2.8E-06 6.1E-11 78.9 5.0 129 5-146 1-137 (200)
252 TIGR02314 ABC_MetN D-methionin 98.1 8.5E-06 1.8E-10 81.8 8.7 58 4-66 1-66 (343)
253 PLN02293 adenine phosphoribosy 98.1 2.4E-05 5.3E-10 71.5 10.9 50 363-414 124-175 (187)
254 TIGR03265 PhnT2 putative 2-ami 98.1 4.6E-06 1E-10 84.2 6.6 50 3-57 3-55 (353)
255 PRK10418 nikD nickel transport 98.1 6.5E-06 1.4E-10 79.4 7.3 52 1-57 1-54 (254)
256 COG1118 CysA ABC-type sulfate/ 98.1 6.7E-06 1.4E-10 78.9 7.1 59 4-67 2-64 (345)
257 cd03247 ABCC_cytochrome_bd The 98.1 2E-06 4.3E-11 78.3 3.5 124 5-146 1-131 (178)
258 COG4167 SapF ABC-type antimicr 98.1 3.1E-06 6.6E-11 75.2 4.4 85 1-90 1-97 (267)
259 cd03263 ABC_subfamily_A The AB 98.1 4E-06 8.7E-11 78.9 5.6 48 5-57 1-53 (220)
260 PRK15439 autoinducer 2 ABC tra 98.1 3.8E-06 8.2E-11 89.3 6.0 52 1-57 8-62 (510)
261 COG3709 Uncharacterized compon 98.1 8.5E-05 1.8E-09 64.8 13.0 169 31-229 4-181 (192)
262 cd03225 ABC_cobalt_CbiO_domain 98.1 4.2E-06 9.1E-11 78.3 5.4 47 6-57 1-52 (211)
263 cd03218 ABC_YhbG The ABC trans 98.1 6.5E-06 1.4E-10 78.2 6.8 48 5-57 1-51 (232)
264 cd03266 ABC_NatA_sodium_export 98.1 3.9E-06 8.5E-11 78.9 5.2 49 4-57 1-56 (218)
265 KOG3877 NADH:ubiquinone oxidor 98.1 3.3E-06 7.3E-11 79.3 4.6 41 30-70 69-109 (393)
266 TIGR01367 pyrE_Therm orotate p 98.1 2.1E-05 4.5E-10 72.1 9.8 88 314-409 61-148 (187)
267 PRK02277 orotate phosphoribosy 98.1 2.4E-05 5.3E-10 72.5 10.4 93 314-412 88-185 (200)
268 TIGR01663 PNK-3'Pase polynucle 98.1 1.1E-05 2.3E-10 84.9 8.9 40 27-69 364-403 (526)
269 PRK00553 ribose-phosphate pyro 98.1 4.6E-05 1E-09 75.9 12.9 99 312-415 169-269 (332)
270 PRK14259 phosphate ABC transpo 98.1 6.9E-06 1.5E-10 79.9 7.0 50 3-57 12-64 (269)
271 cd03301 ABC_MalK_N The N-termi 98.1 5.2E-06 1.1E-10 77.7 5.9 48 5-57 1-51 (213)
272 PF06414 Zeta_toxin: Zeta toxi 98.1 9.9E-06 2.1E-10 75.1 7.6 46 29-74 12-57 (199)
273 PRK11153 metN DL-methionine tr 98.1 5.5E-06 1.2E-10 83.5 6.4 49 4-57 1-56 (343)
274 PRK10938 putative molybdenum t 98.1 6.9E-06 1.5E-10 87.0 7.4 51 1-57 1-54 (490)
275 PRK13650 cbiO cobalt transport 98.1 5.5E-06 1.2E-10 81.0 6.1 52 1-57 1-58 (279)
276 PRK10070 glycine betaine trans 98.1 7.5E-06 1.6E-10 83.8 7.1 60 1-65 1-88 (400)
277 PLN02772 guanylate kinase 98.1 1.5E-05 3.3E-10 80.0 9.0 176 30-229 133-317 (398)
278 TIGR03522 GldA_ABC_ATP gliding 98.1 6.2E-06 1.4E-10 81.6 6.2 49 4-57 2-53 (301)
279 COG4604 CeuD ABC-type enteroch 98.1 1.5E-05 3.3E-10 71.8 8.0 134 4-142 1-164 (252)
280 COG1122 CbiO ABC-type cobalt t 98.1 1.4E-05 3E-10 75.8 8.3 51 3-58 2-56 (235)
281 PRK13636 cbiO cobalt transport 98.1 7.5E-06 1.6E-10 80.3 6.6 60 1-65 1-66 (283)
282 PRK09984 phosphonate/organopho 98.1 2.5E-06 5.5E-11 82.6 3.2 52 1-57 1-55 (262)
283 PRK10744 pstB phosphate transp 98.0 7.7E-06 1.7E-10 79.1 6.6 49 3-56 12-63 (260)
284 cd03295 ABC_OpuCA_Osmoprotecti 98.0 6.4E-06 1.4E-10 78.8 5.8 48 5-57 1-52 (242)
285 TIGR02211 LolD_lipo_ex lipopro 98.0 9E-06 1.9E-10 76.6 6.7 49 4-57 1-56 (221)
286 TIGR00336 pyrE orotate phospho 98.0 3.9E-05 8.4E-10 69.5 10.5 105 314-423 57-166 (173)
287 PRK13642 cbiO cobalt transport 98.0 7.2E-06 1.6E-10 80.2 6.2 52 1-57 1-58 (277)
288 TIGR03796 NHPM_micro_ABC1 NHPM 98.0 4.4E-06 9.6E-11 92.5 5.3 49 4-57 477-530 (710)
289 PRK10522 multidrug transporter 98.0 7.7E-06 1.7E-10 87.8 6.9 49 4-57 322-374 (547)
290 cd03233 ABC_PDR_domain1 The pl 98.0 4.5E-06 9.7E-11 77.6 4.5 49 4-57 3-58 (202)
291 PRK14249 phosphate ABC transpo 98.0 3.9E-06 8.4E-11 80.8 4.2 52 1-57 1-55 (251)
292 TIGR03797 NHPM_micro_ABC2 NHPM 98.0 4.7E-06 1E-10 92.0 5.1 49 4-57 451-504 (686)
293 PRK13652 cbiO cobalt transport 98.0 9.4E-06 2E-10 79.4 6.7 51 2-57 1-55 (277)
294 PF03668 ATP_bind_2: P-loop AT 98.0 3.6E-05 7.8E-10 74.0 10.4 63 154-225 84-150 (284)
295 PRK13648 cbiO cobalt transport 98.0 1.1E-05 2.3E-10 78.6 6.9 50 3-57 6-60 (269)
296 PRK14256 phosphate ABC transpo 98.0 3.3E-06 7.3E-11 81.3 3.3 51 1-56 1-54 (252)
297 cd03213 ABCG_EPDR ABCG transpo 98.0 5.9E-06 1.3E-10 76.3 4.7 129 4-146 3-144 (194)
298 KOG0057 Mitochondrial Fe/S clu 98.0 1.2E-05 2.5E-10 82.7 7.2 58 4-66 351-412 (591)
299 TIGR00958 3a01208 Conjugate Tr 98.0 5.9E-06 1.3E-10 91.4 5.5 50 4-58 478-533 (711)
300 COG3842 PotA ABC-type spermidi 98.0 4.4E-06 9.5E-11 83.1 4.0 60 2-66 3-66 (352)
301 PRK11176 lipid transporter ATP 98.0 6.5E-06 1.4E-10 89.1 5.6 50 4-58 341-395 (582)
302 PRK13632 cbiO cobalt transport 98.0 8.6E-06 1.9E-10 79.3 5.9 50 3-57 6-60 (271)
303 PRK14251 phosphate ABC transpo 98.0 3.7E-06 8.1E-11 80.9 3.3 52 1-57 1-55 (251)
304 PRK13657 cyclic beta-1,2-gluca 98.0 7.3E-06 1.6E-10 88.8 5.8 49 4-57 334-386 (588)
305 PRK10851 sulfate/thiosulfate t 98.0 1.3E-05 2.8E-10 81.0 7.2 49 4-57 2-53 (353)
306 COG4555 NatA ABC-type Na+ tran 98.0 1.3E-05 2.8E-10 72.6 6.2 57 4-65 1-62 (245)
307 PRK13640 cbiO cobalt transport 98.0 1.2E-05 2.6E-10 78.8 6.7 51 2-57 3-58 (282)
308 cd03223 ABCD_peroxisomal_ALDP 98.0 1.1E-05 2.4E-10 72.6 5.9 48 5-57 1-52 (166)
309 PRK11300 livG leucine/isoleuci 98.0 8.5E-06 1.8E-10 78.6 5.5 58 2-64 3-64 (255)
310 PRK14261 phosphate ABC transpo 98.0 4.4E-06 9.6E-11 80.5 3.5 51 1-56 3-56 (253)
311 TIGR02857 CydD thiol reductant 98.0 6.4E-06 1.4E-10 88.1 5.0 49 4-57 320-373 (529)
312 COG4175 ProV ABC-type proline/ 98.0 3E-05 6.6E-10 74.7 8.9 141 25-166 47-229 (386)
313 PRK11701 phnK phosphonate C-P 98.0 3.8E-06 8.3E-11 81.2 2.9 52 1-57 3-57 (258)
314 COG1134 TagH ABC-type polysacc 98.0 7.6E-06 1.6E-10 76.3 4.7 129 14-148 40-182 (249)
315 PRK14253 phosphate ABC transpo 98.0 1.3E-05 2.8E-10 77.0 6.5 51 2-57 1-54 (249)
316 TIGR01193 bacteriocin_ABC ABC- 98.0 6.1E-06 1.3E-10 91.4 4.8 49 4-57 473-525 (708)
317 PRK14270 phosphate ABC transpo 98.0 4.9E-06 1.1E-10 80.1 3.5 51 1-56 1-54 (251)
318 TIGR03375 type_I_sec_LssB type 98.0 6.7E-06 1.5E-10 90.8 4.8 49 4-57 463-516 (694)
319 PHA03132 thymidine kinase; Pro 98.0 5.8E-05 1.3E-09 79.7 11.3 34 31-65 256-289 (580)
320 PRK14247 phosphate ABC transpo 98.0 5.6E-06 1.2E-10 79.6 3.5 50 3-57 2-54 (250)
321 TIGR03258 PhnT 2-aminoethylpho 98.0 1.4E-05 3.1E-10 80.9 6.6 49 4-57 5-56 (362)
322 PRK14241 phosphate transporter 97.9 5.5E-06 1.2E-10 80.1 3.5 52 1-57 1-55 (258)
323 PRK10247 putative ABC transpor 97.9 6.2E-06 1.3E-10 78.0 3.7 51 2-57 5-58 (225)
324 PRK11160 cysteine/glutathione 97.9 1.2E-05 2.6E-10 86.8 6.3 49 4-57 338-391 (574)
325 cd03289 ABCC_CFTR2 The CFTR su 97.9 1.2E-05 2.6E-10 78.4 5.7 56 5-65 3-63 (275)
326 TIGR03608 L_ocin_972_ABC putat 97.9 1.5E-05 3.2E-10 74.2 6.0 45 8-57 2-49 (206)
327 TIGR02203 MsbA_lipidA lipid A 97.9 1.1E-05 2.3E-10 87.1 5.8 49 4-57 330-383 (571)
328 cd03244 ABCC_MRP_domain2 Domai 97.9 1.3E-05 2.7E-10 75.6 5.5 48 5-57 3-55 (221)
329 PRK13539 cytochrome c biogenes 97.9 5.9E-06 1.3E-10 77.1 3.2 49 4-57 2-53 (207)
330 cd03214 ABC_Iron-Siderophores_ 97.9 6.2E-06 1.3E-10 75.2 3.2 54 6-64 1-58 (180)
331 TIGR00968 3a0106s01 sulfate AB 97.9 1.6E-05 3.5E-10 75.8 6.2 48 5-57 1-51 (237)
332 PRK09177 xanthine-guanine phos 97.9 5.8E-05 1.3E-09 67.0 9.2 87 313-408 33-121 (156)
333 PRK14272 phosphate ABC transpo 97.9 6.3E-06 1.4E-10 79.3 3.3 52 1-57 1-55 (252)
334 PRK11264 putative amino-acid A 97.9 6.7E-06 1.5E-10 79.0 3.4 50 3-57 2-54 (250)
335 PF14572 Pribosyl_synth: Phosp 97.9 2.1E-05 4.6E-10 70.6 6.1 55 359-415 78-134 (184)
336 COG1132 MdlB ABC-type multidru 97.9 1.4E-05 3.1E-10 86.1 6.1 56 4-64 328-388 (567)
337 PRK13811 orotate phosphoribosy 97.9 0.00012 2.5E-09 66.1 10.8 100 314-422 59-159 (170)
338 PF13189 Cytidylate_kin2: Cyti 97.9 7.7E-06 1.7E-10 74.5 3.2 30 34-66 1-30 (179)
339 PRK10895 lipopolysaccharide AB 97.9 8.4E-06 1.8E-10 77.9 3.6 51 2-57 1-54 (241)
340 COG0645 Predicted kinase [Gene 97.9 2.4E-05 5.3E-10 69.0 6.1 117 33-174 2-126 (170)
341 COG1119 ModF ABC-type molybden 97.9 1E-05 2.2E-10 75.5 3.8 52 1-57 28-82 (257)
342 PRK10790 putative multidrug tr 97.9 1.2E-05 2.6E-10 87.3 5.0 50 4-58 340-393 (592)
343 PRK14274 phosphate ABC transpo 97.9 9E-06 1.9E-10 78.6 3.5 51 2-57 10-63 (259)
344 COG1123 ATPase components of v 97.9 2.6E-05 5.6E-10 81.3 7.0 62 2-68 278-354 (539)
345 PRK13812 orotate phosphoribosy 97.9 0.00015 3.2E-09 65.7 11.1 101 314-423 61-163 (176)
346 TIGR03410 urea_trans_UrtE urea 97.9 1.6E-05 3.5E-10 75.4 5.1 55 5-64 1-59 (230)
347 PRK13644 cbiO cobalt transport 97.9 2E-05 4.4E-10 76.9 5.8 49 4-57 1-53 (274)
348 TIGR01277 thiQ thiamine ABC tr 97.9 3.1E-05 6.6E-10 72.6 6.8 48 5-57 1-49 (213)
349 PRK13633 cobalt transporter AT 97.9 7.6E-06 1.6E-10 80.1 2.8 52 1-57 1-61 (280)
350 TIGR00954 3a01203 Peroxysomal 97.9 2.9E-05 6.4E-10 85.0 7.6 49 4-57 451-503 (659)
351 PRK11124 artP arginine transpo 97.9 1E-05 2.2E-10 77.4 3.6 49 4-57 2-53 (242)
352 TIGR02633 xylG D-xylose ABC tr 97.9 3.1E-05 6.7E-10 82.2 7.5 49 4-57 1-52 (500)
353 cd03258 ABC_MetN_methionine_tr 97.9 9.2E-06 2E-10 77.2 3.1 49 4-57 1-56 (233)
354 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 97.9 1.9E-05 4.1E-10 74.7 5.2 48 5-57 23-73 (224)
355 TIGR01194 cyc_pep_trnsptr cycl 97.8 2.9E-05 6.3E-10 83.5 7.2 57 4-65 337-402 (555)
356 PRK13538 cytochrome c biogenes 97.8 8.9E-06 1.9E-10 75.7 2.8 49 4-57 1-52 (204)
357 TIGR02204 MsbA_rel ABC transpo 97.8 1.6E-05 3.5E-10 85.9 5.2 49 4-57 337-391 (576)
358 PRK14262 phosphate ABC transpo 97.8 1.5E-05 3.3E-10 76.6 4.3 50 3-57 2-54 (250)
359 PRK11614 livF leucine/isoleuci 97.8 1.1E-05 2.4E-10 76.9 3.3 50 3-57 4-56 (237)
360 COG1660 Predicted P-loop-conta 97.8 5.5E-05 1.2E-09 71.0 7.8 56 155-217 86-143 (286)
361 PTZ00145 phosphoribosylpyropho 97.8 0.00017 3.7E-09 73.6 12.0 65 356-424 327-394 (439)
362 PRK14250 phosphate ABC transpo 97.8 1.2E-05 2.5E-10 77.0 3.3 50 3-57 2-54 (241)
363 PRK10771 thiQ thiamine transpo 97.8 4.2E-05 9.2E-10 72.6 7.2 49 4-57 1-50 (232)
364 cd03264 ABC_drug_resistance_li 97.8 2.1E-05 4.6E-10 73.5 5.0 47 5-57 1-50 (211)
365 cd03300 ABC_PotA_N PotA is an 97.8 3.9E-05 8.3E-10 72.9 6.8 48 5-57 1-51 (232)
366 PRK13540 cytochrome c biogenes 97.8 1.1E-05 2.5E-10 74.7 3.1 49 4-57 1-52 (200)
367 TIGR01842 type_I_sec_PrtD type 97.8 2.4E-05 5.1E-10 84.0 5.9 49 4-57 316-369 (544)
368 COG4618 ArpD ABC-type protease 97.8 1.7E-05 3.7E-10 80.8 4.4 64 2-70 332-401 (580)
369 PRK14239 phosphate transporter 97.8 1.4E-05 3E-10 77.0 3.5 48 3-55 4-54 (252)
370 cd03260 ABC_PstB_phosphate_tra 97.8 1.2E-05 2.5E-10 76.2 3.0 47 5-56 1-50 (227)
371 PRK13545 tagH teichoic acids e 97.8 3.1E-05 6.7E-10 81.0 6.3 49 4-57 21-75 (549)
372 COG1040 ComFC Predicted amidop 97.8 1.3E-05 2.8E-10 75.5 3.2 127 273-406 93-224 (225)
373 PRK14235 phosphate transporter 97.8 1.3E-05 2.9E-10 77.9 3.3 50 3-57 18-70 (267)
374 PRK10619 histidine/lysine/argi 97.8 1.2E-05 2.6E-10 77.7 3.0 51 2-57 3-56 (257)
375 PRK07322 adenine phosphoribosy 97.8 8.4E-05 1.8E-09 67.6 8.4 89 314-407 55-161 (178)
376 PRK15134 microcin C ABC transp 97.8 3.6E-05 7.7E-10 82.3 6.9 50 3-57 4-60 (529)
377 TIGR00960 3a0501s02 Type II (G 97.8 1.1E-05 2.3E-10 75.8 2.6 49 4-57 1-54 (216)
378 PRK11247 ssuB aliphatic sulfon 97.8 1.1E-05 2.4E-10 77.8 2.7 50 3-57 11-63 (257)
379 COG4987 CydC ABC-type transpor 97.8 2.4E-05 5.2E-10 80.4 5.1 49 4-57 336-389 (573)
380 PRK14237 phosphate transporter 97.8 1.3E-05 2.9E-10 77.8 3.2 51 2-57 18-71 (267)
381 PRK06031 phosphoribosyltransfe 97.8 0.00021 4.5E-09 67.6 11.1 53 361-415 151-203 (233)
382 PRK14242 phosphate transporter 97.8 1.3E-05 2.9E-10 77.1 3.2 49 3-56 5-56 (253)
383 cd00071 GMPK Guanosine monopho 97.8 5.1E-05 1.1E-09 65.9 6.5 24 34-57 1-24 (137)
384 PRK14273 phosphate ABC transpo 97.8 1.6E-05 3.5E-10 76.6 3.7 50 3-57 6-58 (254)
385 PHA00729 NTP-binding motif con 97.8 0.0001 2.3E-09 68.9 8.9 110 31-174 16-141 (226)
386 cd03257 ABC_NikE_OppD_transpor 97.8 1.6E-05 3.5E-10 75.2 3.6 49 4-57 1-56 (228)
387 cd03294 ABC_Pro_Gly_Bertaine T 97.8 3.2E-05 7E-10 75.2 5.7 46 7-57 27-75 (269)
388 COG1129 MglA ABC-type sugar tr 97.8 0.00016 3.4E-09 74.9 10.9 50 3-57 7-59 (500)
389 TIGR00972 3a0107s01c2 phosphat 97.8 1.5E-05 3.2E-10 76.5 3.3 49 4-57 1-52 (247)
390 PRK13638 cbiO cobalt transport 97.8 1.1E-05 2.5E-10 78.5 2.5 49 4-57 1-52 (271)
391 PRK11022 dppD dipeptide transp 97.8 1.3E-05 2.9E-10 80.1 3.0 50 3-57 2-58 (326)
392 PRK13547 hmuV hemin importer A 97.8 1.2E-05 2.5E-10 78.4 2.5 49 4-57 1-52 (272)
393 PRK14248 phosphate ABC transpo 97.8 1.5E-05 3.3E-10 77.4 3.3 49 3-56 20-71 (268)
394 TIGR03269 met_CoM_red_A2 methy 97.8 4E-05 8.6E-10 81.8 6.8 47 5-56 1-50 (520)
395 cd03261 ABC_Org_Solvent_Resist 97.8 1.1E-05 2.3E-10 76.9 2.2 48 5-57 1-51 (235)
396 TIGR01978 sufC FeS assembly AT 97.8 1.6E-05 3.4E-10 76.1 3.3 47 5-56 1-50 (243)
397 PRK11231 fecE iron-dicitrate t 97.8 1.3E-05 2.9E-10 77.3 2.8 49 4-57 2-53 (255)
398 PRK14271 phosphate ABC transpo 97.8 3.2E-05 7E-10 75.5 5.5 50 3-57 20-72 (276)
399 PRK14240 phosphate transporter 97.8 1.7E-05 3.7E-10 76.3 3.4 49 3-56 2-53 (250)
400 cd03219 ABC_Mj1267_LivG_branch 97.8 1.3E-05 2.9E-10 76.2 2.7 48 5-57 1-51 (236)
401 PRK11831 putative ABC transpor 97.8 1.5E-05 3.2E-10 77.6 3.0 50 3-57 6-58 (269)
402 cd03298 ABC_ThiQ_thiamine_tran 97.8 7E-05 1.5E-09 70.0 7.5 47 5-57 1-49 (211)
403 PRK14245 phosphate ABC transpo 97.8 1.6E-05 3.5E-10 76.5 3.1 48 3-55 2-52 (250)
404 TIGR02323 CP_lyasePhnK phospho 97.8 1.8E-05 4E-10 76.1 3.5 50 3-57 2-54 (253)
405 TIGR01192 chvA glucan exporter 97.8 3.1E-05 6.7E-10 83.8 5.5 49 4-57 334-386 (585)
406 PRK10575 iron-hydroxamate tran 97.8 1.7E-05 3.7E-10 77.0 3.2 50 3-57 10-62 (265)
407 cd03262 ABC_HisP_GlnQ_permease 97.7 1.5E-05 3.3E-10 74.5 2.7 48 5-57 1-51 (213)
408 COG4615 PvdE ABC-type sideroph 97.7 9.5E-05 2.1E-09 73.3 8.2 50 4-58 322-375 (546)
409 PRK14238 phosphate transporter 97.7 2.6E-05 5.6E-10 76.0 4.4 50 3-57 23-75 (271)
410 PRK00091 miaA tRNA delta(2)-is 97.7 3E-05 6.4E-10 76.5 4.7 42 31-75 3-46 (307)
411 TIGR02315 ABC_phnC phosphonate 97.7 1.8E-05 3.8E-10 75.7 3.1 49 4-57 1-53 (243)
412 PRK14252 phosphate ABC transpo 97.7 5.3E-05 1.1E-09 73.5 6.4 50 3-57 15-67 (265)
413 PRK13543 cytochrome c biogenes 97.7 1.6E-05 3.5E-10 74.6 2.7 50 3-57 10-62 (214)
414 PRK09493 glnQ glutamine ABC tr 97.7 1.9E-05 4.2E-10 75.4 3.3 49 4-57 1-52 (240)
415 PRK10419 nikE nickel transport 97.7 2.1E-05 4.5E-10 76.5 3.5 51 2-57 1-63 (268)
416 PRK10908 cell division protein 97.7 2.1E-05 4.6E-10 74.2 3.4 49 4-57 1-53 (222)
417 COG4639 Predicted kinase [Gene 97.7 4.2E-05 9.1E-10 66.4 4.8 35 32-71 2-36 (168)
418 PRK09580 sufC cysteine desulfu 97.7 1.9E-05 4.2E-10 75.7 3.2 48 4-56 1-51 (248)
419 PRK15112 antimicrobial peptide 97.7 2E-05 4.3E-10 76.6 3.2 51 2-57 2-64 (267)
420 PRK14269 phosphate ABC transpo 97.7 1.9E-05 4.1E-10 75.8 3.0 48 4-56 2-52 (246)
421 CHL00131 ycf16 sulfate ABC tra 97.7 2.3E-05 4.9E-10 75.5 3.5 48 3-55 6-56 (252)
422 PRK09473 oppD oligopeptide tra 97.7 2.3E-05 5E-10 78.5 3.7 52 2-58 10-68 (330)
423 cd03299 ABC_ModC_like Archeal 97.7 5.6E-05 1.2E-09 72.0 6.1 48 5-57 1-50 (235)
424 TIGR02770 nickel_nikD nickel i 97.7 5E-05 1.1E-09 72.0 5.8 36 17-57 2-37 (230)
425 TIGR03411 urea_trans_UrtD urea 97.7 2.2E-05 4.8E-10 75.0 3.4 49 4-57 2-53 (242)
426 cd03256 ABC_PhnC_transporter A 97.7 2.1E-05 4.5E-10 75.1 3.1 48 5-57 1-52 (241)
427 TIGR01188 drrA daunorubicin re 97.7 4.5E-05 9.7E-10 75.5 5.6 39 14-57 6-44 (302)
428 PRK14266 phosphate ABC transpo 97.7 2.3E-05 5E-10 75.3 3.4 49 3-56 2-53 (250)
429 PRK14243 phosphate transporter 97.7 2.6E-05 5.7E-10 75.6 3.8 50 3-57 9-61 (264)
430 PRK10789 putative multidrug tr 97.7 3.5E-05 7.6E-10 83.2 5.0 49 4-57 313-366 (569)
431 PRK14246 phosphate ABC transpo 97.7 2E-05 4.4E-10 76.1 2.9 51 2-57 8-61 (257)
432 PRK09700 D-allose transporter 97.7 2.2E-05 4.8E-10 83.5 3.4 52 1-57 2-56 (510)
433 TIGR01189 ccmA heme ABC export 97.7 2.3E-05 4.9E-10 72.6 3.1 48 5-57 1-51 (198)
434 PRK14255 phosphate ABC transpo 97.7 2.4E-05 5.2E-10 75.3 3.4 49 3-56 4-55 (252)
435 COG4988 CydD ABC-type transpor 97.7 5E-05 1.1E-09 79.0 5.8 48 5-57 321-372 (559)
436 PRK14268 phosphate ABC transpo 97.7 2.3E-05 4.9E-10 75.8 3.1 50 3-57 11-63 (258)
437 cd00820 PEPCK_HprK Phosphoenol 97.7 3.7E-05 8E-10 63.3 3.8 46 14-69 2-47 (107)
438 TIGR02324 CP_lyasePhnL phospho 97.7 2.1E-05 4.6E-10 74.2 2.8 49 4-57 1-59 (224)
439 cd03292 ABC_FtsE_transporter F 97.7 1.8E-05 3.8E-10 74.2 2.2 48 5-57 1-52 (214)
440 PRK15093 antimicrobial peptide 97.7 2.2E-05 4.7E-10 78.8 3.0 50 3-57 2-58 (330)
441 cd03268 ABC_BcrA_bacitracin_re 97.7 2.3E-05 4.9E-10 73.2 2.9 48 5-57 1-51 (208)
442 TIGR03005 ectoine_ehuA ectoine 97.7 2.3E-05 5E-10 75.4 3.0 48 5-57 1-51 (252)
443 cd03231 ABC_CcmA_heme_exporter 97.7 2.4E-05 5.3E-10 72.6 3.0 48 5-57 1-51 (201)
444 PRK14236 phosphate transporter 97.7 2.6E-05 5.5E-10 76.1 3.2 50 3-57 24-76 (272)
445 KOG0055 Multidrug/pheromone ex 97.7 0.00012 2.5E-09 82.5 8.6 63 3-70 349-418 (1228)
446 COG4559 ABC-type hemin transpo 97.7 3.1E-05 6.8E-10 70.6 3.4 49 4-57 1-52 (259)
447 TIGR01846 type_I_sec_HlyB type 97.7 5.3E-05 1.2E-09 83.7 6.0 49 4-57 455-508 (694)
448 cd03235 ABC_Metallic_Cations A 97.7 2.5E-05 5.4E-10 73.2 2.9 47 6-57 1-50 (213)
449 PRK15056 manganese/iron transp 97.7 2.6E-05 5.7E-10 76.0 3.0 50 3-57 5-58 (272)
450 COG1926 Predicted phosphoribos 97.7 0.00017 3.6E-09 65.5 7.8 64 359-426 119-182 (220)
451 COG4778 PhnL ABC-type phosphon 97.7 4E-05 8.7E-10 67.5 3.7 65 1-70 1-77 (235)
452 PRK08558 adenine phosphoribosy 97.7 0.00045 9.8E-09 65.7 11.2 97 315-416 115-227 (238)
453 PRK11308 dppF dipeptide transp 97.7 2.5E-05 5.4E-10 78.1 2.8 50 3-57 4-66 (327)
454 PRK14265 phosphate ABC transpo 97.7 3.2E-05 6.9E-10 75.5 3.4 49 3-56 19-70 (274)
455 PRK14260 phosphate ABC transpo 97.6 3.2E-05 7E-10 74.8 3.3 50 3-57 6-58 (259)
456 PRK14258 phosphate ABC transpo 97.6 3E-05 6.5E-10 75.1 3.1 50 3-57 6-58 (261)
457 COG0856 Orotate phosphoribosyl 97.6 0.00018 4E-09 62.9 7.5 89 318-414 93-188 (203)
458 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.6 2.1E-05 4.6E-10 69.0 1.8 48 5-57 1-51 (144)
459 cd03234 ABCG_White The White s 97.6 3.3E-05 7.3E-10 73.0 3.3 51 2-57 1-58 (226)
460 TIGR03719 ABC_ABC_ChvD ATP-bin 97.6 0.0001 2.3E-09 79.2 7.5 50 3-57 321-373 (552)
461 cd03226 ABC_cobalt_CbiO_domain 97.6 2.5E-05 5.5E-10 72.7 2.3 47 6-57 1-51 (205)
462 PTZ00265 multidrug resistance 97.6 6.1E-05 1.3E-09 89.1 5.8 50 4-58 1165-1220(1466)
463 TIGR02769 nickel_nikE nickel i 97.6 3.2E-05 7E-10 75.1 3.0 49 4-57 2-62 (265)
464 PRK11819 putative ABC transpor 97.6 0.00011 2.5E-09 78.9 7.4 49 4-57 324-375 (556)
465 PLN02840 tRNA dimethylallyltra 97.6 6.8E-05 1.5E-09 76.4 5.3 44 27-73 16-61 (421)
466 PRK13541 cytochrome c biogenes 97.6 3E-05 6.5E-10 71.6 2.6 49 4-57 1-51 (195)
467 PRK14254 phosphate ABC transpo 97.6 3.2E-05 6.9E-10 75.9 2.9 50 3-57 38-90 (285)
468 cd03250 ABCC_MRP_domain1 Domai 97.6 3E-05 6.4E-10 72.2 2.5 48 5-57 1-56 (204)
469 TIGR01271 CFTR_protein cystic 97.6 7.5E-05 1.6E-09 88.8 6.4 56 4-64 1217-1277(1490)
470 PRK14264 phosphate ABC transpo 97.6 3.7E-05 8.1E-10 76.2 3.3 50 2-56 43-95 (305)
471 cd03248 ABCC_TAP TAP, the Tran 97.6 3.7E-05 8E-10 72.7 3.0 50 3-57 10-65 (226)
472 PRK10253 iron-enterobactin tra 97.6 3.1E-05 6.8E-10 75.2 2.5 50 3-57 6-58 (265)
473 PLN02297 ribose-phosphate pyro 97.6 0.00032 7E-09 69.4 9.7 57 357-415 223-281 (326)
474 COG0411 LivG ABC-type branched 97.6 3.4E-05 7.3E-10 72.0 2.5 63 2-69 2-68 (250)
475 PLN03232 ABC transporter C fam 97.6 4.6E-05 9.9E-10 90.7 4.3 49 4-57 1234-1287(1495)
476 TIGR03740 galliderm_ABC gallid 97.6 3.2E-05 6.9E-10 73.0 2.4 48 5-57 1-51 (223)
477 PLN02748 tRNA dimethylallyltra 97.6 9.1E-05 2E-09 76.8 5.8 46 26-74 16-63 (468)
478 KOG3062 RNA polymerase II elon 97.6 0.00048 1E-08 63.3 9.7 29 32-60 1-29 (281)
479 COG2236 Predicted phosphoribos 97.6 0.00023 5E-09 64.8 7.7 83 312-394 30-117 (192)
480 PRK13651 cobalt transporter AT 97.6 3.9E-05 8.5E-10 76.0 2.9 49 4-57 2-58 (305)
481 cd03254 ABCC_Glucan_exporter_l 97.6 3.9E-05 8.4E-10 72.7 2.7 48 5-57 3-54 (229)
482 PLN03130 ABC transporter C fam 97.6 0.00011 2.4E-09 87.8 7.0 131 4-146 614-773 (1622)
483 COG4136 ABC-type uncharacteriz 97.6 6.3E-05 1.4E-09 64.9 3.6 49 4-57 2-53 (213)
484 PRK11819 putative ABC transpor 97.6 3.6E-05 7.9E-10 82.8 2.7 51 2-57 4-58 (556)
485 TIGR03873 F420-0_ABC_ATP propo 97.6 3.4E-05 7.4E-10 74.4 2.3 48 5-57 2-52 (256)
486 COG4152 ABC-type uncharacteriz 97.6 0.00014 3.1E-09 67.7 6.2 50 4-58 2-54 (300)
487 PRK10535 macrolide transporter 97.6 0.00014 3E-09 79.6 7.3 52 1-57 1-59 (648)
488 KOG0056 Heavy metal exporter H 97.6 7.9E-05 1.7E-09 75.6 4.8 59 3-66 536-599 (790)
489 COG3840 ThiQ ABC-type thiamine 97.6 0.00027 5.8E-09 63.1 7.5 123 28-150 21-166 (231)
490 PLN03130 ABC transporter C fam 97.6 6E-05 1.3E-09 90.0 4.6 49 4-57 1237-1290(1622)
491 PRK13631 cbiO cobalt transport 97.6 3.9E-05 8.5E-10 76.5 2.6 51 2-57 19-77 (320)
492 smart00382 AAA ATPases associa 97.6 0.0004 8.7E-09 59.1 8.6 39 32-70 2-42 (148)
493 PRK13639 cbiO cobalt transport 97.6 3.6E-05 7.9E-10 75.1 2.3 49 4-57 1-53 (275)
494 PLN03232 ABC transporter C fam 97.6 7.5E-05 1.6E-09 88.9 5.3 131 4-146 614-773 (1495)
495 PRK03695 vitamin B12-transport 97.6 7.4E-05 1.6E-09 71.8 4.4 54 5-64 1-54 (248)
496 cd03251 ABCC_MsbA MsbA is an e 97.6 4E-05 8.7E-10 72.8 2.5 48 5-57 1-53 (234)
497 PRK13643 cbiO cobalt transport 97.6 3.5E-05 7.7E-10 75.7 2.2 49 4-57 1-57 (288)
498 cd03291 ABCC_CFTR1 The CFTR su 97.6 4E-05 8.7E-10 75.0 2.5 50 3-57 38-88 (282)
499 cd00267 ABC_ATPase ABC (ATP-bi 97.6 7.7E-05 1.7E-09 66.3 4.1 46 7-57 2-50 (157)
500 COG4181 Predicted ABC-type tra 97.6 0.0001 2.2E-09 65.1 4.7 47 4-55 6-59 (228)
No 1
>COG0035 Upp Uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=100.00 E-value=9.8e-69 Score=480.43 Aligned_cols=207 Identities=37% Similarity=0.602 Sum_probs=199.1
Q ss_pred cceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeec
Q 035513 242 SNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIR 320 (473)
Q Consensus 242 ~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilr 320 (473)
.++++++| |+++|++|+|||++|++.+||++++||+++|+|||++++|+++++|+||++ +++|..+. +++|+|||||
T Consensus 2 ~~v~vi~h-pli~~~lt~lRdk~t~~~~Fr~~~~ei~~lL~yEa~~~l~~e~~~ieTP~~-~~~~~~~~~~~i~~V~ILR 79 (210)
T COG0035 2 MNVYVIDH-PLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLG-PTEGVQIAGKKIVIVPILR 79 (210)
T ss_pred CceEEeCc-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHhCcCceeEEEEECCCc-ceeeeeecCCcEEEEEEee
Confidence 46788877 699999999999999999999999999999999999999999999999999 68888886 5599999999
Q ss_pred cCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEE
Q 035513 321 SGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIF 399 (473)
Q Consensus 321 aG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~ 399 (473)
||++|++|+.+++|+|++|||+++||++|++ ..||.|||++++++.|+|+|||+|||+|+++|++.|+++| .+++|++
T Consensus 80 AGl~m~~gl~~~~P~a~vG~ig~~Rdeet~~p~~yy~KLP~~~~~~~viv~DPMLATG~s~i~ai~~L~~~G-~~~~I~~ 158 (210)
T COG0035 80 AGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDIDERTVIVLDPMLATGGSAIAAIDLLKKRG-GPKNIKV 158 (210)
T ss_pred ccccHHHHHHHhCCcceEEEEEEEecCccCceehhHHhCCCcccCCeEEEECchhhccHhHHHHHHHHHHhC-CCceEEE
Confidence 9999999999999999999999999999985 8999999999999999999999999999999999999997 6799999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 400 LNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 400 ~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
+|++|+|+|++++.++||+|+||||+||++|||+|||+|||||||||+|||+
T Consensus 159 v~~vAapeGi~~v~~~~p~v~I~ta~iD~~Lne~gYIvPGLGDaGDR~fGt~ 210 (210)
T COG0035 159 VSLVAAPEGIKAVEKAHPDVEIYTAAIDEGLNEKGYIVPGLGDAGDRLFGTK 210 (210)
T ss_pred EEEEecHHHHHHHHHhCCCCeEEEEEeccccccCCCCccCCCcccccccCCC
Confidence 9999999999999999999999999999999999999999999999999985
No 2
>PF14681 UPRTase: Uracil phosphoribosyltransferase; PDB: 1V9S_B 1UPF_A 1UPU_D 1JLR_B 1BD4_A 1BD3_C 1JLS_D 1XTV_C 1XTU_H 3G6W_C ....
Probab=100.00 E-value=5e-63 Score=459.33 Aligned_cols=202 Identities=41% Similarity=0.765 Sum_probs=187.3
Q ss_pred ccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCC-CCCeeeeecCCCCceeeeeEec-ceeeEEEeeccCchhH
Q 035513 249 STFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGH-LPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRSGESME 326 (473)
Q Consensus 249 ~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~-l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilraG~~~~ 326 (473)
++|++++++|+|||++|++.+||++++||+++|+|||+++ +|+++.+|+||+|..+.|.... +++|+|||||||++|+
T Consensus 3 ~~p~~~~~lt~LRd~~t~~~~Fr~~~~rl~~lL~~eal~~~l~~~~~~v~Tp~g~~~~g~~~~~~~i~~V~IlRaG~~m~ 82 (207)
T PF14681_consen 3 QHPLLRHLLTILRDRNTSRAEFRRYLDRLGRLLAEEALADWLPYEEVEVETPLGHKYGGVILNEDKICIVPILRAGLPML 82 (207)
T ss_dssp B-HHHHHHHHHHHSTTS-HHHHHHHHHHHHHHHHHHHTTT-S-EEEEEEEESSSEEEEEEECSSGCEEEEEETTTHHHHH
T ss_pred CCHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHHhccccceeEEEEcCCCcEEEEEEeecccEEEEEEeCCcHHHH
Confidence 4589999999999999999999999999999999999997 9999999999999988887665 4999999999999999
Q ss_pred HHHHhhcCCceeeEEEEEEcCCCC-ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeC
Q 035513 327 NALRACCKGIKIGKILIHREGNSG-RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAA 405 (473)
Q Consensus 327 ~~~~~~~p~a~~g~i~~~r~~~~~-~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~ 405 (473)
+|+++++|+|++|||+++||++|. +..||.+||+++++++|||+|||+|||+|+++|++.|+++|+.+++|+++|++||
T Consensus 83 ~~~~~~~p~a~~g~i~i~r~~~t~~p~~~y~~LP~~i~~~~VillDpmlaTG~s~~~ai~~L~~~G~~~~~I~~v~~ias 162 (207)
T PF14681_consen 83 EGFREVFPDARVGHIGIQRDEETLEPVLYYNKLPEDIENRKVILLDPMLATGGSAIAAIEILKEHGVPEENIIIVSVIAS 162 (207)
T ss_dssp HHHHHHSTTSEEEEEEEEEETTTSSEEEEEEE--TTGTTSEEEEEESEESSSHHHHHHHHHHHHTTG-GGEEEEEEEEEE
T ss_pred HHHHHhCCCcceEEEEEEEcCCccceeeeHhhCCCCccCCEEEEEeccccchhhHHHHHHHHHHcCCCcceEEEEEEEec
Confidence 999999999999999999999986 4899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCC
Q 035513 406 PQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450 (473)
Q Consensus 406 ~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~ 450 (473)
++||+++.++||+|+||||+||++||++|||+||+||||||||||
T Consensus 163 ~~Gl~~l~~~~P~v~I~ta~iD~~L~~~~~i~PGlGD~GdR~fgT 207 (207)
T PF14681_consen 163 PEGLERLLKAFPDVRIYTAAIDPELNENGYIVPGLGDAGDRYFGT 207 (207)
T ss_dssp HHHHHHHHHHSTTSEEEEEEEESEEETTSEEESS-S-HHHHHHT-
T ss_pred HHHHHHHHHhCCCeEEEEEEEccccCCCCCccCCCCChHhcccCc
Confidence 999999999999999999999999999999999999999999997
No 3
>PLN02541 uracil phosphoribosyltransferase
Probab=100.00 E-value=5.6e-62 Score=456.27 Aligned_cols=207 Identities=24% Similarity=0.408 Sum_probs=194.0
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCC-CCCeeeeecCCCCceeeeeEec--ceeeEEEee
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGH-LPFTEKQIITPTGSVYTGVVFC--RRLCGISII 319 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~-l~~~~~~v~tp~~~~~~g~~~~--~~~~~v~il 319 (473)
..+++.++|++++++|+|||++|++.+||++++||++||+|||+++ +|+++++|+||+|. +.+..+. .++|+||||
T Consensus 32 ~~~~~~~~p~i~~~lt~LRd~~T~~~~Fr~~~~rl~~lL~~Ea~~~~lp~~~~~V~TP~g~-~~~~~~~~~~~i~~V~IL 110 (244)
T PLN02541 32 MLVFVPPHPLIKHWLSVLRNEQTPPPIFRSAMAELGRLLIYEASRDWLPTMTGEVQTPMGV-ADVEFIDPREPVAVVPIL 110 (244)
T ss_pred ceEEecCChHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhccCCccceEEECCCCe-EEEEeecCCCcEEEEeEe
Confidence 4455667799999999999999999999999999999999999876 99999999999995 4444444 459999999
Q ss_pred ccCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCC-CcEEEEEcccccccHHHHHHHHHHHhcCCCCCcE
Q 035513 320 RSGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADIS-SRHVLLLDPILASGNSAVKAISLILSKGVPESNI 397 (473)
Q Consensus 320 raG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~-~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i 397 (473)
|||++|++|+++++|++++|+++++||+.|.+ .+||.+||++++ ++.|+|+|||+|||+|+++|++.|+++|+++++|
T Consensus 111 RAGl~m~~g~~~~~P~a~vg~i~~~rd~~t~e~~~yy~kLP~~i~~~~~VlllDpmLATGgS~~~ai~~L~~~Gv~~~~I 190 (244)
T PLN02541 111 RAGLVLLEHASSVLPATKTYHLGFVRDEETLQPSMYLNKLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQI 190 (244)
T ss_pred CCcHhHHHHHHhhCCCCeeEEEEEEEcccccceEEeeccCchhcCCCCEEEEECcchhhhHHHHHHHHHHHHcCCCcccE
Confidence 99999999999999999999999999998875 899999999997 5799999999999999999999999999988999
Q ss_pred EEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCC
Q 035513 398 IFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450 (473)
Q Consensus 398 ~~~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~ 450 (473)
+++|++|||+||+++.++||+|+||||+||++|||+|||+|||||||||||||
T Consensus 191 ~~v~~ias~~Gl~~i~~~fP~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt 243 (244)
T PLN02541 191 RVVCAVAAPPALKKLSEKFPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243 (244)
T ss_pred EEEEEEECHHHHHHHHHHCcCCEEEEEEECccccCCCcCcCCCCCccccccCC
Confidence 99999999999999999999999999999999999999999999999999998
No 4
>KOG4203 consensus Armadillo/beta-Catenin/plakoglobin [Signal transduction mechanisms; Cytoskeleton]
Probab=100.00 E-value=1.1e-59 Score=481.49 Aligned_cols=423 Identities=64% Similarity=1.077 Sum_probs=400.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-------CCCEEEEecCCCCCCCCHHHH--hhccCccCCCCccccHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR-------DQRVVLVNQDSFYHSLTDEKL--QNLHDYNFDHPDAFDTELLL 98 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~-------~~~~~~is~D~~~~~~~~~~~--~~~~~~~f~~~~~~d~~~l~ 98 (473)
....+++|++.|.++|||||++..+.+.++ ...+..++.|.||+.++.... ...+.+.|++|++++.+.+.
T Consensus 40 ~~~~~~~igv~~~s~~Gk~~~~~~i~~~l~~~~~~~~~~~v~~ls~~~fY~~lt~~~~~~a~~~~~~f~~pda~~~~l~~ 119 (473)
T KOG4203|consen 40 EGKEPFVIGVAGGTASGKSTVCEKIVEQLGAIERDGRQPQVVLLSQDSFYKVLTSEELAKAQEGKYNFDHPDAFDFELLY 119 (473)
T ss_pred cCcceEEEEeecCcccCceeehHHHHHHhhhhhhccCCCeEEEeecHHHHHhhchHHHHHhhhccccccCCCCcchhhHH
Confidence 456899999999999999999999988877 567888999999998877663 44447999999999999999
Q ss_pred HHHHHhhcCCceecccccccccccccc-ccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcccccc
Q 035513 99 SDMEKLKHGQAVSIPDYDFKSHKRKQQ-SRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVER 177 (473)
Q Consensus 99 ~~l~~l~~g~~i~~p~~~~~~~~~~~~-~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~ 177 (473)
..++++.++..+..|.|++..+.+.+. ...+.+++++++||++.+++...+.+.+..+|++++.+.++.|+..|+...+
T Consensus 120 ~~~~~~~kg~~v~ip~y~~~~~~~~~~~~~~l~~~~~~ilegil~~yd~~~~~l~~~k~fvd~~~d~rla~ri~r~~~~~ 199 (473)
T KOG4203|consen 120 LTLKNLKKGKAVEIPVYDFVTHSRDEEKTIVVYPADVIILEGILAFYDERVRDLFTMKLFVDTDADVRLARRILRDIVER 199 (473)
T ss_pred HHHhcccccceeeceeeeeecccCCCCceEEecCCCceeehhHHHHhHHHHHHHhcceEEEecCcchhhHHHHhcchhhh
Confidence 999999999999999999999998654 4557788999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccccccccccccceeeccccceeeeee
Q 035513 178 GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMH 257 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~~~l~~~~~~v~v~~~~~~~~~~~ 257 (473)
|++.+.+..+|.++.+|.|+.|+.|.+..||++|...+++...++.+.+.+...+..++.+.++.++..++.++++++++
T Consensus 200 g~~l~~i~~q~~~f~kp~~~~~i~p~~~~ad~ii~~~~~n~vai~l~~~~i~~~L~~~~~~~l~~~~~~l~~t~~i~~~~ 279 (473)
T KOG4203|consen 200 GRDLESILTQYSTFVKPAFEEFILPTKKYADVIIPRGGDNDVAIDLIVQHILSILAEKSYVRLYNNVLSLPDTNQIKGKL 279 (473)
T ss_pred cccHHHHHHHHHhhcCchHHHHhhHHHHhhhheeeccccccccceeeehhhhhhhhccccccccccceecCCccccCCce
Confidence 99999999999999999999999999999999999998899999999999999999998889999999999999999999
Q ss_pred eeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCCce
Q 035513 258 TLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKGIK 337 (473)
Q Consensus 258 t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~a~ 337 (473)
|.+||+.|+..+|.++.++++|++.++++.++|+.+..+.||.+..+.|..+..++|+|+|+|+|+.|+.+++..+++.+
T Consensus 280 t~~~~~~Ts~~~~~~~~~~~vrl~l~~~~~~~p~~~~~i~~~~~~~~~~~~~~~~i~gv~i~r~g~~~~~alr~~~~~vr 359 (473)
T KOG4203|consen 280 TLLRDHTTSRHPFSFYSDHLVRLVLEHGLGHLPYTEKRIVTPRGLAYSGVNFCKQICGVSIPRSGESMETALRAACKGVR 359 (473)
T ss_pred eEeecCCcCCCCHHHHHHHHHHHHhhcccCcccceeeeEecccccchhcccccchhccCCCCcchhHHHHHHHHHcCCce
Confidence 99999999999999999999999999999999999999999999999999888999999999999999999999999999
Q ss_pred eeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhC
Q 035513 338 IGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRF 416 (473)
Q Consensus 338 ~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~ 416 (473)
+|+++++|++.++. .++|.+||++++.. |+++||+++||+++.+|++.|.++|+++++|.+++++++++|+.+++.+|
T Consensus 360 i~~il~qr~~~t~~~~l~~~~lP~~is~~-V~ll~p~~~tg~~~~~a~~~ll~~gv~~~~i~~~~ll~~~~~~~~~~~~f 438 (473)
T KOG4203|consen 360 IGKILIQRDEETGEPELHYEKLPKDISDR-VLLLDPVLATGNSAMMAIILLLDHGVPEENIIFLNLLAAPQGIHEVAYAF 438 (473)
T ss_pred eeeeEeechhhccchhhhhhhCccccccc-eeeecchhhcchhHHHHHHHHHhCCCcHHHhHHHHHHhhhhhhhHHHHhc
Confidence 99999999999875 89999999999888 99999999999999999999999999999999999999999999999999
Q ss_pred CCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 417 PKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 417 p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
|.+++|++++|+.+|+++|++||+|||||||||+.
T Consensus 439 ~~v~~v~~~~d~~~~~~~~~~pg~g~~~dryfg~~ 473 (473)
T KOG4203|consen 439 PKVKIVTSQIDKLLNEKRYVVPGLGNFGDRYFGTD 473 (473)
T ss_pred ccceeehhhhcccccccceECcccccchhhccCCC
Confidence 99999999999999999999999999999999983
No 5
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=100.00 E-value=1e-57 Score=423.83 Aligned_cols=205 Identities=33% Similarity=0.535 Sum_probs=194.4
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeecc
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRS 321 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilra 321 (473)
++|+++| |++++++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+|. +.|..+. +++|+|||||+
T Consensus 1 ~v~~~~~-p~~~~~lt~lRd~~t~~~~Fr~~~~rl~~~l~~ea~~~l~~~~~~v~tp~g~-~~~~~~~~~~i~~V~ILrg 78 (207)
T TIGR01091 1 MVVVIEH-PLIKHKLTLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGE-TEGGRILGKKIVLVPILRA 78 (207)
T ss_pred CeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhccCCceeEEEECCCCc-EEEeEecCCcEEEEEEeCC
Confidence 5788875 8999999999999999999999999999999999999999999999999997 4555554 67999999999
Q ss_pred CchhHHHHHhhcCCceeeEEEEEEcCCCC-ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEE
Q 035513 322 GESMENALRACCKGIKIGKILIHREGNSG-RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400 (473)
Q Consensus 322 G~~~~~~~~~~~p~a~~g~i~~~r~~~~~-~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~ 400 (473)
|++|++++++++|.+++|+++++|++.+. +..+|.++|+++++++|+|+|||+|||+|+.+|++.|+++|+ ++|+++
T Consensus 79 g~~~~~~l~~~l~~~~v~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~v~ 156 (207)
T TIGR01091 79 GLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLATGGTMIAALDLLKKRGA--KKIKVL 156 (207)
T ss_pred cHHHHHHHHHhCCcCceeEEEEEeCCCCCCCEEEEecCCCCCCCCEEEEECCCccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 99999999999999999999999987765 589999999999999999999999999999999999999998 679999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 401 NLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 401 ~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
|++++++|++++.++||+|+|||++||++|||+|||+||+||||||||||+
T Consensus 157 ~ll~~~~gl~~l~~~~p~v~i~~~~id~~l~~~~yivPGlGd~Gdr~fgt~ 207 (207)
T TIGR01091 157 SIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYIVPGLGDAGDRAFGTK 207 (207)
T ss_pred EEecCHHHHHHHHHHCCCCEEEEEEECCCccCCccCcCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999984
No 6
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=100.00 E-value=2.7e-56 Score=415.25 Aligned_cols=205 Identities=37% Similarity=0.591 Sum_probs=196.5
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeecc
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRS 321 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilra 321 (473)
++|++++ |++++++|+|||++|++.+||++++||+++|+|||++++|+++.+|+||+| .+.|..+. +++|+|+|+|+
T Consensus 3 ~v~~~~~-p~~~~~lt~lRd~~t~~~~fr~~~~rl~~~l~~eal~~l~~~~~~v~tp~g-~~~g~~~~~~~~vvV~Ilrg 80 (209)
T PRK00129 3 KVHVVDH-PLIQHKLTLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLG-KTTGKRIAGKKLVIVPILRA 80 (209)
T ss_pred ceEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHhcccceeEEEEECCCC-cEEEEEecCCeEEEEEEeCC
Confidence 6888875 899999999999999999999999999999999999999999999999999 68998886 68999999999
Q ss_pred CchhHHHHHhhcCCceeeEEEEEEcCCCC-ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEE
Q 035513 322 GESMENALRACCKGIKIGKILIHREGNSG-RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400 (473)
Q Consensus 322 G~~~~~~~~~~~p~a~~g~i~~~r~~~~~-~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~ 400 (473)
|++|++++.+.+|.+++|+++++|++.+. +..+|.++|.++++++|||+|||++||+|+++|++.|+++|+ ++|+++
T Consensus 81 G~~~~~~l~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~laTG~Tl~~ai~~L~~~G~--~~I~~~ 158 (209)
T PRK00129 81 GLGMVDGVLKLIPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDPMLATGGSAIAAIDLLKKRGA--KNIKVL 158 (209)
T ss_pred CHHHHHHHHHhCCcCeeeeEEEEeCCCCCCCEEEEeeCCCcCCCCEEEEECCcccchHHHHHHHHHHHHcCC--CEEEEE
Confidence 99999999999999999999999987764 578899999999999999999999999999999999999996 899999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 401 NLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 401 ~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
|++++++|++++.++||+++||||+||++||++|||+||+||||||||||+
T Consensus 159 ~ll~~~~gl~~l~~~~p~v~i~~~~iD~~l~~~~yi~PGlGd~Gdr~fgt~ 209 (209)
T PRK00129 159 CLVAAPEGIKALEEAHPDVEIYTAAIDEKLNEHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_pred EEecCHHHHHHHHHHCCCcEEEEEeecCCcCCCCcCCCCCCCccccccCCC
Confidence 999999999999999999999999999999999999999999999999984
No 7
>KOG1017 consensus Predicted uracil phosphoribosyltransferase [General function prediction only]
Probab=100.00 E-value=1.2e-43 Score=308.71 Aligned_cols=204 Identities=47% Similarity=0.850 Sum_probs=193.5
Q ss_pred ccccceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEe
Q 035513 239 KIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISI 318 (473)
Q Consensus 239 ~~~~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~i 318 (473)
+..++++.++-..++..++|++||++|+..||.|++|||.|++++|.+++||+.+++|+||.|..|+|++++..-|+|||
T Consensus 63 ~~G~~lkll~~n~q~~el~ti~Rdkst~rsDF~F~ADRLiRLViEE~LNqLPytec~VtTPTG~kYEGikf~~GNCGVSi 142 (267)
T KOG1017|consen 63 EYGSNLKLLECNSQVAELLTILRDKSTNRSDFVFNADRLIRLVIEECLNQLPYTECTVTTPTGFKYEGIKFNRGNCGVSI 142 (267)
T ss_pred HhhcccchhhhHHHHHHHHHHHhhccCcccceeecHHHHHHHHHHHHhhcCCccceeeecCCcceeeceeecCCCcceEE
Confidence 44567777777778999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eccCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcE
Q 035513 319 IRSGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNI 397 (473)
Q Consensus 319 lraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i 397 (473)
+|+|++|++|+++++...++|+|++..|..|.+ +++|.++|+||..+.|+|+.|++.||+|+++|+++|+++||++++|
T Consensus 143 ~RSGEAMEqgLRdCCRsIRIGKILi~sd~~t~~akV~YArfppDI~sR~VLLmYPi~stGnTV~~Av~VL~EhgVp~s~I 222 (267)
T KOG1017|consen 143 CRSGEAMEQGLRDCCRSIRIGKILIGSDQNTHEAKVLYARFPPDITSRRVLLMYPIISTGNTVCKAVEVLKEHGVPDSNI 222 (267)
T ss_pred EechHHHHHHHHHHHHHheeeeEEeccccccceeeEEEEecCCcccceeEEEEeeeecCCccHHHHHHHHHHcCCCcccE
Confidence 999999999999999999999999999999876 8999999999999999999999999999999999999999999999
Q ss_pred EEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 398 IFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 398 ~~~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
++++++++|-|++.+.++||.++|+|..+.+.-.. .||..||||+
T Consensus 223 iL~sLF~tP~gak~i~~~fP~itiltseihpvaPn---------HFgqkYFGtd 267 (267)
T KOG1017|consen 223 ILVSLFITPTGAKNITRKFPYITILTSEIHPVAPN---------HFGQKYFGTD 267 (267)
T ss_pred EEEEeeecchhhHHHHHhCCeEEEEeecceecCcc---------cccchhcCCC
Confidence 99999999999999999999999999999886544 4699999984
No 8
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=6.4e-35 Score=266.44 Aligned_cols=205 Identities=48% Similarity=0.888 Sum_probs=189.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
.++++|||+|+|||||||+|+.|.+.++...+.+++.|+||+.......+..+.++|++|+++|++++.+.|..|++|+.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~~g~~ 85 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLKQGKP 85 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHHcCCc
Confidence 55699999999999999999999999996678999999999987777778888999999999999999999999999999
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHH
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYA 189 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~ 189 (473)
+..|.|++..+.+........+.++||+||++++++..+++.+|++|||++|.++|+.|+++||..+||++.+.++++|.
T Consensus 86 v~~P~yd~~~~~r~~~~i~~~p~~VVIvEGi~~l~d~~lr~~~d~kIfvdtd~D~RliRri~RD~~~rg~~~e~vi~qy~ 165 (218)
T COG0572 86 VDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLYDERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYV 165 (218)
T ss_pred ccccccchhcccccCCccccCCCcEEEEecccccccHHHHhhcCEEEEEeCCccHHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999998766677889999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecccc
Q 035513 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 190 ~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~ 234 (473)
...+|+|+.|+.|.++.||++|+.+..+..+++.+...|...+.+
T Consensus 166 ~~vkp~~~~fIeptk~~ADiiip~~~~n~vav~~l~~~I~~~~~~ 210 (218)
T COG0572 166 KTVRPMYEQFIEPTKKYADIIIPSGGKNEVAVDLLQAKIASSLSE 210 (218)
T ss_pred HhhChhhhhccCcccccceEEeecCCcceeehhHHHHHHHHHhhh
Confidence 999999999999999999999999888887777766666654444
No 9
>PTZ00301 uridine kinase; Provisional
Probab=99.97 E-value=7.1e-31 Score=243.88 Aligned_cols=202 Identities=36% Similarity=0.637 Sum_probs=176.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC----CCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR----DQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~----~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
-++|||+|+|||||||+|+.|++.+. ...+.++++|+||+..........+.+.|++|+++|++.+.+.+..+++|
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~l~~L~~g 82 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYRDQSNIPESERAYTNYDHPKSLEHDLLTTHLRELKSG 82 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCccCcccCCHHHhcCCCCCChhhhCHHHHHHHHHHHHcC
Confidence 37999999999999999999987763 22356889999997654333333456789999999999999999999999
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
+.+..|.|++..+.+........+.+++|+||+++++.+.+.+.+|+.||++++.++++.|+.+|+..++|++.+.++.+
T Consensus 83 ~~i~~P~yd~~~~~~~~~~~~i~p~~ViIvEGi~~l~~~~l~~l~D~~ifvd~~~d~~~~Rr~~Rd~~~rG~~~e~v~~~ 162 (210)
T PTZ00301 83 KTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAELRNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQ 162 (210)
T ss_pred CcccCCCcccccCCcCCceEEeCCCcEEEEechhhhCCHHHHHhCCEEEEEeCChhHHHHHHHhhhHHhcCCCHHHHHHH
Confidence 99999999999988776555567789999999999988999999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccc
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~ 233 (473)
|.....+.+..|+.|++..||+||.++.+++.++..+.+.|...++
T Consensus 163 ~~~~v~~~~~~~I~p~k~~ADiIi~~~~~~~~~~~~~~~~~~~~~~ 208 (210)
T PTZ00301 163 YEATVRPMYYAYVEPSKVYADIIVPSWKDNSVAVGVLRAKLNHDLE 208 (210)
T ss_pred HHHhhcccHHHHcCccccCCcEEEcCCCcchHHHHHHHHHHHHHcc
Confidence 9999999999999999999999999998898888888777766554
No 10
>PRK05480 uridine/cytidine kinase; Provisional
Probab=99.95 E-value=8.4e-28 Score=225.18 Aligned_cols=206 Identities=49% Similarity=0.843 Sum_probs=177.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
+++++.+|+|+|+|||||||+++.|++.++...+.++++|+|++..............|+.|++++++.+.+.+..+..+
T Consensus 2 ~~~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~ 81 (209)
T PRK05480 2 MMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKTNYDHPDAFDHDLLIEHLKALKAG 81 (209)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccccCcccCCHHHhcccCccCcccccHHHHHHHHHHHHcC
Confidence 55788999999999999999999999999655688999999997554333333445668889999999999999999999
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
..+..|.|++..+.+..........+++|+||++++..+.+.+.+|++|||++|.+++++|+++|+...+|.+.++....
T Consensus 82 ~~v~~p~~d~~~~~~~~~~~~~~~~~~vivEg~~l~~~~~~~~~~d~~I~v~~~~~~~~~R~~~Rd~~~rg~~~e~~~~~ 161 (209)
T PRK05480 82 KAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLLEDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQ 161 (209)
T ss_pred CccccCcccccccccCCCeEEeCCCCEEEEEeehhcCchhHhhhhceeEEEeCChhHHHHHHHhhcchhcCCCHHHHHHH
Confidence 99999999999887765444456678999999999876788899999999999999999999999988889999999999
Q ss_pred HHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccc
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~ 233 (473)
|.....+.|..++.+.++.||+||+++++|+..++.+.+.|...+.
T Consensus 162 ~~~~~~~~~~~~i~~~~~~AD~vI~~~~~~~~~~~~l~~~i~~~~~ 207 (209)
T PRK05480 162 YLSTVRPMHLQFIEPSKRYADIIIPEGGKNRVAIDILKAKIRQLLE 207 (209)
T ss_pred HHHhhhhhHHhhccHhhcceeEEecCCCcchHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999987788888888877775543
No 11
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=99.95 E-value=2.3e-28 Score=226.15 Aligned_cols=183 Identities=45% Similarity=0.792 Sum_probs=155.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCC------EEEEecCCCCCCCCHHHHhh--ccCccCCCCccccHHHHHHHHHHhh
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQR------VVLVNQDSFYHSLTDEKLQN--LHDYNFDHPDAFDTELLLSDMEKLK 105 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~------~~~is~D~~~~~~~~~~~~~--~~~~~f~~~~~~d~~~l~~~l~~l~ 105 (473)
+|+|+|+|||||||+|+.|+..++..+ ..+++.|+|+.......... ...+.|++|+++|++.+.+.+..++
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L~ 80 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSLDDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKALK 80 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEGGGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEeecccccccchhhHhhccccccCCCCccccCHHHHHHHHHHHh
Confidence 699999999999999999999998533 56888999985443322222 2356788999999999999999999
Q ss_pred cCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHH
Q 035513 106 HGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~ 185 (473)
+|+.+..|.|++..+.+..+.....+.+++|+||+++++.+.+++.+|++|||+++.+++++|+++||..++|++.++++
T Consensus 81 ~g~~i~~p~yd~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~l~~l~D~~ifld~~~~~~l~Rri~RD~~~rG~~~~~~~ 160 (194)
T PF00485_consen 81 NGGSIEIPIYDFSTGDRDPWIIIISPSDIVIVEGIYALYDEELRDLFDLKIFLDADEDLRLERRIQRDVAERGRSPEEVI 160 (194)
T ss_dssp TTSCEEEEEEETTTTEEEEEEEEEES-SEEEEEETTTTSSHCHGGG-SEEEEEEE-HHHHHHHHHHHHHHHS-S-HHHHH
T ss_pred CCCcccccccccccccceeeeeecCCCCEEEEcccceeeeeeecccceeEEEecccHHHHHHHHhhhhccccCCcceeEE
Confidence 99999999999999988775555667899999999999988899999999999999999999999999999999999999
Q ss_pred HHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
++|. ..++.|..|+.|++..||+||++...|
T Consensus 161 ~~~~-~~~~~~~~~I~p~~~~ADivi~~~~~~ 191 (194)
T PF00485_consen 161 AQYE-RVRPGYERYIEPQKERADIVIPSGPTN 191 (194)
T ss_dssp HHHH-THHHHHHHCTGGGGGG-SEEEESCTSS
T ss_pred EEee-cCChhhhhheeccccccEEEECCCCCc
Confidence 9999 788999999999999999999977555
No 12
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.95 E-value=7.2e-27 Score=220.00 Aligned_cols=177 Identities=24% Similarity=0.277 Sum_probs=151.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCCCCCCHHHHh------hccCccCCC--CccccHHHHHHHHHH
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQ------NLHDYNFDH--PDAFDTELLLSDMEK 103 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~~~~~~~~~~------~~~~~~f~~--~~~~d~~~l~~~l~~ 103 (473)
+|+|+|+|||||||+++.|++.++.. .+.+++.|+||+ +...+.+ .....+|++ |+++|+++|.+.+..
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr-~~r~~~~~~~~~a~~~~~nfdHf~PeAnd~dlL~~~l~~ 79 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR-YERMEMKMAIAEALDAGRNFSHFGPEANLFDLLEELFRT 79 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc-CCchhHHHHHHHHhhcCCCCCCCCcccccHHHHHHHHHH
Confidence 58999999999999999999988743 488999999998 3333221 224478888 999999999999999
Q ss_pred hhcCCceecccccccc----------ccccccccccCCCcEEEEecccc---cCChhhhhccCeEEEEecChhHHHHHhh
Q 035513 104 LKHGQAVSIPDYDFKS----------HKRKQQSRLINPSDVFILEGILV---LHDPRVRDLMSMKIFVDTDSDVRLSRRI 170 (473)
Q Consensus 104 l~~g~~i~~p~~~~~~----------~~~~~~~~~~~~~~viIlEG~~~---l~~~~~~~~~Dl~I~L~~~~e~~~~R~~ 170 (473)
+++|+.+..|.|++.. +.+..+.....+.+++++||++. +.+..+++.+|++||++++.++++.|++
T Consensus 80 L~~g~~i~~p~Y~h~~~~~~~~~~~~gtft~~~~~~~p~dvIivEGLhg~~~~~~~~lr~~~DlkIfVd~~~dlr~irRI 159 (277)
T cd02029 80 YGETGRGRSRYYLHSDEEAAPFNQEPGTFTPWEDLPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKI 159 (277)
T ss_pred HHcCCCcccceeeccccccccccCCCCccCCcccccCCCcEEEECCCCcccccccHHHHHhCCeEEEecCcHHHHHHHHH
Confidence 9999999999997743 22333333356899999999984 4457899999999999999999999999
Q ss_pred hccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecc
Q 035513 171 QRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIP 212 (473)
Q Consensus 171 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 212 (473)
+||..+||++.+.+.++|..++ |.|..|+.|+.+.+|+++.
T Consensus 160 ~RD~~ERGrs~EsVi~qilrrm-pdy~~yI~PQ~~~tDI~fq 200 (277)
T cd02029 160 HRDTAERGYSAEAVMDTILRRM-PDYINYICPQFSRTDINFQ 200 (277)
T ss_pred HhhhHhhCCCHHHHHHHHHHhC-chHHhhCCcccccCcEEEe
Confidence 9999999999999999999998 9999999999999999985
No 13
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=99.94 E-value=6.4e-26 Score=212.01 Aligned_cols=203 Identities=45% Similarity=0.840 Sum_probs=173.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
-++++.+|+|+|++||||||+++.|+..++...+.++++|+|+.............+.|+.|+.++.+.+.+.+..+..+
T Consensus 2 ~~~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~l~~g 81 (207)
T TIGR00235 2 DKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNFDHPDAFDNDLLYEHLKNLKNG 81 (207)
T ss_pred CCCCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEecccccccChhhCCHHHhcCCCCCCccHhHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999988754578999999986543333334456678889999999999999999999
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
+.+.+|.|++..+.+........+..++|+||.+++.++.+.+.+|++|||+++.++++.|+++|+...++++.+....+
T Consensus 82 ~~v~~p~yd~~~~~~~~~~~~~~~~~~vIieG~~~~~~~~~~~~~d~~I~v~~~~~~~l~R~~~R~~~~rg~~~~~~~~~ 161 (207)
T TIGR00235 82 SPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDERLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQ 161 (207)
T ss_pred CCEecccceeecCCCCCceEEeCCCCEEEEEehhhhchHhHHHhCCEEEEEECChhHHHHHHHHHHHHhhCCCHHHHHHH
Confidence 99999999998777654444456789999999999887778889999999999999999999999988889999999999
Q ss_pred HHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
|....++.|..++.+.+..||+||+++++++..+..+.+.|+.
T Consensus 162 ~~~~~~~~~~~~i~~~~~~Ad~vi~~~~~~~~~~~~~~~~~~~ 204 (207)
T TIGR00235 162 YRKTVRPMYEQFVEPTKQYADLIIPEGGRNEVAINVLDTKIKH 204 (207)
T ss_pred HHHhhhhhHHHhCcccccccEEEEcCCCCchHHHHHHHHHHHH
Confidence 9998899999999999999999999888888888777666553
No 14
>PRK15453 phosphoribulokinase; Provisional
Probab=99.93 E-value=8.2e-25 Score=207.77 Aligned_cols=183 Identities=22% Similarity=0.258 Sum_probs=149.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCC-CCCHHHH----hhccCccCCC--CccccHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYH-SLTDEKL----QNLHDYNFDH--PDAFDTELLLS 99 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~-~~~~~~~----~~~~~~~f~~--~~~~d~~~l~~ 99 (473)
.+++.+|+|+|.|||||||+++.|++.++. .++.+++.|+||+ ....... +.....+|++ |+++|+++|.+
T Consensus 2 s~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ydr~~~~~~~~~~~r~g~nfdhf~PdAnd~dlL~~ 81 (290)
T PRK15453 2 SAKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHRYTRPEMKAAIAKARAAGRHFSHFGPEANLFDELEQ 81 (290)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccccChhhHhhhhHHHHhcCCCCCCCCCCcccHHHHHH
Confidence 456789999999999999999999998864 3478999999996 2222111 1222347888 99999999999
Q ss_pred HHHHhhcCCceecccccccc-----ccccc-----cccccCCCcEEEEecccccCC---hhhhhccCeEEEEecChhHHH
Q 035513 100 DMEKLKHGQAVSIPDYDFKS-----HKRKQ-----QSRLINPSDVFILEGILVLHD---PRVRDLMSMKIFVDTDSDVRL 166 (473)
Q Consensus 100 ~l~~l~~g~~i~~p~~~~~~-----~~~~~-----~~~~~~~~~viIlEG~~~l~~---~~~~~~~Dl~I~L~~~~e~~~ 166 (473)
.+..+++++.+..|.|++.. +.+.. +.....+.+++++||++.++. ..++..+|++|||+++.++++
T Consensus 82 ~l~~l~~~~~g~~~~Y~h~f~~a~~~~~~~gtft~~e~i~~p~dvIivEGLh~~~~~~~~~lr~~~DlkIfVdp~~dlr~ 161 (290)
T PRK15453 82 LFREYGETGTGKTRKYLHTDDEAVPYNQVPGTFTPWEPLPEGTDLLFYEGLHGGVVTDQVDVAQHVDLLIGVVPIVNLEW 161 (290)
T ss_pred HHHHHhcCCCcceeeccccccccccCCCCCCccCCceEecCCCcEEEEeccccccccccHHHHHhCCeeEeeCCcHhHHH
Confidence 99999998888888776432 33221 112235689999999988743 568999999999999999999
Q ss_pred HHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecc
Q 035513 167 SRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIP 212 (473)
Q Consensus 167 ~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~ 212 (473)
.|+++||..+||++.+.+.++|..+. |.|..||.|+.+++|+++.
T Consensus 162 irRI~RD~~ERGrs~EsVi~qilrrm-Pdy~~yI~PQ~~~tdInfq 206 (290)
T PRK15453 162 IQKIHRDTSERGYSREAVMDTILRRM-PDYINYITPQFSRTHINFQ 206 (290)
T ss_pred HHHHHhhhHhhCCCHHHHHHHHHHhC-ChHhhhCCCCcccCcEEEE
Confidence 99999999999999999999999996 9999999999999999774
No 15
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=99.93 E-value=5.8e-25 Score=204.21 Aligned_cols=196 Identities=60% Similarity=1.018 Sum_probs=167.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|+|+|++||||||+++.|+..++...+.++++|+|++..............+..|..++++.+.+.+..+..++.+..|
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~p 80 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFDFDLLISHLQDLKNGKSVEIP 80 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecccccccccccHHHhccCCCCCCCcccHHHHHHHHHHHHCCCCEecc
Confidence 58999999999999999999998555689999999997766554444445567788899999999999999999999999
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVK 193 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 193 (473)
.|++..+.+........+.+++|+||++.+..+.+.+.+|++|||++|.+++++|++.|+..+++.+.+.....|.....
T Consensus 81 ~~d~~~~~~~~~~~~i~~~~~vI~eg~~~~~~~~~~~~~d~~i~v~~~~~~~~~R~~~Rd~~~rg~~~~~~~~~~~~~~~ 160 (198)
T cd02023 81 VYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMDLKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVK 160 (198)
T ss_pred ccccccCcccCCceecCCCCEEEEechhhccchhHHhhcCeEEEEECChhHHHHHHHHHHhhhcCCCHHHHHHHHHHhhh
Confidence 99999888764444566789999999999887778889999999999999999999999987888888888899999999
Q ss_pred cchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 194 PSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 194 ~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+.|..++.+++..||+||+++.++...+..+.+.++
T Consensus 161 ~~~~~~i~~~~~~aD~ii~~~~~~~~~~~~~~~~~~ 196 (198)
T cd02023 161 PMHEQFIEPTKRYADVIIPRGGDNHVAIDLIVQHIK 196 (198)
T ss_pred hhHHHhCccchhceeEEECCCCCccHHHHHHHHHHh
Confidence 999999999999999999988676677776665543
No 16
>PLN02348 phosphoribulokinase
Probab=99.93 E-value=1.3e-24 Score=215.53 Aligned_cols=183 Identities=28% Similarity=0.501 Sum_probs=154.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-----------------CCEEEEecCCCCCCCCHHHHhhccCccCCCCc
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD-----------------QRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPD 90 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-----------------~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~ 90 (473)
..+++.+|||+|+|||||||+|+.|++.++. ..+.++++|+||.. ....+... .+.+.+|.
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg~~~~~~~~~~~~~~~l~~~~~~VI~lDDYh~~-dr~~r~~~-g~t~ldP~ 122 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLISDTTTVICLDDYHSL-DRTGRKEK-GVTALDPR 122 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhccCCCccccccccccccCceEEEEcccccCC-ChhhHhhc-CCccCCcc
Confidence 3467899999999999999999999999863 23678999999853 22223322 23356689
Q ss_pred cccHHHHHHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhh
Q 035513 91 AFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRI 170 (473)
Q Consensus 91 ~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~ 170 (473)
++|++.+.+.+..|++|+.+..|.|++..+..... ..+.+.+++|+||++.++.+.+++.+|++|||+++.++++.|++
T Consensus 123 a~dfDll~~~L~~Lk~G~~I~~PiYDh~tg~~~~~-e~I~p~~VVIVEGlh~L~~e~lr~l~D~~IyVd~~~dvrl~RRI 201 (395)
T PLN02348 123 ANNFDLMYEQVKALKEGKAVEKPIYNHVTGLLDPP-ELIEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKI 201 (395)
T ss_pred cccHHHHHHHHHHHHCCCcEEeeccccCCCCcCCc-EEcCCCcEEEEechhhccCccccccCcEEEEEECCHHHHHHHHH
Confidence 99999999999999999999999999999875543 34567899999999999888899999999999999999999999
Q ss_pred hccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccC
Q 035513 171 QRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 171 ~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~ 214 (473)
+|+..++|.+.+++..++.. ..+.|..|+.|++..||+||+--
T Consensus 202 ~RD~~eRG~S~EeV~~~i~a-r~pd~~~yI~pqk~~ADiVI~v~ 244 (395)
T PLN02348 202 QRDMAERGHSLESIKASIEA-RKPDFDAYIDPQKQYADVVIEVL 244 (395)
T ss_pred HhhHhhcCCCHHHHHHHHHh-cCcchhhhcccccccCCEEEEec
Confidence 99998899999999888764 58899999999999999999744
No 17
>PLN02318 phosphoribulokinase/uridine kinase
Probab=99.92 E-value=1.2e-24 Score=223.72 Aligned_cols=211 Identities=27% Similarity=0.460 Sum_probs=175.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
..++.+|+|+|+|||||||+++.|+..++ ...+|++|+|+.. . ....+.|++|..+|++.+.+.+..+++|+
T Consensus 62 ~~~riIIGIaGpSGSGKTTLAk~LaglLp--~vgvIsmDdy~~~--~----~~i~~nfD~P~a~D~d~L~enL~~Lr~Gk 133 (656)
T PLN02318 62 NDGIILVGVAGPSGAGKTVFTEKVLNFMP--SIAVISMDNYNDS--S----RIIDGNFDDPRLTDYDTLLDNIHDLKAGK 133 (656)
T ss_pred CCCeEEEEEECCCCCcHHHHHHHHHhhCC--CcEEEEEcceecc--h----hhhCccCCChhhcchhHHHHHHHHHhCCC
Confidence 34578999999999999999999999885 4789999998732 1 12346688999999999999999999999
Q ss_pred ceecccccccccccccc-ccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 109 AVSIPDYDFKSHKRKQQ-SRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~-~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
.+.+|.||+..+.+... .....+.+++|+||+++++ +.+++.+|+.||++++.+.++.|++.||..++|++.+.++++
T Consensus 134 sV~iPiYDf~t~~r~~~~~i~v~p~~VVIVEGIyaL~-~~Lr~LlDlkIFVDtdvDirL~RRI~RD~~eRGrs~EsVi~q 212 (656)
T PLN02318 134 SVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALS-EKLRPLLDLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQ 212 (656)
T ss_pred ceecCccccccCcccCCceeecCCCcEEEEechhhcc-HhHHhhCCEEEEEcCCccHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999877643 3446778999999999985 789999999999999999999999999999999999999999
Q ss_pred HHhhcccchhhhcCCccccccEecccC------CCchhhh-----hhhhheeeecccccccc--ccccceeecc
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRG------GDNDVAI-----DLIVQHILTKLGQHDLC--KIYSNVDVIV 248 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~------~~~~~~i-----~~i~~~I~~~l~~~~l~--~~~~~v~v~~ 248 (473)
|....+|.|..|+.|.++.||++|+|+ ..+...+ +..+++|+..|.++... +...++|..+
T Consensus 213 ~~~~VkP~y~~FIeP~kk~ADIII~n~f~P~~g~~np~~Ilk~~~~~~~~~i~~~L~~~~~~~~~~~~DiYl~~ 286 (656)
T PLN02318 213 ISETVYPMYKAFIEPDLQTAHIKIVNKFNPFSGFQNPTYILKSSRSVTVEQIKAVLSEDHTETTEETYDIYLLP 286 (656)
T ss_pred HHHhhcchHHHHhCcchhcceEEEecCCCCCCCCCCCeEEecCCccccHHHHHHHhhhccccccceeeEEEecC
Confidence 999999999999999999999999762 2344444 66788888888776433 2334555533
No 18
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=99.91 E-value=6.8e-24 Score=199.44 Aligned_cols=182 Identities=27% Similarity=0.440 Sum_probs=143.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC----CCCEEEEecCCCCCCCCHHHHhhccCc-cCCCCccccHHHHHHHHHHhhc-C
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR----DQRVVLVNQDSFYHSLTDEKLQNLHDY-NFDHPDAFDTELLLSDMEKLKH-G 107 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~----~~~~~~is~D~~~~~~~~~~~~~~~~~-~f~~~~~~d~~~l~~~l~~l~~-g 107 (473)
+|||+|++||||||+|+.|+..+. ...+.++++|+||.. ...+...+.. .++.|+++|.+.+.+.+..++. +
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~~~~~~~~v~vi~~D~f~~~--~~~~~~~~~~~~~g~p~~~d~~~l~~~L~~l~~g~ 78 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYP--NKELIERGLMDRKGFPESYDMEALLKFLKDIKSGK 78 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHhhcCCCCcEEEEecCcccCc--HHHHHHhhhhhcCCCcccCCHHHHHHHHHHHHCCC
Confidence 589999999999999999999884 345889999999843 3333333322 2456899999999999999999 4
Q ss_pred Cceeccccccccccccccccc-cCCCcEEEEecccccCChh-----hhhccCeEEEEecChhHHHHHhhhccc---cccC
Q 035513 108 QAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDPR-----VRDLMSMKIFVDTDSDVRLSRRIQRDT---VERG 178 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~~-----~~~~~Dl~I~L~~~~e~~~~R~~~R~~---~~~~ 178 (473)
+.+..|.|++..+.+...... ..+.+++|+||++++..+. +.+.+|++|||++|.+++.+|+.+|.. .+++
T Consensus 79 ~~v~~P~yd~~~~~~~~~~~~~~~~~~vvIvEG~~~l~~~~~~~~~l~~~~D~~ifvd~~~~~~~~rl~~R~~r~~~~~~ 158 (220)
T cd02025 79 KNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTGQNPRLFVSDFFDFSIYVDADEDDIEKWYIKRFLKLRETAF 158 (220)
T ss_pred CcEEccccceeccccCCCCceecCCCCEEEECCchhcCCcccchhhHHHhCCeEEEEECCHHHHHHHHHHHHHHHHHHHH
Confidence 789999999999988765433 5678899999999998765 889999999999999998777666533 2334
Q ss_pred CChHHH----------------HHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 179 RDIEDV----------------LDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 179 ~~~~~~----------------~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
++...+ ..+|....+++++.|+.|++..||+||..+.++
T Consensus 159 r~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~i~p~~~~AD~ii~~~~~~ 213 (220)
T cd02025 159 SDPDSYFHRYAKMSEEEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADH 213 (220)
T ss_pred hCchhhhhcccCCCHHHHHHHHHHHHHHcCHHHHhhhccCCccceEEEEEeCCCC
Confidence 444332 334777889999999999999999999866433
No 19
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=99.91 E-value=1e-23 Score=192.16 Aligned_cols=174 Identities=32% Similarity=0.488 Sum_probs=144.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCcee
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~ 111 (473)
+|+|+|+|||||||+|+.|++.++ ..++.++++|+||+.. ....... ..++.+..+|++.+.+.+..+++++.+.
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~~~-~~~~~~~--g~~d~~~~~d~~~l~~~l~~l~~~~~~~ 77 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYVPR-KTPRDED--GNYDFESILDLDLLNKNLHDLLNGKEVE 77 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcccCc-ccccccC--CCCCCCccccHHHHHHHHHHHHCCCeee
Confidence 589999999999999999999975 2458999999999765 1111222 2355566799999999999999999999
Q ss_pred cccccccccccccc-ccccCCCcEEEEecccccCChhhhhccCeEEEEecChhH-HHHHhhhccccccCCChHHHHHHHH
Q 035513 112 IPDYDFKSHKRKQQ-SRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDV-RLSRRIQRDTVERGRDIEDVLDQYA 189 (473)
Q Consensus 112 ~p~~~~~~~~~~~~-~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~-~~~R~~~R~~~~~~~~~~~~~~~~~ 189 (473)
.|.|++..+.+... .....+.+++|+||+++++ +.+++.+|+.||++++.++ ++.|++.||..++|++.+.++.+|
T Consensus 78 ~p~yd~~~~~~~~~~~~~~~~~~vIIvEG~~~l~-~~l~~~~d~~I~vd~~~~~~rl~rri~RD~~~rg~~~~~~i~~~- 155 (179)
T cd02028 78 LPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRSLLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMW- 155 (179)
T ss_pred cccceeECCccCCCceEEeCCCCEEEEecHHhcC-HhHHhhcCEEEEEeCCccHHHHHHHHHHhHHhhCCCHHHHhhhc-
Confidence 99999999887654 3446678999999999985 6888999999999999998 999999999999999999999995
Q ss_pred hhcccchhhhcCCccccccEecc
Q 035513 190 RFVKPSFEEFILPSKKYADIIIP 212 (473)
Q Consensus 190 ~~~~~~~~~~i~~~~~~ad~vI~ 212 (473)
....+.+..++.|++..||++++
T Consensus 156 ~~~~~~~~~~~~~~~~~ad~~~~ 178 (179)
T cd02028 156 PSVPSGEEFIIPPLQEAAIVMFN 178 (179)
T ss_pred ccccCchhhcCCCchhccceecc
Confidence 45555555556778999999986
No 20
>PRK05439 pantothenate kinase; Provisional
Probab=99.91 E-value=1.5e-23 Score=204.31 Aligned_cols=188 Identities=28% Similarity=0.445 Sum_probs=149.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEecCCCCCCCCHHHHhhccCc-cCCCCccccHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD----QRVVLVNQDSFYHSLTDEKLQNLHDY-NFDHPDAFDTELLLSDME 102 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~----~~~~~is~D~~~~~~~~~~~~~~~~~-~f~~~~~~d~~~l~~~l~ 102 (473)
..+.+.+|||+|++||||||+|+.|++.++. ..+.++++|+||... ..+...+.. .++.|+++|++.+.+.|.
T Consensus 82 ~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy~~~--~~l~~~~l~~~kg~Pes~D~~~l~~~L~ 159 (311)
T PRK05439 82 GQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFLYPN--AVLEERGLMKRKGFPESYDMRALLRFLS 159 (311)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccccCH--HHHhhhhccccCCCcccccHHHHHHHHH
Confidence 4567899999999999999999999987753 458999999999543 332222222 256799999999999999
Q ss_pred HhhcCCc-eeccccccccccccc-cccccCCCcEEEEecccccCChhh------hhccCeEEEEecChhHHHHHhhhccc
Q 035513 103 KLKHGQA-VSIPDYDFKSHKRKQ-QSRLINPSDVFILEGILVLHDPRV------RDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 103 ~l~~g~~-i~~p~~~~~~~~~~~-~~~~~~~~~viIlEG~~~l~~~~~------~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
.+++|+. +..|.|++..+.+.. ......+++++|+||++++..+.. .+.+|++|||+++.+.+.+|+++|..
T Consensus 160 ~Lk~G~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIvIVEGi~~L~~~~~~~~~~l~d~~D~~IfVda~~~~~~~w~i~R~~ 239 (311)
T PRK05439 160 DVKSGKPNVTAPVYSHLIYDIVPGEKQTVDQPDILIVEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDLIEKWYIERFL 239 (311)
T ss_pred HHHcCCCeEEeeeEEeecCCcCCCceEEeCCCCEEEEcCchhccCcccccchhhHHhCCEEEEEECCHHHHHHHHHHHHH
Confidence 9999986 999999999998874 334567889999999998865554 89999999999999999888877754
Q ss_pred cc---------------cCCChH----HHHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 175 VE---------------RGRDIE----DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 175 ~~---------------~~~~~~----~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
.- .+.+.+ ....+|.....|+++.+|.|++..||+||..+.++
T Consensus 240 ~lr~~~~rdp~s~~~~~~~~s~~~a~~~a~~~w~~~~~pn~~~~I~Ptk~~ADlIi~~~~~h 301 (311)
T PRK05439 240 KLRETAFSDPDSYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADH 301 (311)
T ss_pred HHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHhcchhhHHHhccCCCcCCCEEEeCCCCC
Confidence 31 122223 33446777888999999999999999999877443
No 21
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=99.89 E-value=1.1e-22 Score=197.10 Aligned_cols=185 Identities=25% Similarity=0.438 Sum_probs=146.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC----CCCEEEEecCCCCCCCCHHHHhhcc-CccCCCCccccHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR----DQRVVLVNQDSFYHSLTDEKLQNLH-DYNFDHPDAFDTELLLSDME 102 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~----~~~~~~is~D~~~~~~~~~~~~~~~-~~~f~~~~~~d~~~l~~~l~ 102 (473)
..+.|.+|||+|++||||||+++.|+..+. ...+.++++|+||... ..+...+ ...++.|+++|.+.+.+.+.
T Consensus 58 ~~~~p~IIGIaG~~GSGKSTlar~L~~ll~~~~~~g~V~vi~~D~f~~~~--~~l~~~g~~~~~g~P~s~D~~~l~~~L~ 135 (290)
T TIGR00554 58 GAKIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPN--QVLKERNLMKKKGFPESYDMHRLVKFLS 135 (290)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCCceEEEecccccccH--HHHHHcCCccccCCChhccHHHHHHHHH
Confidence 356789999999999999999999987775 2248889999999543 2222222 13456799999999999999
Q ss_pred HhhcCCc-eeccccccccccccccc-cccCCCcEEEEecccccCChh----------hhhccCeEEEEecChhHHHHHhh
Q 035513 103 KLKHGQA-VSIPDYDFKSHKRKQQS-RLINPSDVFILEGILVLHDPR----------VRDLMSMKIFVDTDSDVRLSRRI 170 (473)
Q Consensus 103 ~l~~g~~-i~~p~~~~~~~~~~~~~-~~~~~~~viIlEG~~~l~~~~----------~~~~~Dl~I~L~~~~e~~~~R~~ 170 (473)
.+++|.. +..|.|++..+++.... ....+++++|+||++.+..+. +.+.+|++|||++|.+.+.+|++
T Consensus 136 ~Lk~g~~~v~~P~Yd~~~~d~~~~~~~~v~~~dIiIvEGi~vL~~~~~~~~~~~~~~~~d~~D~~IyvDa~~d~~~~w~i 215 (290)
T TIGR00554 136 DLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYI 215 (290)
T ss_pred HHHCCCCceecCccccccCCcCCCCeEEcCCCCEEEECCchHhCCchhcccccchHHHHHhCCEEEEEECCHHHHHHHHH
Confidence 9999985 99999999999887543 335789999999999987654 46899999999999999999988
Q ss_pred hccccc--c-------------CCCh----HHHHHHHHhhcccchhhhcCCccccccEecccC
Q 035513 171 QRDTVE--R-------------GRDI----EDVLDQYARFVKPSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 171 ~R~~~~--~-------------~~~~----~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~ 214 (473)
+|...- + +.+. ......|.....+++.++|.|.+..||+|+..+
T Consensus 216 ~R~~~l~~~~~~~~~s~~~~~~~~~~~ea~~~~~~~w~~~~~~nl~~~I~Ptr~rAdlIl~~~ 278 (290)
T TIGR00554 216 NRFLKFREGAFTDPDSYFHNYAKLSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKG 278 (290)
T ss_pred HHHHHHHHhhhcCcchhhhhhccCCHHHHHHHHHHHHHHcchhhHHhhCCCCcccccEEEecC
Confidence 875321 1 1222 223345788889999999999999999999866
No 22
>PRK07429 phosphoribulokinase; Provisional
Probab=99.88 E-value=1.2e-21 Score=193.60 Aligned_cols=183 Identities=27% Similarity=0.528 Sum_probs=152.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
+.+++.+|+|+|++||||||+++.|++.++...+.++++|+|+. .....+...+ +...+|...+++.+.+.+..++.+
T Consensus 4 ~~~~~~IIgI~G~SGSGKSTla~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~g-~~~l~p~~~~~d~l~~~l~~L~~g 81 (327)
T PRK07429 4 MPDRPVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDDYHS-YDRKQRKELG-ITALDPRANNLDIMYEHLKALKTG 81 (327)
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHhHhccCceEEEEeccccc-CCHHHHHhcC-CcccCccchHHHHHHHHHHHHHCC
Confidence 45678999999999999999999999999876688999999873 3444443332 223457788899999999999999
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
+.+..|.|++........ ....+.+++|+||++.+++..+++.+|++|||+++.++++.|+++|+...+|.+.+++...
T Consensus 82 ~~I~~P~yd~~~g~~~~~-~~i~p~~iVIvEG~~~l~~~~lr~~~D~~I~Vda~~evr~~Rri~Rd~~rrG~s~eei~~~ 160 (327)
T PRK07429 82 QPILKPIYNHETGTFDPP-EYIEPNKIVVVEGLHPLYDERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAE 160 (327)
T ss_pred CceecceeecCCCCcCCc-EecCCCcEEEEechhhcCcHhHHhhCCEEEEEECCHHHHHHHHHHHHHhhcCCCHHHHHHH
Confidence 999999999998765432 2345578999999998888888899999999999999999999999988888888888877
Q ss_pred HHhhcccchhhhcCCccccccEecccC
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~ 214 (473)
+.. ..+.+..|+.|++..||+||++-
T Consensus 161 i~~-r~pd~~~yI~P~k~~ADiVI~~~ 186 (327)
T PRK07429 161 IEA-REPDFEAYIRPQRQWADVVIQFL 186 (327)
T ss_pred HHH-hCccHhhhhcccccCCCEEEEcC
Confidence 655 47899999999999999999865
No 23
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=99.88 E-value=7.8e-22 Score=191.01 Aligned_cols=177 Identities=32% Similarity=0.563 Sum_probs=149.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|||+|++||||||+++.|++.++..+..++++|+|++ +....+...+ +.+.+|+..+++.+.+.+..++.++.+.+|
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~~~~~~vi~~Dd~~~-~~~~~r~~~g-~~~~~p~~~~~d~l~~~l~~Lk~g~~i~~P 78 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDDYHS-LDRKGRKETG-ITALDPRANNFDLMYEQLKALKEGQAIEKP 78 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhCCCceEEEECccccc-CCHHHHHHhh-cccccccchhHHHHHHHHHHHHCCCCcccc
Confidence 58999999999999999999998776788999999975 3444443332 334567788888899999999999999999
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVK 193 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~ 193 (473)
.|++....... .....+.+++|+||+++++++.+++.+|++|||+++.+++++|+++|+...+|.+.+++.+.+..+ .
T Consensus 79 ~y~~~~~~~~~-~~~i~~~~ivIvEG~~~l~~~~l~~~~D~~I~vd~~~e~r~~r~i~Rd~~rrG~s~e~v~~~i~~r-~ 156 (273)
T cd02026 79 IYNHVTGLIDP-PELIKPTKIVVIEGLHPLYDERVRELLDFSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEAR-K 156 (273)
T ss_pred cccccCCCcCC-cEEcCCCCEEEEeeehhhCchhhhhhccEEEEEECChhHHHHHHHHHHHHHhCCCHHHHHHHHHhh-c
Confidence 99998876432 223456789999999988888899999999999999999999999999888898999999888654 7
Q ss_pred cchhhhcCCccccccEecccC
Q 035513 194 PSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 194 ~~~~~~i~~~~~~ad~vI~~~ 214 (473)
+.+..|+.|++..||+||+..
T Consensus 157 ~~~~~~I~P~~~~ADvVI~~~ 177 (273)
T cd02026 157 PDFEAYIDPQKQYADVVIQVL 177 (273)
T ss_pred hhHHHHhccccccCcEEEEcc
Confidence 899999999999999999765
No 24
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=99.84 E-value=1.3e-20 Score=171.54 Aligned_cols=141 Identities=18% Similarity=0.289 Sum_probs=112.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|+|+|+|||||||+|+.|++.++ ++.++++|+||+..........+.+.|+.|+++|++++.+.|..+++++.+..+
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~--~~~~i~~Ddf~~~~~~~~~~~~~~~~~d~p~a~D~~~l~~~L~~l~~~~~~~~~ 78 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILP--NCCVIHQDDFFKPEDEIPVDENGFKQWDVLEALDMEAMMSTLDYWRETGHFPKF 78 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC--CCeEEccccccCCcccCChHhhcCCCCCCcccccHHHHHHHHHHHHcCCCccCc
Confidence 589999999999999999999985 489999999997655433333355789999999999999999999998865544
Q ss_pred cccccccccc--------------ccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccc
Q 035513 114 DYDFKSHKRK--------------QQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 114 ~~~~~~~~~~--------------~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~ 176 (473)
.++....... .........++||+||.+++..+.+.+.+|++||+++|.+++++|+.+|+...
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iViVEG~~l~~~~~l~~l~D~~Ifvd~~~d~~~~Rr~~R~~~~ 155 (187)
T cd02024 79 LRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIVDGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREARTGYV 155 (187)
T ss_pred ccCccccccccccccchhhhhhccccccccCCCcEEEEechHhcCCHHHHhhcCceeEecCCHHHHHHHHHHcCCcc
Confidence 4433332211 11122456789999999998888899999999999999999999999998543
No 25
>PRK06696 uridine kinase; Validated
Probab=99.83 E-value=6e-20 Score=173.64 Aligned_cols=180 Identities=27% Similarity=0.379 Sum_probs=133.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCCCCCCHHHHhhccCccCCC-----CccccHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDH-----PDAFDTELLLSDM 101 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~~~~~~~~~~~~~~~~f~~-----~~~~d~~~l~~~l 101 (473)
..++.+|+|+|++||||||+|+.|++.++.. .+.++++|+||.. ...+...+ +.+ ++++|++.|.+.+
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~~~--~~~r~~~~---~~~~~g~~~~~~d~~~L~~~l 93 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNP--RVIRYRRG---RESAEGYYEDAYDYTALRRLL 93 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeccccccCC--HHHHHHcC---CCChhhcCccccCHHHHHHHH
Confidence 4568999999999999999999999999633 4566779999954 33332222 222 3678999998887
Q ss_pred HHhh-cCC--ceeccccccccccccc-cccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcccccc
Q 035513 102 EKLK-HGQ--AVSIPDYDFKSHKRKQ-QSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVER 177 (473)
Q Consensus 102 ~~l~-~g~--~i~~p~~~~~~~~~~~-~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~ 177 (473)
.... .+. .+..|.|++..+.... .........++|+||++++ .+.+...+|++||+++|.+++++|+..|+...+
T Consensus 94 ~~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~vviveg~~l~-~~~~~~~~d~~i~v~~~~e~~~~R~~~Rd~~~~ 172 (223)
T PRK06696 94 LDPLGPNGDRQYRTASHDLKTDIPVHNPPLLAAPNAVLIVDGTFLL-RPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAF 172 (223)
T ss_pred HhhccCCCceeEeeeeeccccCcccCCCceecCCCCEEEEecHHHh-hhhHHhhCCEEEEEECCHHHHHHHHHHhhhhhh
Confidence 6643 332 3555677777665543 2233456779999999875 577888999999999999999999999986666
Q ss_pred CCChHHHHHHHHhhcccchhhhcCCc--cccccEecccCC
Q 035513 178 GRDIEDVLDQYARFVKPSFEEFILPS--KKYADIIIPRGG 215 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ad~vI~~~~ 215 (473)
|. .+.....|+.+..+.++.|+.+. ++.||+||+|+.
T Consensus 173 g~-~~~~~~~~~~r~~~~~~~y~~~~~p~~~ADivi~n~~ 211 (223)
T PRK06696 173 GS-YEEAEKMYLARYHPAQKLYIAEANPKERADVVIDNSD 211 (223)
T ss_pred CC-chHHHHHHHHHHhHHHHHHHhhcChHhhCeEEEECCC
Confidence 64 45566777777777777776444 678999999874
No 26
>PRK07667 uridine kinase; Provisional
Probab=99.82 E-value=9.2e-20 Score=168.36 Aligned_cols=176 Identities=17% Similarity=0.296 Sum_probs=125.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHH-HHHHh
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLS-DMEKL 104 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~-~l~~l 104 (473)
...++.+|||+|++||||||+|+.|++.++. .++.+++.|+|++............+.-.....+|.+.+.+ .+..+
T Consensus 13 ~~~~~~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~~~~~~~~~~~~~~~~~~~~~~~~d~~~L~~~v~~~L 92 (193)
T PRK07667 13 HKENRFILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYLQWDIEWLRQKFFRKL 92 (193)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcccchhhhHHhcCCCchhhhhhhhhhHHHHHHHHHHhh
Confidence 3456689999999999999999999998853 35789999999964432211111111000112567777765 46888
Q ss_pred hcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHH
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDV 184 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~ 184 (473)
+.++.+.+|.|++.............+.+++|+||+++ .++.+.+.+|.+|||++|.+++++|+++|+. ..
T Consensus 93 ~~~~~i~~P~~d~~~~~~~~~~~~~~~~~vvIvEG~~l-~~~~~~~~~d~~v~V~~~~~~~~~R~~~r~~--------~~ 163 (193)
T PRK07667 93 QNETKLTLPFYHDETDTCEMKKVQIPIVGVIVIEGVFL-QRKEWRDFFHYMVYLDCPRETRFLRESEETQ--------KN 163 (193)
T ss_pred cCCCeEEEeeeccccccccccceecCCCCEEEEEehhh-hhhhHHhhceEEEEEECCHHHHHHHHhcccH--------hH
Confidence 88999999999998876554333345679999999996 4577889999999999999999999998752 22
Q ss_pred HHHHHhhcccchhhhcCC--ccccccEecc
Q 035513 185 LDQYARFVKPSFEEFILP--SKKYADIIIP 212 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~--~~~~ad~vI~ 212 (473)
.++|+.+..+.++.|+.. .+..||+|++
T Consensus 164 ~~~~~~r~~~a~~~y~~~~~~~~~ad~i~~ 193 (193)
T PRK07667 164 LSKFKNRYWKAEDYYLETESPKDRADLVIK 193 (193)
T ss_pred HHHHHHHhHHHHHHHHhhcChHhhCcEEeC
Confidence 344555444556666443 2677999874
No 27
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=99.80 E-value=5.9e-19 Score=167.52 Aligned_cols=186 Identities=22% Similarity=0.340 Sum_probs=144.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEE-EecCCCCCCCCHHHHhhccC-ccCCCCccccHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVL-VNQDSFYHSLTDEKLQNLHD-YNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~-is~D~~~~~~~~~~~~~~~~-~~f~~~~~~d~~~l~~~l~~ 103 (473)
...++.+|+|+|++||||||+++.|+..++..+ +.+ ++.|+|+.... .....+. ..++.++.++.+.+.+.+..
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g~~~v~i~~D~~~~~~~--~~~~~g~~~~~~~~~~~d~~~~~~~l~~ 106 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGFHLDNA--VLDAHGLRPRKGAPETFDVAGLAALLRR 106 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhhhccCCceEEEecccccCCHH--HHHhcccccccCCCCCCCHHHHHHHHHH
Confidence 345689999999999999999999999886422 345 89999985422 2222222 12456789999999999999
Q ss_pred hhcCC-ceecccccccccccccccccc-CCCcEEEEecccccCCh----hhhhccCeEEEEecChhHHHHHhhhcccccc
Q 035513 104 LKHGQ-AVSIPDYDFKSHKRKQQSRLI-NPSDVFILEGILVLHDP----RVRDLMSMKIFVDTDSDVRLSRRIQRDTVER 177 (473)
Q Consensus 104 l~~g~-~i~~p~~~~~~~~~~~~~~~~-~~~~viIlEG~~~l~~~----~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~ 177 (473)
+..+. .+..|.|++..+......... ...+++|+||.+++... .+...+|++||+++|.+++++|+..|+ .++
T Consensus 107 l~~~~~~i~~P~yD~~~~~~~~~~~~~~~~~~ivIvEG~~~l~~~~~~~~l~~~~D~vi~v~~~~~~~~~R~~~R~-~~~ 185 (229)
T PRK09270 107 LRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDEEPWRRLAGLFDFTIFLDAPAEVLRERLVARK-LAG 185 (229)
T ss_pred HHcCCCceecccCCcccCCCCCCceEecCCCCEEEEcCcceeeccccHHHHHhhCCEEEEEECCHHHHHHHHHHHH-Hhc
Confidence 99887 899999999887765443332 35789999999887653 456788999999999999999999995 457
Q ss_pred CCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 178 GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
+.+.++..+.+..+..+.+ .|+.+.+..||+||+|++..
T Consensus 186 g~s~~~~~~~~~~~~~~~~-~~i~~~~~~ad~vI~n~~~~ 224 (229)
T PRK09270 186 GLSPEAAEAFVLRNDGPNA-RLVLETSRPADLVLEMTATG 224 (229)
T ss_pred CCCHHHHHHHHHhcChHHH-HHHHhcCCCCCEEEEecCCc
Confidence 7888888888876666666 57888899999999988554
No 28
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=99.74 E-value=2.7e-17 Score=154.13 Aligned_cols=161 Identities=27% Similarity=0.403 Sum_probs=126.4
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEecCCCCCCCCHHHHhhccCcc-CCCCccccHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD----QRVVLVNQDSFYHSLTDEKLQNLHDYN-FDHPDAFDTELLLSD 100 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~----~~~~~is~D~~~~~~~~~~~~~~~~~~-f~~~~~~d~~~l~~~ 100 (473)
+...+.+.+|||+|++|+||||+|+.|+..+.. ..+..+.+|.|+ +........+... .+.|+++|...+.+.
T Consensus 76 ~~~~~~pfIIgiaGsvavGKST~ar~L~~ll~~~~~~~~v~lvpmDGFh--y~n~~L~~~glm~rKGfPeSyD~~~ll~f 153 (283)
T COG1072 76 TNNQQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFH--YPNAVLDERGLMARKGFPESYDVAALLRF 153 (283)
T ss_pred cCCCCCCEEEEeccCccccHHHHHHHHHHHHhhCCCCCceEEEeccccc--cCHhHhhhccccccCCCCccccHHHHHHH
Confidence 345678999999999999999999999987753 348999999999 4444443333332 245999999999999
Q ss_pred HHHhhcCCc-eecccccccccccccccc-ccCCCcEEEEecccccCCh----hhhhccCeEEEEecChhHHHHHhhhccc
Q 035513 101 MEKLKHGQA-VSIPDYDFKSHKRKQQSR-LINPSDVFILEGILVLHDP----RVRDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 101 l~~l~~g~~-i~~p~~~~~~~~~~~~~~-~~~~~~viIlEG~~~l~~~----~~~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
+..++++.. +..|.|++..++.+..+. ....++++|+||.+.+.+. .+.+.||++||+|++.+...+|.++|..
T Consensus 154 l~~vK~~~~~v~aPvysh~~yD~vpd~~~v~~~pdIlI~EG~nvLq~~~p~~~~sdffDfSIyvDa~~~~le~wyi~Rfl 233 (283)
T COG1072 154 LSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNNVLQDGEPWLFLSDFFDFSIYVDADEELLEERYIERFL 233 (283)
T ss_pred HHHHhcCCCccccccccccccccCCCceeecCCCCEEEEechhhhcCCCccccccccceEEEEecCCHHHHHHHHHHHHH
Confidence 999997765 999999999999986544 4678899999999998776 3567899999999999999999999964
Q ss_pred cccCCChHHHHHHHH
Q 035513 175 VERGRDIEDVLDQYA 189 (473)
Q Consensus 175 ~~~~~~~~~~~~~~~ 189 (473)
.. +.........|.
T Consensus 234 ~~-g~~a~~~~~~~~ 247 (283)
T COG1072 234 KF-GLTAFEDPASYF 247 (283)
T ss_pred hc-ccchhhChhhHh
Confidence 33 333333333333
No 29
>PRK08233 hypothetical protein; Provisional
Probab=99.71 E-value=8.9e-17 Score=146.89 Aligned_cols=173 Identities=23% Similarity=0.370 Sum_probs=116.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
++++|+|+|++||||||+|+.|+++++. ..++..|.++............... ...+.++.+.+.+.+..+.+.
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~--~~~~~~d~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~~--- 75 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKN--SKALYFDRYDFDNCPEDICKWIDKG-ANYSEWVLTPLIKDIQELIAK--- 75 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCC--CceEEECCEEcccCchhhhhhhhcc-CChhhhhhHHHHHHHHHHHcC---
Confidence 3589999999999999999999999863 4666777776433221111110000 011345556666666555431
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcccccc-CCChHHHHHHHH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVER-GRDIEDVLDQYA 189 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~-~~~~~~~~~~~~ 189 (473)
.+.+++++||.+....+.+...+|++|||++|.+++++|+.+|+.... ..........|.
T Consensus 76 -------------------~~~~~vivd~~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~~~~~ 136 (182)
T PRK08233 76 -------------------SNVDYIIVDYPFAYLNSEMRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYL 136 (182)
T ss_pred -------------------CCceEEEEeeehhhccHHHHHHcCEEEEEcCCHHHHHHHHHHHHhhhccccchhhHHHHHH
Confidence 123678899887766667788899999999999999999998864322 123345566777
Q ss_pred hhcccchhhhcCCccccccEecccCCCchhhhhhhhhee
Q 035513 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 190 ~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I 228 (473)
...++.|..+..+....++++|+++...++..+++.+.+
T Consensus 137 ~~~~~~y~~~~~~~~~~~~~vId~~~~~e~i~~~i~~~l 175 (182)
T PRK08233 137 NYARPLYLEALHTVKPNADIVLDGALSVEEIINQIEEEL 175 (182)
T ss_pred HHHHHHHHHHhhcCccCCeEEEcCCCCHHHHHHHHHHHH
Confidence 778888888877766778999976544444444444433
No 30
>PRK06547 hypothetical protein; Provisional
Probab=99.70 E-value=1.6e-16 Score=143.44 Aligned_cols=153 Identities=20% Similarity=0.285 Sum_probs=106.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
...+.+|+|+|++||||||+++.|++.++ +.++++|+||+..... ..+.+.+.+.+.. .|+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~---~~~~~~d~~~~~~~~~--------------~~~~~~l~~~~l~--~g~ 72 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTG---FQLVHLDDLYPGWHGL--------------AAASEHVAEAVLD--EGR 72 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhC---CCeecccceecccccC--------------ChHHHHHHHHHHh--CCC
Confidence 56788999999999999999999999876 8999999998532110 1123344444444 566
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCChhhhhccC-----eEEEEecChhHHHHHhhhccccccCCChHH
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMS-----MKIFVDTDSDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~D-----l~I~L~~~~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
...++ |++....... .......+++|+||.+++. +..++.+| +.|||++|.+++++|+++|+.. ...
T Consensus 73 ~~~~~-yd~~~~~~~~-~~~l~~~~vVIvEG~~al~-~~~r~~~d~~g~v~~I~ld~~~~vr~~R~~~Rd~~-----~~~ 144 (172)
T PRK06547 73 PGRWR-WDWANNRPGD-WVSVEPGRRLIIEGVGSLT-AANVALASLLGEVLTVWLDGPEALRKERALARDPD-----YAP 144 (172)
T ss_pred Cceec-CCCCCCCCCC-cEEeCCCCeEEEEehhhcc-HHHHHHhccCCCEEEEEEECCHHHHHHHHHhcCch-----hhH
Confidence 66666 7777654332 2234456799999999885 56788889 9999999999999999999752 233
Q ss_pred HHHHHHhhcccchhhhcCC--ccccccEecc
Q 035513 184 VLDQYARFVKPSFEEFILP--SKKYADIIIP 212 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~--~~~~ad~vI~ 212 (473)
.++.|.... +.|+.. .+..||+++.
T Consensus 145 ~~~~w~~~e----~~~~~~~~~~~~ad~~~~ 171 (172)
T PRK06547 145 HWEMWAAQE----ERHFARYDPRDVADWLGS 171 (172)
T ss_pred HHHHHHHHH----HHHHhcCCChhccEEEec
Confidence 334444333 333322 2567898873
No 31
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=99.65 E-value=1.5e-17 Score=150.89 Aligned_cols=167 Identities=25% Similarity=0.366 Sum_probs=105.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHH----
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDM---- 101 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l---- 101 (473)
++|||+|+.||||||+++.|++ ++ +.++++|.+.+.+.... .+.++...+...+..|+..|.+.+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G---~~vidaD~i~~~l~~~~~~~~~~l~~~FG~~il~~~g~idR~~L~~~vF~d~ 76 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LG---FPVIDADEIAHELYEPGSEGYKALKERFGEEILDEDGEIDRKKLAEIVFSDP 76 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT----EEEEHHHHHHHCTSCTCHHHHHHHHHHGGGGBETTSSB-HHHHHHHHTTSH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CC---CCEECccHHHHHHhhcCHHHHHHHHHHcCccccCCCCCChHHHHHHHHhcCH
Confidence 4899999999999999999998 55 99999997665554321 244454445555677777776654
Q ss_pred HHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCCh
Q 035513 102 EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 102 ~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
..++.-+.+.+|........++... ....++++|.+. +++..+...+|.+|++.+|.+++.+|+++|++ .+.
T Consensus 77 ~~~~~L~~iihP~I~~~~~~~~~~~---~~~~~~v~e~pL-L~E~~~~~~~D~vi~V~a~~e~ri~Rl~~R~~----~~~ 148 (180)
T PF01121_consen 77 EKLKKLENIIHPLIREEIEKFIKRN---KSEKVVVVEIPL-LFESGLEKLCDEVIVVYAPEEIRIKRLMERDG----LSE 148 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC---HSTSEEEEE-TT-TTTTTGGGGSSEEEEEE--HHHHHHHHHHHHT----STH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHhc---cCCCEEEEEcch-hhhhhHhhhhceEEEEECCHHHHHHHHHhhCC----CcH
Confidence 2233334455676544444333221 122788998555 45778899999999999999999999999974 344
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
+........+. +..+ ..+.||+||+|+++.
T Consensus 149 ~~~~~ri~~Q~-~~~~-----k~~~ad~vI~N~g~~ 178 (180)
T PF01121_consen 149 EEAEARIASQM-PDEE-----KRKRADFVIDNNGSL 178 (180)
T ss_dssp HHHHHHHHTS---HHH-----HHHH-SEEEE-SSHH
T ss_pred HHHHHHHHhCC-CHHH-----HHHhCCEEEECCCCC
Confidence 44444333322 1111 157899999988653
No 32
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=99.65 E-value=7.3e-17 Score=148.90 Aligned_cols=172 Identities=19% Similarity=0.254 Sum_probs=111.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH------HhhccCccCCCCccccHHHHHHHHH-
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK------LQNLHDYNFDHPDAFDTELLLSDME- 102 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~------~~~~~~~~f~~~~~~d~~~l~~~l~- 102 (473)
..|++|||+|++||||||+++.|++.++ +.++++|.+.+.+.... .+.++.-.+. .+..|...|.+.+-
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg---~~vidaD~i~~~l~~~~~~~~~i~~~fG~~i~~-~g~idR~~L~~~vF~ 79 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLN---LNVVCADTISREITKKPSVIKKIAEKFGDEIVM-NKQINRAMLRAIITE 79 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcC---CeEEeccHHHHHHHCchHHHHHHHHHhCHHhcc-CCCcCHHHHHHHHhC
Confidence 3568999999999999999999998876 88999998876653221 1333333333 35677766666542
Q ss_pred ---HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhh--hhccCeEEEEecChhHHHHHhhhcccccc
Q 035513 103 ---KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV--RDLMSMKIFVDTDSDVRLSRRIQRDTVER 177 (473)
Q Consensus 103 ---~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~--~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~ 177 (473)
.+..-+.+.+|............ .+..++++|.+.++ +..+ ...+|.+|++.||.+++.+|+++|+...+
T Consensus 80 d~~~~~~Le~i~HP~V~~~~~~~~~~----~~~~~vv~eipLL~-E~~~~~~~~~D~vi~V~a~~e~ri~Rl~~Rd~~s~ 154 (204)
T PRK14733 80 SKEAKKWLEDYLHPVINKEIKKQVKE----SDTVMTIVDIPLLG-PYNFRHYDYLKKVIVIKADLETRIRRLMERDGKNR 154 (204)
T ss_pred CHHHHHHHHhhhhHHHHHHHHHHHHh----cCCCeEEEEechhh-hccCchhhhCCEEEEEECCHHHHHHHHHHcCCCCH
Confidence 23333456667665444333221 23468888865544 4443 46789999999999999999999975433
Q ss_pred CCChHHHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhh
Q 035513 178 GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVA 220 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~ 220 (473)
......+..|+....+ .+.||+||+|++ +.+..
T Consensus 155 ~~a~~ri~~Q~~~eek----------~~~aD~VI~N~g~~~~~l 188 (204)
T PRK14733 155 QQAVAFINLQISDKER----------EKIADFVIDNTELTDQEL 188 (204)
T ss_pred HHHHHHHHhCCCHHHH----------HHhCCEEEECcCCCHHHH
Confidence 2222222223332222 678999999997 54433
No 33
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=99.64 E-value=8.8e-17 Score=148.45 Aligned_cols=175 Identities=22% Similarity=0.262 Sum_probs=110.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCc-cccHHHHHHHHH--
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPD-AFDTELLLSDME-- 102 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~-~~d~~~l~~~l~-- 102 (473)
++|+|+|++||||||+++.|++.++ +.++++|.+.+++.... .+.++.-.+...+ ..|...+.+.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g---~~~i~~D~~~~~~~~~~~~~~~~l~~~fg~~i~~~~g~~idr~~L~~~vf~d 78 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKG---IPILDADIYAREALAPGSPILKAILQRYGNKIIDPDGSELNRKALGEIIFND 78 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC---CeEeeCcHHHHHHHhcCchHHHHHHHHhCHHhcCCCCCeeCHHHHHHHHhCC
Confidence 4799999999999999999999877 99999999876654321 1223333333344 566655555431
Q ss_pred --HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
....-+.+.+|.........+.. .....++++|.+. +++..+...+|.+||++||.+++.+|+.+|+. .+
T Consensus 79 ~~~~~~l~~i~hP~i~~~~~~~~~~---~~~~~~vv~e~pl-l~E~~~~~~~D~ii~V~a~~e~r~~Rl~~R~g----~s 150 (195)
T PRK14730 79 PEERRWLENLIHPYVRERFEEELAQ---LKSNPIVVLVIPL-LFEAKLTDLCSEIWVVDCSPEQQLQRLIKRDG----LT 150 (195)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh---cCCCCEEEEEeHH-hcCcchHhCCCEEEEEECCHHHHHHHHHHcCC----CC
Confidence 12222234455443333322211 1234688888544 45678888999999999999999999999963 34
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhh
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLI 224 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i 224 (473)
.++......... +. ......||+||+|+++.+...+++
T Consensus 151 ~e~~~~ri~~Q~-~~-----~~k~~~aD~vI~N~g~~e~l~~qv 188 (195)
T PRK14730 151 EEEAEARINAQW-PL-----EEKVKLADVVLDNSGDLEKLYQQV 188 (195)
T ss_pred HHHHHHHHHhCC-CH-----HHHHhhCCEEEECCCCHHHHHHHH
Confidence 444444443321 11 123568999999886554443333
No 34
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=99.63 E-value=1.1e-16 Score=147.85 Aligned_cols=176 Identities=22% Similarity=0.269 Sum_probs=111.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH--
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME-- 102 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~-- 102 (473)
+.+|+|+|++||||||+++.|++ ++ +.++++|.+.+.+.... .+.++.-.+...+..|...|.+.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~ 77 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LG---APVIDADAIAHEVVEPGGPALQAIVEAFGPEILDADGELDRAKLRELVFSD 77 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cC---CEEEEecHHHHHHhhccHHHHHHHHHHhCHHhcCCCCCcCHHHHHHHHhCC
Confidence 46899999999999999999998 65 99999999887654321 1223333343345667666555442
Q ss_pred --HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
.+..-+.+.+|.........+.. .....++++|++.++ +..+...+|.+|++++|.+++.+|+.+|+. .+
T Consensus 78 ~~~~~~L~~i~hP~v~~~~~~~~~~---~~~~~~vv~e~pll~-e~~~~~~~D~vi~V~a~~e~~~~Rl~~R~~----~s 149 (194)
T PRK00081 78 PEARKKLEAILHPLIREEILEQLQE---AESSPYVVLDIPLLF-ENGLEKLVDRVLVVDAPPETQLERLMARDG----LS 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---cccCCEEEEEehHhh-cCCchhhCCeEEEEECCHHHHHHHHHHcCC----CC
Confidence 22223345556554433322221 112368999976654 577888899999999999999999999864 23
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhh
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIV 225 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~ 225 (473)
.+......... .+.. .....+|++|+|+++.++..+++.
T Consensus 150 ~e~~~~ri~~Q-~~~~-----~~~~~ad~vI~N~g~~e~l~~qv~ 188 (194)
T PRK00081 150 EEEAEAIIASQ-MPRE-----EKLARADDVIDNNGDLEELRKQVE 188 (194)
T ss_pred HHHHHHHHHHh-CCHH-----HHHHhCCEEEECCCCHHHHHHHHH
Confidence 33333333222 1111 125679999998865554444443
No 35
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=99.62 E-value=1.9e-16 Score=144.56 Aligned_cols=166 Identities=20% Similarity=0.300 Sum_probs=111.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHHH---
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDMEK--- 103 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~~--- 103 (473)
+|+|+|++||||||+++.|++ ++ +.++++|.+.+++.... ...++...+...+.+|...|.+.+-.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g---~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~~~~~~g~idr~~L~~~vf~~~~ 76 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LG---IPVIDADKIAHEVYEPGGPALQAIVEAFGPDILLEDGELDRKKLGEIVFADPE 76 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CC---CCEEecCHHHHhhhhcccHHHHHHHHHcCcceeCCCCcCCHHHHHHHHhCCHH
Confidence 589999999999999999998 55 99999999987765432 12233333333456777766665532
Q ss_pred -hhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 104 -LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 104 -l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
+...+.+.+|.+.......... .....++++|++.+ ++..+...+|.+||+++|.+++.+|+++|+. .+.+
T Consensus 77 ~~~~l~~i~hp~i~~~~~~~~~~---~~~~~~vive~plL-~e~~~~~~~D~vv~V~a~~~~ri~Rl~~Rd~----~s~~ 148 (179)
T cd02022 77 KRKKLEAITHPLIRKEIEEQLAE---ARKEKVVVLDIPLL-FETGLEKLVDRVIVVDAPPEIQIERLMKRDG----LSEE 148 (179)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH---ccCCCEEEEEehHh-hcCCcHHhCCeEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 3334556667665444433322 11236888996655 4566778999999999999999999999974 3445
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
.....+..+.... .....||+||+|+++.
T Consensus 149 ~~~~r~~~Q~~~~------~~~~~aD~vI~N~~~~ 177 (179)
T cd02022 149 EAEARIASQMPLE------EKRARADFVIDNSGSL 177 (179)
T ss_pred HHHHHHHhcCCHH------HHHHhCCEEEECcCCC
Confidence 5555554432211 2367899999988543
No 36
>PLN02422 dephospho-CoA kinase
Probab=99.62 E-value=1.6e-16 Score=149.05 Aligned_cols=179 Identities=19% Similarity=0.190 Sum_probs=115.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH---
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME--- 102 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~--- 102 (473)
.+|+|+|++||||||+++.|+ .++ +.++++|.+.+++.... .+.++.-.+...+..|...|.+.+-
T Consensus 2 ~~igltG~igsGKstv~~~l~-~~g---~~~idaD~~~~~l~~~g~~~~~~l~~~FG~~il~~dG~idR~~L~~~VF~d~ 77 (232)
T PLN02422 2 RVVGLTGGIASGKSTVSNLFK-SSG---IPVVDADKVARDVLKKGSGGWKRVVAAFGEDILLPDGEVDREKLGQIVFSDP 77 (232)
T ss_pred eEEEEECCCCCCHHHHHHHHH-HCC---CeEEehhHHHHHHHHhhHHHHHHHHHHhCHHhcCCCCcCCHHHHHHHHhCCH
Confidence 479999999999999999998 455 99999999887765432 2333433344456677776666542
Q ss_pred -HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCCh
Q 035513 103 -KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 103 -~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
.++.-+.+.+|........+..... ..+..++++|.+.+ ++..+...+|.+|++++|.+++.+|+.+|+. .+.
T Consensus 78 ~~~~~Le~IlHP~V~~~~~~~~~~~~-~~~~~~vv~eipLL-~E~~~~~~~D~vI~V~a~~e~ri~RL~~R~g----~s~ 151 (232)
T PLN02422 78 SKRQLLNRLLAPYISSGIFWEILKLW-LKGCKVIVLDIPLL-FETKMDKWTKPVVVVWVDPETQLERLMARDG----LSE 151 (232)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHH-hcCCCEEEEEehhh-hhcchhhhCCEEEEEECCHHHHHHHHHHcCC----CCH
Confidence 2333345666766443322221111 12346889985554 4677888899999999999999999999963 344
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhe
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQH 227 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~ 227 (473)
++.......+. +.. .....||++|+|+++.++..+++.+.
T Consensus 152 eea~~Ri~~Q~-~~e-----ek~~~AD~VI~N~gs~e~L~~qv~~l 191 (232)
T PLN02422 152 EQARNRINAQM-PLD-----WKRSKADIVIDNSGSLEDLKQQFQKV 191 (232)
T ss_pred HHHHHHHHHcC-Chh-----HHHhhCCEEEECCCCHHHHHHHHHHH
Confidence 44443332221 111 12577999999986655444444333
No 37
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=99.62 E-value=1.8e-16 Score=150.18 Aligned_cols=183 Identities=15% Similarity=0.187 Sum_probs=116.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH--
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME-- 102 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~-- 102 (473)
|.+|||+|++||||||+++.|.+.++ +.++++|.+.+++.... .+.++...+...+.+|+..|.+.+-
T Consensus 1 M~iIGlTGgIgSGKStVs~~L~~~~G---~~viDaD~iar~l~~~~~~~~~~i~~~Fg~~i~~~dg~idR~~L~~~VF~d 77 (244)
T PTZ00451 1 MILIGLTGGIACGKSTVSRILREEHH---IEVIDADLVVRELQAPNMACTRKIAARWPLCVHPETGELNRAELGKIIFSD 77 (244)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC---CeEEehHHHHHHHHcCChHHHHHHHHHhchhhcCCCCcCCHHHHHHHHhCC
Confidence 36899999999999999999998776 99999998876653321 2333333333346677777666442
Q ss_pred --HhhcCCceeccccccccccccccc--------cccCCCcEEEEecccccCChhh-hhccCeEEEEecChhHHHHHhhh
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQS--------RLINPSDVFILEGILVLHDPRV-RDLMSMKIFVDTDSDVRLSRRIQ 171 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~--------~~~~~~~viIlEG~~~l~~~~~-~~~~Dl~I~L~~~~e~~~~R~~~ 171 (473)
.++.-+.+.+|.........+... ....+..++++|.+.++ +..+ ...+|.+|++++|.+++.+|+.+
T Consensus 78 ~~~~~~Le~i~HP~V~~~i~~~i~~~~~~~~~~~~~~~~~~~vv~evPLL~-E~~~~~~~~D~iv~V~a~~e~ri~RL~~ 156 (244)
T PTZ00451 78 AQARRALGRIMNPPIFRAILKRIAAAWWEDLWRSGAGSSPLIVVLDAPTLF-ETKTFTYFVSASVVVSCSEERQIERLRK 156 (244)
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHhhhhhhhhhhhccCCCEEEEEechhh-ccCchhhcCCeEEEEECCHHHHHHHHHH
Confidence 223334556675543332222110 01122458999966654 5553 45789999999999999999999
Q ss_pred ccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccC--CCchhhhhhhhhee
Q 035513 172 RDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRG--GDNDVAIDLIVQHI 228 (473)
Q Consensus 172 R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~--~~~~~~i~~i~~~I 228 (473)
|+. .+.++.......+.... ...+.||+||+|+ ++.++...++.+.+
T Consensus 157 R~g----~s~eea~~Ri~~Q~~~~------ek~~~aD~VI~N~~~g~~~~L~~~v~~~~ 205 (244)
T PTZ00451 157 RNG----FSKEEALQRIGSQMPLE------EKRRLADYIIENDSADDLDELRGSVCDCV 205 (244)
T ss_pred cCC----CCHHHHHHHHHhCCCHH------HHHHhCCEEEECCCCCCHHHHHHHHHHHH
Confidence 853 34455555544432211 1267899999988 76655555554444
No 38
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=99.61 E-value=2.6e-16 Score=145.87 Aligned_cols=178 Identities=21% Similarity=0.320 Sum_probs=112.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH---
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME--- 102 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~--- 102 (473)
++|+|+|++||||||+++.|+. ++ +.+++.|.+.+.+.... .+.++.-.+...+..|...|.+.+-
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g---~~vid~D~i~~~~~~~~~~~~~~l~~~fg~~~~~~~g~idR~~L~~~vF~~~ 77 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EG---FLIVDADQVARDIVEPGQPALAELAEAFGDDILNPDGTLDRAGLAAKAFASP 77 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEeCcHHHHHHHhcCCHHHHHHHHHhCccccCCCChhhHHHHHHHHhCCH
Confidence 5899999999999999999987 44 99999997654432211 2334444444456677766655442
Q ss_pred -HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCCh
Q 035513 103 -KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 103 -~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
.+..-+.+.+|.........+.... ..+..++++|.+. +.+..+...+|.+||+++|.+++.+|+.+|+ +.+.
T Consensus 78 ~~~~~le~i~hP~v~~~~~~~~~~~~-~~~~~~vv~e~pl-L~e~g~~~~~D~vi~V~a~~e~ri~Rl~~R~----g~s~ 151 (200)
T PRK14734 78 EQTALLNAITHPRIAEETARRFNEAR-AQGAKVAVYDMPL-LVEKGLDRKMDLVVVVDVDVEERVRRLVEKR----GLDE 151 (200)
T ss_pred HHHHHHHHhhCHHHHHHHHHHHHHHH-hcCCCEEEEEeec-eeEcCccccCCeEEEEECCHHHHHHHHHHcC----CCCH
Confidence 2222334555655433332221111 1234677777444 4456777789999999999999999999985 3455
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhh
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQ 226 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~ 226 (473)
+.....+.......+ ....||++|+|+++.+...+++.+
T Consensus 152 e~~~~ri~~Q~~~~~------k~~~ad~vI~N~g~~e~l~~~v~~ 190 (200)
T PRK14734 152 DDARRRIAAQIPDDV------RLKAADIVVDNNGTREQLLAQVDG 190 (200)
T ss_pred HHHHHHHHhcCCHHH------HHHhCCEEEECcCCHHHHHHHHHH
Confidence 555555544433211 157899999988665544444433
No 39
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=99.60 E-value=1.2e-14 Score=144.68 Aligned_cols=168 Identities=21% Similarity=0.391 Sum_probs=115.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHhhccCc--------cCCCCccccHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEKLQNLHDY--------NFDHPDAFDTELLLS 99 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~~~~~~~~--------~f~~~~~~d~~~l~~ 99 (473)
++|.+|||+|++||||||+++.|...+.. ..+..|+.|+|| ++.+++...... ..+.|+.+|...+.+
T Consensus 210 ~~PlIIGIsG~qGSGKSTLa~~L~~lL~~~g~~vgvISiDDfY--Lt~eer~kL~~~nP~n~LL~~RG~PGTHDv~Lg~e 287 (460)
T PLN03046 210 IPPLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY--LTAEGQAELRERNPGNALLELRGNAGSHDLQFSVE 287 (460)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcccCCceEEEEECCcc--CChHHHHHHHhhCccchhhcccCCCccccHhhHHH
Confidence 46899999999999999999999887742 347889999999 444443332111 124578999988888
Q ss_pred HHHHh----hcCCceecccccccccc----cccc---ccccCCCcEEEEecccccCChh---------------------
Q 035513 100 DMEKL----KHGQAVSIPDYDFKSHK----RKQQ---SRLINPSDVFILEGILVLHDPR--------------------- 147 (473)
Q Consensus 100 ~l~~l----~~g~~i~~p~~~~~~~~----~~~~---~~~~~~~~viIlEG~~~l~~~~--------------------- 147 (473)
.+..+ ++|+.+.+|.||++.+. |... .....+.++||+|||+.+..+.
T Consensus 288 ~L~~L~~~lk~G~~V~iP~YDKs~h~GrgDR~~~~~W~~v~~P~DVIIfEGW~vG~~P~~~~~l~~~D~~l~~VN~~L~~ 367 (460)
T PLN03046 288 TLEALSKLTKEGIKMKVPRYDKSAYSGRGDRADPSTWPEVEGPLEVILFEGWMLGFKPLPNEVVKAVDPQLEVVNKNLEA 367 (460)
T ss_pred HHHHHHHHhhCCCeeecCCCCccccCCCCCCcCcccceeecCCCCEEEEcCHHhCCCCCChHHhhccChhHHHHHHHHHH
Confidence 88877 57889999999999966 4322 2234678999999999887541
Q ss_pred ----hhhccCeEEEEecCh-hHHHHHhhhcccccc-----CCChHHHHHHHHhhcccchhhhc
Q 035513 148 ----VRDLMSMKIFVDTDS-DVRLSRRIQRDTVER-----GRDIEDVLDQYARFVKPSFEEFI 200 (473)
Q Consensus 148 ----~~~~~Dl~I~L~~~~-e~~~~R~~~R~~~~~-----~~~~~~~~~~~~~~~~~~~~~~i 200 (473)
+...+|..|+|+++. +..++|+.++...-+ +.+ ++-..+|.+...|.|+.|.
T Consensus 368 Y~~~w~~~~D~li~L~a~d~~~Vy~WRlqQE~kLr~~gg~GMs-deqV~~FV~~YmPaY~~y~ 429 (460)
T PLN03046 368 YYDAWDKFIDAWVVIKIQDPSCVYQWRLQAEIAMRADGKPGMS-DEEVMDFVSRYLPAYKAYL 429 (460)
T ss_pred HHHHHHHhhceeEEeeCCChhHHHHHHHHHHHHHHHcCCCCCC-HHHHHHHHHHhhhHHHHHH
Confidence 122356777777764 767777665432211 233 3345556666667776663
No 40
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=99.58 E-value=4.9e-16 Score=143.37 Aligned_cols=173 Identities=23% Similarity=0.255 Sum_probs=112.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH----
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME---- 102 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~---- 102 (473)
+|+|+|++||||||+++.|++ ++ +.+++.|.+.+.+.... .+.++...+...+..|...|.+.+-
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g---~~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~i~~~~g~idr~~L~~~vF~~~~ 76 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LG---AFGISADRLAKRYTEPDSPILSELVSLLGPSILDENGKPNRKKISEIVFNDEE 76 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CC---CEEEecchHHHHHHhcCcHHHHHHHHHhChhhcCCCCccCHHHHHHHHhCCHH
Confidence 489999999999999999975 44 89999998876654321 2334444454456677776666542
Q ss_pred HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 103 KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 103 ~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.+..-+.+.+|.........+.. .....++++|. .++.+..+...+|.+||+++|.+++.+|+.+|+. .+.+
T Consensus 77 ~~~~L~~i~hP~v~~~~~~~~~~---~~~~~~vi~e~-pLL~E~~~~~~~D~vi~V~a~~e~r~~RL~~R~g----~s~e 148 (196)
T PRK14732 77 KLKALNELIHPLVRKDFQKILQT---TAEGKLVIWEV-PLLFETDAYTLCDATVTVDSDPEESILRTISRDG----MKKE 148 (196)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHH---HhcCCcEEEEe-eeeeEcCchhhCCEEEEEECCHHHHHHHHHHcCC----CCHH
Confidence 22333445667664433332221 12235777874 4455677788999999999999999999999964 3445
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhh
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLI 224 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i 224 (473)
+....+.... + .....+.||++|+|+++.+....++
T Consensus 149 ~a~~ri~~Q~-~-----~~~k~~~aD~vI~N~~~~~~l~~~v 184 (196)
T PRK14732 149 DVLARIASQL-P-----ITEKLKRADYIVRNDGNREGLKEEC 184 (196)
T ss_pred HHHHHHHHcC-C-----HHHHHHhCCEEEECCCCHHHHHHHH
Confidence 5555444322 1 1223678999999886544433333
No 41
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=99.57 E-value=1.1e-15 Score=142.69 Aligned_cols=182 Identities=21% Similarity=0.289 Sum_probs=107.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCC--Cc--cccHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDH--PD--AFDTELLL 98 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~--~~--~~d~~~l~ 98 (473)
..+++|||+|++||||||+++.|.+ ++ +.+++.|.+.+++.... ...++.-.+.. .+ ..|...+.
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g---~~v~d~D~i~~~~~~~~~~~~~~~~~~fg~~i~~~~~~~~~~idr~~l~ 78 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MG---CELFEADRVAKELQVTDPEVIEGIKKLFGKDVYSKDASGKLLLDRKRIA 78 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CC---CeEEeccHHHHHHcCCcHHHHHHHHHHhCHHHhCCCCCCCcccCHHHHH
Confidence 4568999999999999999999986 44 99999997665543211 11222211211 11 14544443
Q ss_pred HHH----HHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccc
Q 035513 99 SDM----EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 99 ~~l----~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
+.+ ..+..-+.+.+|.........+.... ..+..++++|++ ++++..+...+|.+|++++|.+++.+|+.+|+.
T Consensus 79 ~~vf~~~~~~~~l~~i~hp~i~~~~~~~i~~~~-~~~~~vvv~e~p-LL~e~~~~~~~d~ii~V~a~~e~~~~Rl~~R~~ 156 (208)
T PRK14731 79 QVVFSDPEKLGALNRLIHPKVFAAFQRAVDRAA-RRGKRILVKEAA-ILFESGGDAGLDFIVVVAADTELRLERAVQRGM 156 (208)
T ss_pred HHHhCCHHHHHHHHHHHCHHHHHHHHHHHHHHH-hcCCCEEEEEee-eeeecCchhcCCeEEEEECCHHHHHHHHHHcCC
Confidence 322 12222233445654433333222211 133468888877 445667778899999999999999999999964
Q ss_pred cccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhe
Q 035513 175 VERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQH 227 (473)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~ 227 (473)
. +.+......... .+.. .. .+.+|++|+|+++.++..+++.+.
T Consensus 157 ~----s~e~~~~Ri~~q-~~~~-~~----~~~ad~vI~N~g~~e~l~~~i~~~ 199 (208)
T PRK14731 157 G----SREEIRRRIAAQ-WPQE-KL----IERADYVIYNNGTLDELKAQTEQL 199 (208)
T ss_pred C----CHHHHHHHHHHc-CChH-HH----HHhCCEEEECCCCHHHHHHHHHHH
Confidence 2 334443333222 1111 11 356999999886655444444433
No 42
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=99.57 E-value=7.1e-15 Score=130.91 Aligned_cols=176 Identities=20% Similarity=0.315 Sum_probs=121.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
+..+|||+|.+.|||||||+.|.+.++ ++.+|+.||||+.....+....+-..|+.+++.|++.+.+.+..+..+...
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~--~~~lIhqDDFyKp~~Ei~v~~~n~~~wd~~esLdm~~fl~~ia~~l~~~~~ 80 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFP--GCSLIHQDDFYKPENEIEVDYNNIDNWDLLESLDMEKFLEKIATWLDSRHN 80 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHcc--CCeeeccccccCchhhhhcccCCcchhcchhhhhHHHHHHHHHHHhcCccc
Confidence 457999999999999999999999998 688999999998765544333344568889999999999888877765332
Q ss_pred ecccccccc-----cccc--ccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHH
Q 035513 111 SIPDYDFKS-----HKRK--QQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 111 ~~p~~~~~~-----~~~~--~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
. |.+.... .... .-+.......++++||...+..+.+.+.+|..|++..+.+++.+|+..|-.... ..
T Consensus 81 ~-~~ar~~~v~~~~~~~~~~~~q~~~~~~~iviidGfmiy~y~p~~~~~d~~im~~~~y~~~krRr~~Rt~y~p----~~ 155 (225)
T KOG3308|consen 81 A-PEAREHLVSYANFEHYAQQFQIKAYKNHIVIIDGFMIYNYKPQVDLFDRIIMLTLDYETCKRRREARTYYPP----DD 155 (225)
T ss_pred c-chHhhhhhhhhHHHHHhhhcCcccccCcEEEEecceEEecchhhhhhhhheeeeccHHHHHHhhcccccCCC----CC
Confidence 2 1110000 0000 012224567899999998888888889999999999999999999887744221 11
Q ss_pred HHHHHHhhcccchhhhcCCccccc--cEecccC
Q 035513 184 VLDQYARFVKPSFEEFILPSKKYA--DIIIPRG 214 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~a--d~vI~~~ 214 (473)
. -.+....+|.|..+..+....+ +..+.|+
T Consensus 156 t-gyfd~~~~P~Y~~~~~~~~d~~~h~~~flng 187 (225)
T KOG3308|consen 156 T-GYFDPVVWPHYEKNFEEARDRSRHDSLFLNG 187 (225)
T ss_pred C-ccccCccchHHHHHHHHHHhhcccceeeecc
Confidence 1 1122335677766655544443 5555554
No 43
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=99.57 E-value=8.6e-16 Score=141.35 Aligned_cols=181 Identities=20% Similarity=0.259 Sum_probs=105.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH--
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME-- 102 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~-- 102 (473)
+.+|||+|.+||||||+++.+++ ++ +.++++|++.|++.... ...++.-.....+.+|...|.+.+-
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G---~~vidaD~v~r~~~~~~~~~~~~i~~~fG~~i~~~dg~~~r~~L~~~vf~~ 77 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LG---FPVIDADDVAREVVEPGGEALQEIAERFGLEILDEDGGLDRRKLREKVFND 77 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cC---CeEEEccHHHHHHHhccchHHHHHHHHcCCcccCCCchhHHHHHHHHHcCC
Confidence 57999999999999999999998 66 99999999887543321 2222222121223344444433221
Q ss_pred --HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
....-+.+.+|....... .... .....++++| +.++.+......+|.+|.++||++++++|+++|+.. +
T Consensus 78 ~~~~~~Le~i~hPli~~~~~-~~~~---~~~~~~~~~e-iplL~e~~~~~~~d~Vi~V~a~~e~r~eRl~~R~~~----~ 148 (201)
T COG0237 78 PEARLKLEKILHPLIRAEIK-VVID---GARSPYVVLE-IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRDGL----D 148 (201)
T ss_pred HHHHHHHHHhhhHHHHHHHH-HHHH---HhhCCceEEE-chHHHhccccccCCEEEEEECCHHHHHHHHHhcCCC----C
Confidence 111112233343322221 1111 1112266666 555555555556899999999999999999999732 3
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeec
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
.+........+ .+..+. ...||+|++|+++.....+++.+.++..
T Consensus 149 ~e~~~~~~~~Q-~~~~ek-----~~~ad~vi~n~~~i~~l~~~i~~~~~~~ 193 (201)
T COG0237 149 EEDAEARLASQ-RDLEEK-----LALADVVIDNDGSIENLLEQIEKLLKEL 193 (201)
T ss_pred HHHHHHHHHhc-CCHHHH-----HhhcCChhhcCCCHHHHHHHHHHHHHHH
Confidence 22222222211 222222 4789999999977666555555554433
No 44
>PLN02796 D-glycerate 3-kinase
Probab=99.54 E-value=1.2e-13 Score=135.92 Aligned_cols=167 Identities=22% Similarity=0.400 Sum_probs=114.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCCCCCCHHHHhhccCc--------cCCCCccccHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDY--------NFDHPDAFDTELLLS 99 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~~~~~~~~~~~~~~~--------~f~~~~~~d~~~l~~ 99 (473)
+++.+|+|+|++||||||+++.|...+... ....++.|+|| ++...+..+..- ..+.|.++|..++.+
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~~~g~~~g~IsiDdfY--Lt~~e~~~L~~q~P~n~Ll~~RG~PgThDl~Ll~e 175 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFNATGRRAASLSIDDFY--LTAADQAKLAEANPGNALLELRGNAGSHDLALGVE 175 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhcccCCceeEEEECCcc--cchhhHHHHHhhCcchhhhhcCCCCchhHHHHHHH
Confidence 468999999999999999999999988643 47889999999 444433332211 124578999999999
Q ss_pred HHHHhh----cCCceecccccccccc----cccc-c--cccCCCcEEEEecccccCChh---------------------
Q 035513 100 DMEKLK----HGQAVSIPDYDFKSHK----RKQQ-S--RLINPSDVFILEGILVLHDPR--------------------- 147 (473)
Q Consensus 100 ~l~~l~----~g~~i~~p~~~~~~~~----~~~~-~--~~~~~~~viIlEG~~~l~~~~--------------------- 147 (473)
.+..++ .++.+.+|.||++.+. |... . ....+.++||+|||+.+..+.
T Consensus 176 ~L~~L~~~~~~g~~v~iP~yDks~~~g~gDR~~~~~w~~v~~p~dVII~EGw~vG~~p~~~~~l~~~~~~l~~vN~~L~~ 255 (347)
T PLN02796 176 TLEALRKLNKEGSKMKVPRYDKSAYGGRGDRADPSTWPEVEGPLDVVLFEGWMLGFKPLGPDAVKAVDPQLEVVNKNLEA 255 (347)
T ss_pred HHHHHHhhhcCCCceecCCCCccccCCCCCCcCcccceEecCCCCEEEEcCcccCCCCCChHHhhccChhHHHHHHHHHH
Confidence 999888 5788999999999976 3321 1 223678999999999887541
Q ss_pred ----hhhccCeEEEEecC-hhHHHHHhhhccc-----cccCCChHHHHHHHHhhcccchhhh
Q 035513 148 ----VRDLMSMKIFVDTD-SDVRLSRRIQRDT-----VERGRDIEDVLDQYARFVKPSFEEF 199 (473)
Q Consensus 148 ----~~~~~Dl~I~L~~~-~e~~~~R~~~R~~-----~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (473)
+...+|..|.|+++ .+..++++.+... ...+.+ ++-..+|.++..|.|+.|
T Consensus 256 y~~~w~~~~d~~i~L~a~~~~~v~~WR~qQE~~l~~~~~~gMs-de~v~~FV~~~mP~y~~y 316 (347)
T PLN02796 256 YYDAWDKLVDSWIVIKVDDPSWVYEWRLQAEIAMRAKGKPGMS-DEEVADFVSRYMPAYKAY 316 (347)
T ss_pred HHHHHHHhhceEEEEeCCCchHHHHHHHHHHHHHHHhCCCCCC-HHHHHHHHHHHHHHHHHH
Confidence 12345777888876 4555555543211 111333 333445555555666655
No 45
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=99.50 E-value=5.7e-15 Score=150.57 Aligned_cols=201 Identities=19% Similarity=0.248 Sum_probs=123.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH---
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME--- 102 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~--- 102 (473)
.+|+|+|++||||||+++.|++ ++ +.++++|.+.+++.... .+.++.-.+...+.+|...|.+.+-
T Consensus 2 ~~IgltG~igsGKStv~~~L~~-~G---~~vidaD~i~~~l~~~~~~~~~~i~~~fG~~il~~~G~idr~~L~~~vF~~~ 77 (395)
T PRK03333 2 LRIGLTGGIGAGKSTVAARLAE-LG---AVVVDADVLAREVVEPGTEGLAALVAAFGDDILLADGALDRPALAAKAFADD 77 (395)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CC---CeEEehHHHHHHHhcCChHHHHHHHHHhChHhcCCCCcCCHHHHHHHHhCCH
Confidence 5799999999999999999987 55 99999998876643321 2233333333446677766665542
Q ss_pred -HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCCh
Q 035513 103 -KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 103 -~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
.+..-+.+.+|.........+ ...+.+.++++++.++.+..+...+|.+|||++|.+++++|+.+|+. .+.
T Consensus 78 ~~~~~le~i~hP~I~~~i~~~i----~~~~~~~vvv~eipLL~E~~~~~~~D~iI~V~ap~e~ri~Rl~~rRg----~s~ 149 (395)
T PRK03333 78 EARAVLNGIVHPLVGARRAELI----AAAPEDAVVVEDIPLLVESGMAPLFHLVVVVDADVEVRVRRLVEQRG----MAE 149 (395)
T ss_pred HHHHHHHHhhhHHHHHHHHHHH----HhcCCCCEEEEEeeeeecCCchhhCCEEEEEECCHHHHHHHHHhcCC----CCH
Confidence 222223344554432222111 11123345555677777888888999999999999999999988543 344
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccccc--ccc----ccccceeeccccc
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQH--DLC----KIYSNVDVIVSTF 251 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~~--~l~----~~~~~v~v~~~~~ 251 (473)
+.....+..+.. ++ +....||++|+|+++.++...++.+.++..+..- .++ .....|.+++++|
T Consensus 150 ~~a~~ri~~Q~~--~e----~k~~~AD~vIdN~~s~e~l~~~v~~~l~~~~~~~~~~~~~~~~~~~~~v~v~~ydp 219 (395)
T PRK03333 150 ADARARIAAQAS--DE----QRRAVADVWLDNSGTPDELVEAVRALWADRLLPFAHNLRARRRAARAPPRLVPADP 219 (395)
T ss_pred HHHHHHHHhcCC--hH----HHHHhCCEEEECCCCHHHHHHHHHHHHHHHHhhHHHHHhcCCCCCCCCceEeCCCC
Confidence 444444433221 11 1267799999988766666666665555544321 111 2345577777765
No 46
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=99.49 E-value=1e-14 Score=134.24 Aligned_cols=173 Identities=23% Similarity=0.290 Sum_probs=108.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHH----H
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDM----E 102 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l----~ 102 (473)
+|+|+|.+||||||+++.|++..+ +.++++|.+.+.+.... .+.++.-.+...+..|...+.+.+ .
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~---~~~i~~D~~~~~~~~~~~~~~~~i~~~fg~~i~~~~g~idr~~L~~~vf~~~~ 77 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYH---FPVIDADKIAHQVVEKGSPAYEKIVDHFGAQILNEDGELDRKALGERVFNDPE 77 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcC---CeEEeCCHHHHHHHhcCChHHHHHHHHHCHHHhCCCCCCCHHHHHHHHhCCHH
Confidence 489999999999999999998754 89999999875543321 223333233334455655554443 1
Q ss_pred HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 103 KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 103 ~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.+..-+.+.+|.+.......+.... ....+++++.+. +.+..+...+|.+|++++|.+++.+|+.+|+ +.+.+
T Consensus 78 ~~~~le~ilhP~i~~~i~~~i~~~~--~~~~~vvi~~pl-l~e~~~~~~~D~vv~V~~~~~~~~~Rl~~R~----~~s~~ 150 (188)
T TIGR00152 78 ELKWLNNLLHPLIREWMKKLLAQFQ--SKLAYVLLDVPL-LFENKLRSLCDRVIVVDVSPQLQLERLMQRD----NLTEE 150 (188)
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHhh--cCCCEEEEEchH-hhhCCcHHhCCEEEEEECCHHHHHHHHHHcC----CCCHH
Confidence 1222234555655444433332211 122577787544 4445677889999999999999999999997 34555
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhh
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAID 222 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~ 222 (473)
.+...+.... +.+ .....||++|+|+++.++...
T Consensus 151 ~~~~r~~~q~-~~~-----~~~~~ad~vI~N~~~~e~l~~ 184 (188)
T TIGR00152 151 EVQKRLASQM-DIE-----ERLARADDVIDNSATLADLVK 184 (188)
T ss_pred HHHHHHHhcC-CHH-----HHHHhCCEEEECCCCHHHHHH
Confidence 5555554432 221 125679999998865544333
No 47
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.48 E-value=5.3e-14 Score=121.36 Aligned_cols=153 Identities=22% Similarity=0.376 Sum_probs=94.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH---HhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK---LQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~---~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
++|.|+|+|||||||+|+.||++++ +.+++.+.+++++..+. ..++.++.-.+
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~g---l~~vsaG~iFR~~A~e~gmsl~ef~~~AE~~--------------------- 56 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLG---LKLVSAGTIFREMARERGMSLEEFSRYAEED--------------------- 56 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhC---CceeeccHHHHHHHHHcCCCHHHHHHHHhcC---------------------
Confidence 3799999999999999999999998 99999999987655432 12222222222
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHH
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYA 189 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~ 189 (473)
|.+|...+.+.... ...+-+|+||-.+.+-. ....|+.|||.+|.+++.+|..+|+.. +.+....+..
T Consensus 57 ---p~iD~~iD~rq~e~---a~~~nvVlegrLA~Wi~--k~~adlkI~L~Apl~vRa~Ria~REgi----~~~~a~~~~~ 124 (179)
T COG1102 57 ---PEIDKEIDRRQKEL---AKEGNVVLEGRLAGWIV--REYADLKIWLKAPLEVRAERIAKREGI----DVDEALAETV 124 (179)
T ss_pred ---chhhHHHHHHHHHH---HHcCCeEEhhhhHHHHh--ccccceEEEEeCcHHHHHHHHHHhcCC----CHHHHHHHHH
Confidence 33333333332211 12456788875554321 245789999999999999999999753 3333333222
Q ss_pred hhc---ccchhhhc--CC-ccccccEecccCCCchhhh
Q 035513 190 RFV---KPSFEEFI--LP-SKKYADIIIPRGGDNDVAI 221 (473)
Q Consensus 190 ~~~---~~~~~~~i--~~-~~~~ad~vI~~~~~~~~~i 221 (473)
.+. +.+|..+. .. .....|+|||.+.-+++.+
T Consensus 125 ~RE~se~kRY~~~YgIDidDlSiyDLVinTs~~~~~~v 162 (179)
T COG1102 125 EREESEKKRYKKIYGIDIDDLSIYDLVINTSKWDPEEV 162 (179)
T ss_pred HHHHHHHHHHHHHhCCCCccceeeEEEEecccCCHHHH
Confidence 221 22333331 11 2466899999775444433
No 48
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=99.47 E-value=9.6e-14 Score=144.16 Aligned_cols=194 Identities=23% Similarity=0.261 Sum_probs=117.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhh
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLK 105 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~ 105 (473)
..+. ++++|+|.|+|||||||+|+.|+++++ +.+++.|++|+.+.....+. .+.++++..+ ..+.+.+....
T Consensus 279 ~~~~-~~~ii~i~G~sgsGKst~a~~la~~l~---~~~~d~g~~YR~~a~~~l~~--~~~~~~~~~l--~~l~~~l~~~~ 350 (512)
T PRK13477 279 FLMK-RQPIIAIDGPAGAGKSTVTRAVAKKLG---LLYLDTGAMYRAVTWLVLQE--GIDPQDEEAL--AELLSDLKIEL 350 (512)
T ss_pred Eecc-CCcEEEEECCCCCCHHHHHHHHHHHcC---CeEecCCceehHHHHHHHHc--CcCCcCHHHH--HHHHhcCCeee
Confidence 3444 678999999999999999999999997 99999999998765433332 1333332221 22222222111
Q ss_pred -----cCCceecccccccccccc---------------------ccccccCCCcEEEEecccccCChhhhhccCeEEEEe
Q 035513 106 -----HGQAVSIPDYDFKSHKRK---------------------QQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVD 159 (473)
Q Consensus 106 -----~g~~i~~p~~~~~~~~~~---------------------~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~ 159 (473)
.+..+.++.++...+.+. ..++......-+|+||--... .+....|++|||+
T Consensus 351 ~~~~~~~~~i~~~~~dv~~~iRs~eV~~~vS~ia~~p~VR~~l~~~qr~~~~~~~iV~eGRDigt--vV~P~AdlKIfL~ 428 (512)
T PRK13477 351 KPSSGSPQRVWINGEDVTEAIRSPEVTSSVSAIAAQPAVRQALVKQQQRIGEKGGLVAEGRDIGT--HVFPDAELKIFLT 428 (512)
T ss_pred ccCCCCCceEEeCCcchHhhhcchhHHHHHHHHhCCHHHHHHHHHHHHHHhhcCCEEEEccccee--EEcCCCCEEEEEE
Confidence 122455565554443321 111122223358999843221 1223358999999
Q ss_pred cChhHHHHHhhhccccccC---CChHHHHHHHHhhcccchhhhcCCcccc-ccEecccCC-Cchhhhhhhhheeee
Q 035513 160 TDSDVRLSRRIQRDTVERG---RDIEDVLDQYARFVKPSFEEFILPSKKY-ADIIIPRGG-DNDVAIDLIVQHILT 230 (473)
Q Consensus 160 ~~~e~~~~R~~~R~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~-~~~~~i~~i~~~I~~ 230 (473)
++++++.+|+..+.. .++ .+.+.+.+.+.++...+....+.|.... ++++|+++. +.++.++.+++.++.
T Consensus 429 As~evRa~RR~~~l~-~Rpll~~~~e~i~~~i~eRd~~D~~R~i~PLy~a~dai~IDTs~lsieeVv~~Il~~i~~ 503 (512)
T PRK13477 429 ASVEERARRRALDLQ-AQGFPVIDLEQLEAQIAERDRLDSTREIAPLRKADDAIELITDGLSIEEVVDKIIDLYRD 503 (512)
T ss_pred CCHHHHHHHHHhhhh-hCCCccCCHHHHHHHHHHHHhhhcccccccccccCCeEEEECCCCCHHHHHHHHHHHHHH
Confidence 999999999865521 223 2356777777777655555566665444 678898663 445556666666653
No 49
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=99.44 E-value=3e-14 Score=126.93 Aligned_cols=177 Identities=18% Similarity=0.297 Sum_probs=105.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHHH--
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDME-- 102 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l~-- 102 (473)
+.+||++|.+||||||+++.+. .++ +++|+.|...++.-... .+.++.-....-+..|++.+-+.+-
T Consensus 1 M~iVGLTGgiatGKStVs~~f~-~~G---~~vIDaD~vaR~vv~PG~p~~~~ive~FG~eiLl~~G~inR~~LG~~vF~~ 76 (225)
T KOG3220|consen 1 MLIVGLTGGIATGKSTVSQVFK-ALG---IPVIDADVVAREVVEPGTPAYRRIVEAFGTEILLEDGEINRKVLGKRVFSD 76 (225)
T ss_pred CeEEEeecccccChHHHHHHHH-HcC---CcEecHHHHHHHHhcCCChHHHHHHHHhCceeeccCCcccHHHHhHHHhCC
Confidence 4789999999999999999997 454 99999997665432211 1222222122223333333333221
Q ss_pred --HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
..+.-+.+.+|.+.+.....+.. ..+.+..++++|-+ ++++..+.+.+..+|.+.||.++.++|+..||...
T Consensus 77 ~~~r~~Ln~IthP~Ir~em~ke~~~-~~l~G~r~ivlDiP-LLFE~~~~~~~~~tvvV~cd~~~Ql~Rl~~Rd~ls---- 150 (225)
T KOG3220|consen 77 PKKRQALNKITHPAIRKEMFKEILK-LLLRGYRVIVLDIP-LLFEAKLLKICHKTVVVTCDEELQLERLVERDELS---- 150 (225)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHH-HHhcCCeEEEEech-HHHHHhHHhheeeEEEEEECcHHHHHHHHHhcccc----
Confidence 11112234445554333322211 12467899999944 45566788888899999999999999999997433
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhh
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLI 224 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i 224 (473)
.++..++...++ |.- ...+.||+||+|+++.+...+++
T Consensus 151 e~dAe~Rl~sQm-p~~-----~k~~~a~~Vi~Nng~~~~l~~qv 188 (225)
T KOG3220|consen 151 EEDAENRLQSQM-PLE-----KKCELADVVIDNNGSLEDLYEQV 188 (225)
T ss_pred HHHHHHHHHhcC-CHH-----HHHHhhheeecCCCChHHHHHHH
Confidence 333333332222 111 12578999999886655444433
No 50
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=99.38 E-value=2.4e-12 Score=113.13 Aligned_cols=144 Identities=20% Similarity=0.310 Sum_probs=93.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|.|+|++||||||+|+.|++.++ +.+++.|.+.. ............ ...+.+.+.....
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~---~~~~~~~~i~~----e~~~~~~~~~~~------~~~i~~~l~~~~~------- 60 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLG---LPYLDTGGIRT----EEVGKLASEVAA------IPEVRKALDERQR------- 60 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC---CceeccccCCH----HHHHHHHHHhcc------cHhHHHHHHHHHH-------
Confidence 589999999999999999999987 88999985431 111111000000 0111111111110
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccc-cCCChHHHHHHHHhhc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVE-RGRDIEDVLDQYARFV 192 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~ 192 (473)
.......+|+||.++.+. +...+|++||+++|++++.+|+.+|.... ++.+.++....+....
T Consensus 61 --------------~~~~~~~~Vidg~~~~~~--~~~~~~~~i~l~~~~~~r~~R~~~r~~~~~~~~~~~~~~~~~~~~d 124 (147)
T cd02020 61 --------------ELAKKPGIVLEGRDIGTV--VFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERD 124 (147)
T ss_pred --------------HHhhCCCEEEEeeeeeeE--EcCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Confidence 011123578888765332 23457899999999999999999976332 2557888888888887
Q ss_pred ccchhhhcCCcc-ccccEeccc
Q 035513 193 KPSFEEFILPSK-KYADIIIPR 213 (473)
Q Consensus 193 ~~~~~~~i~~~~-~~ad~vI~~ 213 (473)
.+.+..|..++. ...|++|+.
T Consensus 125 ~~~~~~~~~~~~~~~~dl~i~~ 146 (147)
T cd02020 125 ERDSTRYVAPLKLAEDAIVIDT 146 (147)
T ss_pred HHhhhcccccccCCCCcEEEeC
Confidence 777777877775 456788874
No 51
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=99.37 E-value=6.1e-12 Score=123.45 Aligned_cols=113 Identities=16% Similarity=0.237 Sum_probs=99.3
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++++|++.++|.+++.++.+.+++++++.+.-+|+..+... ..++|.+++|++|+|+|||++||+|+..|++.|++.
T Consensus 151 ~~~vvVspd~gg~~~a~~~a~~l~~~~~~~l~k~R~~~~~~~--~~~~~~~v~g~~viivDDii~TG~Tl~~a~~~l~~~ 228 (302)
T PLN02369 151 PDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVAE--VMNLIGDVKGKVAIMVDDMIDTAGTITKGAALLHQE 228 (302)
T ss_pred CceEEEEECcChHHHHHHHHHHcCCCCEEEEEEecCCcceee--eEecCCCCCCCEEEEEcCcccchHHHHHHHHHHHhC
Confidence 467999999999999999999999999999999997654322 347888999999999999999999999999999999
Q ss_pred CCCCCcEEEEE--EEeCHHHHHHHHHhCCCcEEEEEeec
Q 035513 391 GVPESNIIFLN--LIAAPQGIHAICKRFPKIKIVTSEID 427 (473)
Q Consensus 391 g~~~~~i~~~~--~~~~~~g~~~~~~~~p~v~i~~~~id 427 (473)
|+ ++|.+++ .++++++++++.+..++--++|-.+.
T Consensus 229 Ga--~~v~~~~tH~v~~~~a~~~l~~~~~~~iv~t~ti~ 265 (302)
T PLN02369 229 GA--REVYACATHAVFSPPAIERLSSGLFQEVIVTNTIP 265 (302)
T ss_pred CC--CEEEEEEEeeeeCHHHHHHHHhCCCCEEEEeCCCC
Confidence 99 7888888 79999999999998777777776664
No 52
>PRK01184 hypothetical protein; Provisional
Probab=99.36 E-value=1.7e-12 Score=118.94 Aligned_cols=173 Identities=14% Similarity=0.160 Sum_probs=90.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCcee
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~ 111 (473)
+++|+|+|++||||||+++ +++.++ +.++++|+.++...... ..............+....+.. .+
T Consensus 1 ~~~i~l~G~~GsGKsT~a~-~~~~~g---~~~i~~~d~lr~~~~~~-------~~~~~~~~~g~~~~~~~~~~~~--~~- 66 (184)
T PRK01184 1 MKIIGVVGMPGSGKGEFSK-IAREMG---IPVVVMGDVIREEVKKR-------GLEPTDENIGKVAIDLRKELGM--DA- 66 (184)
T ss_pred CcEEEEECCCCCCHHHHHH-HHHHcC---CcEEEhhHHHHHHHHHc-------CCCCCcHHHHHHHHHHHHHHCh--HH-
Confidence 3689999999999999998 667766 89999987764322110 0100000000001111111100 00
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCCh-hhhhccC---eEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-RVRDLMS---MKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~~~~~~D---l~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
+....+..+ ...+...+++||+....+. .+.+.++ .+|++++|.+++.+|+..|+......+.+....+
T Consensus 67 ---~~~~~~~~i----~~~~~~~vvidg~r~~~e~~~~~~~~~~~~~~i~v~~~~~~~~~Rl~~R~~~~d~~~~~~~~~r 139 (184)
T PRK01184 67 ---VAKRTVPKI----REKGDEVVVIDGVRGDAEVEYFRKEFPEDFILIAIHAPPEVRFERLKKRGRSDDPKSWEELEER 139 (184)
T ss_pred ---HHHHHHHHH----HhcCCCcEEEeCCCCHHHHHHHHHhCCcccEEEEEECCHHHHHHHHHHcCCCCChhhHHHHHHH
Confidence 000000001 1134578999997533222 2333444 8999999999999999988542211233333333
Q ss_pred HHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
........ .......||++|+|+++.++...++.+.+.
T Consensus 140 ~~~q~~~~----~~~~~~~ad~vI~N~~~~~~l~~~v~~~~~ 177 (184)
T PRK01184 140 DERELSWG----IGEVIALADYMIVNDSTLEEFRARVRKLLE 177 (184)
T ss_pred HHHHhccC----HHHHHHhcCEEEeCCCCHHHHHHHHHHHHH
Confidence 22211100 111246799999988665555555444443
No 53
>COG4240 Predicted kinase [General function prediction only]
Probab=99.36 E-value=8.2e-13 Score=119.83 Aligned_cols=117 Identities=26% Similarity=0.446 Sum_probs=87.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEecCCCCCCCCHHHHhhccC------ccCCCCccccHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD---QRVVLVNQDSFYHSLTDEKLQNLHD------YNFDHPDAFDTELLLS 99 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~---~~~~~is~D~~~~~~~~~~~~~~~~------~~f~~~~~~d~~~l~~ 99 (473)
.++|.++||+||.||||||++..|...+.. .....+|+||||.. +..+..+.+ ...+-|+.+|..++.+
T Consensus 47 ~grPli~gisGpQGSGKStls~~i~~~L~~kg~ert~~lSLDDlYlt--hadrl~La~q~npllq~RGlpGTHD~tlgln 124 (300)
T COG4240 47 RGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLT--HADRLRLARQVNPLLQTRGLPGTHDPTLGLN 124 (300)
T ss_pred cCCceEEEeecCCCCchhhHHHHHHHHHHHhcccceEEeehhhhhcc--hHHHHHHHHhcCchhcccCCCCCCchHHHHH
Confidence 356999999999999999999988766532 24788999999944 333222211 2356789999999999
Q ss_pred HHHHhhcCC-ceeccccccccc----ccc-ccccccCCCcEEEEecccccCChh
Q 035513 100 DMEKLKHGQ-AVSIPDYDFKSH----KRK-QQSRLINPSDVFILEGILVLHDPR 147 (473)
Q Consensus 100 ~l~~l~~g~-~i~~p~~~~~~~----~~~-~~~~~~~~~~viIlEG~~~l~~~~ 147 (473)
+|..+.+|. .|.+|.||++.. +|- ...+...+.+++|+|||+.+.+|.
T Consensus 125 VLnai~~g~~~V~lPrfDKS~f~gagDR~p~~q~ik~~vdivIlEGWfvGfrPi 178 (300)
T COG4240 125 VLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDIVILEGWFVGFRPI 178 (300)
T ss_pred HHHHHhcCCCCcccccccchhccCCCCCCCcccceecceeEEEEeeeeeecccC
Confidence 999999875 478999999554 342 223444558999999999988763
No 54
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=99.35 E-value=2.9e-12 Score=116.46 Aligned_cols=182 Identities=19% Similarity=0.295 Sum_probs=108.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhh------
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLK------ 105 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~------ 105 (473)
.++|+|.||+||||||+|+.|+++|+ +.+++++.+|+.+...-.... .. ..|.+.+.+.+..+.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg---~~yldTGamYRa~a~~~l~~~--~~-----~~d~~~~~~l~~~~~i~f~~~ 73 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLG---FHYLDTGAMYRAVALAALKHG--VD-----LDDEDALVALAKELDISFVND 73 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhC---CCeecccHHHHHHHHHHHHcC--CC-----CccHHHHHHHHHhCCceeccc
Confidence 48999999999999999999999998 999999999976543321111 00 111111222111111
Q ss_pred -----cCCce-----------------eccccccccccccccccccC-CCcEEEEecccccCChhhhhccCeEEEEecCh
Q 035513 106 -----HGQAV-----------------SIPDYDFKSHKRKQQSRLIN-PSDVFILEGILVLHDPRVRDLMSMKIFVDTDS 162 (473)
Q Consensus 106 -----~g~~i-----------------~~p~~~~~~~~~~~~~~~~~-~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~ 162 (473)
+|+.+ .+|.+. ......++... ...-+|+||--... .+....+++|||++++
T Consensus 74 ~~v~l~gedvs~~ir~~~V~~~aS~vA~~p~VR---~~l~~~Qr~~a~~~~~~V~dGRDiGT--vV~PdA~lKiFLtAS~ 148 (222)
T COG0283 74 DRVFLNGEDVSEEIRTEEVGNAASKVAAIPEVR---EALVKLQRAFAKNGPGIVADGRDIGT--VVFPDAELKIFLTASP 148 (222)
T ss_pred ceEEECCchhhhhhhhHHHHHHHHHHHccHHHH---HHHHHHHHHHHhcCCCEEEecCCCcc--eECCCCCeEEEEeCCH
Confidence 00000 001110 00012222222 33668999843221 1223346899999999
Q ss_pred hHHHHHhhhccccccC--CChHHHHHHHHhhcccchhhhcCCccccccE-ecccC-CCchhhhhhhhheee
Q 035513 163 DVRLSRRIQRDTVERG--RDIEDVLDQYARFVKPSFEEFILPSKKYADI-IIPRG-GDNDVAIDLIVQHIL 229 (473)
Q Consensus 163 e~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~-vI~~~-~~~~~~i~~i~~~I~ 229 (473)
++|-+|+.+... ..| ...++++.....+.+.+-..-..|.++..|- +|+++ .+.++.++.+++.++
T Consensus 149 e~RA~RR~~q~~-~~g~~~~~e~ll~eI~~RD~~D~~R~~~PLk~A~DA~~iDTs~msieeVv~~il~~~~ 218 (222)
T COG0283 149 EERAERRYKQLQ-AKGFSEVFEELLAEIKERDERDSNRAVAPLKPAEDALLLDTSSLSIEEVVEKILELIR 218 (222)
T ss_pred HHHHHHHHHHHH-hccCcchHHHHHHHHHHhhhccccCcCCCCcCCCCeEEEECCCCcHHHHHHHHHHHHH
Confidence 999999987643 333 2368888888888887777788888777775 44544 334455555554443
No 55
>PRK06217 hypothetical protein; Validated
Probab=99.35 E-value=8.2e-12 Score=114.39 Aligned_cols=106 Identities=24% Similarity=0.415 Sum_probs=72.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
+.|+|+|++||||||+|+.|++.++ +.++++|++++.-... .+....+.. ......+..+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~---~~~~~~D~~~~~~~~~------~~~~~~~~~---~~~~~~~~~~~------- 62 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLD---IPHLDTDDYFWLPTDP------PFTTKRPPE---ERLRLLLEDLR------- 62 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CcEEEcCceeeccCCC------CccccCCHH---HHHHHHHHHHh-------
Confidence 5699999999999999999999997 8999999998532110 000011111 11111112211
Q ss_pred cccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcccc
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTV 175 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~ 175 (473)
..+.+|+||.+......+...+|.+|||++|.+++++|+..|...
T Consensus 63 ------------------~~~~~vi~G~~~~~~~~~~~~~d~~i~Ld~~~~~~~~Rl~~R~~~ 107 (183)
T PRK06217 63 ------------------PREGWVLSGSALGWGDPLEPLFDLVVFLTIPPELRLERLRLREFQ 107 (183)
T ss_pred ------------------cCCCEEEEccHHHHHHHHHhhCCEEEEEECCHHHHHHHHHcCccc
Confidence 123578888876544455677899999999999999999998643
No 56
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=99.34 E-value=1.4e-12 Score=115.67 Aligned_cols=160 Identities=16% Similarity=0.237 Sum_probs=97.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHH-HHHHHHhhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELL-LSDMEKLKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l-~~~l~~l~~g~~i~ 111 (473)
..|.++|++||||||+++.||+.|+ ..++++|.++........+++ |...+.-.+..+ .+.+.++..
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~---~~F~D~D~~Ie~~~g~sI~eI----F~~~GE~~FR~~E~~vl~~l~~----- 70 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALN---LPFIDTDQEIEKRTGMSIAEI----FEEEGEEGFRRLETEVLKELLE----- 70 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcC---CCcccchHHHHHHHCcCHHHH----HHHHhHHHHHHHHHHHHHHHhh-----
Confidence 4589999999999999999999998 999999988743332222211 222222122122 233444432
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCChhhhhc---cCeEEEEecChhHHHHHhhhcccc--ccCCChHHHHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDL---MSMKIFVDTDSDVRLSRRIQRDTV--ERGRDIEDVLD 186 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~---~Dl~I~L~~~~e~~~~R~~~R~~~--~~~~~~~~~~~ 186 (473)
..+.||--|-.+...+..+.. ...+|||++|.++.++|+.....+ -...++.+.+.
T Consensus 71 -------------------~~~~ViaTGGG~v~~~enr~~l~~~g~vv~L~~~~e~l~~Rl~~~~~RPll~~~~~~~~l~ 131 (172)
T COG0703 71 -------------------EDNAVIATGGGAVLSEENRNLLKKRGIVVYLDAPFETLYERLQRDRKRPLLQTEDPREELE 131 (172)
T ss_pred -------------------cCCeEEECCCccccCHHHHHHHHhCCeEEEEeCCHHHHHHHhccccCCCcccCCChHHHHH
Confidence 123555556555555544333 237999999999999999732111 11223334344
Q ss_pred HHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 187 QYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
+.+....|.| .+.||++++.+..++..++++++.+..
T Consensus 132 ~L~~~R~~~Y-------~e~a~~~~~~~~~~~~v~~~i~~~l~~ 168 (172)
T COG0703 132 ELLEERQPLY-------REVADFIIDTDDRSEEVVEEILEALEG 168 (172)
T ss_pred HHHHHHHHHH-------HHhCcEEecCCCCcHHHHHHHHHHHHH
Confidence 4444445555 567999999776666666777666553
No 57
>PRK08118 topology modulation protein; Reviewed
Probab=99.33 E-value=6.4e-12 Score=113.17 Aligned_cols=101 Identities=19% Similarity=0.244 Sum_probs=70.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
..|.|.|++||||||+|+.|++.++ +.+++.|.+++... +.. ...+...+.+..+..
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~---~~~~~lD~l~~~~~-----------w~~---~~~~~~~~~~~~~~~------ 58 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN---IPVHHLDALFWKPN-----------WEG---VPKEEQITVQNELVK------ 58 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCceecchhhcccC-----------CcC---CCHHHHHHHHHHHhc------
Confidence 4699999999999999999999997 89999998874210 111 111122222332221
Q ss_pred cccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcccc
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTV 175 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~ 175 (473)
.+-+|+||.+..........+|.+|||++|.++++.|..+|...
T Consensus 59 -------------------~~~wVidG~~~~~~~~~l~~~d~vi~Ld~p~~~~~~R~~~R~~~ 102 (167)
T PRK08118 59 -------------------EDEWIIDGNYGGTMDIRLNAADTIIFLDIPRTICLYRAFKRRVQ 102 (167)
T ss_pred -------------------CCCEEEeCCcchHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHH
Confidence 23489999876433344467899999999999999999998543
No 58
>KOG2702 consensus Predicted panthothenate kinase/uridine kinase-related protein [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=99.32 E-value=1.1e-11 Score=112.60 Aligned_cols=159 Identities=21% Similarity=0.300 Sum_probs=119.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------CC-EEEEecCCCCCCCCHHHHhhcc-----CccCCCCcccc
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD---------QR-VVLVNQDSFYHSLTDEKLQNLH-----DYNFDHPDAFD 93 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~---------~~-~~~is~D~~~~~~~~~~~~~~~-----~~~f~~~~~~d 93 (473)
.+...++|++|++|+||||++..+.++.+. .+ ..++.+|.|+ ++.+....+. .--.+.|..||
T Consensus 116 ~n~~~l~glag~pGtgkst~~a~v~~aWp~~~~~f~~e~i~iaiivPMDGFH--lsr~~LD~f~dP~~AharRGapwTFD 193 (323)
T KOG2702|consen 116 SNNEELTGLAGRPGTGKSTRIAAVDNAWPVNVNKFAQESINIAIIVPMDGFH--LSRRCLDLFKDPQTAHARRGAPWTFD 193 (323)
T ss_pred ccchheeeeecCCCCcchhHHHHHHhhcchhhhhhhhhhcceeEEecccchh--hhHHHHHhhcChHHHHhhcCCCcccC
Confidence 345579999999999999999999886553 12 3458999998 5544432211 12245678899
Q ss_pred HHHHHHHHHHhh--cCCceecccccccccccccccccc-CCCcEEEEecccccCChh----hhhccCeEEEEecChhHHH
Q 035513 94 TELLLSDMEKLK--HGQAVSIPDYDFKSHKRKQQSRLI-NPSDVFILEGILVLHDPR----VRDLMSMKIFVDTDSDVRL 166 (473)
Q Consensus 94 ~~~l~~~l~~l~--~g~~i~~p~~~~~~~~~~~~~~~~-~~~~viIlEG~~~l~~~~----~~~~~Dl~I~L~~~~e~~~ 166 (473)
-+++.+.+..++ ....+..|.|++...+.+...... ....++|+||.|+++++. +-+.+|.++|++.+.++..
T Consensus 194 ~~lfl~l~k~lkk~t~~~iyvPsFdHa~gDPv~DdicVs~~~rIvI~EGnYlLl~~~~Wkdi~k~~d~k~~idV~~~~a~ 273 (323)
T KOG2702|consen 194 SNLFLQLCKILKKTTIPDIYVPSFDHALGDPVPDDICVSKFTRIVILEGNYLLLDQENWKDIYKTLDDKYKIDVDYEAAE 273 (323)
T ss_pred HHHHHHHHHHHhhcCCCceeccccccccCCCCccceeecccceEEEEeccEEEecCccHHHHHHHhhhheeccccHHHHH
Confidence 999999988888 456799999999999988665553 457899999999988763 3466789999999999999
Q ss_pred HHhhhccccccC--CChHHHHHHHHh
Q 035513 167 SRRIQRDTVERG--RDIEDVLDQYAR 190 (473)
Q Consensus 167 ~R~~~R~~~~~~--~~~~~~~~~~~~ 190 (473)
+|..+|.... | .++++..+++..
T Consensus 274 ~RVa~RHl~s-Gl~~t~~ea~er~d~ 298 (323)
T KOG2702|consen 274 ERVAKRHLQS-GLVTTIAEARERFDS 298 (323)
T ss_pred HHHHHHhhcc-cccCCHHHHHhhccc
Confidence 9999997643 4 455555544443
No 59
>PRK06762 hypothetical protein; Provisional
Probab=99.29 E-value=3e-11 Score=108.76 Aligned_cols=152 Identities=22% Similarity=0.257 Sum_probs=87.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCcee
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~ 111 (473)
+.+|+|+|++||||||+|+.|++.++ .++.+++.|.+.+.+.. .++.++....+.+.+.....
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~-~~~~~i~~D~~r~~l~~---------~~~~~~~~~~~~~~~~~~~~------- 64 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLG-RGTLLVSQDVVRRDMLR---------VKDGPGNLSIDLIEQLVRYG------- 64 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEecHHHHHHHhcc---------ccCCCCCcCHHHHHHHHHHH-------
Confidence 57899999999999999999999984 25888888776532211 11223333333333322211
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCC--h---hhhhcc---CeEEEEecChhHHHHHhhhccccccCCChHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD--P---RVRDLM---SMKIFVDTDSDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~--~---~~~~~~---Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
+.....+|+|+.+.-.. . .+.... ...||+++|.+++++|..+|+. .+....+.
T Consensus 65 -----------------~~~g~~vild~~~~~~~~~~~~~~l~~~~~~~~~~v~Ldap~e~~~~R~~~R~~-~~~~~~~~ 126 (166)
T PRK06762 65 -----------------LGHCEFVILEGILNSDRYGPMLKELIHLFRGNAYTYYFDLSFEETLRRHSTRPK-SHEFGEDD 126 (166)
T ss_pred -----------------HhCCCEEEEchhhccHhHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHhcccc-cccCCHHH
Confidence 12345677787643211 1 122222 3799999999999999999964 22333444
Q ss_pred HHHHHHhhcccchhhhcCCccccccEecccC-CCchhhhhhhhhee
Q 035513 184 VLDQYARFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHI 228 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I 228 (473)
+..+|..... ...++.+++++ ...++.++++++.+
T Consensus 127 l~~~~~~~~~----------~~~~~~~~~~~~~~~~~v~~~i~~~~ 162 (166)
T PRK06762 127 MRRWWNPHDT----------LGVIGETIFTDNLSLKDIFDAILTDI 162 (166)
T ss_pred HHHHHhhcCC----------cCCCCeEEecCCCCHHHHHHHHHHHh
Confidence 4445544322 12256666544 34444555555443
No 60
>PRK13949 shikimate kinase; Provisional
Probab=99.29 E-value=4.8e-12 Score=114.24 Aligned_cols=158 Identities=19% Similarity=0.227 Sum_probs=85.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCcc-ccHHHHHHHHHHhhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA-FDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~-~d~~~l~~~l~~l~~g~~i~ 111 (473)
..|+|.|++||||||+++.|++.++ +.++++|.+++......... .|...+. ...+...+.+..+.
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~---~~~id~D~~i~~~~~~~~~~----~~~~~g~~~fr~~e~~~l~~l~------ 68 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELG---LSFIDLDFFIENRFHKTVGD----IFAERGEAVFRELERNMLHEVA------ 68 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC---CCeecccHHHHHHHCccHHH----HHHHhCHHHHHHHHHHHHHHHH------
Confidence 3699999999999999999999997 89999997663211111000 0111111 01111112222221
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCCh---hhhhccCeEEEEecChhHHHHHhhhcccccc----CCChHHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---RVRDLMSMKIFVDTDSDVRLSRRIQRDTVER----GRDIEDV 184 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~----~~~~~~~ 184 (473)
.....||..|......+ ......+++|||++|.++.++|+..+.. .| +...+..
T Consensus 69 ------------------~~~~~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~~~~Ri~~~~~-~RP~~~~~~~~~~ 129 (169)
T PRK13949 69 ------------------EFEDVVISTGGGAPCFFDNMELMNASGTTVYLKVSPEVLFVRLRLAKQ-QRPLLKGKSDEEL 129 (169)
T ss_pred ------------------hCCCEEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHHHHHHHhcCCC-CCCCCCCCChHHH
Confidence 11345565665443333 2344568999999999999999864211 12 1111222
Q ss_pred HHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhhe
Q 035513 185 LDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQH 227 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~ 227 (473)
.+. ....|+.+...|.+ ||++|+.+. +.++.++.+++.
T Consensus 130 ~~~----i~~l~~~R~~~Y~~-ad~~id~~~~~~~e~~~~I~~~ 168 (169)
T PRK13949 130 LDF----IIEALEKRAPFYRQ-AKIIFNADKLEDESQIEQLVQR 168 (169)
T ss_pred HHH----HHHHHHHHHHHHHh-CCEEEECCCCCHHHHHHHHHHh
Confidence 111 11223333333344 899998663 444556665543
No 61
>TIGR01203 HGPRTase hypoxanthine phosphoribosyltransferase. Sequence differences as small as a single residue can affect whether members of this family act on hypoxanthine and guanine or hypoxanthine only. The designation of this model as equivalog reflects hypoxanthine specificity and does not reflect whether or not guanine can replace hypoxanthine.
Probab=99.28 E-value=2.2e-11 Score=109.29 Aligned_cols=96 Identities=15% Similarity=0.288 Sum_probs=83.5
Q ss_pred ceeeEEEeeccCchhHHHHHhhcC-CceeeEEEEE--EcC-CCC-ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHH
Q 035513 311 RRLCGISIIRSGESMENALRACCK-GIKIGKILIH--REG-NSG-RQLIYQKLPADISSRHVLLLDPILASGNSAVKAIS 385 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~~--r~~-~~~-~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~ 385 (473)
.++++|+|+|+|+++...+.+.++ .+.++++.++ |+. ++. ....+.++|.+++|++|+|+|||++||+|+.++++
T Consensus 26 ~~~vvv~i~~GG~~~a~~l~~~L~~~~~v~~i~~~~Y~~~~~~~~~~~~~~~~~~~~~gk~vlivDDii~TG~Tl~~~~~ 105 (166)
T TIGR01203 26 KPLVLLCVLKGSFPFFADLIRYIAVPVQVDFMAVSSYGNGMQSSGDVKILKDLDLSIKGKDVLIVEDIVDTGLTLQYLLD 105 (166)
T ss_pred CCeEEEEEccCCHHHHHHHHHhcCCCceeeEEEEeeccCCCcccCceEEecCCCCCCCCCEEEEEeeeeCcHHHHHHHHH
Confidence 357899999999999999999998 6789999988 433 222 34556778889999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEEEeCHHH
Q 035513 386 LILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 386 ~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
.|+++|+ ++|.++|++..+.+
T Consensus 106 ~l~~~g~--~~i~~~~l~~k~~~ 126 (166)
T TIGR01203 106 LLKARKP--KSLKIVTLLDKPSR 126 (166)
T ss_pred HHHHCCC--CEEEEEEEEecCcc
Confidence 9999998 68999999999887
No 62
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=99.28 E-value=1e-12 Score=119.13 Aligned_cols=197 Identities=15% Similarity=0.197 Sum_probs=104.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC-EEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQR-VVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~-~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
..+|+|.|+.|+||||||+.|+++++..- +..+.-+-|. ..-.++..+|.|...--|=.+++.+....+..+..+
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~~E~vednp~L----~~FY~d~~~yaf~~QiyFL~~Rfk~~k~~~~~~~~i 79 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVFYELVEDNPFL----DLFYEDPERYAFLLQIYFLLNRFKKIKKALSDKNNI 79 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCceeeecccCChHH----HHHHHhHHHhhHHHHHHHHHHHHHHHHHHhcccccc
Confidence 57899999999999999999999998211 1111111111 111133333444322222223344444444433222
Q ss_pred ecc-ccccc-cccc-cccccccCCCcEEEEeccccc---CChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHH
Q 035513 111 SIP-DYDFK-SHKR-KQQSRLINPSDVFILEGILVL---HDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDV 184 (473)
Q Consensus 111 ~~p-~~~~~-~~~~-~~~~~~~~~~~viIlEG~~~l---~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~ 184 (473)
.-+ .|... .... ......+++.+.-...+.+.. ..+......|+.|||+++.++.++|+.+|+..-.-.....
T Consensus 80 ~drsI~eD~~lf~~~~~~~g~~~~~e~~~Y~~L~~~~~~~l~~~p~~PdllIyLd~~~e~~l~RI~~RgR~~E~~~~~~- 158 (216)
T COG1428 80 LDRSIFEDYFLFAKLNFAKGTLSPSEFKYYDDLYDNMLEELPYLPGRPDLLIYLDASLETLLRRIAKRGRPFEIDNFDE- 158 (216)
T ss_pred cCcchhhhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhccCCCCCCEEEEEeCCHHHHHHHHHHhCCCcccccccc-
Confidence 111 11111 0000 000001111111111111110 0011122568999999999999999999954322111111
Q ss_pred HHHHHhhcccchhhhcCCccccccEecccC----CCchhhhhhhhheeeeccc
Q 035513 185 LDQYARFVKPSFEEFILPSKKYADIIIPRG----GDNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~----~~~~~~i~~i~~~I~~~l~ 233 (473)
-.+|++.....|..|+..+..+.++.|+.+ ..+++++..++..|.+.+.
T Consensus 159 ~~~Y~~~l~~~Y~~~~~~~~~~~~l~i~~~~~D~~~~~~d~~~v~~~I~~~~~ 211 (216)
T COG1428 159 NKDYLKDLHRRYDDWFENYDACPVLGIDGDSIDFVNNEQDLEKVLDQILAKLK 211 (216)
T ss_pred hHHHHHHHHHHHHHHHHhcccCCeeeeccceecccCCHHHHHHHHHHHHHHHh
Confidence 157888888999999888777888888755 3567888888888776653
No 63
>PRK04182 cytidylate kinase; Provisional
Probab=99.27 E-value=3e-12 Score=116.56 Aligned_cols=166 Identities=22% Similarity=0.388 Sum_probs=85.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|+|+|.+||||||+|+.|++.++ +.++++|++++...... .. +...+.+ .... .+
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg---~~~id~~~~~~~~~~~~-------g~------~~~~~~~----~~~~----~~ 57 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLG---LKHVSAGEIFRELAKER-------GM------SLEEFNK----YAEE----DP 57 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CcEecHHHHHHHHHHHc-------CC------CHHHHHH----Hhhc----Cc
Confidence 799999999999999999999987 88998877664322110 00 0000000 0000 00
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhh--
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARF-- 191 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~-- 191 (473)
.+......... ........+|++|.+.... .....+++|||++|.+++.+|+..|+.. +...........
T Consensus 58 ~~~~~~~~~~~--~~~~~~~~~Vi~g~~~~~~--~~~~~~~~V~l~a~~e~~~~Rl~~r~~~----~~~~a~~~~~~~d~ 129 (180)
T PRK04182 58 EIDKEIDRRQL--EIAEKEDNVVLEGRLAGWM--AKDYADLKIWLKAPLEVRAERIAEREGI----SVEEALEETIEREE 129 (180)
T ss_pred hHHHHHHHHHH--HHHhcCCCEEEEEeecceE--ecCCCCEEEEEECCHHHHHHHHHhccCC----CHHHHHHHHHHHHH
Confidence 00000000000 0010223456677543221 1123678999999999999999888532 222221111111
Q ss_pred -cccchhhhc---CCccccccEecccCC-Cchhhhhhhhheeeec
Q 035513 192 -VKPSFEEFI---LPSKKYADIIIPRGG-DNDVAIDLIVQHILTK 231 (473)
Q Consensus 192 -~~~~~~~~i---~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~~ 231 (473)
....|..+. .+....+|++|+++. +.++.++.+.+.+...
T Consensus 130 ~~~~~~~~~~~~~~~~~~~~d~~idt~~~~~~~~~~~I~~~~~~~ 174 (180)
T PRK04182 130 SEAKRYKEYYGIDIDDLSIYDLVINTSRWDPEGVFDIILTAIDKL 174 (180)
T ss_pred HHHHHHHHHhCCCccccccccEEEECCCCCHHHHHHHHHHHHHHH
Confidence 111222221 122357999999764 3445556666655543
No 64
>PLN02200 adenylate kinase family protein
Probab=99.25 E-value=4.2e-11 Score=113.70 Aligned_cols=181 Identities=17% Similarity=0.264 Sum_probs=97.1
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH
Q 035513 24 STTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 24 ~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~ 103 (473)
..++.++.+.+|+|.|+|||||||+|+.|+++++ +.+++.+++++... .. . ..+...+.+ .
T Consensus 35 ~~~~~~~~~~ii~I~G~PGSGKsT~a~~La~~~g---~~his~gdllR~~i-------~~---~---s~~~~~i~~---~ 95 (234)
T PLN02200 35 GSSSKEKTPFITFVLGGPGSGKGTQCEKIVETFG---FKHLSAGDLLRREI-------AS---N---SEHGAMILN---T 95 (234)
T ss_pred cCCccCCCCEEEEEECCCCCCHHHHHHHHHHHhC---CeEEEccHHHHHHH-------hc---c---ChhHHHHHH---H
Confidence 3455566789999999999999999999999997 89999988874211 00 0 001111111 1
Q ss_pred hhcCCceeccccccccccccccccccCCCcEEEEecccccCChh--h----hhccCeEEEEecChhHHHHHhhhcccccc
Q 035513 104 LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--V----RDLMSMKIFVDTDSDVRLSRRIQRDTVER 177 (473)
Q Consensus 104 l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~--~----~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~ 177 (473)
+..|..+.-..........+. .....-+|+||.+.-..+. + ....|++||++++.+++.+|+..|.....
T Consensus 96 ~~~G~~vp~e~~~~~l~~~l~----~~~~~~~ILDG~Prt~~q~~~l~~~~~~~pd~vi~Ld~~~e~~~~Rl~~R~~~r~ 171 (234)
T PLN02200 96 IKEGKIVPSEVTVKLIQKEME----SSDNNKFLIDGFPRTEENRIAFERIIGAEPNVVLFFDCPEEEMVKRVLNRNQGRV 171 (234)
T ss_pred HHcCCCCcHHHHHHHHHHHHh----cCCCCeEEecCCcccHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHcCcCCCC
Confidence 222221110000000000111 1123458999965332211 1 12468999999999999999998853111
Q ss_pred CCChHH---HHHHHHhhcccchhhhcCCccccc-cEecccCCCchhhhhhhhheeeec
Q 035513 178 GRDIED---VLDQYARFVKPSFEEFILPSKKYA-DIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 178 ~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~a-d~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
..+.+. ..+.|.....+..+.| .... -++|+++.+.++..+.+.+.+...
T Consensus 172 dd~~e~~~~Rl~~y~~~~~pv~~~y----~~~~~~~~IDa~~~~eeV~~~v~~~l~~~ 225 (234)
T PLN02200 172 DDNIDTIKKRLKVFNALNLPVIDYY----SKKGKLYTINAVGTVDEIFEQVRPIFAAC 225 (234)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECCCCHHHHHHHHHHHHHHc
Confidence 222222 2334444433333333 2222 255665555555556666555443
No 65
>PRK00625 shikimate kinase; Provisional
Probab=99.24 E-value=1.1e-11 Score=111.99 Aligned_cols=141 Identities=13% Similarity=0.031 Sum_probs=78.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH----HHhhccCccCCCCccccHHHHH-HHHHHhhcCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE----KLQNLHDYNFDHPDAFDTELLL-SDMEKLKHGQ 108 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~----~~~~~~~~~f~~~~~~d~~~l~-~~l~~l~~g~ 108 (473)
.|.|+|.+||||||+++.|+++++ +.++++|++++..... ...+ .|...+...+..+. +.+..+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~---~~~id~D~~I~~~~g~~~~~~i~e----if~~~Ge~~fr~~E~~~l~~l~--- 71 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLS---LPFFDTDDLIVSNYHGALYSSPKE----IYQAYGEEGFCREEFLALTSLP--- 71 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CCEEEhhHHHHHHhCCCCCCCHHH----HHHHHCHHHHHHHHHHHHHHhc---
Confidence 589999999999999999999997 9999999876321100 0000 01111100000000 1111111
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCChhhhh---ccCeEEEEecChhHHHHHhhhccccccCCChHHHH
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD---LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~---~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~ 185 (473)
. .+.+|..|......+...+ ....+|||++|.++..+|+.+|+........+.+.
T Consensus 72 ---------------------~-~~~VIs~GGg~~~~~e~~~~l~~~~~Vv~L~~~~e~l~~Rl~~R~~~~~~~~~~~~~ 129 (173)
T PRK00625 72 ---------------------V-IPSIVALGGGTLMIEPSYAHIRNRGLLVLLSLPIATIYQRLQKRGLPERLKHAPSLE 129 (173)
T ss_pred ---------------------c-CCeEEECCCCccCCHHHHHHHhcCCEEEEEECCHHHHHHHHhcCCCCcccCcHHHHH
Confidence 1 2233433333333333222 23579999999999999999886543222333443
Q ss_pred HHHHhhcccchhhhcCCccccccEecccC
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~ 214 (473)
+.|.++ .+.| .+.||++|+.+
T Consensus 130 ~ll~~R-~~~Y-------~~~ad~~i~~~ 150 (173)
T PRK00625 130 EILSQR-IDRM-------RSIADYIFSLD 150 (173)
T ss_pred HHHHHH-HHHH-------HHHCCEEEeCC
Confidence 344333 3444 45689988755
No 66
>PRK00131 aroK shikimate kinase; Reviewed
Probab=99.24 E-value=1.6e-11 Score=111.14 Aligned_cols=163 Identities=16% Similarity=0.208 Sum_probs=87.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHGQ 108 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g~ 108 (473)
+.+..|+|+|++||||||+|+.|++.++ +.+++.|++.+.......... +...+...+ +...+.+..+..
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~---~~~~d~d~~~~~~~g~~~~~~----~~~~g~~~~~~~~~~~~~~l~~-- 72 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLG---YDFIDTDHLIEARAGKSIPEI----FEEEGEAAFRELEEEVLAELLA-- 72 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHcCCCHHHH----HHHHCHHHHHHHHHHHHHHHHh--
Confidence 4567899999999999999999999997 889999987632211110000 000000000 111122222221
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCChhhhh---ccCeEEEEecChhHHHHHhhhccccccC--CChHH
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD---LMSMKIFVDTDSDVRLSRRIQRDTVERG--RDIED 183 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~---~~Dl~I~L~~~~e~~~~R~~~R~~~~~~--~~~~~ 183 (473)
..+.++..|.........+. ...+.||+++|.+.+.+|+.+|...... ....+
T Consensus 73 ----------------------~~~~vi~~g~~~~~~~~~r~~l~~~~~~v~l~~~~~~~~~R~~~~~~r~~~~~~~~~~ 130 (175)
T PRK00131 73 ----------------------RHNLVISTGGGAVLREENRALLRERGTVVYLDASFEELLRRLRRDRNRPLLQTNDPKE 130 (175)
T ss_pred ----------------------cCCCEEEeCCCEeecHHHHHHHHhCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHH
Confidence 11223333322222232222 2358999999999999999876532111 12222
Q ss_pred HHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeee
Q 035513 184 VLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILT 230 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~ 230 (473)
...++.....+.| ...+|++|+.+. +.++..+.+++.++.
T Consensus 131 ~~~~~~~~~~~~~-------~~~~dl~idt~~~~~~e~~~~I~~~v~~ 171 (175)
T PRK00131 131 KLRDLYEERDPLY-------EEVADITVETDGRSPEEVVNEILEKLEA 171 (175)
T ss_pred HHHHHHHHHHHHH-------HhhcCeEEeCCCCCHHHHHHHHHHHHHh
Confidence 2333322222222 455899998653 445666677666654
No 67
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=99.23 E-value=8.9e-12 Score=112.52 Aligned_cols=161 Identities=21% Similarity=0.328 Sum_probs=85.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
++|+|+|++||||||+|+.|++.++ +.+++.|++++.+... .+ . +...+.+.. ...
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg---~~~~~~~~~~~~~~~~----~g---~------~~~~~~~~~---~~~----- 56 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLS---LKLISAGDIFRELAAK----MG---L------DLIEFLNYA---EEN----- 56 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcC---CceecHHHHHHHHHHH----cC---C------CHHHHHHHH---hcC-----
Confidence 3799999999999999999999987 8899988766433211 00 0 000000000 000
Q ss_pred cccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhh-
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARF- 191 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~- 191 (473)
|.+.......+. ........+|++|.+..+. +...+|++|||++|.+++.+|+.+|+.. +.+....++...
T Consensus 57 ~~~~~~~~~~i~--~~~~~~~~~Vi~g~~~~~~--~~~~~d~~v~v~a~~~~r~~R~~~R~~~----s~~~a~~~~~~~d 128 (171)
T TIGR02173 57 PEIDKKIDRRIH--EIALKEKNVVLESRLAGWI--VREYADVKIWLKAPLEVRARRIAKREGK----SLTVARSETIERE 128 (171)
T ss_pred cHHHHHHHHHHH--HHHhcCCCEEEEeccccee--ecCCcCEEEEEECCHHHHHHHHHHccCC----CHHHHHHHHHHHH
Confidence 000000000000 0011234567788764321 2345689999999999999999998643 233322222211
Q ss_pred --cccchhhhcCC---ccccccEecccCCC-chhhhhhhhh
Q 035513 192 --VKPSFEEFILP---SKKYADIIIPRGGD-NDVAIDLIVQ 226 (473)
Q Consensus 192 --~~~~~~~~i~~---~~~~ad~vI~~~~~-~~~~i~~i~~ 226 (473)
....|..+... .....|++|+.+.- .++ ++.+.+
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~ydl~i~t~~~~~~~-~~~i~~ 168 (171)
T TIGR02173 129 ESEKRRYLKFYGIDIDDLSIYDLVINTSNWDPNN-VDIILD 168 (171)
T ss_pred HHHHHHHHHHhCCCccccccccEEEECCCCCHHH-HHHHHH
Confidence 12223333222 23567999997743 334 544443
No 68
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=99.23 E-value=5.3e-11 Score=107.78 Aligned_cols=159 Identities=16% Similarity=0.228 Sum_probs=88.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g~~i 110 (473)
...|+|.|++||||||+++.|++.++ +.+++.|.......... . .+.|...+.-.+ +.-.+.+..+..
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~---~~~vd~D~~i~~~~g~~---i-~~~~~~~g~~~fr~~e~~~l~~l~~---- 72 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRTGAD---I-GWVFDVEGEEGFRDREEKVINELTE---- 72 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcC---CcEEECCchHHHHhCcC---H-hHHHHHhCHHHHHHHHHHHHHHHHh----
Confidence 45699999999999999999999987 89999997552211100 0 011111111000 001122222211
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChh---hhhccCeEEEEecChhHHHHHhhhccccc--cCCChHHHH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR---VRDLMSMKIFVDTDSDVRLSRRIQRDTVE--RGRDIEDVL 185 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~---~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~--~~~~~~~~~ 185 (473)
...+++.-|......+. +....+.+|||++|.+++++|...+..+. .+......+
T Consensus 73 --------------------~~~~vi~~ggg~v~~~~~~~~l~~~~~vv~L~~~~e~~~~Ri~~~~~rP~~~~~~~~~~~ 132 (172)
T PRK05057 73 --------------------KQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLQVDDPREVL 132 (172)
T ss_pred --------------------CCCEEEEcCCchhCCHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCHHHHH
Confidence 12234433433333332 33445789999999999999987543221 112223445
Q ss_pred HHHHhhcccchhhhcCCccccccEecccCCCc-hhhhhhhhhee
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRGGDN-DVAIDLIVQHI 228 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~-~~~i~~i~~~I 228 (473)
+.+.....|.| .+.||++|+.+..+ ++..+.+++.+
T Consensus 133 ~~l~~~R~~~Y-------~~~Ad~~idt~~~s~~ei~~~i~~~l 169 (172)
T PRK05057 133 EALANERNPLY-------EEIADVTIRTDDQSAKVVANQIIHML 169 (172)
T ss_pred HHHHHHHHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHH
Confidence 55545545555 45699999866433 34445555544
No 69
>PRK04040 adenylate kinase; Provisional
Probab=99.22 E-value=3.6e-11 Score=110.32 Aligned_cols=168 Identities=16% Similarity=0.205 Sum_probs=90.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-----HhhccCccCCCCccccHHH-HHHHHHHhh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-----LQNLHDYNFDHPDAFDTEL-LLSDMEKLK 105 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-----~~~~~~~~f~~~~~~d~~~-l~~~l~~l~ 105 (473)
+++|+|+|.+||||||+++.|++.++ .++.+++.+++++...... +..+..... .....+.. ..+.+..
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~-~~~~~~~~g~~~~~~a~~~g~~~~~d~~r~l~~--~~~~~~~~~a~~~i~~-- 76 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK-EDYKIVNFGDVMLEVAKEEGLVEHRDEMRKLPP--EEQKELQREAAERIAE-- 76 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc-cCCeEEecchHHHHHHHHcCCCCCHHHHhhCCh--hhhHHHHHHHHHHHHH--
Confidence 57899999999999999999999984 1388899988864321110 011111000 00000000 0011111
Q ss_pred cCCceeccccccccccccccccccCCCcEEEEecccccCCh---------h-hhh-ccCeEEEEecChhHHHHHhhhccc
Q 035513 106 HGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---------R-VRD-LMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---------~-~~~-~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
..+...+++||.+.+..+ . +.+ ..|.+|++++++++.++|+++...
T Consensus 77 -----------------------~~~~~~~~~~~h~~i~~~~g~~~~~~~~~~~~l~pd~ii~l~a~p~~i~~Rrl~d~~ 133 (188)
T PRK04040 77 -----------------------MAGEGPVIVDTHATIKTPAGYLPGLPEWVLEELNPDVIVLIEADPDEILMRRLRDET 133 (188)
T ss_pred -----------------------hhcCCCEEEeeeeeeccCCCCcCCCCHHHHhhcCCCEEEEEeCCHHHHHHHHhcccc
Confidence 123445677775532222 1 111 347899999999999999885211
Q ss_pred cccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhhee
Q 035513 175 VERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHI 228 (473)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I 228 (473)
+.|+......++.+.. ....|..++..+....+++|.|+. ..+.+++++++.|
T Consensus 134 R~R~~es~e~I~~~~~-~a~~~a~~~a~~~g~~~~iI~N~d~~~e~a~~~i~~ii 187 (188)
T PRK04040 134 RRRDVETEEDIEEHQE-MNRAAAMAYAVLTGATVKIVENREGLLEEAAEEIVEVL 187 (188)
T ss_pred cCCCCCCHHHHHHHHH-HHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHHHh
Confidence 1233222333333322 233333333334556788887772 2667777766554
No 70
>PRK00023 cmk cytidylate kinase; Provisional
Probab=99.20 E-value=2.5e-11 Score=114.71 Aligned_cols=187 Identities=19% Similarity=0.293 Sum_probs=100.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC----
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG---- 107 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g---- 107 (473)
+.+|+|.|++||||||+++.|++.++ +.+++.|++|+.+....... ..... +.+.+.+.+..+...
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~---~~~~~~~~~~r~~~~~~~~~--g~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLG---FHYLDTGAMYRAVALAALRH--GVDLE-----DEEALVALAAHLDISFESD 73 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CCcccCchhHHHHHHHHHHc--CCCCC-----CHHHHHHHHhcCCeEEecC
Confidence 47899999999999999999999998 99999999987543321111 11111 111112211111100
Q ss_pred ---Cceeccc------------------ccc--cccccc-ccccccCCCcEEEEecccccCChhhhhccCeEEEEecChh
Q 035513 108 ---QAVSIPD------------------YDF--KSHKRK-QQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSD 163 (473)
Q Consensus 108 ---~~i~~p~------------------~~~--~~~~~~-~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e 163 (473)
..+.+.. +.. ..+..+ ..+..+....-+|++|-+... .+....++.|||++|.+
T Consensus 74 ~~~~~~~~~~~~i~~~lr~~~i~~~~s~~a~~~~ir~~l~~~q~~ia~~~~~Vi~GR~~~~--~vl~~a~~~ifl~a~~e 151 (225)
T PRK00023 74 PGGQRVFLNGEDVTDEIRTEEVGNAASKVAAIPEVREALVERQRAFAREPGLVMDGRDIGT--VVFPDAELKIFLTASAE 151 (225)
T ss_pred CCcceEEECCcchHHhhChHHHHHHHHHHcCCHHHHHHHHHHHHHHhhCCCEEEEecChhe--EEeCCCCEEEEEECCHH
Confidence 0000000 000 000001 111112234468888875322 12233689999999999
Q ss_pred HHHHHhhhccccc-cCCChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhheeee
Q 035513 164 VRLSRRIQRDTVE-RGRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHILT 230 (473)
Q Consensus 164 ~~~~R~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I~~ 230 (473)
++.+|+.++.... .+.+.++..+....+.+.....++.+....+| ++|+++. +.++.++.+.+.++.
T Consensus 152 ~R~~Rr~~~~~~~g~~~~~~~~~~~i~~rD~~~~~r~~~~l~~~~d~l~IDTs~l~~ee~v~~I~~~i~~ 221 (225)
T PRK00023 152 ERAERRYKELQAKGISVDFEDLLAEIKERDERDSNRAVAPLKPAEDALLLDTSGLSIEEVVEKILALVEE 221 (225)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhhhhcccccccccCCEEEEECCCCCHHHHHHHHHHHHHH
Confidence 9988876653211 23455555555555554333444555455555 8888663 445566666655543
No 71
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=99.19 E-value=1.6e-11 Score=104.34 Aligned_cols=116 Identities=22% Similarity=0.275 Sum_probs=69.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|+|+|+|||||||+|+.|++.++ +.++++|+++......... .. .......+.+.+.+.+..+..
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~---~~~i~~d~~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~l~~~~~------- 66 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLG---FPVISMDDLIREPGWIERD-DD---EREYIDADIDLLDDILEQLQN------- 66 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT---CEEEEEHHHHCCGTHCHGC-TT---CCHHHHHHHHHHHHHHHHHHE-------
T ss_pred CEEEECCCCCCHHHHHHHHHHHHC---CeEEEecceEEeccccccC-cc---hhhHHHHHHHHHHHHHHhhhc-------
Confidence 689999999999999999999997 9999999943221111110 00 000011222333444443321
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChh-hhhccCeEEEEecChhHHHHHhhhccccccCC
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR-VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGR 179 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~-~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~ 179 (473)
......+++||.+. .... .....|..||++++.+.+..|+++|....+++
T Consensus 67 ---------------~~~~~~~ii~g~~~-~~~~~~~~~~~~~i~l~~~~~~~~~~~~~R~~~~~~r 117 (121)
T PF13207_consen 67 ---------------KPDNDNWIIDGSYE-SEMEIRLPEFDHVIYLDAPDEECRERRLKRRLRRRGR 117 (121)
T ss_dssp ---------------TTT--EEEEECCSC-HCCHSCCHHGGCEEEEEEEEHHHHHHHHHHHHHHEES
T ss_pred ---------------cCCCCeEEEeCCCc-cchhhhhhcCCEEEEEECCCHHHHHHHHHHHhHHcCC
Confidence 23567899999544 2211 22345689999999997777777775544443
No 72
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=99.19 E-value=3.6e-11 Score=110.33 Aligned_cols=170 Identities=15% Similarity=0.248 Sum_probs=87.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HH-hhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KL-QNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~-~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
..+|+|.|++||||||+|+.|++.++ +.+++.|++++..... .. ..... .+........+.+.+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~~g---~~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~---- 74 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEKYG---FTHLSTGDLLRAEVASGSERGKQLQA-IMESGDLVPLDTVLDLLKDA---- 74 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHhcCCHHHHHHHH-HHHCCCCCCHHHHHHHHHHH----
Confidence 46899999999999999999999987 8899988766331000 00 00000 00000000011111111100
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCCh--hh---hhccCeEEEEecChhHHHHHhhhcccc-ccCC-Ch
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RV---RDLMSMKIFVDTDSDVRLSRRIQRDTV-ERGR-DI 181 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~---~~~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~~-~~ 181 (473)
+ .........+|+||.+..... .+ ....|++||+++|.+++.+|+.+|... .+.. ..
T Consensus 75 --------------~--~~~~~~~~~~i~dg~~~~~~q~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~r~d~~~ 138 (188)
T TIGR01360 75 --------------M--VAALGTSKGFLIDGYPREVKQGEEFERRIGPPTLVLYFDCSEDTMVKRLLKRAETSGRVDDNE 138 (188)
T ss_pred --------------H--HcccCcCCeEEEeCCCCCHHHHHHHHHcCCCCCEEEEEECCHHHHHHHHHcccccCCCCCCCH
Confidence 0 011234567888986432111 11 124689999999999999999988642 2222 22
Q ss_pred HHHH---HHHHhhcccchhhhcCCccccccE-ecccCCCchhhhhhhhheee
Q 035513 182 EDVL---DQYARFVKPSFEEFILPSKKYADI-IIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 182 ~~~~---~~~~~~~~~~~~~~i~~~~~~ad~-vI~~~~~~~~~i~~i~~~I~ 229 (473)
+.+. ..|.....+.++.| ...+++ +|+++...++..+.+.+.+.
T Consensus 139 ~~~~~r~~~~~~~~~~~~~~y----~~~~~~~~id~~~~~~~v~~~i~~~l~ 186 (188)
T TIGR01360 139 KTIKKRLETYYKATEPVIAYY----ETKGKLRKINAEGTVDDVFLQVCTAID 186 (188)
T ss_pred HHHHHHHHHHHHhhHHHHHHH----HhCCCEEEEECCCCHHHHHHHHHHHHh
Confidence 2222 23333333333333 223344 55555455555566655543
No 73
>PRK13946 shikimate kinase; Provisional
Probab=99.18 E-value=5.2e-11 Score=109.13 Aligned_cols=164 Identities=17% Similarity=0.231 Sum_probs=90.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g~~i 110 (473)
+..|+++|.+||||||+++.|+++++ +.+++.|...+.........+ |...+.-.+ +.-.+.+..+.
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg---~~~id~D~~~~~~~g~~~~e~----~~~~ge~~~~~~e~~~l~~l~----- 77 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLG---LPFLDADTEIERAARMTIAEI----FAAYGEPEFRDLERRVIARLL----- 77 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC---CCeECcCHHHHHHhCCCHHHH----HHHHCHHHHHHHHHHHHHHHH-----
Confidence 45799999999999999999999997 899999964422111000000 000000000 11112222221
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChhhh---hccCeEEEEecChhHHHHHhhhccccc--cCCChHHHH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVR---DLMSMKIFVDTDSDVRLSRRIQRDTVE--RGRDIEDVL 185 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~---~~~Dl~I~L~~~~e~~~~R~~~R~~~~--~~~~~~~~~ 185 (473)
.....+|..|...+..+..+ ...+++|||++|.+++.+|+..|.... ........+
T Consensus 78 -------------------~~~~~Vi~~ggg~~~~~~~r~~l~~~~~~v~L~a~~e~~~~Rl~~r~~rp~~~~~~~~~~i 138 (184)
T PRK13946 78 -------------------KGGPLVLATGGGAFMNEETRAAIAEKGISVWLKADLDVLWERVSRRDTRPLLRTADPKETL 138 (184)
T ss_pred -------------------hcCCeEEECCCCCcCCHHHHHHHHcCCEEEEEECCHHHHHHHhcCCCCCCcCCCCChHHHH
Confidence 12345555554333334322 234689999999999999998775431 112223333
Q ss_pred HHHHhhcccchhhhcCCccccccEecccC-CCchhhhhhhhheeeecccc
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I~~~l~~ 234 (473)
.+......+.| ..+|++++.+ .+.++.++.+++.+...+.+
T Consensus 139 ~~~~~~R~~~y--------~~~dl~i~~~~~~~~~~~~~i~~~i~~~~~~ 180 (184)
T PRK13946 139 ARLMEERYPVY--------AEADLTVASRDVPKEVMADEVIEALAAYLEK 180 (184)
T ss_pred HHHHHHHHHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHHhhcc
Confidence 33222222322 3479988755 34456677777777655443
No 74
>PRK08356 hypothetical protein; Provisional
Probab=99.18 E-value=9.3e-11 Score=108.53 Aligned_cols=175 Identities=19% Similarity=0.258 Sum_probs=87.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCcccc----HHHHHHHHHHhhcC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD----TELLLSDMEKLKHG 107 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d----~~~l~~~l~~l~~g 107 (473)
.++|+|+|++||||||+|+.|++ ++ +.+++.++.++..... ....+.|.....+. .+.+.+.-..+.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~~-~g---~~~is~~~~~~~~~~~---~~~~~~f~~~~~~~~~~~~~~~~e~g~~~~-- 75 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFEE-KG---FCRVSCSDPLIDLLTH---NVSDYSWVPEVPFKGEPTRENLIELGRYLK-- 75 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHHH-CC---CcEEeCCCcccccccc---cccccccccHHHHhhccccccHHHHHHHHH--
Confidence 46899999999999999999964 54 7899998866443221 12223332111100 001111100000
Q ss_pred Cceecccccccc--ccccccccccCCCcEEEEecccccCChh-hhhccCeEEEEecChhHHHHHhhhccccccC--CChH
Q 035513 108 QAVSIPDYDFKS--HKRKQQSRLINPSDVFILEGILVLHDPR-VRDLMSMKIFVDTDSDVRLSRRIQRDTVERG--RDIE 182 (473)
Q Consensus 108 ~~i~~p~~~~~~--~~~~~~~~~~~~~~viIlEG~~~l~~~~-~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~--~~~~ 182 (473)
..|.-.. ...+.. ......+++||.....+.. +......+||+++|.+++.+|+..|+...+. .+.+
T Consensus 76 -----~~yG~~~~~~~~~~~---~~~~~~ividG~r~~~q~~~l~~~~~~vi~l~~~~~~~~~Rl~~R~~~~~~~~~~~e 147 (195)
T PRK08356 76 -----EKYGEDILIRLAVDK---KRNCKNIAIDGVRSRGEVEAIKRMGGKVIYVEAKPEIRFERLRRRGAEKDKGIKSFE 147 (195)
T ss_pred -----HhcCcHHHHHHHHHH---hccCCeEEEcCcCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHhcCCccccccccHH
Confidence 0010000 000000 1112358999885443222 2233358999999999999999988642211 1222
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhh
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQ 226 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~ 226 (473)
.....+..+ ...|.. ....+.||++|.|+++.++..+++.+
T Consensus 148 ~~~~~~~~~-~~l~~~--~~~~~~aD~vI~N~~~~e~~~~~i~~ 188 (195)
T PRK08356 148 DFLKFDEWE-EKLYHT--TKLKDKADFVIVNEGTLEELRKKVEE 188 (195)
T ss_pred HHHHHHHHH-HHhhhh--hhHHHhCcEEEECCCCHHHHHHHHHH
Confidence 222222111 111110 11246799999876555544444443
No 75
>PRK07261 topology modulation protein; Provisional
Probab=99.17 E-value=4.1e-11 Score=108.41 Aligned_cols=105 Identities=18% Similarity=0.253 Sum_probs=73.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
.|+|.|++||||||+|+.|++.++ +.+++.|.++.... +. ..+.+.+.+.+..+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~---~~~i~~D~~~~~~~-----------~~---~~~~~~~~~~~~~~~-------- 56 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYN---CPVLHLDTLHFQPN-----------WQ---ERDDDDMIADISNFL-------- 56 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhC---CCeEecCCEEeccc-----------cc---cCCHHHHHHHHHHHH--------
Confidence 589999999999999999999887 78899998763110 11 112222333333221
Q ss_pred ccccccccccccccccCCCcEEEEecccccCC-hhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHD-PRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~-~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
.... +|+||.+.... +.....+|.+||+++|..+++.|.++|....++..
T Consensus 57 ----------------~~~~-wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~rg~~ 107 (171)
T PRK07261 57 ----------------LKHD-WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKYRGKT 107 (171)
T ss_pred ----------------hCCC-EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHHcCCc
Confidence 2223 89999886422 34456789999999999999999999976555544
No 76
>PRK13948 shikimate kinase; Provisional
Probab=99.16 E-value=9.9e-11 Score=106.57 Aligned_cols=162 Identities=12% Similarity=0.156 Sum_probs=89.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHG 107 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g 107 (473)
+..+..|+++|.+||||||+++.|+++++ +.++++|.+.+........++ |...+.--+ +.-.+.+..+..
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg---~~~iD~D~~ie~~~g~si~~i----f~~~Ge~~fR~~E~~~l~~l~~- 78 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALM---LHFIDTDRYIERVTGKSIPEI----FRHLGEAYFRRCEAEVVRRLTR- 78 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEECCHHHHHHHhCCHHHH----HHHhCHHHHHHHHHHHHHHHHh-
Confidence 34567899999999999999999999997 899999987644332211111 211111111 111222333221
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhh---hhccCeEEEEecChhHHHHHhhhcc--ccccCCChH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV---RDLMSMKIFVDTDSDVRLSRRIQRD--TVERGRDIE 182 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~---~~~~Dl~I~L~~~~e~~~~R~~~R~--~~~~~~~~~ 182 (473)
....+|.-|......+.. ......+|||++++++..+|+..++ ........+
T Consensus 79 -----------------------~~~~VIa~GgG~v~~~~n~~~l~~~g~vV~L~~~~e~l~~Rl~~~~RPll~~~~~~~ 135 (182)
T PRK13948 79 -----------------------LDYAVISLGGGTFMHEENRRKLLSRGPVVVLWASPETIYERTRPGDRPLLQVEDPLG 135 (182)
T ss_pred -----------------------cCCeEEECCCcEEcCHHHHHHHHcCCeEEEEECCHHHHHHHhcCCCCCCCCCCChHH
Confidence 123344444333333322 2223579999999999999984321 111111223
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILT 230 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~ 230 (473)
.+.+.|.++ .+.| +.||++|+.+. +.++..+.+++.+..
T Consensus 136 ~l~~l~~~R-~~~Y--------~~a~~~i~t~~~~~~ei~~~i~~~l~~ 175 (182)
T PRK13948 136 RIRTLLNER-EPVY--------RQATIHVSTDGRRSEEVVEEIVEKLWA 175 (182)
T ss_pred HHHHHHHHH-HHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHH
Confidence 334444443 3333 33899998663 344555666655544
No 77
>PRK05205 bifunctional pyrimidine regulatory protein PyrR uracil phosphoribosyltransferase; Provisional
Probab=99.16 E-value=7.3e-11 Score=107.21 Aligned_cols=141 Identities=20% Similarity=0.343 Sum_probs=100.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-----ceeeE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-----IKIGK 340 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-----a~~g~ 340 (473)
+.+++...+.+|++.+... +.|. .++++|+|+|+|..+...+.+.++. +++++
T Consensus 8 s~~~i~~~i~~la~~i~~~-------------------~~~~---~~~viv~il~gG~~~a~~La~~L~~~~~~~~~~~~ 65 (176)
T PRK05205 8 DAEALRRALTRIAHEIIER-------------------NKGL---DNLVLVGIKTRGVWLAERLAERLEQLEGVDVPVGE 65 (176)
T ss_pred CHHHHHHHHHHHHHHHHHH-------------------cCCC---CCeEEEEEccCCHHHHHHHHHHHHHHcCCCCccce
Confidence 3456777777776666321 1111 3679999999999999999999963 34788
Q ss_pred EEEE--EcCCC--C--ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEe-----CHHHH
Q 035513 341 ILIH--REGNS--G--RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIA-----APQGI 409 (473)
Q Consensus 341 i~~~--r~~~~--~--~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~-----~~~g~ 409 (473)
+.+. |+... . ....+..+|.+++|++|+|+|||++||+|+.++++.|++.|++ ++|.+++++. .+.+.
T Consensus 66 l~~~~y~~~~~~~~~~~~~~~~~l~~~v~gr~VLIVDDIidTG~Tl~~~~~~L~~~G~~-~~v~~avL~~K~~~~~~~~~ 144 (176)
T PRK05205 66 LDITLYRDDLTKKGLHPQVKPTDIPFDIEGKRVILVDDVLYTGRTIRAALDALFDYGRP-ARVQLAVLVDRGHRELPIRA 144 (176)
T ss_pred EEEEEeecCccccCcccccccccCCCCCCCCEEEEEecccCcHHHHHHHHHHHHhcCCC-cEEEEEEEEECCCCcCCCCC
Confidence 6654 55432 1 2444677888899999999999999999999999999999954 7899999987 44455
Q ss_pred HHHHHhCCCc--EEEEEeecCC
Q 035513 410 HAICKRFPKI--KIVTSEIDSS 429 (473)
Q Consensus 410 ~~~~~~~p~v--~i~~~~id~~ 429 (473)
+.+...+|+. ..+-..+++.
T Consensus 145 Dyvg~~ip~~~~~~~~~~~~~~ 166 (176)
T PRK05205 145 DYVGKNIPTSRDERVVVRLAEV 166 (176)
T ss_pred CEEEEECCCCCCCEEEEEecCC
Confidence 5555555553 3444444543
No 78
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=99.16 E-value=1.6e-10 Score=105.75 Aligned_cols=118 Identities=21% Similarity=0.322 Sum_probs=67.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|.|.|+|||||||+|+.|+++++ +.+++++++++...... .. ....+.+. +.+|..+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~---~~~is~~d~lr~~~~~~-----------~~--~~~~~~~~---~~~g~~~~~~ 61 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFG---FTHLSAGDLLRAEIKSG-----------SE--NGELIESM---IKNGKIVPSE 61 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcC---CeEEECChHHHHHHhcC-----------Ch--HHHHHHHH---HHCCCcCCHH
Confidence 489999999999999999999997 99999988874321100 00 00001111 1112111100
Q ss_pred ccccccccccccccccCCCcEEEEecccccCCh--h---hh---hccCeEEEEecChhHHHHHhhhccc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--R---VR---DLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~---~~---~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
.. ...+...........+|+||.+.-... . +. ..+|++||+++|.+++++|+.+|..
T Consensus 62 ~~----~~ll~~~~~~~~~~~~vlDg~p~~~~q~~~~~~~~~~~~~~d~~i~l~~~~~~~~~Rl~~R~~ 126 (183)
T TIGR01359 62 VT----VKLLKNAIQADGSKKFLIDGFPRNEENLEAWEKLMDNKVNFKFVLFFDCPEEVMIKRLLKRGQ 126 (183)
T ss_pred HH----HHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCCc
Confidence 00 000000000011456899997542211 1 11 1467899999999999999999864
No 79
>PRK05541 adenylylsulfate kinase; Provisional
Probab=99.15 E-value=6e-11 Score=107.91 Aligned_cols=43 Identities=28% Similarity=0.444 Sum_probs=34.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFY 70 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~ 70 (473)
+.+++.+|+++|++||||||+++.|++.+.. .++.+++.|.+.
T Consensus 3 ~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r 47 (176)
T PRK05541 3 MKPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELR 47 (176)
T ss_pred CCCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHH
Confidence 4567789999999999999999999998853 346677766653
No 80
>PRK03839 putative kinase; Provisional
Probab=99.15 E-value=3e-10 Score=103.65 Aligned_cols=100 Identities=20% Similarity=0.256 Sum_probs=65.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
.|.|+|+|||||||+++.|+++++ +.++++|++++... ... .+.......+..+.+.+...
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~---~~~id~d~~~~~~~------~~~-~~~~~~~~~~~~l~~~~~~~--------- 62 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLG---YEYVDLTEFALKKG------IGE-EKDDEMEIDFDKLAYFIEEE--------- 62 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEehhhhhhhcC------Ccc-cCChhhhcCHHHHHHHHHHh---------
Confidence 589999999999999999999997 99999999874311 111 12111122223332222211
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
.. ...+|++|.+... ...|++|||+++++++.+|+..|.
T Consensus 63 ---------------~~-~~~vIidG~~~~l-----~~~~~vi~L~~~~~~~~~Rl~~R~ 101 (180)
T PRK03839 63 ---------------FK-EKNVVLDGHLSHL-----LPVDYVIVLRAHPKIIKERLKERG 101 (180)
T ss_pred ---------------cc-CCCEEEEeccccc-----cCCCEEEEEECCHHHHHHHHHHcC
Confidence 01 2236778754321 235789999999999999998874
No 81
>KOG2878 consensus Predicted kinase [General function prediction only]
Probab=99.14 E-value=3.1e-10 Score=101.15 Aligned_cols=113 Identities=27% Similarity=0.444 Sum_probs=83.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh-----CCCCEEEEecCCCCCCCCHHHHhhccC--------ccCCCCccccHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL-----RDQRVVLVNQDSFYHSLTDEKLQNLHD--------YNFDHPDAFDTELLL 98 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l-----~~~~~~~is~D~~~~~~~~~~~~~~~~--------~~f~~~~~~d~~~l~ 98 (473)
|.+|+++||.||||||++-+|-.++ ++.....+|.|||| ++++...++.+ -..+.++++|..++.
T Consensus 31 Pl~igfSgPQGsGKstl~~ald~~lt~Ky~~E~s~~~~SvDDFY--LThe~Q~eL~k~npnN~Llq~RGlaGtHD~kll~ 108 (282)
T KOG2878|consen 31 PLVIGFSGPQGSGKSTLVFALDYKLTKKYIQEYSSATISVDDFY--LTHEGQAELRKKNPNNALLQYRGLAGTHDLKLLV 108 (282)
T ss_pred cEEEEecCCCCCCceeehhhhHHHHHHHhccccceEEEEeccee--eechhHHHHHhhCCCChhhccCCCCCcccHHHHH
Confidence 8999999999999999998775443 23468889999999 66554333222 124568899999999
Q ss_pred HHHHHhhcC----Cceecccccccccccc-----cccc-ccCCCcEEEEecccccCCh
Q 035513 99 SDMEKLKHG----QAVSIPDYDFKSHKRK-----QQSR-LINPSDVFILEGILVLHDP 146 (473)
Q Consensus 99 ~~l~~l~~g----~~i~~p~~~~~~~~~~-----~~~~-~~~~~~viIlEG~~~l~~~ 146 (473)
+.|..+..+ ..+.+|.|+++..... ..++ .+.+.+++|+|||++.+.|
T Consensus 109 evLna~~k~~~d~~~v~vP~YdKS~f~G~GDR~d~sqw~k~~P~~~~ifEGWmlGF~P 166 (282)
T KOG2878|consen 109 EVLNALSKLTKDGLKVKVPRYDKSAFSGRGDRADSSQWPKVEPLSVIIFEGWMLGFKP 166 (282)
T ss_pred HHHHHHHcCCcccceEeccccchhhccCCCCCCccccCcccCceeEEEEecccccccc
Confidence 999888764 3588999998865432 1122 2446789999999988776
No 82
>PRK13947 shikimate kinase; Provisional
Probab=99.12 E-value=2.9e-10 Score=102.79 Aligned_cols=37 Identities=24% Similarity=0.295 Sum_probs=33.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSL 73 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~ 73 (473)
.|+|.|++||||||+|+.|++.++ +.+++.|.+.+..
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg---~~~id~d~~~~~~ 39 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLS---FGFIDTDKEIEKM 39 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhC---CCEEECchhhhhh
Confidence 599999999999999999999997 8999999877543
No 83
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=99.11 E-value=3.8e-10 Score=103.61 Aligned_cols=169 Identities=11% Similarity=0.107 Sum_probs=86.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
.+|+|.|+|||||||+++.|+..++ ..++..|.......... ...+.+..++.+ .+ .+..+.....
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~---~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~-----~~---~~~~~~~~~~ 68 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQ---TQLLVAHRYITRPASAG---SENHIALSEQEF-----FT---RAGQNLFALS 68 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC---CeEEEcCEECCCccchh---HHhheeEcHHHH-----HH---HHHCCchhhH
Confidence 5799999999999999999998765 35555665553322211 112222222211 11 1111111000
Q ss_pred ccc---ccccccccccccccCCCcEEEEecccccCChhhhhcc---CeEEEEecChhHHHHHhhhccccccCCChHHHHH
Q 035513 113 PDY---DFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM---SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLD 186 (473)
Q Consensus 113 p~~---~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~---Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 186 (473)
..+ ...+...+... +.....+|++|..... ..+...+ -.+||+++|.+++.+|+..|+. ...+.+..
T Consensus 69 ~~~~g~~yg~~~~~~~~--l~~g~~VI~~G~~~~~-~~~~~~~~~~~~vi~l~~s~e~l~~RL~~R~~----~~~~~i~~ 141 (186)
T PRK10078 69 WHANGLYYGVGIEIDLW--LHAGFDVLVNGSRAHL-PQARARYQSALLPVCLQVSPEILRQRLENRGR----ENASEINA 141 (186)
T ss_pred HHHhCCccCCcHHHHHH--HhCCCEEEEeChHHHH-HHHHHHcCCCEEEEEEeCCHHHHHHHHHHhCC----CCHHHHHH
Confidence 000 01111112222 2223446667764332 2222222 2579999999999999988742 13344444
Q ss_pred HHHhhcccchhhhcCCcccccc-EecccCCCchhhhhhhhheeeecc
Q 035513 187 QYARFVKPSFEEFILPSKKYAD-IIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
++... +. ...+| ++|+++++.++..+++.+.+....
T Consensus 142 rl~r~--~~--------~~~ad~~vi~~~~s~ee~~~~i~~~l~~~~ 178 (186)
T PRK10078 142 RLARA--AR--------YQPQDCHTLNNDGSLRQSVDTLLTLLHLSQ 178 (186)
T ss_pred HHHHh--hh--------hccCCEEEEeCCCCHHHHHHHHHHHHhhcC
Confidence 44221 11 12456 677766566666666666665443
No 84
>PRK03092 ribose-phosphate pyrophosphokinase; Provisional
Probab=99.11 E-value=1.1e-09 Score=107.79 Aligned_cols=103 Identities=13% Similarity=0.207 Sum_probs=90.8
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++++|+...+|..+...+.+.++.++++++..+|+..+.....+.+++.+++|++|+|+|||++||+|+..|++.|+++
T Consensus 148 ~~~vvVspd~Ga~~~a~~la~~L~~~~~~~i~k~R~~~~~~~~~~~~~~~dv~gr~viIVDDIi~TG~Tl~~aa~~Lk~~ 227 (304)
T PRK03092 148 DNVTVVSPDAGRVRVAEQWADRLGGAPLAFIHKTRDPTVPNQVVANRVVGDVEGRTCVLVDDMIDTGGTIAGAVRALKEA 227 (304)
T ss_pred CCcEEEEecCchHHHHHHHHHHcCCCCEEEEEEEcccCCCCceEEEecCcCCCCCEEEEEccccCcHHHHHHHHHHHHhc
Confidence 46788999999999999999999878999999999765433344778899999999999999999999999999999999
Q ss_pred CCCCCcEEEEEE--EeCHHHHHHHHHh
Q 035513 391 GVPESNIIFLNL--IAAPQGIHAICKR 415 (473)
Q Consensus 391 g~~~~~i~~~~~--~~~~~g~~~~~~~ 415 (473)
|+ ++|++++. +.++.+++++.++
T Consensus 228 Ga--~~I~~~~tH~v~~~~a~~~l~~~ 252 (304)
T PRK03092 228 GA--KDVIIAATHGVLSGPAAERLKNC 252 (304)
T ss_pred CC--CeEEEEEEcccCChHHHHHHHHC
Confidence 99 68888885 8889999999876
No 85
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=99.11 E-value=1.6e-10 Score=108.39 Aligned_cols=185 Identities=18% Similarity=0.283 Sum_probs=97.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhh-------------ccC--ccCCCCc-----c
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQN-------------LHD--YNFDHPD-----A 91 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~-------------~~~--~~f~~~~-----~ 91 (473)
+++|+|.|++||||||+++.|+++++ +.+++.|++|+.+....... ... +.|.... .
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~---~~~~~~g~~~r~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLG---YAYLDSGAMYRAIALAALQNRVDLTSEDALAELISHLDIRFIPTNGEVEVF 78 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhC---CceeeCchHHHHHHHHHHHcCCCCCCHHHHHHHHHhCCCEEecCCCceeEE
Confidence 36899999999999999999999997 88999999886543211100 000 1110000 0
Q ss_pred ccHHHHHHHHHHh----hcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHH
Q 035513 92 FDTELLLSDMEKL----KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLS 167 (473)
Q Consensus 92 ~d~~~l~~~l~~l----~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~ 167 (473)
++.+.+.+.+..- .......+|.+.......+ +......-+|+||-+.... +....+++||+++|.+++.+
T Consensus 79 l~~~~v~~~ir~~~v~~~~s~~a~~p~VR~~l~~~q---r~~a~~~~~Vi~Gr~~~~~--v~~~a~~~ifl~a~~~~Ra~ 153 (217)
T TIGR00017 79 LNGEDVSEAIRTQEVANAASKVAVFPKVREALLKRQ---QALAKNDGIIADGRDIGTV--VFPNAEVKIFLDASVEERAK 153 (217)
T ss_pred EcCcchHHHhcCHHHHHHHHHHcCCHHHHHHHHHHH---HHHhhcCCEEEEEcCcceE--EeCCCCEEEEEECCHHHHHH
Confidence 1111111111000 0000111232222222111 1122334588998763321 23336799999999999999
Q ss_pred Hhhhccccc-cCCChHHHHHHHHhhcccchhhhcCCcccc-ccEecccCC-Cchhhhhhh
Q 035513 168 RRIQRDTVE-RGRDIEDVLDQYARFVKPSFEEFILPSKKY-ADIIIPRGG-DNDVAIDLI 224 (473)
Q Consensus 168 R~~~R~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~-~~~~~i~~i 224 (473)
|+..|.... ...+.++....+..+..........|.... -+++|+++. +.++.++.+
T Consensus 154 Rr~~~~~~~g~~~~~e~~~~~i~~RD~~D~~R~~~~~~~a~~~i~Idts~l~ieevv~~I 213 (217)
T TIGR00017 154 RRYKQLQIKGNEVNFEELLAEIKERDDRDSNREVAPLKKADDALYLDTSNLSIDEVVEKI 213 (217)
T ss_pred HHHHHHhccCCCCCHHHHHHHHHHHHhcccccccCcccCCCCeEEEECCCCCHHHHHHHH
Confidence 998885432 133556777777666433333333332222 236677653 233444443
No 86
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=99.11 E-value=2.2e-10 Score=101.34 Aligned_cols=177 Identities=19% Similarity=0.262 Sum_probs=99.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
...+++.+|.|.|+|||||-|.|..++++++ +.++|++++.+..... +++-...++.+ .+++
T Consensus 3 ~~~~~~~IifVlGGPGsgKgTqC~kiv~ky~---ftHlSaGdLLR~E~~~------------~gse~g~~I~~---~i~~ 64 (195)
T KOG3079|consen 3 PKLDKPPIIFVLGGPGSGKGTQCEKIVEKYG---FTHLSAGDLLRAEIAS------------AGSERGALIKE---IIKN 64 (195)
T ss_pred CcccCCCEEEEEcCCCCCcchHHHHHHHHcC---ceeecHHHHHHHHHcc------------ccChHHHHHHH---HHHc
Confidence 3456788999999999999999999999998 9999999988432111 11111122222 2223
Q ss_pred CCceecccccccccccccccc-ccCCCcEEEEecccccCCh--hhh----hccCeEEEEecChhHHHHHhhhccccc-cC
Q 035513 107 GQAVSIPDYDFKSHKRKQQSR-LINPSDVFILEGILVLHDP--RVR----DLMSMKIFVDTDSDVRLSRRIQRDTVE-RG 178 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~~~-~~~~~~viIlEG~~~l~~~--~~~----~~~Dl~I~L~~~~e~~~~R~~~R~~~~-~~ 178 (473)
|.-+..... -..+..+. ...+...+++||..--.++ .+. ...++++|++|+.+++++|+++|+..+ |.
T Consensus 65 G~iVP~ei~----~~LL~~am~~~~~~~~fLIDGyPR~~~q~~~fe~~i~~~~~fvl~fdc~ee~~l~Rll~R~q~~~R~ 140 (195)
T KOG3079|consen 65 GDLVPVEIT----LSLLEEAMRSSGDSNGFLIDGYPRNVDQLVEFERKIQGDPDFVLFFDCPEETMLKRLLHRGQSNSRS 140 (195)
T ss_pred CCcCcHHHH----HHHHHHHHHhcCCCCeEEecCCCCChHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHhhcccCCCC
Confidence 332221111 11111111 1122334899987654333 122 245799999999999999999997542 32
Q ss_pred -CChHHHH---HHHHhhcccchhhhcCCcccc-ccEecccCCCchhhhhhhhheee
Q 035513 179 -RDIEDVL---DQYARFVKPSFEEFILPSKKY-ADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 179 -~~~~~~~---~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+.+.+. +.|.+.-.|..+.| .+. --..|+.+.+.+..+.++++.|.
T Consensus 141 DDn~esikkR~et~~~~t~Pvi~~~----e~kg~l~~i~a~~~~d~Vf~~v~~~id 192 (195)
T KOG3079|consen 141 DDNEESIKKRLETYNKSTLPVIEYY----EKKGKLLKINAERSVDDVFEEVVTAID 192 (195)
T ss_pred CCchHHHHHHHHHHHHcchHHHHHH----HccCcEEEecCCCCHHHHHHHHHHHhh
Confidence 2333333 33444434433332 221 12255555556666666666554
No 87
>PRK14527 adenylate kinase; Provisional
Probab=99.09 E-value=1.8e-10 Score=106.17 Aligned_cols=41 Identities=15% Similarity=0.189 Sum_probs=36.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+..++.+|+|.|++||||||+|+.|++.++ +.+++.|++++
T Consensus 2 ~~~~~~~i~i~G~pGsGKsT~a~~La~~~~---~~~is~gd~~r 42 (191)
T PRK14527 2 TQTKNKVVIFLGPPGAGKGTQAERLAQELG---LKKLSTGDILR 42 (191)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHhC---CCCCCccHHHH
Confidence 445678999999999999999999999987 88898888774
No 88
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=99.08 E-value=3.5e-10 Score=124.36 Aligned_cols=188 Identities=15% Similarity=0.190 Sum_probs=113.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
.+|+|.|++||||||+|+.|+++++ +.+++++.+|+.......... ..+.. ...|.+.+.+.+..+..+..+.+
T Consensus 2 ~~i~I~G~~GsGKST~ak~la~~l~---~~~~~~g~~~r~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 75 (712)
T PRK09518 2 IIVAIDGPAGVGKSSVSRALAQYLG---YAYLDTGAMYRACAWWCLKQG--IDLDA-ELVDEQVVTEAVGEFFTGLHFDI 75 (712)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEeecCcEeHHHHHHHHhcC--CCcch-hhhhhhhhHHHHHHHHhCCcEEE
Confidence 4799999999999999999999998 999999999976543211110 00000 01122233333333322111110
Q ss_pred -----------------------------------ccccccccccccccccc--CC--------CcEEEEecccccCChh
Q 035513 113 -----------------------------------PDYDFKSHKRKQQSRLI--NP--------SDVFILEGILVLHDPR 147 (473)
Q Consensus 113 -----------------------------------p~~~~~~~~~~~~~~~~--~~--------~~viIlEG~~~l~~~~ 147 (473)
|.+..... ..++.. .. ..-+|+||--... .
T Consensus 76 ~~~~~~~~i~~~~~~v~~~i~~~~v~~~~s~ia~~~~vr~~l~---~~qr~~~~~~~~~~~~~~~~~~v~eGRdigt--v 150 (712)
T PRK09518 76 SVDPDSPGVFADGEDISEEIRSPEVSSHVSAVAAIPPVRNVLI---AAQRAYIAREASADSFSGGLGIVAEGRDITT--V 150 (712)
T ss_pred ecCCCCcEEEECCeEchHhhCcHHHHHHHHHHhCCHHHHHHHH---HHHHHHHhhcCccccccccCcEEEecCccce--E
Confidence 11100000 111111 11 1258999844322 1
Q ss_pred hhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCcccccc-EecccC-CCchhhhhhhh
Q 035513 148 VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRG-GDNDVAIDLIV 225 (473)
Q Consensus 148 ~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~-~~~~~~i~~i~ 225 (473)
+....|++|||+|+.++|.+|+..+... .+.+++.++...+...+. ..+.|.....| ++|+++ .+.++.++.+.
T Consensus 151 v~p~a~~K~~l~A~~~~Ra~Rr~~~~~~---~~~~~~~~~~~~Rd~~d~-R~~~pl~~~~da~~idts~~~~~~v~~~i~ 226 (712)
T PRK09518 151 VAPDAEVRILLTAREEVRQARRSGQDRS---ETPGVVLEDVAARDEADS-KVTSFLSAADGVTTLDNSDLDFDETLDLLI 226 (712)
T ss_pred EecCCCeEEEEECCHHHHHHHHHHhhhc---CCHHHHHHHHHHHhhhcc-cccCCCCCCCCeEEEECCCCCHHHHHHHHH
Confidence 2233579999999999999999988542 677888888888887777 77777544333 677766 45567777777
Q ss_pred heeeeccccc
Q 035513 226 QHILTKLGQH 235 (473)
Q Consensus 226 ~~I~~~l~~~ 235 (473)
+.++..+...
T Consensus 227 ~~i~~~~~~~ 236 (712)
T PRK09518 227 GLVEDAIEEQ 236 (712)
T ss_pred HHHHhhhhhh
Confidence 7777666543
No 89
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=99.07 E-value=8.1e-10 Score=97.12 Aligned_cols=161 Identities=18% Similarity=0.306 Sum_probs=88.5
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~ 103 (473)
.+...++.+|+++|.|||||||+|++|.++|...| +.+++.|.+-+.+. ....|...+..+.-+-...+++
T Consensus 17 ~~~~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~-------~dLgFs~edR~eniRRvaevAk 89 (197)
T COG0529 17 ALKGQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLN-------RDLGFSREDRIENIRRVAEVAK 89 (197)
T ss_pred HHhCCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhccc-------CCCCCChHHHHHHHHHHHHHHH
Confidence 44667789999999999999999999999986544 67778887664332 2344554333221111111111
Q ss_pred hhcCCceeccccccccccccccccccCCCcEEEEecccccCCh---hhhhccC----eEEEEecChhHHHHHhhhccccc
Q 035513 104 LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---RVRDLMS----MKIFVDTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 104 l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---~~~~~~D----l~I~L~~~~e~~~~R~~~R~~~~ 176 (473)
+ +....++++-....-+.. ..++.+. +-||++||.++|.+|-
T Consensus 90 l------------------------l~daG~iviva~ISP~r~~R~~aR~~~~~~~FiEVyV~~pl~vce~RD------- 138 (197)
T COG0529 90 L------------------------LADAGLIVIVAFISPYREDRQMARELLGEGEFIEVYVDTPLEVCERRD------- 138 (197)
T ss_pred H------------------------HHHCCeEEEEEeeCccHHHHHHHHHHhCcCceEEEEeCCCHHHHHhcC-------
Confidence 1 122334443322211111 1222221 6899999999997773
Q ss_pred cCCChHHHHHHHHhhcccchhhhcCCc--cccccEecccCC-Cchhhhhhhhhee
Q 035513 177 RGRDIEDVLDQYARFVKPSFEEFILPS--KKYADIIIPRGG-DNDVAIDLIVQHI 228 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~ad~vI~~~~-~~~~~i~~i~~~I 228 (473)
+..+..+-..-..+.|--.-.|| ...++++++.+. +.++.++.+++.+
T Consensus 139 ----pKGLYkKAr~GeI~~fTGid~pYE~P~~Pel~l~t~~~~vee~v~~i~~~l 189 (197)
T COG0529 139 ----PKGLYKKARAGEIKNFTGIDSPYEAPENPELHLDTDRNSVEECVEQILDLL 189 (197)
T ss_pred ----chHHHHHHHcCCCCCCcCCCCCCCCCCCCeeEeccccCCHHHHHHHHHHHH
Confidence 23333333333333333333333 356899998652 3345555555444
No 90
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=99.07 E-value=5.4e-10 Score=101.09 Aligned_cols=156 Identities=15% Similarity=0.176 Sum_probs=82.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
.|.|+|++||||||+|+.|++.++ +.+++.|.+..........++ + ..+.++.+.+.-..+..
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg---~~~~d~D~~~~~~~g~~~~~~----~---~~~g~~~~~~~e~~~~~------- 66 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALG---YRFVDTDQWLQSTSNMTVAEI----V---EREGWAGFRARESAALE------- 66 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEEccHHHHHHhCCCHHHH----H---HHHCHHHHHHHHHHHHH-------
Confidence 588899999999999999999997 889999987633221111110 0 01111112111111100
Q ss_pred ccccccccccccccccCCCcEEEEecccccCCh---hhhhccCeEEEEecChhHHHHHhhhcccc-cc----CCC-hHHH
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---RVRDLMSMKIFVDTDSDVRLSRRIQRDTV-ER----GRD-IEDV 184 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~-~~----~~~-~~~~ 184 (473)
.......++.-|....... .+....+++|||++|++++.+|+..|... .+ +.. .+..
T Consensus 67 --------------~~~~~~~vi~~ggg~vl~~~~~~~l~~~~~~v~l~~~~~~~~~Rl~~r~~~~~rp~~~~~~~~~~~ 132 (171)
T PRK03731 67 --------------AVTAPSTVIATGGGIILTEENRHFMRNNGIVIYLCAPVSVLANRLEANPEEDQRPTLTGKPISEEV 132 (171)
T ss_pred --------------HhcCCCeEEECCCCccCCHHHHHHHHhCCEEEEEECCHHHHHHHHccccccccCCcCCCCChHHHH
Confidence 0011233343332222222 22334678999999999999999876321 11 122 2333
Q ss_pred HHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhee
Q 035513 185 LDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I 228 (473)
.+.+.+ ..+.| ...++++|+.+...++..+.+.+.+
T Consensus 133 ~~~~~~-r~~~y-------~~~a~~~Id~~~~~e~v~~~i~~~l 168 (171)
T PRK03731 133 AEVLAE-REALY-------REVAHHIIDATQPPSQVVSEILSAL 168 (171)
T ss_pred HHHHHH-HHHHH-------HHhCCEEEcCCCCHHHHHHHHHHHH
Confidence 333333 23333 3457799986644445555555444
No 91
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=99.07 E-value=2.9e-10 Score=123.86 Aligned_cols=182 Identities=17% Similarity=0.196 Sum_probs=110.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc---CC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH---GQ 108 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~---g~ 108 (473)
.++|.|.||+||||||+++.|+++++ +.++++|.+|+.+...-.+.. ..+ .|.+.+.+.+..+.- ..
T Consensus 442 ~~~i~i~g~~~~gks~~~~~l~~~~~---~~~~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~~~~~~~~~~~ 511 (661)
T PRK11860 442 VPVICIDGPTASGKGTVAARVAEALG---YHYLDSGALYRLTALAALRAG--VAL-----DDEAAIAALARGLPVRFEGD 511 (661)
T ss_pred cceEEeeCCCCCCHHHHHHHHHHHhC---CeEecHHHhhhHHHHHHHHcC--cCC-----CCHHHHHHHHhcCCeeecCC
Confidence 56899999999999999999999998 999999999976543322211 111 122222222222110 00
Q ss_pred cee------------------------ccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhH
Q 035513 109 AVS------------------------IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDV 164 (473)
Q Consensus 109 ~i~------------------------~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~ 164 (473)
.+. +|.++... ...++......-+|+||--... .+....|++|||++++++
T Consensus 512 ~~~~~~~~~~~~i~~~~v~~~~s~~a~~~~vr~~l---~~~qr~~~~~~~~v~eGRdigt--vv~p~a~~kifl~a~~~~ 586 (661)
T PRK11860 512 RIWLGGEDVTDAIRTEAAGMGASRVSALPAVRAAL---LALQRSFRRLPGLVADGRDMGT--VIFPDAALKVFLTASAEA 586 (661)
T ss_pred eEEECCeEchhhhCcHHHHHHHHHHhCCHHHHHHH---HHHHHHHhhCCCEEEECCCCcc--EECCCCCeEEEEECChhH
Confidence 010 11111111 1112222233358999843321 122335799999999999
Q ss_pred HHHHhhhcccccc--CCChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhheee
Q 035513 165 RLSRRIQRDTVER--GRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHIL 229 (473)
Q Consensus 165 ~~~R~~~R~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I~ 229 (473)
|.+|+.+... .+ ..+.+++.++..++...+....+.|.....| ++||++. +.++.++.+++.|+
T Consensus 587 Ra~Rr~~~~~-~~~~~~~~~~~~~~~~~Rd~~d~~R~~~pl~~~~da~~idts~~~~~~v~~~i~~~i~ 654 (661)
T PRK11860 587 RAERRYKQLI-SKGISANIADLLADLEARDARDTQRSVAPLKPAQDALLLDNSDLTIEQAVAQVLDWWQ 654 (661)
T ss_pred HHHHHHHHHH-hCCCCCCHHHHHHHHHHHhHHhhcCCCCCCccCCCEEEEECCCCCHHHHHHHHHHHHH
Confidence 9999987422 22 3367888888888888777778888666544 6666663 45566666666664
No 92
>PRK14531 adenylate kinase; Provisional
Probab=99.07 E-value=3.8e-10 Score=103.33 Aligned_cols=164 Identities=13% Similarity=0.155 Sum_probs=85.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH-hhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK-LKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~-l~~g~~i~ 111 (473)
..|.|.|+|||||||+|+.|++.++ +.+++++++++..... . . .+.+.+.. +..|..+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g---~~~is~gd~lr~~~~~----~---------~----~~~~~~~~~~~~G~~v~ 62 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHG---LRHLSTGDLLRSEVAA----G---------S----ALGQEAEAVMNRGELVS 62 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeEecccHHHHHHhc----C---------C----HHHHHHHHHHHcCCCCC
Confidence 3689999999999999999999997 9999998887431100 0 0 00011111 11111110
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCChh--h-------hhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--V-------RDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~--~-------~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
-..........+. ......+|+||.+.-..+. + ...++.++++++|.+++.+|+..|... .+..+
T Consensus 63 d~l~~~~~~~~l~----~~~~~g~ilDGfpr~~~q~~~~~~~~~~~~~~~~~vi~l~~~~~~l~~Rl~~R~r~--dD~~e 136 (183)
T PRK14531 63 DALVLAIVESQLK----ALNSGGWLLDGFPRTVAQAEALEPLLEELKQPIEAVVLLELDDAVLIERLLARGRA--DDNEA 136 (183)
T ss_pred HHHHHHHHHHHHh----hccCCcEEEeCCCCCHHHHHHHHHHHHHcCCCCCeEEEEECCHHHHHHHhhcCCCC--CCCHH
Confidence 0000000000000 0012346779876433221 1 124578999999999999999988431 12222
Q ss_pred ---HHHHHHHhhcccchhhhcCCcccc-ccEecccCCCchhhhhhhhh
Q 035513 183 ---DVLDQYARFVKPSFEEFILPSKKY-ADIIIPRGGDNDVAIDLIVQ 226 (473)
Q Consensus 183 ---~~~~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~~~~~~i~~i~~ 226 (473)
..++.|.....|..+.| ... --..|+++.+.++....+.+
T Consensus 137 ~i~~Rl~~y~~~~~pv~~~y----~~~~~~~~id~~~~~~~v~~~i~~ 180 (183)
T PRK14531 137 VIRNRLEVYREKTAPLIDHY----RQRGLLQSVEAQGSIEAITERIEK 180 (183)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECCCCHHHHHHHHHH
Confidence 23444555444444333 222 22455555454444444443
No 93
>PRK14532 adenylate kinase; Provisional
Probab=99.04 E-value=8.8e-10 Score=101.33 Aligned_cols=115 Identities=15% Similarity=0.219 Sum_probs=66.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HH-hhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KL-QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~-~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
.|.|.|+|||||||+|+.|++.++ +.+++.|++.+..... .. .....+ +..-+....+.+.+.+....
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g---~~~is~~d~lr~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~----- 72 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERG---MVQLSTGDMLRAAIASGSELGQRVKGI-MDRGELVSDEIVIALIEERL----- 72 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC---CeEEeCcHHHHHHHHcCCHHHHHHHHH-HHCCCccCHHHHHHHHHHHH-----
Confidence 488999999999999999999987 9999999887542100 00 000000 00001111111112111111
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChh--h-------hhccCeEEEEecChhHHHHHhhhcc
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--V-------RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~--~-------~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
........+|+||.+.-..+. + ...+|++||+++|.++..+|+..|.
T Consensus 73 ----------------~~~~~~~g~vldg~pr~~~q~~~~~~~l~~~g~~pd~vi~L~v~~~~~~~Rl~~R~ 128 (188)
T PRK14532 73 ----------------PEAEAAGGAIFDGFPRTVAQAEALDKMLASRGQKIDVVIRLKVDDEALIERIVKRF 128 (188)
T ss_pred ----------------hCcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCc
Confidence 011224567889865422211 1 1245789999999999999999884
No 94
>PRK14530 adenylate kinase; Provisional
Probab=99.03 E-value=7.6e-10 Score=104.04 Aligned_cols=119 Identities=13% Similarity=0.204 Sum_probs=66.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
.|+|.|++||||||+|+.|+++++ +.+++.|++++........+.. . .+....+ .+..|..+.-.
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~---~~~i~~g~~lr~~~~~~~~~~~--------~-~~~~~~~---~~~~g~~~~d~ 69 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFG---VEHVTTGDALRANKQMDISDMD--------T-EYDTPGE---YMDAGELVPDA 69 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeccHHHHHhccCCccccc--------c-hHHHHHH---HHHcCCCCCHH
Confidence 689999999999999999999997 9999999887432100000000 0 0000000 11111111000
Q ss_pred ccccccccccccccccCCCcEEEEecccccCCh-h-h--hhccCeEEEEecChhHHHHHhhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-V--RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~--~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
. ....+... +...+.+|+||...-.++ . + ....|++|||++|.+++++|+..|.
T Consensus 70 ~----~~~~l~~~--l~~~~~~IldG~pr~~~q~~~l~~~~~~d~vI~Ld~~~~~l~~Rl~~R~ 127 (215)
T PRK14530 70 V----VNEIVEEA--LSDADGFVLDGYPRNLEQAEYLESITDLDVVLYLDVSEEELVDRLTGRR 127 (215)
T ss_pred H----HHHHHHHH--HhcCCCEEEcCCCCCHHHHHHHHHhcCCCEEEEEeCCHHHHHHHHhCCC
Confidence 0 00000000 112345788985432211 1 1 1236899999999999999998874
No 95
>PRK14737 gmk guanylate kinase; Provisional
Probab=99.03 E-value=7.5e-10 Score=101.41 Aligned_cols=173 Identities=14% Similarity=0.125 Sum_probs=93.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHH---hhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL---QNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~---~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
.++++|.|+||||||||||++.|.+.++. + +.+.. + .+...+ .+..+|.|-+.+ ++...+..
T Consensus 2 ~~~~~ivl~GpsG~GK~tl~~~l~~~~~~--~-~~~v~--~--TTR~~r~gE~~G~dY~fvs~~--------~F~~~i~~ 66 (186)
T PRK14737 2 ASPKLFIISSVAGGGKSTIIQALLEEHPD--F-LFSIS--C--TTRAPRPGDEEGKTYFFLTIE--------EFKKGIAD 66 (186)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhcCCc--c-ccccC--c--cCCCCCCCCCCCceeEeCCHH--------HHHHHHHc
Confidence 35789999999999999999999887642 1 11110 0 111111 112234454322 22344555
Q ss_pred CCceecccccccccccccc--ccccCCCcEEEEecccccCChhhhhcc-C--eEEEEecC-hhHHHHHhhhccccccCCC
Q 035513 107 GQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRDLM-S--MKIFVDTD-SDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~~~-D--l~I~L~~~-~e~~~~R~~~R~~~~~~~~ 180 (473)
++.+.+..|....+..... ...+....++|+|.-.... ..+...+ + +.||+.+| .+++.+|+.+|+.. +
T Consensus 67 ~~f~e~~~~~g~~YGt~~~~i~~~~~~g~~~i~d~~~~g~-~~l~~~~~~~~~~Ifi~pps~e~l~~RL~~R~~~----s 141 (186)
T PRK14737 67 GEFLEWAEVHDNYYGTPKAFIEDAFKEGRSAIMDIDVQGA-KIIKEKFPERIVTIFIEPPSEEEWEERLIHRGTD----S 141 (186)
T ss_pred CCeEEEEEECCeeecCcHHHHHHHHHcCCeEEEEcCHHHH-HHHHHhCCCCeEEEEEECCCHHHHHHHHHhcCCC----C
Confidence 6666655554333322211 1123456677777322221 1233333 3 68999885 68888888888532 3
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+.+...+.... +.. .+...+|++|.|+ +.+.+..++.+.|.
T Consensus 142 ~e~i~~Rl~~~~-~e~-----~~~~~~D~vI~N~-dle~a~~ql~~ii~ 183 (186)
T PRK14737 142 EESIEKRIENGI-IEL-----DEANEFDYKIIND-DLEDAIADLEAIIC 183 (186)
T ss_pred HHHHHHHHHHHH-HHH-----hhhccCCEEEECc-CHHHHHHHHHHHHh
Confidence 333333332221 111 1256799999988 77777766665554
No 96
>PTZ00088 adenylate kinase 1; Provisional
Probab=99.02 E-value=1.9e-09 Score=101.77 Aligned_cols=123 Identities=14% Similarity=0.153 Sum_probs=70.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHh-hcCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKL-KHGQ 108 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l-~~g~ 108 (473)
+.|+.|+|.|+|||||||+|+.|++.++ +.++++|++++...... .. +.+.+..+ .+|.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g---~~~is~gdllr~~~~~~-t~----------------lg~~i~~~~~~G~ 63 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKEN---LKHINMGNILREEIKAK-TT----------------IGKEIQKVVTSGN 63 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC---CcEEECChHHHHHhhcC-Ch----------------HHHHHHHHHHcCC
Confidence 4556799999999999999999999998 99999999985321110 00 00111111 1121
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCCh-hh---hhccCeEEEEecChhHHHHHhhhcc
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-RV---RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~~---~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
.+.-..+..-...++... .......+++||..--..+ .. ....|++++++++.+++++|+..|.
T Consensus 64 lvpd~iv~~lv~~~l~~~-~~~~~~g~iLDGfPRt~~Qa~~l~~~~~~~~vi~l~~~~~~~~~Rl~~Rr 131 (229)
T PTZ00088 64 LVPDNLVIAIVKDEIAKV-TDDCFKGFILDGFPRNLKQCKELGKITNIDLFVNIYLPRNILIKKLLGRR 131 (229)
T ss_pred cCCHHHHHHHHHHHHHhh-ccccCceEEEecCCCCHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHcCc
Confidence 111000000000001000 0123456899996532222 11 1346789999999999999999884
No 97
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=99.01 E-value=1e-09 Score=97.25 Aligned_cols=138 Identities=18% Similarity=0.206 Sum_probs=76.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHH----HHHHhhcCCce
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLS----DMEKLKHGQAV 110 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~----~l~~l~~g~~i 110 (473)
|.|+|++||||||+|+.|++.++ +.+++.|.+.+.......... |. .+..+.+.+ .+..+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~---~~~~~~d~~~~~~~~~~~~~~----~~---~~~~~~~~~~e~~~~~~~~----- 66 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALG---LPFVDLDELIEQRAGMSIPEI----FA---EEGEEGFRELEREVLLLLL----- 66 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHcCCCHHHH----HH---HHCHHHHHHHHHHHHHHHh-----
Confidence 78999999999999999999987 889999988643321111000 00 011111111 111111
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChh---hhhccCeEEEEecChhHHHHHhhhccccccCCC--hHHHH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR---VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD--IEDVL 185 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~---~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~--~~~~~ 185 (473)
.....++..|.....+.. ......++|||++|.+++.+|+..|........ .+...
T Consensus 67 -------------------~~~~~vi~~g~~~i~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~r~~r~~~~~~~~~~~~ 127 (154)
T cd00464 67 -------------------TKENAVIATGGGAVLREENRRLLLENGIVVWLDASPEELLERLARDKTRPLLQDEDPERLR 127 (154)
T ss_pred -------------------ccCCcEEECCCCccCcHHHHHHHHcCCeEEEEeCCHHHHHHHhccCCCCCCCCCCCHHHHH
Confidence 122334433432222331 122345899999999999999988752222211 12233
Q ss_pred HHHHhhcccchhhhcCCccccccEecccC
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRG 214 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~ 214 (473)
..|.++ .+.| .+.||++++.+
T Consensus 128 ~~~~~r-~~~Y-------~~~ad~~i~~~ 148 (154)
T cd00464 128 ELLEER-EPLY-------REVADLTIDTD 148 (154)
T ss_pred HHHHHH-HHHH-------HHhCcEEEECC
Confidence 333332 2233 56699999765
No 98
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=99.01 E-value=4.7e-09 Score=94.09 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=30.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
|+|.|++||||||+|+.|++.++ ..+++.|+++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~---~~~v~~D~~~~ 34 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLG---AKFIEGDDLHP 34 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcC---CeEEeCccccC
Confidence 57899999999999999999987 78899999873
No 99
>PRK13808 adenylate kinase; Provisional
Probab=99.00 E-value=1e-09 Score=108.22 Aligned_cols=171 Identities=12% Similarity=0.099 Sum_probs=89.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccC---ccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHD---YNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~---~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
.|+|.|+|||||||+|+.|++.|+ +.+++.|++++...... ...+. ......+....+.+...+.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~yg---l~~is~gdlLR~~i~~~-s~~g~~~~~~~~~G~lVPdeiv~~li~e------- 70 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYG---IVQLSTGDMLRAAVAAG-TPVGLKAKDIMASGGLVPDEVVVGIISD------- 70 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CceecccHHHHHHhhcC-ChhhHHHHHHHHcCCCCCHHHHHHHHHH-------
Confidence 488899999999999999999997 89999998874311000 00000 00000001111111111111
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCCh-h-h---h----hccCeEEEEecChhHHHHHhhhccc-------
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-V---R----DLMSMKIFVDTDSDVRLSRRIQRDT------- 174 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~---~----~~~Dl~I~L~~~~e~~~~R~~~R~~------- 174 (473)
++.. .....-+|+||.+--.++ . + . -..|++|||++|++++++|+..|..
T Consensus 71 -----------~l~~---~~~~~G~ILDGFPRt~~QA~~L~~ll~~~gi~PDlVI~LDVp~evll~Rl~~R~~~~~~rg~ 136 (333)
T PRK13808 71 -----------RIEQ---PDAANGFILDGFPRTVPQAEALDALLKDKQLKLDAVVELRVNEGALLARVETRVAEMRARGE 136 (333)
T ss_pred -----------HHhc---ccccCCEEEeCCCCCHHHHHHHHHHHHhcCCCcCeEEEEECCHHHHHHHHHcCcccccccCC
Confidence 1110 111345899986543222 1 1 1 1478999999999999999988721
Q ss_pred cccCC-ChHHHH---HHHHhhcccchhhhcCCcccc-ccEecccCCCchhhhhhhhheeeeccc
Q 035513 175 VERGR-DIEDVL---DQYARFVKPSFEEFILPSKKY-ADIIIPRGGDNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 175 ~~~~~-~~~~~~---~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~~~~~~i~~i~~~I~~~l~ 233 (473)
..+.+ ..+.+. ..|.....|..+.| ... --+.||.+.+.++..+++.+.|...+.
T Consensus 137 ~~R~DD~~E~i~kRL~~Y~~~t~PLl~~Y----~e~~~lv~IDa~~siEEV~eeI~~~L~~~~~ 196 (333)
T PRK13808 137 EVRADDTPEVLAKRLASYRAQTEPLVHYY----SEKRKLLTVDGMMTIDEVTREIGRVLAAVGA 196 (333)
T ss_pred ccCCCCCHHHHHHHHHHHHHHhHHHHHHh----hccCcEEEEECCCCHHHHHHHHHHHHHHHhC
Confidence 11222 222222 23443333333322 221 234555544556667777777765544
No 100
>PRK00279 adk adenylate kinase; Reviewed
Probab=99.00 E-value=1.5e-09 Score=102.01 Aligned_cols=35 Identities=14% Similarity=0.264 Sum_probs=32.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|+|.|++||||||+|+.|++.++ +.+++++++.+
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~---~~~is~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYG---IPHISTGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEECCccHH
Confidence 589999999999999999999998 99999988874
No 101
>PRK14528 adenylate kinase; Provisional
Probab=98.98 E-value=1.7e-09 Score=99.23 Aligned_cols=166 Identities=15% Similarity=0.190 Sum_probs=86.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
..|.|.|+|||||||+|+.|++.++ +.++++|+.++...... ...+ .+.-..+..|..+.-
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~---~~~is~~~~lr~~~~~~-~~~g---------------~~~~~~~~~g~lvp~ 62 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLS---IPQISTGDILREAVKNQ-TAMG---------------IEAKRYMDAGDLVPD 62 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC---CCeeeCCHHHHHHhhcC-CHHH---------------HHHHHHHhCCCccCH
Confidence 4689999999999999999999997 89999998874321110 0000 000011111111110
Q ss_pred cccccccccccccccccCCCcEEEEecccccCCh-h-hh-------hccCeEEEEecChhHHHHHhhhcccc-ccCC-Ch
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-VR-------DLMSMKIFVDTDSDVRLSRRIQRDTV-ERGR-DI 181 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~~-------~~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~~-~~ 181 (473)
.........++. .......+|+||.+.-.++ . +. ...|.+|++++|.+++.+|+..|... .+.. +.
T Consensus 63 ~~~~~~~~~~l~---~~~~~~g~viDG~Pr~~~qa~~l~~~~~~~~~~~d~vI~Ld~~~~~~~~Rl~~R~~~~gr~dd~~ 139 (186)
T PRK14528 63 SVVIGIIKDRIR---EADCKNGFLLDGFPRTVEQADALDALLKNEGKSIDKAINLEVPDGELLKRLLGRAEIEGRADDNE 139 (186)
T ss_pred HHHHHHHHHHHh---CcCccCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhcCccccCCCCCCH
Confidence 000000001111 0112346899986432211 1 11 24789999999999999999998532 1222 23
Q ss_pred HHH---HHHHHhhcccchhhhcCCcccc-ccEecccCCCchhhhhhh
Q 035513 182 EDV---LDQYARFVKPSFEEFILPSKKY-ADIIIPRGGDNDVAIDLI 224 (473)
Q Consensus 182 ~~~---~~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~~~~~~~i~~i 224 (473)
+.+ +..|.....|..+.| ... --+.|+.+++.++....+
T Consensus 140 e~i~~Rl~~y~~~~~pv~~~y----~~~~~~~~i~~~~~~~~v~~~~ 182 (186)
T PRK14528 140 ATIKNRLDNYNKKTLPLLDFY----AAQKKLSQVNGVGSLEEVTSLI 182 (186)
T ss_pred HHHHHHHHHHHHHhHHHHHHH----HhCCCEEEEECCCCHHHHHHHH
Confidence 332 334555555555544 322 234454444444444443
No 102
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.97 E-value=1.7e-09 Score=101.27 Aligned_cols=117 Identities=16% Similarity=0.174 Sum_probs=66.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH-hhcCCceecc
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK-LKHGQAVSIP 113 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~-l~~g~~i~~p 113 (473)
|.|.|++||||||+|+.|++.++ +.+++++++++...... .. +.+.+.. +..|..+.-.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g---~~~is~gdllr~~~~~~-~~----------------~~~~~~~~~~~g~~vp~~ 61 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYG---LPHISTGDLLRAEIKAG-TP----------------LGKKAKEYMEKGELVPDE 61 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CCeeehhHHHHHhhccc-cH----------------HHHHHHHHHhCCCCCCHH
Confidence 78999999999999999999987 99999988874321110 00 0011111 1112111100
Q ss_pred ccccccccccccccccCCCcEEEEecccccCCh--hhh---h-ccCeEEEEecChhHHHHHhhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RVR---D-LMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~~---~-~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
.+......++.. ......-+|+||.+.-..+ .+. . ..|++|++++|.+++.+|+..|.
T Consensus 62 ~~~~l~~~~i~~--~~~~~~~~ilDGfPrt~~Qa~~l~~~~~~~~~~vi~L~~~~~~~~~Rl~~R~ 125 (210)
T TIGR01351 62 IVNQLVKERLTQ--NQDNENGFILDGFPRTLSQAEALDALLKEKIDAVIELDVPDEELVERLSGRR 125 (210)
T ss_pred HHHHHHHHHHhc--CcccCCcEEEeCCCCCHHHHHHHHHHhccCCCEEEEEECCHHHHHHHHHCCC
Confidence 000000000100 0112456899996443221 111 2 46899999999999999999884
No 103
>PLN02199 shikimate kinase
Probab=98.96 E-value=1.3e-09 Score=105.02 Aligned_cols=163 Identities=15% Similarity=0.140 Sum_probs=92.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCC-CHHHHhhccCccCCCCc-cccHHHHHHHHHHhhcCCc
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSL-TDEKLQNLHDYNFDHPD-AFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~-~~~~~~~~~~~~f~~~~-~~d~~~l~~~l~~l~~g~~ 109 (473)
+..|.|+|.+||||||+++.|++.++ +.++++|.+++.. ......++ |...+ ..-.+.-.+.+..+..
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg---~~fIDtD~lIe~~~~G~sI~eI----f~~~GE~~FR~~E~e~L~~L~~--- 171 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLG---YTFFDCDTLIEQAMNGTSVAEI----FVHHGENFFRGKETDALKKLSS--- 171 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEehHHHHHHHhcCCCHHHH----HHHhCHHHHHHHHHHHHHHHHh---
Confidence 45799999999999999999999987 9999999877543 11111111 21111 1111222333443322
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCChhhhhc--cCeEEEEecChhHHHHHhhh-----ccccccCCChH
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDL--MSMKIFVDTDSDVRLSRRIQ-----RDTVERGRDIE 182 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~--~Dl~I~L~~~~e~~~~R~~~-----R~~~~~~~~~~ 182 (473)
....||--|......+..+.. ...+|||++|.+++.+|+.. |.... +.+.+
T Consensus 172 ---------------------~~~~VIStGGG~V~~~~n~~~L~~G~vV~Ldas~E~l~~RL~~~~~~~RPLL~-~~~~d 229 (303)
T PLN02199 172 ---------------------RYQVVVSTGGGAVIRPINWKYMHKGISIWLDVPLEALAHRIAAVGTDSRPLLH-DESGD 229 (303)
T ss_pred ---------------------cCCEEEECCCcccCCHHHHHHHhCCeEEEEECCHHHHHHHHhhcCCCCCCcCC-CCCcc
Confidence 123444444444444432221 25799999999999999874 22111 11111
Q ss_pred ------HHHHHHHhhcccchhhhcCCccccccEecc------------cC-CCchhhhhhhhheeeecccc
Q 035513 183 ------DVLDQYARFVKPSFEEFILPSKKYADIIIP------------RG-GDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 183 ------~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~------------~~-~~~~~~i~~i~~~I~~~l~~ 234 (473)
+.+.+.+....|.| .. ||++|+ .+ .+.++.+.++++.+...+..
T Consensus 230 ~~~~~~~~L~~L~~~R~plY-------~~-Ad~~V~~~~~~~~~~~~~td~~s~~ei~~eIl~~l~~~l~~ 292 (303)
T PLN02199 230 AYSVAFKRLSAIWDERGEAY-------TN-ANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQVLSFLEK 292 (303)
T ss_pred hhhhHHHHHHHHHHHHHHHH-------Hh-CCEEEecccccccccccccCCCCHHHHHHHHHHHHHHHHhh
Confidence 22333333334555 44 999987 22 23445667777777766654
No 104
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=98.95 E-value=1.9e-09 Score=106.82 Aligned_cols=169 Identities=16% Similarity=0.236 Sum_probs=91.3
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHh
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKL 104 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l 104 (473)
+...++...|+|+|++||||||+++.|++.++ +.+++.|..+.........++ |...+.-.+ +.-.+.+..+
T Consensus 127 ~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg---~~~id~D~~i~~~~G~~i~ei----~~~~G~~~fr~~e~~~l~~l 199 (309)
T PRK08154 127 GRRAARRRRIALIGLRGAGKSTLGRMLAARLG---VPFVELNREIEREAGLSVSEI----FALYGQEGYRRLERRALERL 199 (309)
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHHHHcC---CCEEeHHHHHHHHhCCCHHHH----HHHHCHHHHHHHHHHHHHHH
Confidence 34555667899999999999999999999997 888888865422111000000 000000000 1111122222
Q ss_pred hcCCceeccccccccccccccccccCCCcEEEEecccccCChhhh---hccCeEEEEecChhHHHHHhhhccccc---cC
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVR---DLMSMKIFVDTDSDVRLSRRIQRDTVE---RG 178 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~---~~~Dl~I~L~~~~e~~~~R~~~R~~~~---~~ 178 (473)
.. ....+||-.|......+... ....++|||++|.+++.+|+.+|.... ..
T Consensus 200 l~-----------------------~~~~~VI~~Ggg~v~~~~~~~~l~~~~~~V~L~a~~e~~~~Rl~~r~~~rp~~~~ 256 (309)
T PRK08154 200 IA-----------------------EHEEMVLATGGGIVSEPATFDLLLSHCYTVWLKASPEEHMARVRAQGDLRPMADN 256 (309)
T ss_pred Hh-----------------------hCCCEEEECCCchhCCHHHHHHHHhCCEEEEEECCHHHHHHHHhcCCCCCCCCCC
Confidence 11 12234444444333332111 112379999999999999998874321 11
Q ss_pred CC-hHHHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeeeccc
Q 035513 179 RD-IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 179 ~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~~l~ 233 (473)
.. .+.+...+..+ .+.| +.+|++|+++. +.++..+.+.+.+...+.
T Consensus 257 ~~~~e~i~~~~~~R-~~~y--------~~ad~~I~t~~~s~ee~~~~I~~~l~~~~~ 304 (309)
T PRK08154 257 REAMEDLRRILASR-EPLY--------ARADAVVDTSGLTVAQSLARLRELVRPALG 304 (309)
T ss_pred CChHHHHHHHHHHH-HHHH--------HhCCEEEECCCCCHHHHHHHHHHHHHHHhc
Confidence 22 23333333333 3444 34899999774 445666666666654443
No 105
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=98.94 E-value=2.1e-09 Score=94.45 Aligned_cols=149 Identities=17% Similarity=0.195 Sum_probs=89.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCC-----CccccHHHHHHHHHHhhcC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDH-----PDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~-----~~~~d~~~l~~~l~~l~~g 107 (473)
++|+|+|.||+||||+|+.|+ .++ +.++++.+|.+... ..++. .-..|.+.+.+.+..+..
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg---~~~i~l~el~~e~~---------~~~~~de~r~s~~vD~d~~~~~le~~~~- 66 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELG---YKVIELNELAKENG---------LYTEYDELRKSVIVDVDKLRKRLEELLR- 66 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhC---CceeeHHHHHHhcC---------CeeccCCccceEEeeHHHHHHHHHHHhc-
Confidence 369999999999999999999 776 78887766553211 11211 123566666666665421
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~ 187 (473)
....|+|+.+. .+...+|++|-|.++++...+|+..|+ .+.+.+.+.
T Consensus 67 ------------------------~~~~Ivd~H~~----hl~~~~dlVvVLR~~p~~L~~RLk~RG-----y~~eKI~EN 113 (180)
T COG1936 67 ------------------------EGSGIVDSHLS----HLLPDCDLVVVLRADPEVLYERLKGRG-----YSEEKILEN 113 (180)
T ss_pred ------------------------cCCeEeechhh----hcCCCCCEEEEEcCCHHHHHHHHHHcC-----CCHHHHHHH
Confidence 23456665443 233367999999999999999999884 344444443
Q ss_pred HHhhccc-chhhhcCCccccccEecccC-CCchhhhhhhhheeee
Q 035513 188 YARFVKP-SFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHILT 230 (473)
Q Consensus 188 ~~~~~~~-~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I~~ 230 (473)
.+..... -+.+-...+ .+.+.++.. .+.++.++.+.+.|..
T Consensus 114 veAEi~~vi~~EA~E~~--~~v~evdtt~~s~ee~~~~i~~ii~~ 156 (180)
T COG1936 114 VEAEILDVILIEAVERF--EAVIEVDTTNRSPEEVAEEIIDIIGG 156 (180)
T ss_pred HHHHHHHHHHHHHHHhc--CceEEEECCCCCHHHHHHHHHHHHcc
Confidence 2221110 011111111 345555543 3455666777776663
No 106
>PLN02674 adenylate kinase
Probab=98.92 E-value=3.2e-09 Score=100.69 Aligned_cols=122 Identities=16% Similarity=0.103 Sum_probs=70.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
+....|.|.|++||||||+|+.|+++++ +.+++++++++..-... ...+ .+.-.-+.+|+.
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~---~~his~GdllR~~i~~~-s~~g---------------~~i~~~~~~G~l 89 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYC---LCHLATGDMLRAAVAAK-TPLG---------------IKAKEAMDKGEL 89 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcC---CcEEchhHHHHHHHhcc-Chhh---------------HHHHHHHHcCCc
Confidence 3346789999999999999999999998 99999999885321100 0000 011111112222
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCCh-h-hh-------hccCeEEEEecChhHHHHHhhhcc
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-VR-------DLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~~-------~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
+.-.....-..+++.. ......+|+||..--..+ . +. ...|.+|++++|.++..+|+..|.
T Consensus 90 vpd~iv~~lv~~~l~~---~~~~~g~ilDGfPRt~~Qa~~l~~~l~~~~~~~d~vi~l~v~~~~l~~Rl~gR~ 159 (244)
T PLN02674 90 VSDDLVVGIIDEAMKK---PSCQKGFILDGFPRTVVQAQKLDEMLAKQGAKIDKVLNFAIDDAILEERITGRW 159 (244)
T ss_pred cCHHHHHHHHHHHHhC---cCcCCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHhccc
Confidence 2110000000011100 112356899986643222 1 11 246899999999999999999883
No 107
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.92 E-value=1.1e-08 Score=92.99 Aligned_cols=41 Identities=27% Similarity=0.436 Sum_probs=32.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSL 73 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~ 73 (473)
+.+|.++|+|||||||+|+.|++.++. .+..++.|+|+..+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~~~-~~~~~~~D~~~~~~ 42 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVLAE-PWLHFGVDSFIEAL 42 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhhCC-CccccCccHHHHhc
Confidence 358999999999999999999998752 24556788777544
No 108
>PRK00698 tmk thymidylate kinase; Validated
Probab=98.91 E-value=5.7e-09 Score=97.08 Aligned_cols=77 Identities=16% Similarity=0.161 Sum_probs=44.1
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
..|++||+++|++++.+|+.+|+.. ...+.....|.......|..+... .....++|+++.+.++..+++.+.|..
T Consensus 127 ~pd~~i~l~~~~~~~~~Rl~~R~~~---~~~~~~~~~~~~~~~~~y~~~~~~-~~~~~~~Id~~~~~e~v~~~i~~~i~~ 202 (205)
T PRK00698 127 RPDLTLYLDVPPEVGLARIRARGEL---DRIEQEGLDFFERVREGYLELAEK-EPERIVVIDASQSLEEVHEDILAVIKA 202 (205)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCc---chhhhhhHHHHHHHHHHHHHHHHh-CCCeEEEEeCCCCHHHHHHHHHHHHHH
Confidence 3689999999999999999998531 111111123333333344443221 122456777665555555666665544
Q ss_pred c
Q 035513 231 K 231 (473)
Q Consensus 231 ~ 231 (473)
.
T Consensus 203 ~ 203 (205)
T PRK00698 203 W 203 (205)
T ss_pred H
Confidence 3
No 109
>PLN02459 probable adenylate kinase
Probab=98.91 E-value=6.2e-09 Score=99.25 Aligned_cols=128 Identities=14% Similarity=0.097 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhh
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLK 105 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~ 105 (473)
+.+..+++.|.|.|+|||||||+|+.|++.++ +.+++++++++...... .. .-.+.-..+.
T Consensus 23 ~~~~~~~~~ii~~G~PGsGK~T~a~~la~~~~---~~~is~gdllR~ei~~~-t~---------------lg~~i~~~~~ 83 (261)
T PLN02459 23 SLAKGRNVNWVFLGCPGVGKGTYASRLSKLLG---VPHIATGDLVREEIKSS-GP---------------LGAQLKEIVN 83 (261)
T ss_pred CccccCccEEEEECCCCCCHHHHHHHHHHHhC---CcEEeCcHHHHHHHhcc-ch---------------hHHHHHHHHH
Confidence 33444556788899999999999999999997 99999999874321100 00 0011111122
Q ss_pred cCCceeccccccccccccccccccCCCcEEEEecccccCCh-h-hh--hccCeEEEEecChhHHHHHhhhcc
Q 035513 106 HGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-VR--DLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~~--~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
+|.-+.-.....-...++.... ......+|+||..--..+ . +. ...|.+|+++++.++..+|+..|.
T Consensus 84 ~G~lVPdeiv~~ll~~~l~~~~-~~~~~g~iLDGFPRt~~Qa~~Le~~~~id~Vi~L~v~d~~l~~Rl~gR~ 154 (261)
T PLN02459 84 QGKLVPDEIIFSLLSKRLEAGE-EEGESGFILDGFPRTVRQAEILEGVTDIDLVVNLKLREEVLVEKCLGRR 154 (261)
T ss_pred cCCccCHHHHHHHHHHHHhccc-ccCCceEEEeCCCCCHHHHHHHHhcCCCCEEEEEECCHHHHHHHhhccc
Confidence 2222211000000001110000 013467999996643322 1 11 235899999999999999999884
No 110
>PRK02496 adk adenylate kinase; Provisional
Probab=98.90 E-value=4.2e-09 Score=96.46 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=66.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccC---ccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHD---YNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~---~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
+.|+|.|++||||||+|+.|++.++ +.+++.|++.+...... ...+. ...........+...+.+...
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~---~~~i~~~~~~~~~~~~~-~~~g~~~~~~~~~g~~~~~~~~~~~l~~~----- 72 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLH---IPHISTGDILRQAIKEQ-TPLGIKAQGYMDKGELVPDQLVLDLVQER----- 72 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEEhHHHHHHHHhcc-ChhHHHHHHHHHCCCccCHHHHHHHHHHH-----
Confidence 5689999999999999999999987 88999987763321100 00000 000000001111111111111
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCCh-h-h-------hhccCeEEEEecChhHHHHHhhhcc
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-V-------RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~-------~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
+. .......+|+||...-..+ . + ....|++|++++|.+++.+|+..|.
T Consensus 73 -------------l~---~~~~~~g~vldGfPr~~~q~~~l~~~~~~~~~~~~~vi~l~~~~~~~~~Rl~~R~ 129 (184)
T PRK02496 73 -------------LQ---QPDAANGWILDGFPRKVTQAAFLDELLQEIGQSGERVVNLDVPDDVVVERLLARG 129 (184)
T ss_pred -------------Hh---CcCccCCEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHHHHHhcCC
Confidence 00 0112345899997542221 1 1 1245899999999999999999884
No 111
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.89 E-value=4.2e-09 Score=95.55 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=71.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH-hhcCCceec
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK-LKHGQAVSI 112 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~-l~~g~~i~~ 112 (473)
.|.|.|+|||||||+|+.|++.++ +.++|+|++++.-.... ..+.+.... +..++-+.-
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~---i~hlstgd~~r~~~~~~-----------------t~lg~~~k~~i~~g~lv~d 61 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLG---LPHLDTGDILRAAIAER-----------------TELGEEIKKYIDKGELVPD 61 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CcEEcHhHHhHhhhccC-----------------ChHHHHHHHHHHcCCccch
Confidence 588999999999999999999987 99999999885432111 011112222 222321211
Q ss_pred cccccccccccccccccCCCcEEEEecccccCCh-hh-----h---hccCeEEEEecChhHHHHHhhhccc
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-RV-----R---DLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~~-----~---~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
..++.....++... .....+|++|..-.... .. . ...|.++.++.+.++.+.|...|..
T Consensus 62 ~i~~~~v~~rl~~~---d~~~~~I~dg~PR~~~qa~~l~r~l~~~g~~~d~v~~~~~~~~~~~~r~~~r~~ 129 (178)
T COG0563 62 EIVNGLVKERLDEA---DCKAGFILDGFPRTLCQARALKRLLKELGVRLDMVIELDVPEELLLERLLGRRV 129 (178)
T ss_pred HHHHHHHHHHHHhh---cccCeEEEeCCCCcHHHHHHHHHHHHHcCCCcceEEeeeCCHHHHHHHHhCccc
Confidence 12222222222221 11226888886543221 11 1 2558999999999999999998853
No 112
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.89 E-value=2.5e-08 Score=88.05 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS 72 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~ 72 (473)
+|.|+|++||||||+|+.|++.++ +.+++.|.+.+.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~---~~~i~~D~~~~~ 36 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLG---APFIDGDDLHPP 36 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcC---CEEEeCcccccH
Confidence 478999999999999999999876 889999998754
No 113
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.89 E-value=2.5e-08 Score=85.30 Aligned_cols=150 Identities=18% Similarity=0.221 Sum_probs=85.1
Q ss_pred EcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccC-ccCCCCccccH-HHHHHHHHHhhcCCceecccc
Q 035513 38 AGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHD-YNFDHPDAFDT-ELLLSDMEKLKHGQAVSIPDY 115 (473)
Q Consensus 38 ~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~-~~f~~~~~~d~-~~l~~~l~~l~~g~~i~~p~~ 115 (473)
+|.+||||||++..|+++++ +.+++.|+|+ +..++.++.. ....+.+.+.| +.+.+.+..+..+
T Consensus 1 MGVsG~GKStvg~~lA~~lg---~~fidGDdlH---p~aNi~KM~~GiPL~DdDR~pWL~~l~~~~~~~~~~-------- 66 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLG---AKFIDGDDLH---PPANIEKMSAGIPLNDDDRWPWLEALGDAAASLAQK-------- 66 (161)
T ss_pred CCCCccCHHHHHHHHHHHcC---CceecccccC---CHHHHHHHhCCCCCCcchhhHHHHHHHHHHHHhhcC--------
Confidence 48999999999999999998 9999999998 3333333322 22333333332 3333333332221
Q ss_pred ccccccccccccccCCCcEEEEecccccCChh----hhhcc-C-eEEEEecChhHHHHHhhhccccccCCChHHHHHHHH
Q 035513 116 DFKSHKRKQQSRLINPSDVFILEGILVLHDPR----VRDLM-S-MKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYA 189 (473)
Q Consensus 116 ~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~----~~~~~-D-l~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~ 189 (473)
+...+|. +-++ ... ++... + ..|||+.+.++.++|+..|.. ......-+..||.
T Consensus 67 ---------------~~~~vi~--CSAL-Kr~YRD~LR~~~~~~~Fv~L~g~~~~i~~Rm~~R~g--HFM~~~ll~SQfa 126 (161)
T COG3265 67 ---------------NKHVVIA--CSAL-KRSYRDLLREANPGLRFVYLDGDFDLILERMKARKG--HFMPASLLDSQFA 126 (161)
T ss_pred ---------------CCceEEe--cHHH-HHHHHHHHhccCCCeEEEEecCCHHHHHHHHHhccc--CCCCHHHHHHHHH
Confidence 1112222 1111 122 22222 2 478999999999999999853 2334455566887
Q ss_pred hhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 190 ~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
....|.- ..--+.|+.+...++.++.+++.+.
T Consensus 127 ~LE~P~~--------de~vi~idi~~~~e~vv~~~~~~l~ 158 (161)
T COG3265 127 TLEEPGA--------DEDVLTIDIDQPPEEVVAQALAWLK 158 (161)
T ss_pred HhcCCCC--------CCCEEEeeCCCCHHHHHHHHHHHHh
Confidence 7655332 2223455555555555555554443
No 114
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=98.88 E-value=3.8e-08 Score=84.55 Aligned_cols=146 Identities=18% Similarity=0.196 Sum_probs=80.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhcc-CccCCCCccccH-HHHHH-HHHHhh
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLH-DYNFDHPDAFDT-ELLLS-DMEKLK 105 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~-~~~f~~~~~~d~-~~l~~-~l~~l~ 105 (473)
.+-+.+|.|.|.+||||||+++.|++.++ +.+++.|||+- ..+++++. .....+.+.|.| ..+.. ....+.
T Consensus 9 ~~~k~~i~vmGvsGsGKSTigk~L~~~l~---~~F~dgDd~Hp---~~NveKM~~GipLnD~DR~pWL~~i~~~~~~~l~ 82 (191)
T KOG3354|consen 9 GPFKYVIVVMGVSGSGKSTIGKALSEELG---LKFIDGDDLHP---PANVEKMTQGIPLNDDDRWPWLKKIAVELRKALA 82 (191)
T ss_pred CCCceeEEEEecCCCChhhHHHHHHHHhC---CcccccccCCC---HHHHHHHhcCCCCCcccccHHHHHHHHHHHHHhh
Confidence 34456899999999999999999999998 99999999983 33333332 233334444444 11211 112333
Q ss_pred cCCceeccc--cccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHH
Q 035513 106 HGQAVSIPD--YDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 106 ~g~~i~~p~--~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
.++.+.+.. ..+.-++.+.... . +|-..-+. ...=..|++.++.++...|+.+|.. .....+-
T Consensus 83 ~~q~vVlACSaLKk~YRdILr~sl--~-------~gk~~~~~----~~~l~fi~l~~s~evi~~Rl~~R~g--HFMp~~l 147 (191)
T KOG3354|consen 83 SGQGVVLACSALKKKYRDILRHSL--K-------DGKPGKCP----ESQLHFILLSASFEVILKRLKKRKG--HFMPADL 147 (191)
T ss_pred cCCeEEEEhHHHHHHHHHHHHhhc--c-------cCCccCCc----cceEEEeeeeccHHHHHHHHhhccc--ccCCHHH
Confidence 444433221 1111111111100 0 11111000 0001478999999999999999964 2334455
Q ss_pred HHHHHHhhcccc
Q 035513 184 VLDQYARFVKPS 195 (473)
Q Consensus 184 ~~~~~~~~~~~~ 195 (473)
...||.....|.
T Consensus 148 leSQf~~LE~p~ 159 (191)
T KOG3354|consen 148 LESQFATLEAPD 159 (191)
T ss_pred HHHHHHhccCCC
Confidence 566777665543
No 115
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=98.88 E-value=3.8e-09 Score=116.41 Aligned_cols=191 Identities=17% Similarity=0.203 Sum_probs=107.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCC-ccccHHHHH-----HHHHHhhc
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHP-DAFDTELLL-----SDMEKLKH 106 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~-~~~d~~~l~-----~~l~~l~~ 106 (473)
++|+|.|++||||||+|+.||++++ +.+++++.+||.++..-....-...-+.- +..|.+.+. ..+..+.-
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~---~~~~~~g~~yRa~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 111 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLG---AQCLNTGSFYRAFTLAALRRVSELAVQACSPSPDPDAAVGCAAVPHATNLDT 111 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHHHHHHHHHHcCCcccccccCCcCCHHHHhhhhhHHHHhhCce
Confidence 6899999999999999999999998 89999999998766543332110000000 001111111 11111110
Q ss_pred -------------------------------CCceeccccccccccc---------------------cccccccCCCcE
Q 035513 107 -------------------------------GQAVSIPDYDFKSHKR---------------------KQQSRLINPSDV 134 (473)
Q Consensus 107 -------------------------------g~~i~~p~~~~~~~~~---------------------~~~~~~~~~~~v 134 (473)
...+.+..-+-...-| +..++.+....-
T Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~dv~~~ir~~~v~~~vS~ia~~p~VR~~l~~~qr~~~~~~~ 191 (863)
T PRK12269 112 SYAPLTAQKKVALFDEAYWVSFARTVALSYRAGVMYVGEENVESLLRSDEVESAVSYFAAMPAIRAIMTGKIRSAVCGAR 191 (863)
T ss_pred EecccccccccccccccccccccccccccccCceEEECCeEchhhhcchHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCC
Confidence 0001000000000000 111222222335
Q ss_pred EEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccE-eccc
Q 035513 135 FILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADI-IIPR 213 (473)
Q Consensus 135 iIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~-vI~~ 213 (473)
+|+||--... -.....|++|||+|++++|.+|+..... . ..+.+++..+..++...+...-+.|.+...|- +||+
T Consensus 192 ~V~eGRDigT--vVfPdA~~KifL~As~e~RA~RR~~e~~-~-~~~~~~i~~~i~~RD~~D~~R~~~pL~~a~dAi~iDt 267 (863)
T PRK12269 192 VVCEGRDLTT--VVFVDADLKCYLDASIEARVARRWAQGT-S-RLSKQELEQRMRARDAHDRARTVGGLRCAPDALYVDT 267 (863)
T ss_pred EEEECCCCcc--EECCCCCEEEEEECCHHHHHHHHHHhhh-c-cCCHHHHHHHHHHhhhhhccCccCCCccCCCeEEEEC
Confidence 8888733221 1233447999999999999999876532 2 25677888888887776666677887776664 5555
Q ss_pred C-CCchhhhhhhhheeee
Q 035513 214 G-GDNDVAIDLIVQHILT 230 (473)
Q Consensus 214 ~-~~~~~~i~~i~~~I~~ 230 (473)
+ .+.++.++.+++.+..
T Consensus 268 s~l~ieevv~~i~~~~~~ 285 (863)
T PRK12269 268 SCLTIEEVCERIAREAHR 285 (863)
T ss_pred CCCCHHHHHHHHHHHHHh
Confidence 5 3455666666665554
No 116
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=98.88 E-value=1.3e-08 Score=93.89 Aligned_cols=34 Identities=26% Similarity=0.355 Sum_probs=27.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
++|+|.|++||||||+++.|++.+...+..++..
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~ 34 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE
Confidence 3799999999999999999999996544444433
No 117
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=98.85 E-value=2.5e-08 Score=90.83 Aligned_cols=168 Identities=20% Similarity=0.231 Sum_probs=79.5
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCC-EEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQR-VVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~-~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~ 111 (473)
.+|+|+|+|||||||+++.|+..++..+ ..++.. +. +.........+.|- ..+.+. .....+.-..
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~~~~~~~~~~~--~~---~~~~~~~g~~~~~~-----~~~~~~---~~~~~~~~~~ 68 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLAGDPRVHFVRR--VI---TRPASAGGENHIAL-----STEEFD---HREDGGAFAL 68 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCcCCcEEEeeE--Ec---ccCCCCCCcccccc-----CHHHHH---HHHHCCCEEE
Confidence 4789999999999999999999876322 222211 11 00000001111111 111111 1122221211
Q ss_pred ccccc---cccccccccccccCCCcEEEEecccccCChhhhhcc--CeEEEEecChhHHHHHhhhccccccCCChHHHHH
Q 035513 112 IPDYD---FKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM--SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLD 186 (473)
Q Consensus 112 ~p~~~---~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~--Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 186 (473)
+..+. ......+. ........++++|..... +.++..+ ..+|||++|.+++.+|+..|.. .+.+.+..
T Consensus 69 ~~~~~~~~~g~~~~i~--~~~~~g~~vv~~g~~~~~-~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~----~~~~~~~~ 141 (179)
T TIGR02322 69 SWQAHGLSYGIPAEID--QWLEAGDVVVVNGSRAVL-PEARQRYPNLLVVNITASPDVLAQRLAARGR----ESREEIEE 141 (179)
T ss_pred EEeecCccccChHHHH--HHHhcCCEEEEECCHHHH-HHHHHHCCCcEEEEEECCHHHHHHHHHHcCC----CCHHHHHH
Confidence 11110 01111111 112344567777754322 2222222 2789999999999999998842 12333333
Q ss_pred HHHhhcccchhhhcCCccccccEe-cccCCCchhhhhhhhhee
Q 035513 187 QYARFVKPSFEEFILPSKKYADII-IPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~~ad~v-I~~~~~~~~~i~~i~~~I 228 (473)
.+... +.|. ...+|++ ++++.+.++..+++.+.+
T Consensus 142 rl~~~--~~~~------~~~~~~~vi~~~~~~ee~~~~i~~~l 176 (179)
T TIGR02322 142 RLARS--ARFA------AAPADVTTIDNSGSLEVAGETLLRLL 176 (179)
T ss_pred HHHHH--hhcc------cccCCEEEEeCCCCHHHHHHHHHHHH
Confidence 33211 1111 1346776 555555556666665544
No 118
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=98.84 E-value=8.7e-09 Score=90.75 Aligned_cols=43 Identities=37% Similarity=0.522 Sum_probs=34.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSL 73 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~ 73 (473)
++.+|+|+|.|||||||+|+.|.++|.. ..+.+++.|.+.+.+
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l 45 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGL 45 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhcc
Confidence 4689999999999999999999999853 457888888776443
No 119
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.83 E-value=1.2e-08 Score=94.06 Aligned_cols=115 Identities=18% Similarity=0.240 Sum_probs=66.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH--H-hhccCccCCCCccccHHHHHHHHHHhhcCCcee
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK--L-QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~--~-~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~ 111 (473)
|+|.|++||||||+|+.|+++++ +.+++.|++++...... . .....+ +........+.+.+.+.....
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~---~~~i~~~~l~~~~~~~~~~~~~~~~~~-~~~g~~~~~~~~~~l~~~~l~----- 72 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYG---LPHISTGDLLREEIASGTELGKKAKEY-IDSGKLVPDEIVIKLLKERLK----- 72 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHHHHhcCChHHHHHHHH-HHcCCccCHHHHHHHHHHHHh-----
Confidence 79999999999999999999987 99999998874321110 0 000000 000000111111111111100
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCCh-----hhhh---ccCeEEEEecChhHHHHHhhhccc
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-----RVRD---LMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-----~~~~---~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
.......+|+||...-... .... ..+++|++++|.+++.+|+..|..
T Consensus 73 ----------------~~~~~~~~vldg~Pr~~~q~~~l~~~~~~~~~~~~~i~l~~~~~~~~~Rl~~R~~ 127 (194)
T cd01428 73 ----------------KPDCKKGFILDGFPRTVDQAEALDELLDEGIKPDKVIELDVPDEVLIERILGRRI 127 (194)
T ss_pred ----------------cccccCCEEEeCCCCCHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCc
Confidence 0002345788886432211 1122 568999999999999999999864
No 120
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=98.83 E-value=1.9e-08 Score=92.91 Aligned_cols=29 Identities=28% Similarity=0.398 Sum_probs=26.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQR 60 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~ 60 (473)
+++|+|.|++||||||+++.|+++++..|
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~~~g 31 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQENG 31 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 57899999999999999999999997544
No 121
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.83 E-value=4.7e-08 Score=94.00 Aligned_cols=191 Identities=17% Similarity=0.216 Sum_probs=101.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHhhccCccCCC-CccccHHHHHHHHHHhhcCCce
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEKLQNLHDYNFDH-PDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~~~~~~~~~f~~-~~~~d~~~l~~~l~~l~~g~~i 110 (473)
+|.++|.+||||||+|+.|++.+.. ..+.+++.|.+...+.. +.. .+..-.+.....+..
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~~----------~~~~~e~~~~~~~~~~i~~------- 63 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFPV----------WKEKYEEFIRDSTLYLIKT------- 63 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhHH----------hhHHhHHHHHHHHHHHHHH-------
Confidence 4899999999999999999998853 34566666654321100 000 000000011111111
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCC--hhhh---hc---cCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD--PRVR---DL---MSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~--~~~~---~~---~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.+.....+|+|+...... ..+. .. ....||+++|.+++++|..+|+. . ..+
T Consensus 64 -----------------~l~~~~~VI~D~~~~~~~~r~~l~~~ak~~~~~~~~I~l~~p~e~~~~Rn~~R~~---~-~~~ 122 (249)
T TIGR03574 64 -----------------ALKNKYSVIVDDTNYYNSMRRDLINIAKEYNKNYIIIYLKAPLDTLLRRNIERGE---K-IPN 122 (249)
T ss_pred -----------------HHhCCCeEEEeccchHHHHHHHHHHHHHhCCCCEEEEEecCCHHHHHHHHHhCCC---C-CCH
Confidence 112334678887542211 1111 11 13689999999999999888742 1 223
Q ss_pred HHHH-HHHhhcccchhhhcCCccccccEecccCCC--chhhhhhhhheeeeccccccccccccceeeccccceeeeeeee
Q 035513 183 DVLD-QYARFVKPSFEEFILPSKKYADIIIPRGGD--NDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMHTL 259 (473)
Q Consensus 183 ~~~~-~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~--~~~~i~~i~~~I~~~l~~~~l~~~~~~v~v~~~~~~~~~~~t~ 259 (473)
+... .+.....|.... .+..++++|+.+.. .++..+.+++.+...+. ++...
T Consensus 123 ~~i~~l~~r~e~p~~~~----~wd~~~~~vd~~~~~~~~ei~~~i~~~~~~~~~--------~~~~~------------- 177 (249)
T TIGR03574 123 EVIKDMYEKFDEPGTKY----SWDLPDLTIDTTKKIDYNEILEEILEISENKLK--------IEKPK------------- 177 (249)
T ss_pred HHHHHHHHhhCCCCCCC----CccCceEEecCCCCCCHHHHHHHHHHHhhccCC--------hhhhh-------------
Confidence 3333 333222222211 13568999976532 23344444443322111 11111
Q ss_pred eecCCCCchhhHHHHHHHHHHHHHHHHCC
Q 035513 260 IRDVTTTTHDFVFYADRLIRLVVEHGLGH 288 (473)
Q Consensus 260 lRd~~t~~~~fr~~~~~l~~~l~~ea~~~ 288 (473)
-++-++...|.+-+|+..+-++.+.+..
T Consensus 178 -~~~~~~~~~~l~~ld~~~~~~i~~~~~~ 205 (249)
T TIGR03574 178 -KPKRRTDENILNKIDKRTRQIVGELIKT 205 (249)
T ss_pred -hhcccccccHHHHHHHHHHHHHHHHHHh
Confidence 1223455579999999999888888876
No 122
>PRK01259 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.83 E-value=3.7e-08 Score=97.22 Aligned_cols=114 Identities=18% Similarity=0.171 Sum_probs=90.2
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.+.++|++.++|..+...+.+.+. ++...+.-.|...+. ..-..+..+++|++|+|+|||++||+|+..|++.|+++
T Consensus 158 ~~~vvv~pd~Gg~~~A~~la~~Lg-~~~~~~~k~r~~~~~--~~~~~~~~~~~g~~vliVDDii~TG~T~~~a~~~l~~~ 234 (309)
T PRK01259 158 ENLVVVSPDVGGVVRARALAKRLD-ADLAIIDKRRPRANV--SEVMNIIGDVEGRDCILVDDMIDTAGTLCKAAEALKER 234 (309)
T ss_pred CCcEEEEECCCcHHHHHHHHHHhC-CCEEEEEeeccccee--EEEEeecccCCCCEEEEEecccCcHHHHHHHHHHHHcc
Confidence 467899999999999999988884 554443322222211 11223445789999999999999999999999999999
Q ss_pred CCCCCcEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecCC
Q 035513 391 GVPESNIIFLNL--IAAPQGIHAICKRFPKIKIVTSEIDSS 429 (473)
Q Consensus 391 g~~~~~i~~~~~--~~~~~g~~~~~~~~p~v~i~~~~id~~ 429 (473)
|+ ++|.+++. +.++++++++.++.++--++|-.++..
T Consensus 235 Ga--~~v~~~~tH~i~~~~a~~~l~~~~~~~iv~t~ti~~~ 273 (309)
T PRK01259 235 GA--KSVYAYATHPVLSGGAIERIENSVIDELVVTDSIPLS 273 (309)
T ss_pred CC--CEEEEEEEeeeCChHHHHHHhcCCCCEEEEecCcccc
Confidence 99 67888886 899999999999889988999888754
No 123
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=98.83 E-value=3e-09 Score=95.00 Aligned_cols=149 Identities=19% Similarity=0.258 Sum_probs=81.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccc-cHHHHHHHHHHhhcCCceecccccccc
Q 035513 41 TASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAF-DTELLLSDMEKLKHGQAVSIPDYDFKS 119 (473)
Q Consensus 41 sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~-d~~~l~~~l~~l~~g~~i~~p~~~~~~ 119 (473)
+||||||+++.||+.++ +.++++|+++.........++ |...+.. ....-.+.+..+..
T Consensus 1 ~GsGKStvg~~lA~~L~---~~fiD~D~~i~~~~g~si~~i----~~~~G~~~fr~~E~~~l~~l~~------------- 60 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLG---RPFIDLDDEIEERTGMSISEI----FAEEGEEAFRELESEALRELLK------------- 60 (158)
T ss_dssp TTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHTSHHHHH----HHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred CCCcHHHHHHHHHHHhC---CCccccCHHHHHHhCCcHHHH----HHcCChHHHHHHHHHHHHHHhc-------------
Confidence 69999999999999998 999999988732221111110 1000000 01111233333322
Q ss_pred ccccccccccCCCcEEEEecccccCChhhh---hccCeEEEEecChhHHHHHhhhccccccCCChH---HHHHHHHhhcc
Q 035513 120 HKRKQQSRLINPSDVFILEGILVLHDPRVR---DLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE---DVLDQYARFVK 193 (473)
Q Consensus 120 ~~~~~~~~~~~~~~viIlEG~~~l~~~~~~---~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~---~~~~~~~~~~~ 193 (473)
.. ..||.-|......+... .....+|||++++++..+|+..++.+..-.... .....+. ...
T Consensus 61 ----------~~-~~VIa~GGG~~~~~~~~~~L~~~g~vI~L~~~~~~l~~Rl~~~~~Rp~l~~~~~~~~~~~~~~-~R~ 128 (158)
T PF01202_consen 61 ----------EN-NCVIACGGGIVLKEENRELLKENGLVIYLDADPEELAERLRARDNRPLLKGKMEHEEILELLF-ERE 128 (158)
T ss_dssp ----------SS-SEEEEE-TTGGGSHHHHHHHHHHSEEEEEE--HHHHHHHHHHHCTSGGTCSHHHHHHHHHHHH-HHH
T ss_pred ----------cC-cEEEeCCCCCcCcHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCChHHHHHHHHH-HHH
Confidence 11 34444443333334332 233579999999999999998775422111222 2233333 334
Q ss_pred cchhhhcCCccccccEecccCCCc-hhhhhhhhhee
Q 035513 194 PSFEEFILPSKKYADIIIPRGGDN-DVAIDLIVQHI 228 (473)
Q Consensus 194 ~~~~~~i~~~~~~ad~vI~~~~~~-~~~i~~i~~~I 228 (473)
+.| ...++++++.+... ++.++++++.|
T Consensus 129 ~~Y-------~~~a~~~v~~~~~~~~~i~~~i~~~l 157 (158)
T PF01202_consen 129 PLY-------EQAADIVVDTDGSPPEEIAEEILEFL 157 (158)
T ss_dssp HHH-------HHHSSEEEETSSCHHHHHHHHHHHHH
T ss_pred HHH-------HhcCeEEEeCCCCCHHHHHHHHHHHh
Confidence 555 45689999877665 66677777665
No 124
>PRK06827 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.82 E-value=3.5e-08 Score=99.32 Aligned_cols=111 Identities=20% Similarity=0.298 Sum_probs=85.3
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC-----CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHH
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNS-----GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAIS 385 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~-----~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~ 385 (473)
.++++|+.-.+|......+.+.+. ++.+.+--.|+..+ .+..++..+|.+++|++|+|+|||++||+|+..|++
T Consensus 207 ~~~VVVsPD~Gg~~rA~~~A~~Lg-~~~ai~~K~R~~~~~~~g~~~~~~~~~~g~dV~gr~vIIVDDII~TG~Tl~~aa~ 285 (382)
T PRK06827 207 DHLMVISPDTGAMDRAKYYASVLG-VDLGLFYKRRDYSRVVNGRNPIVAHEFLGRDVEGKDVLIVDDMIASGGSMIDAAK 285 (382)
T ss_pred CCcEEEEECccchHHHHHHHHHhC-CCEEEEEcccCCcccccCCCceEEEecCCcccCCCEEEEEeCCcCcHHHHHHHHH
Confidence 356777777788888777777763 55555544454321 234566777778999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEEEeC-HHHHHHHHHhCCC--c-EEEEE
Q 035513 386 LILSKGVPESNIIFLNLIAA-PQGIHAICKRFPK--I-KIVTS 424 (473)
Q Consensus 386 ~L~~~g~~~~~i~~~~~~~~-~~g~~~~~~~~p~--v-~i~~~ 424 (473)
.|+++|+ ++|++++..+. +.|++++.++||+ + +|++.
T Consensus 286 ~Lk~~GA--~~V~~~~tH~vf~~a~~~l~~~~~~g~i~~iv~T 326 (382)
T PRK06827 286 ELKSRGA--KKIIVAATFGFFTNGLEKFDKAYEEGYFDRIIGT 326 (382)
T ss_pred HHHHcCC--CEEEEEEEeecChHHHHHHHhhcccCCCCEEEEe
Confidence 9999999 78999998876 6999999998864 3 55554
No 125
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.82 E-value=6.7e-09 Score=110.47 Aligned_cols=160 Identities=13% Similarity=0.148 Sum_probs=89.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHH-HHHHHHhhcCCc
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELL-LSDMEKLKHGQA 109 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l-~~~l~~l~~g~~ 109 (473)
+...|.+.|.+||||||+++.|++.++ +.++++|.++.........++ |...+.-.+..+ .+.+..+..
T Consensus 5 ~~~~i~LiG~~GaGKttvg~~LA~~L~---~~fiD~D~~ie~~~g~si~ei----f~~~Ge~~FR~~E~~~l~~~~~--- 74 (542)
T PRK14021 5 RRPQAVIIGMMGAGKTRVGKEVAQMMR---LPFADADVEIEREIGMSIPSY----FEEYGEPAFREVEADVVADMLE--- 74 (542)
T ss_pred CCccEEEECCCCCCHHHHHHHHHHHhC---CCEEEchHHHHHHHCcCHHHH----HHHHHHHHHHHHHHHHHHHHHh---
Confidence 446799999999999999999999998 999999987743322221111 211111111111 222333221
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCChhhhh-------ccCeEEEEecChhHHHHHhhhccccc--cCCC
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD-------LMSMKIFVDTDSDVRLSRRIQRDTVE--RGRD 180 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~-------~~Dl~I~L~~~~e~~~~R~~~R~~~~--~~~~ 180 (473)
....||--|......+..+. ....+|||+++++++.+|+..+..+. .+..
T Consensus 75 ---------------------~~~~VIs~GGG~v~~~~n~~~L~~~~~~~g~vv~L~~~~~~l~~Rl~~~~~RPll~~~~ 133 (542)
T PRK14021 75 ---------------------DFDGIFSLGGGAPMTPSTQHALASYIAHGGRVVYLDADPKEAMERANRGGGRPMLNGDA 133 (542)
T ss_pred ---------------------cCCeEEECCCchhCCHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHhCCCCCCCCCCCc
Confidence 11233433333333332222 22479999999999999985432111 1112
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHIL 229 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~ 229 (473)
.+.+.+.|.. ..+.| .+.||++|+.+. +.++..+.+++.+.
T Consensus 134 ~~~~~~l~~~-R~~~Y-------~~~Ad~~i~~~~~~~~~~~~~i~~~~~ 175 (542)
T PRK14021 134 NKRWKKLFKQ-RDPVF-------RQVANVHVHTRGLTPQAAAKKLIDMVA 175 (542)
T ss_pred HHHHHHHHHH-HHHHH-------HhhCCEEEECCCCCHHHHHHHHHHHHH
Confidence 2333333433 34454 567999998664 33455566666554
No 126
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=98.81 E-value=3.2e-08 Score=88.32 Aligned_cols=171 Identities=18% Similarity=0.191 Sum_probs=87.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecC-CCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD-SFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D-~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
++.+++|+||||+||||+.+.|.+..+ . ...+|.- .-.| ..-.+..+|.|-+.+ ++...+..++-
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~-l-~~SVS~TTR~pR----~gEv~G~dY~Fvs~~--------EF~~~i~~~~f 68 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDK-L-RFSVSATTRKPR----PGEVDGVDYFFVTEE--------EFEELIERDEF 68 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcC-e-EEEEEeccCCCC----CCCcCCceeEeCCHH--------HHHHHHhcCCc
Confidence 678999999999999999999988762 2 2223321 1100 001122345554433 22333444555
Q ss_pred eecccccccccc----ccccccccCCCcEEEEec-ccccCChhhhhcc-C-eEEEEecChhHHHHHhhhccccccCCChH
Q 035513 110 VSIPDYDFKSHK----RKQQSRLINPSDVFILEG-ILVLHDPRVRDLM-S-MKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 110 i~~p~~~~~~~~----~~~~~~~~~~~~viIlEG-~~~l~~~~~~~~~-D-l~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
+.+..|....+. .++.. +..+.-+++|- +... ..+++.+ + ..||+.+|.-+.++|++.+...+ +.+
T Consensus 69 LE~a~~~gnyYGT~~~~ve~~--~~~G~~vildId~qGa--~qvk~~~p~~v~IFi~pPs~eeL~~RL~~Rgtd---s~e 141 (191)
T COG0194 69 LEWAEYHGNYYGTSREPVEQA--LAEGKDVILDIDVQGA--LQVKKKMPNAVSIFILPPSLEELERRLKGRGTD---SEE 141 (191)
T ss_pred EEEEEEcCCcccCcHHHHHHH--HhcCCeEEEEEehHHH--HHHHHhCCCeEEEEEcCCCHHHHHHHHHccCCC---CHH
Confidence 554444332221 12222 22233334431 2211 2233333 3 68999998877777666543322 333
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+..++... ...... ....|++|.|+ +.+.++.++...+.
T Consensus 142 ~I~~Rl~~a-~~Ei~~-----~~~fdyvivNd-d~e~a~~~l~~ii~ 181 (191)
T COG0194 142 VIARRLENA-KKEISH-----ADEFDYVIVND-DLEKALEELKSIIL 181 (191)
T ss_pred HHHHHHHHH-HHHHHH-----HHhCCEEEECc-cHHHHHHHHHHHHH
Confidence 333333222 111111 35589999888 66667666665554
No 127
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.80 E-value=1e-08 Score=93.34 Aligned_cols=141 Identities=19% Similarity=0.228 Sum_probs=85.5
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecCCCCCCCCHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D~~~~~~~~~~~ 78 (473)
.+|+++|+.| +..+|+++ +.+.+++.+++|+|||||||||+.+.|...-. ..|-..++.++..........
T Consensus 1 ~mi~i~~l~K~fg~~~VLkgi-----~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~ 75 (240)
T COG1126 1 MMIEIKNLSKSFGDKEVLKGI-----SLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKL 75 (240)
T ss_pred CeEEEEeeeEEeCCeEEecCc-----ceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHH
Confidence 3799999977 67899999 99999999999999999999999999975322 245566655444322111111
Q ss_pred hhccCccCCCCccc-------------------cH----HHHHHHHHHhhcCC-ceecc-cccccccccccccccc-CCC
Q 035513 79 QNLHDYNFDHPDAF-------------------DT----ELLLSDMEKLKHGQ-AVSIP-DYDFKSHKRKQQSRLI-NPS 132 (473)
Q Consensus 79 ~~~~~~~f~~~~~~-------------------d~----~~l~~~l~~l~~g~-~i~~p-~~~~~~~~~~~~~~~~-~~~ 132 (473)
.......|.+..-| .. +...+.|+.+.-.. .-.|| ..+....+|+..++.+ -++
T Consensus 76 R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P 155 (240)
T COG1126 76 RRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDP 155 (240)
T ss_pred HHhcCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCC
Confidence 12222334443211 11 11112222221111 11234 3455566666665553 368
Q ss_pred cEEEEecccccCChhh
Q 035513 133 DVFILEGILVLHDPRV 148 (473)
Q Consensus 133 ~viIlEG~~~l~~~~~ 148 (473)
+++++|.+....+|.+
T Consensus 156 ~vmLFDEPTSALDPEl 171 (240)
T COG1126 156 KVMLFDEPTSALDPEL 171 (240)
T ss_pred CEEeecCCcccCCHHH
Confidence 9999999888878754
No 128
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=98.80 E-value=1.1e-08 Score=96.55 Aligned_cols=74 Identities=14% Similarity=0.172 Sum_probs=48.5
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCC-ccccccEecccCCCchhhhhhhhheee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILP-SKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
..|++|||++|++.+++|+.+|+.. ....+...|++.....|..++.+ +...+++++.+. ++...++.+++.|.
T Consensus 142 ~Pd~~i~l~~~~~~~~~Ri~~R~~~----~e~~~~~~yl~~l~~~y~~~~~~~~~~~~~~i~id~-~~~~~~e~i~~~I~ 216 (219)
T cd02030 142 PPHLVIYLDVPVPEVQKRIKKRGDP----HEMKVTSAYLQDIENAYKKTFLPEISEHSEVLQYDW-TEAGDTEKVVEDIE 216 (219)
T ss_pred CCCEEEEEeCCHHHHHHHHHHcCCc----hhhcccHHHHHHHHHHHHHHHHHhhccCCCEEEEeC-CChhhHHHHHHHHH
Confidence 3589999999999999999888532 11234445776777777777544 334456655443 45566776666554
No 129
>PRK15423 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.80 E-value=1e-07 Score=86.38 Aligned_cols=120 Identities=16% Similarity=0.189 Sum_probs=94.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-IKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~ 344 (473)
+..++...+++|+..+.+..-. ...++++|+|+|+|..+..-+.+.+.- ..++++.++
T Consensus 10 ~~~~i~~~i~~lA~~I~~~~~~---------------------~~~~~vvvgI~~Gg~~fa~~L~~~L~~~~~v~~l~~s 68 (178)
T PRK15423 10 PEAEIKARIAELGRQITERYKD---------------------SGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS 68 (178)
T ss_pred CHHHHHHHHHHHHHHHHHHhcc---------------------cCCCeEEEEEecCChHHHHHHHHHhCCCcceeEEEEE
Confidence 4567888888888877653211 024588999999999999999999863 578888888
Q ss_pred EcC-CC---CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 345 REG-NS---GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 345 r~~-~~---~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+-. .+ ........+|.+++|++|+|+|+++.||.|+.++.+.|+++|+ +++.+++++-.+.+
T Consensus 69 sY~~~~~~~~~v~i~~~~~~~v~gk~VLlVDDIiDTG~TL~~l~~~l~~~~~--~~v~~avL~~K~~~ 134 (178)
T PRK15423 69 SYGSGMSTTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREP--KSLAICTLLDKPSR 134 (178)
T ss_pred EecCCCcccCceEEecCCCCCCCCCEEEEEeeecCchHHHHHHHHHHHhCCC--CEEEEEEEEECCCC
Confidence 753 22 2223345567789999999999999999999999999999998 78999999988875
No 130
>PRK13973 thymidylate kinase; Provisional
Probab=98.80 E-value=2.7e-08 Score=93.38 Aligned_cols=35 Identities=26% Similarity=0.371 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+.+|+|.|..||||||+++.|++.+...+..++.+
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~ 37 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVT 37 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57899999999999999999999996555666644
No 131
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=98.79 E-value=1.7e-09 Score=92.45 Aligned_cols=113 Identities=23% Similarity=0.337 Sum_probs=58.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceeccc
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPD 114 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~ 114 (473)
|+|+|.+||||||+|+.|+++++ ..+. |.+............ ........++.+.....+..+....
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~~---~~~~--~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~------ 67 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERLG---DIIR--DIAPEEDIVDSIDDN--PDWKENKRLDMEFQDELLDSIIQAI------ 67 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHC---HHHH--HHHHHTTSHSSHCCH--HCCCCCCCSCHHHHHHHHHHHHHHH------
T ss_pred CEEECCCCCCHHHHHHHHHHHHC---cHHH--HHHHhcCCccccccc--chhhhhhhhhhhhHHHHHHHHHHhh------
Confidence 78999999999999999999862 1110 000000000000000 0111122333333333333332200
Q ss_pred cccccccccccccccCCCcEEEEecccccCChhhhhccCeE-EEEecChhHHHHHhhhccc
Q 035513 115 YDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMK-IFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~-I~L~~~~e~~~~R~~~R~~ 174 (473)
........+|+|++....... ...+.. |||+||++++++|+..|..
T Consensus 68 ------------~~~~~~~~~iid~~~~~~~~~--~~~~~~~i~L~~~~e~~~~R~~~R~~ 114 (129)
T PF13238_consen 68 ------------RRMNKGRNIIIDGILSNLELE--RLFDIKFIFLDCSPEELRKRLKKRGR 114 (129)
T ss_dssp ------------HHHTTTSCEEEEESSEEECET--TEEEESSEEEE--HHHHHHHHHCTTT
T ss_pred ------------cccccCCcEEEecccchhccc--ccceeeEEEEECCHHHHHHHHHhCCC
Confidence 012456678888877654322 222233 9999999999999998854
No 132
>PRK12338 hypothetical protein; Provisional
Probab=98.79 E-value=9.9e-09 Score=100.55 Aligned_cols=39 Identities=21% Similarity=0.466 Sum_probs=32.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.+|.+|+|+|+|||||||+|+.|+++++ +.++..+|+.+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~---~~~~~~tD~~r 40 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLN---IKHLIETDFIR 40 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCC---CeEEccChHHH
Confidence 3578999999999999999999999997 77775555553
No 133
>PRK14526 adenylate kinase; Provisional
Probab=98.77 E-value=2.9e-08 Score=92.71 Aligned_cols=35 Identities=17% Similarity=0.357 Sum_probs=31.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|+|.|++||||||+++.|++.++ +.+++.+++++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~---~~~is~G~llr 36 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELN---YYHISTGDLFR 36 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CceeecChHHH
Confidence 378999999999999999999987 89999998874
No 134
>PTZ00271 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.75 E-value=7.7e-08 Score=89.15 Aligned_cols=124 Identities=15% Similarity=0.217 Sum_probs=94.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC----CceeeEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK----GIKIGKI 341 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p----~a~~g~i 341 (473)
+..++...+++|+..+.+..- .+. +.+ .+++++|.|||+|..|..-|.+.+. ...++++
T Consensus 29 s~e~I~~~i~~LA~~I~~~~~-~~~--------~~~--------~~~~vivgVlkGg~~fa~dL~r~L~~~~~~~~vdfi 91 (211)
T PTZ00271 29 TQEQVWAATAKCAKKIAEDYR-SFK--------LTT--------ENPLYLLCVLKGSFIFTADLARFLADEGVPVKVEFI 91 (211)
T ss_pred CHHHHHHHHHHHHHHHHHHhh-hcc--------ccC--------CCCeEEEEEcCCCHHHHHHHHHHhcccCCCeeEEEE
Confidence 556788888888888865421 110 000 2468899999999999888877763 3578899
Q ss_pred EEEEcC-CC---CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 342 LIHREG-NS---GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 342 ~~~r~~-~~---~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
.+++-. .+ +.......++.+++|++|||+|+++.||.|+.++++.|+++|+ ++|.+++++..|.+
T Consensus 92 ~vssY~~~~~s~g~~~i~~~~~~~i~gk~VLIVDDIvDTG~TL~~v~~~l~~~~p--~svk~avL~dK~~~ 160 (211)
T PTZ00271 92 CASSYGTGVETSGQVRMLLDVRDSVENRHILIVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSG 160 (211)
T ss_pred EEEecCCCCcccCceEEecCCCCCCCCCEEEEEecccCCHHHHHHHHHHHHhcCC--CEEEEEEEEEcccC
Confidence 887742 22 2223345677799999999999999999999999999999987 79999999998876
No 135
>PRK02812 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.74 E-value=1e-07 Score=94.61 Aligned_cols=109 Identities=12% Similarity=0.200 Sum_probs=88.9
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++++|+.-.+|..++..+.+.++.++++.+.-+|+..+.. ....++.+++|++|+|+|++++||+|+..|++.|+++
T Consensus 179 ~~~vvVsPD~gg~~ra~~~A~~L~~~~~~~~~k~R~~~~~~--~~~~~~~~v~g~~viiVDDii~TG~T~~~a~~~L~~~ 256 (330)
T PRK02812 179 EDIVVVSPDVGGVARARAFAKKLNDAPLAIIDKRRQAHNVA--EVLNVIGDVKGKTAILVDDMIDTGGTICEGARLLRKE 256 (330)
T ss_pred CCeEEEEECCccHHHHHHHHHHhCCCCEEEEEeeccCCcee--eeEeccccCCCCEEEEEccccCcHHHHHHHHHHHhcc
Confidence 35789999999999999999999888888887777644322 2345666899999999999999999999999999999
Q ss_pred CCCCCcEEEEE--EEeCHHHHHHHHHhCCCcEEEEE
Q 035513 391 GVPESNIIFLN--LIAAPQGIHAICKRFPKIKIVTS 424 (473)
Q Consensus 391 g~~~~~i~~~~--~~~~~~g~~~~~~~~p~v~i~~~ 424 (473)
|+ ++|++++ -+.++++++++.+. +=-+|++.
T Consensus 257 Ga--~~v~~~~tH~v~s~~a~~~l~~~-~id~iv~t 289 (330)
T PRK02812 257 GA--KQVYACATHAVFSPPAIERLSSG-LFEEVIVT 289 (330)
T ss_pred CC--CeEEEEEEcccCChHHHHHHhhC-CCCEEEEe
Confidence 99 7888888 68999999999853 22245543
No 136
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=98.74 E-value=2.8e-08 Score=75.59 Aligned_cols=60 Identities=37% Similarity=0.735 Sum_probs=46.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
+|+|+|++||||||+++.|++.++..++.+++.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~----------------------------------------------- 33 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE----------------------------------------------- 33 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE-----------------------------------------------
Confidence 488999999999999999998852122333211
Q ss_pred ccccccccccccccccCCCcEEEEecccccCCh---hhhhccCeEEEEec
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---RVRDLMSMKIFVDT 160 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---~~~~~~Dl~I~L~~ 160 (473)
++++||.+..... ......|+.||+++
T Consensus 34 --------------------~~I~eg~~~~~~~~~~~~~~~~d~~Iyld~ 63 (69)
T cd02019 34 --------------------IVILEGLYASYKSRDARIRDLADLKIYLDA 63 (69)
T ss_pred --------------------EEEecchhhhhhhHHhhccccccEEEEEEe
Confidence 8899999887766 67788899999997
No 137
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=98.73 E-value=2.5e-07 Score=84.00 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=32.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+.+++|.|++||||||+++.|+..++ ..+++.|+++.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~---~~~i~gd~~~~ 39 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS---AKFIDGDDLHP 39 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC---CEEECCcccCC
Confidence 45899999999999999999999887 57889988863
No 138
>PRK09162 hypoxanthine-guanine phosphoribosyltransferase; Provisional
Probab=98.73 E-value=2.3e-07 Score=84.64 Aligned_cols=117 Identities=15% Similarity=0.169 Sum_probs=87.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-CceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-GIKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~~ 344 (473)
+..++...+++|+..+.... . . .+.++|+|.+.|..+...+.+.+. ....+.+...
T Consensus 18 s~~~i~~~i~~la~~i~~~~----~-----------~--------~~~viV~i~~gg~~~A~~La~~l~~~~~~~~l~~~ 74 (181)
T PRK09162 18 SAAEVEAAIDRMADEITADL----A-----------D--------ENPLVLCVMGGGLVFTGQLLPRLDFPLEFDYLHAT 74 (181)
T ss_pred cHHHHHHHHHHHHHHHHHHc----C-----------C--------CCeEEEEECCCcHHHHHHHHHHcCCCcccCEEEEE
Confidence 44577777888877775532 1 0 134889999999999999999886 3355677666
Q ss_pred EcCCCC---ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHH
Q 035513 345 REGNSG---RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQ 407 (473)
Q Consensus 345 r~~~~~---~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~ 407 (473)
|...+. .......++.+++|++|+|+|++++||.|+.++.+.|++.|+ ++|.++++...+.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~v~gk~VLIVDDIidTG~Tl~~~~~~Lk~~Ga--~~V~~avL~~k~~ 138 (181)
T PRK09162 75 RYRNETTGGELVWKVKPRESLKGRTVLVVDDILDEGHTLAAIRDRCLEMGA--AEVYSAVLVDKTH 138 (181)
T ss_pred ecCCCccCCceeEecCCCCCCCCCEEEEEccccCcHHHHHHHHHHHHhCCC--CEEEEEEEEEcCc
Confidence 654422 123334455678999999999999999999999999999998 7898888776544
No 139
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=98.72 E-value=2.4e-08 Score=90.96 Aligned_cols=25 Identities=20% Similarity=0.424 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+|.|++||||||+++.|++.++
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~ 26 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDP 26 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCc
Confidence 5799999999999999999998765
No 140
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.72 E-value=4.9e-08 Score=83.44 Aligned_cols=106 Identities=15% Similarity=0.224 Sum_probs=73.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCC-Cc--cccHHHHHHHHHHhhcCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDH-PD--AFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~-~~--~~d~~~l~~~l~~l~~g~ 108 (473)
.+.|.|+|.||+||||+|..||+.++ +.+|...++.++-.-.. .|+. .. -+|-+.+.+.|..+..
T Consensus 7 ~PNILvtGTPG~GKstl~~~lae~~~---~~~i~isd~vkEn~l~~-------gyDE~y~c~i~DEdkv~D~Le~~m~-- 74 (176)
T KOG3347|consen 7 RPNILVTGTPGTGKSTLAERLAEKTG---LEYIEISDLVKENNLYE-------GYDEEYKCHILDEDKVLDELEPLMI-- 74 (176)
T ss_pred CCCEEEeCCCCCCchhHHHHHHHHhC---CceEehhhHHhhhcchh-------cccccccCccccHHHHHHHHHHHHh--
Confidence 45699999999999999999999887 89999888774321110 0111 01 2444556666665433
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccc
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
.+..++-..|.-.+.+ .+||+++.|.+|-++.+.|+..|..
T Consensus 75 ---------------------~Gg~IVDyHgCd~Fpe----rwfdlVvVLr~~~s~LY~RL~sRgY 115 (176)
T KOG3347|consen 75 ---------------------EGGNIVDYHGCDFFPE----RWFDLVVVLRTPNSVLYDRLKSRGY 115 (176)
T ss_pred ---------------------cCCcEEeecccCccch----hheeEEEEEecCchHHHHHHHHcCC
Confidence 3445555555555443 5789999999999999999999864
No 141
>PTZ00149 hypoxanthine phosphoribosyltransferase; Provisional
Probab=98.72 E-value=8.5e-08 Score=90.42 Aligned_cols=118 Identities=15% Similarity=0.122 Sum_probs=87.9
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC----------
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG---------- 335 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~---------- 335 (473)
+..+.+..+++|+..+.+.. . .+++++|.||++|..|...|.+.+..
T Consensus 59 s~~~I~~rI~~LA~~I~~dy----~-------------------~~~~vilgILkGg~~FaadL~~~L~~~~~~~~~~~~ 115 (241)
T PTZ00149 59 PNGLIKDRVEKLAYDIKQVY----G-------------------NEELHILCILKGSRGFFSALVDYLNRIHNYSSTESP 115 (241)
T ss_pred CHHHHHHHHHHHHHHHHHHc----C-------------------CCCeEEEEECCCCHHHHHHHHHHHhhhhhccccccC
Confidence 45578888888887775532 0 14678999999999988777666642
Q ss_pred cee---eEEEEEEcCC---CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 336 IKI---GKILIHREGN---SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 336 a~~---g~i~~~r~~~---~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
.++ ++|.+++=.. +++.......-.+++|++|+|+|+++.||.|+.++++.|++.|+ ++|.+++++..+.+
T Consensus 116 ~~~~~~dfi~vsSY~~~~s~g~v~i~~~~~~~l~gk~VLIVDDIidTG~Tl~~~~~~L~~~g~--~~V~va~L~~K~~~ 192 (241)
T PTZ00149 116 KPPYQEHYVRVKSYCNDESTGKLEIVSDDLSCLKDKHVLIVEDIIDTGNTLVKFCEYLKKFEP--KTIRIATLFEKRTP 192 (241)
T ss_pred cccccccEEEEEEccCCCcCCceEEecccccccCCCEEEEEEeEeChHHHHHHHHHHHHhcCC--CEEEEEEEEecCcc
Confidence 234 8888876322 23322222333378999999999999999999999999999998 78999999988764
No 142
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.4e-07 Score=87.45 Aligned_cols=189 Identities=21% Similarity=0.230 Sum_probs=90.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH-HhhccCc--cCCCCc------cccHHH-HHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK-LQNLHDY--NFDHPD------AFDTEL-LLSD 100 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~-~~~~~~~--~f~~~~------~~d~~~-l~~~ 100 (473)
+++.|+|.|.-||||||+++.|.+.+...+..++-+-.--.....+. ++...+. .++ +. ..|+.. +.+.
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~~~~~-~~~e~lLfaadR~~h~~~~ 80 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGEEKLS-PKAEALLFAADRAQHLEEV 80 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCccCCC-HHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999866654442211000000111 1111100 010 10 111111 2222
Q ss_pred -HHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhh---ccCeEEEEecChhHHHHHhhhcccc-
Q 035513 101 -MEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD---LMSMKIFVDTDSDVRLSRRIQRDTV- 175 (473)
Q Consensus 101 -l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~---~~Dl~I~L~~~~e~~~~R~~~R~~~- 175 (473)
...+..|..|....|..+...-... ..-+-++....++ .+.. ..|+++|+++|+++.++|..+|...
T Consensus 81 i~pal~~g~vVI~DRy~~Ss~AYQg~------~~~~~~~~~~~l~--~~~~~~~~PD~ti~Ldv~~e~al~R~~~r~~~~ 152 (208)
T COG0125 81 IKPALKEGKVVICDRYVDSSLAYQGG------GRGLDLDWVLALN--EFAPGGLKPDLTLYLDVPPEVALERIRKRGELR 152 (208)
T ss_pred HHHhhcCCCEEEECCcccHHHHhhhh------ccCCCHHHHHHHH--HhccCCCCCCEEEEEeCCHHHHHHHHHhcCCcc
Confidence 2234445555555553332210000 0000000000000 1111 4589999999999999999998654
Q ss_pred ccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 176 ERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
.+- +.....+.+..+..|......... .-++|+.+.+.++..+.+.+.+...+
T Consensus 153 ~r~---E~~~~~f~~kvr~~Y~~la~~~~~-r~~vIda~~~~e~v~~~i~~~l~~~l 205 (208)
T COG0125 153 DRF---EKEDDEFLEKVREGYLELAAKFPE-RIIVIDASRPLEEVHEEILKILKERL 205 (208)
T ss_pred chh---hhHHHHHHHHHHHHHHHHHhhCCC-eEEEEECCCCHHHHHHHHHHHHHHhh
Confidence 221 111113444444444444222111 34677777565555566666555443
No 143
>COG0634 Hpt Hypoxanthine-guanine phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.71 E-value=1.2e-07 Score=83.31 Aligned_cols=96 Identities=20% Similarity=0.353 Sum_probs=83.3
Q ss_pred ceeeEEEeeccCchhHHHHHhhcC-CceeeEEEEEEcCC----CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHH
Q 035513 311 RRLCGISIIRSGESMENALRACCK-GIKIGKILIHREGN----SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAIS 385 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~~r~~~----~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~ 385 (473)
+++.+|+||+++.+|+.-|.+.+. ...+-++.+++=.. ++..-....|-.+++|+.|+|+|+++.||.|+..+.+
T Consensus 35 ~~~~vv~iLkGs~~F~~dL~r~i~~~~e~dFm~vSSYg~~t~ssg~v~i~kDld~di~grdVLiVeDIiDsG~TLs~i~~ 114 (178)
T COG0634 35 KDPLVVGVLKGSFPFMADLIRAIDFPLEVDFMHVSSYGGGTSSSGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRD 114 (178)
T ss_pred CceEEEEEcccchhhHHHHHHhcCCCceeEEEEEeccCCCcccCCceEEecccccCCCCCeEEEEecccccChhHHHHHH
Confidence 778899999999999888888876 88899999997322 2235556778889999999999999999999999999
Q ss_pred HHHhcCCCCCcEEEEEEEeCHHH
Q 035513 386 LILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 386 ~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
.|+.+|+ +++.+++++-.|++
T Consensus 115 ~l~~r~a--~sv~i~tLldK~~~ 135 (178)
T COG0634 115 LLKERGA--KSVRIATLLDKPER 135 (178)
T ss_pred HHHhCCC--CeEEEEEEeeCccc
Confidence 9999999 89999999998885
No 144
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=98.71 E-value=3.8e-07 Score=90.70 Aligned_cols=227 Identities=16% Similarity=0.197 Sum_probs=113.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEecCCCCCCCCHHHHhhccCccCCCCcccc--HHHHHH----HHHHh
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR---DQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD--TELLLS----DMEKL 104 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~---~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d--~~~l~~----~l~~l 104 (473)
+++++|++||||||+++.|++.+. +..+.+++.|+++.+........ ...++.|. +..+.+ .+..+
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~~~~g~~v~~~~~Dd~i~~~~~~~~~~-----~~~~~~~k~~R~~i~~~le~~v~a~ 75 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLRRERGWAVAVITYDDIIPEAAFELDQS-----REIPSQWKQFRQELLKYLEHFLVAV 75 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHHhccCCeEEEEcccccccccchhhhcC-----CCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 368999999999999999998874 24588999999995433221100 00111111 122222 22222
Q ss_pred hcCCceeccccccccccc------c-----------------cc--ccccCCCcEEEEecccccCChh--h---hhcc--
Q 035513 105 KHGQAVSIPDYDFKSHKR------K-----------------QQ--SRLINPSDVFILEGILVLHDPR--V---RDLM-- 152 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~------~-----------------~~--~~~~~~~~viIlEG~~~l~~~~--~---~~~~-- 152 (473)
..|.....| -.+....+ + .. ......+.++|+|+.+...... + ....
T Consensus 76 ~~g~~~~~~-~~~~~~~~~~nv~~L~~~g~vv~L~as~e~~~~rLi~~~LsrpllvilDd~fy~ks~Ryel~~LAr~~~~ 154 (340)
T TIGR03575 76 INGSELSAP-PGKTEGMWEDFVDCLKEQGLIISSGASEAQGCHSLTKPAVSRPLCLVLDDNFYYQSMRYEVYQLARKYSL 154 (340)
T ss_pred cCcccccCC-cccchhhhHHHHHHHHhCCeEEEcCCcHHHHHHHHhHHHHhCCCCceecCCCCCHHHHHHHHHHHHHhCC
Confidence 222222111 00000000 0 00 0112445688999766543221 1 1111
Q ss_pred -CeEEEEecChhHHHHHhhhccccccCCChHHHHHH-HHhhcccchhhhcCCccccccEecccCCCc---hhhhhhhhhe
Q 035513 153 -SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ-YARFVKPSFEEFILPSKKYADIIIPRGGDN---DVAIDLIVQH 227 (473)
Q Consensus 153 -Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~---~~~i~~i~~~ 227 (473)
-..||+++|.+++++|..+|.. ...+++++. +.+...|.-+.+ .+....++++..... ...+..++..
T Consensus 155 ~~~~V~ld~ple~~l~RN~~R~~----~v~devie~m~~r~E~P~~~~n---rWd~pl~~v~~~~~~~~~~~~~~~~~~~ 227 (340)
T TIGR03575 155 GFCQLFLDCPVESCLLRNKQRPV----PLPDETIQLMGRKIEKPNPEKN---AWEHNSLVIQSSACISEDSLEVTDLLNT 227 (340)
T ss_pred CEEEEEEeCCHHHHHHHHhcCCC----CCCHHHHHHHHHHhcCCCCCCC---CCCCCeEEEecCccccccchhHHHHHHH
Confidence 1789999999999999988852 234444443 333334442111 135566777653222 1223333333
Q ss_pred eeeccccccccccccceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCC
Q 035513 228 ILTKLGQHDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHL 289 (473)
Q Consensus 228 I~~~l~~~~l~~~~~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l 289 (473)
+ +..+ +....+|.- |.=-++-.....|.+-+|++.+-++.++++..
T Consensus 228 ~---~~~p-~~~~~~n~~------------~~~~~~~~~~~n~lh~lD~~tr~ii~~i~~~~ 273 (340)
T TIGR03575 228 A---LENP-IKCVEENLE------------QKETDRIICSTNILHQADQTLRRIISQTMREA 273 (340)
T ss_pred H---HhCC-CCCCCCccc------------ccccccCCCcccHHHHHHHHHHHHHHHHHHHH
Confidence 2 3221 111111111 11012223455799999999998888887654
No 145
>PRK00889 adenylylsulfate kinase; Provisional
Probab=98.71 E-value=2.9e-08 Score=90.10 Aligned_cols=41 Identities=22% Similarity=0.409 Sum_probs=33.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~ 70 (473)
.++.+|+|+|++||||||+|+.|+..+... .+.+++.|.+.
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~ 44 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVR 44 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHH
Confidence 456799999999999999999999988533 36778888653
No 146
>PF00156 Pribosyltran: Phosphoribosyl transferase domain; InterPro: IPR000836 The name PRT comes from phosphoribosyltransferase (PRTase) enzymes, which carry out phosphoryl transfer reactions on 5-phosphoribosyl-alpha1-pyrophosphate PRPP, an activated form of ribose-5-phosphate. Members of Phosphoribosyltransferase (PRT) are catalytic and are regulatory proteins involved in nucleotide synthesis and salvage []. This includes a range of diverse phosphoribosyl transferase enzymes including adenine phosphoribosyltransferase (2.4.2.7 from EC); hypoxanthine-guanine-xanthine phosphoribosyltransferase; hypoxanthine phosphoribosyltransferase (2.4.2.8 from EC); ribose-phosphate pyrophosphokinase (2.7.6.1 from EC); amidophosphoribosyltransferase (2.4.2.14 from EC); orotate phosphoribosyltransferase (2.4.2.10 from EC);uracil phosphoribosyltransferase (2.4.2.9 from EC); and xanthine-guanine phosphoribosyltransferase (2.4.2.22 from EC). Not all PRT proteins are enzymes. For example, in some bacteria PRT proteins regulate the expression of purine and pyrimidine synthetic genes. Members of PRT are defined by the protein fold and by a short 13-residue sequence motif, The motif consists of four hydrophobic amino acids, two acidic amino acids and seven amino acids of variable character, usually including glycine and threonine. The motif has been predicted to be a PRPP-binding site in advance of structural information [, ]. Apart of this motif, different PRT proteins have a low level of sequence identity, less than 15%. The PRT sequence motif is only found in PRTases from the nucleotide synthesis and salvage pathways. Other PRTases, from the tryptophan, histidine and nicotinamide synthetic and salvage pathways, lack the PRT sequence motif and appear to be unrelated to each other and unrelated to the PRT family.; GO: 0009116 nucleoside metabolic process; PDB: 2JBH_A 1Y0B_D 2FXV_B 1GPH_1 1AO0_D 1ORO_B 1VCH_C 2WNS_A 2PRZ_B 2PS1_A ....
Probab=98.70 E-value=6.9e-08 Score=82.36 Aligned_cols=87 Identities=20% Similarity=0.218 Sum_probs=65.1
Q ss_pred EEEeeccCchhHHHHHhhcCCceeeEEEEE--------EcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHH
Q 035513 315 GISIIRSGESMENALRACCKGIKIGKILIH--------REGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISL 386 (473)
Q Consensus 315 ~v~ilraG~~~~~~~~~~~p~a~~g~i~~~--------r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~ 386 (473)
+|+|.|+|.++...+.+.+........... ....+.....+...+..++|++|+|+|++++||+|+..+++.
T Consensus 31 ivgi~~~G~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~vliVDDvi~tG~Tl~~~~~~ 110 (125)
T PF00156_consen 31 IVGIPRGGIPLAAALARALGIPLVFVRKRKSYYPGSDKTSREKNNQELFIIDKEDIKGKRVLIVDDVIDTGGTLKEAIEL 110 (125)
T ss_dssp EEEETTTTHHHHHHHHHHHTHEEEEEEEEEEEESEEEEEEEETEEEEEEEEESSSGTTSEEEEEEEEESSSHHHHHHHHH
T ss_pred EEeehhccHHHHHHHHHHhCCCccceeeeecccccchhhhhccCceEEeecccccccceeEEEEeeeEcccHHHHHHHHH
Confidence 888999999999999888875443333211 111122234445556688999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEEEE
Q 035513 387 ILSKGVPESNIIFLNLI 403 (473)
Q Consensus 387 L~~~g~~~~~i~~~~~~ 403 (473)
|++.|+ +.|.+++++
T Consensus 111 L~~~g~--~~v~~~vl~ 125 (125)
T PF00156_consen 111 LKEAGA--KVVGVAVLV 125 (125)
T ss_dssp HHHTTB--SEEEEEEEE
T ss_pred HHhCCC--cEEEEEEEC
Confidence 999998 677777764
No 147
>TIGR01251 ribP_PPkin ribose-phosphate pyrophosphokinase. In some systems, close homologs lacking enzymatic activity exist and perform regulatory functions. The model is designated subfamily rather than equivalog for this reason.
Probab=98.69 E-value=2.4e-07 Score=91.71 Aligned_cols=108 Identities=19% Similarity=0.216 Sum_probs=85.6
Q ss_pred eeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 312 RLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
+.++|++..+|..+...+.+.+. ++++.+.-.|...+. ......++.+++|++|+|+|||++||+|+..+++.|++.|
T Consensus 160 ~~viv~pd~g~~~~A~~lA~~Lg-~~~~~i~k~r~~~~~-~~~~~~~~~~v~g~~vliVDDii~tG~Tl~~a~~~l~~~g 237 (308)
T TIGR01251 160 NPVVVSPDAGGVERAKKVADALG-CPLAIIDKRRISATN-EVEVMNLVGDVEGKDVVIVDDIIDTGGTIAKAAEILKSAG 237 (308)
T ss_pred CCEEEEECCchHHHHHHHHHHhC-CCEEEEEEEecCCCC-EEEEEecccccCCCEEEEEccccCCHHHHHHHHHHHHhcC
Confidence 46788888899999999888875 676666666653222 3445677888999999999999999999999999999999
Q ss_pred CCCCcEEEEEE--EeCHHHHHHHHHhCCCcEEEE
Q 035513 392 VPESNIIFLNL--IAAPQGIHAICKRFPKIKIVT 423 (473)
Q Consensus 392 ~~~~~i~~~~~--~~~~~g~~~~~~~~p~v~i~~ 423 (473)
+ ++|++++. +.++++++++.++..+--++|
T Consensus 238 a--~~v~~~~th~v~~~~a~~~l~~~~~~~iv~t 269 (308)
T TIGR01251 238 A--KRVIAAATHGVFSGPAIERIANAGVEEVIVT 269 (308)
T ss_pred C--CEEEEEEEeeecCcHHHHHHHhCCCCEEEEe
Confidence 9 68988884 479999999998754433333
No 148
>PRK03846 adenylylsulfate kinase; Provisional
Probab=98.68 E-value=5.9e-08 Score=90.01 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=35.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFY 70 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~ 70 (473)
...++.+|+|+|.+||||||+++.|+..+.. .+..+++.|++.
T Consensus 20 ~~~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~ 64 (198)
T PRK03846 20 HGHKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVR 64 (198)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHH
Confidence 3457889999999999999999999998743 346778777765
No 149
>PRK14529 adenylate kinase; Provisional
Probab=98.68 E-value=1.1e-07 Score=89.19 Aligned_cols=117 Identities=14% Similarity=0.079 Sum_probs=67.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceecc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIP 113 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p 113 (473)
.|.|.|++||||||+|+.|++.++ +.++|..++++..... ..+. ...+. .-+.+|..+...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~---~~~is~gdllr~~i~~----------~t~l---g~~i~---~~i~~G~lvpde 62 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYD---LAHIESGAIFREHIGG----------GTEL---GKKAK---EYIDRGDLVPDD 62 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHC---CCCcccchhhhhhccC----------CChH---HHHHH---HHHhccCcchHH
Confidence 488899999999999999999998 8889888887542110 0000 00011 111222222111
Q ss_pred ccccccccccccccccCCCcEEEEecccccCChh--hh-------hccCeEEEEecChhHHHHHhhhcc
Q 035513 114 DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--VR-------DLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 114 ~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~--~~-------~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
........++.. .. ..-+|+||..--.++. +. ...|.+|+|++|.++..+|+..|.
T Consensus 63 i~~~lv~~~l~~---~~-~~g~iLDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~~~~~~l~~Rl~~R~ 127 (223)
T PRK14529 63 ITIPMILETLKQ---DG-KNGWLLDGFPRNKVQAEKLWEALQKEGMKLDYVIEILLPREVAKNRIMGRR 127 (223)
T ss_pred HHHHHHHHHHhc---cC-CCcEEEeCCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHhhCCc
Confidence 110001111111 11 4568999966433221 11 246899999999999999999883
No 150
>PRK13975 thymidylate kinase; Provisional
Probab=98.67 E-value=3.8e-08 Score=90.98 Aligned_cols=26 Identities=31% Similarity=0.362 Sum_probs=24.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|+|.|++||||||+++.|++.++
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~ 27 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLN 27 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 36899999999999999999999997
No 151
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=98.67 E-value=6.6e-09 Score=95.92 Aligned_cols=37 Identities=16% Similarity=0.256 Sum_probs=30.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.+.+|+|+|.|||||||+|+.|++.++ +.++...|+.
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~---~~~~~~~D~~ 38 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRA---IDIVLSGDYL 38 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcC---CeEEehhHHH
Confidence 457999999999999999999999986 5555555544
No 152
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=98.66 E-value=1.4e-07 Score=86.45 Aligned_cols=174 Identities=17% Similarity=0.148 Sum_probs=88.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
+.+|+|.|||||||+|+++.|.+.++. ....+.++....+.-. .....|.|-..+ ++...+..|+-+
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~~~~TtR~~r~~e----~~g~dy~fvs~~--------ef~~~i~~g~fv 69 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPGE----VNGVDYHFVSRE--------EFEDDIKSGLFL 69 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEeeeeecCCCCCCCC----cCCceEEECCHH--------HHHHHHHcCCeE
Confidence 468999999999999999999988642 1122222222221110 011223343222 233344555555
Q ss_pred ecccccccccccccc--ccccCCCcEEEEecccccCChhhhh-ccC-eEEEEec-ChhHHHHHhhhccccccCCChHHHH
Q 035513 111 SIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRD-LMS-MKIFVDT-DSDVRLSRRIQRDTVERGRDIEDVL 185 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~-~~D-l~I~L~~-~~e~~~~R~~~R~~~~~~~~~~~~~ 185 (473)
.+..+....+..... .........+++|+-.... ..+.. ..+ .+||+.+ +.+...+|+.+|.. .+.+.+.
T Consensus 70 e~~~~~g~~YGt~~~~i~~~~~~~~~~ild~~~~~~-~~l~~~~~~~~vIfi~~~s~~~l~~rl~~R~~----~~~~~i~ 144 (184)
T smart00072 70 EWGEYSGNYYGTSKETIRQVAEQGKHCLLDIDPQGV-KQLRKAQLYPIVIFIAPPSSEELERRLRGRGT----ETAERIQ 144 (184)
T ss_pred EEEEEcCcCcccCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEeCcCHHHHHHHHHhcCC----CCHHHHH
Confidence 544443322221111 1112345677877644332 22222 223 7999985 45567777776632 1333333
Q ss_pred HHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.++..... ... . ....|.+|.|+ +.+.+.+++.+.|.
T Consensus 145 ~rl~~a~~-~~~----~-~~~fd~~I~n~-~l~~~~~~l~~~i~ 181 (184)
T smart00072 145 KRLAAAQK-EAQ----E-YHLFDYVIVND-DLEDAYEELKEILE 181 (184)
T ss_pred HHHHHHHH-HHh----h-hccCCEEEECc-CHHHHHHHHHHHHH
Confidence 33332111 111 1 24589999887 66666666665553
No 153
>PLN02238 hypoxanthine phosphoribosyltransferase
Probab=98.64 E-value=2.8e-07 Score=84.52 Aligned_cols=143 Identities=15% Similarity=0.185 Sum_probs=97.8
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC----CceeeEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK----GIKIGKI 341 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p----~a~~g~i 341 (473)
+..++...+.+|+..+... .. ..+.++|.|+|+|.++...+.+.+. ...+.++
T Consensus 13 s~~~I~~~i~~lA~~I~~~----~~-------------------~~~~vivgi~~Gg~~fa~~L~~~L~~~~~~~~i~fi 69 (189)
T PLN02238 13 TAEDISARVAELAAQIASD----YA-------------------GKSPVVLGVATGAFMFLADLVRAIQPLPRGLTVDFI 69 (189)
T ss_pred CHHHHHHHHHHHHHHHHHH----cC-------------------CCCcEEEEEccCCHHHHHHHHHHhCccCCCeEEEEE
Confidence 4456777777776666432 11 1236889999999999988888876 3556677
Q ss_pred EEEEcCC-C---Cc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhC
Q 035513 342 LIHREGN-S---GR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRF 416 (473)
Q Consensus 342 ~~~r~~~-~---~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~ 416 (473)
-.++-.. + +. .+....++.+++|++|+|+|+++.||.|+..+++.|+++|+ +.|.+++++..+..-+.=.+.+
T Consensus 70 ~~~sy~~~~~~~g~~~i~~~~~~~~v~gk~VliVDDIidTG~Tl~~~~~~l~~~g~--~~v~~avL~dK~~~r~~~~~~~ 147 (189)
T PLN02238 70 RASSYGGGTESSGVAKVSGADLKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGA--ASVSVCALLDKRARRKVKYELV 147 (189)
T ss_pred EeeecCCCccccCceeEecCCCCCCCCCCEEEEEecccchHHHHHHHHHHHHhCCC--CEEEEEEEEECCccccCCccCC
Confidence 7666432 2 11 23333566789999999999999999999999999999998 7899999998876433111122
Q ss_pred CCcEEEEEeecCCCCCCccee
Q 035513 417 PKIKIVTSEIDSSIDEHACVI 437 (473)
Q Consensus 417 p~v~i~~~~id~~l~~~~~i~ 437 (473)
.|+.=|+|--=+ +.|+|
T Consensus 148 ~~~~d~~G~~ip----d~fvv 164 (189)
T PLN02238 148 GDGKEYVGFECP----DEFVV 164 (189)
T ss_pred CCCceEEEEecC----CceEE
Confidence 244556655222 45655
No 154
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.62 E-value=1.1e-07 Score=83.09 Aligned_cols=34 Identities=32% Similarity=0.515 Sum_probs=31.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+|.++|++||||||+++.|++.++ +.+++.|.+.
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~---~~~i~~D~~~ 34 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLG---AVVISQDEIR 34 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHST---EEEEEHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCC---CEEEeHHHHH
Confidence 589999999999999999999987 8999998865
No 155
>COG3954 PrkB Phosphoribulokinase [Energy production and conversion]
Probab=98.62 E-value=4.6e-07 Score=80.60 Aligned_cols=178 Identities=22% Similarity=0.232 Sum_probs=120.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHH-------HhhccCccCCCCccccHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEK-------LQNLHDYNFDHPDAFDTELLLSDM 101 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~-------~~~~~~~~f~~~~~~d~~~l~~~l 101 (473)
+..+|+|+|.||+|-||....+.+.++. .....+..|.|++--..+. ++....+.+-.|++.|+..|.+.+
T Consensus 4 KhPiIavTGSSGAGTTTts~aFrKiF~~~~I~aa~iEGDsFHR~tRpeMd~~Irkar~~GrhisyFgpeANdf~~LE~~f 83 (289)
T COG3954 4 KHPVIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKARDAGRHISYFGPEANDFGLLEQTF 83 (289)
T ss_pred CCceEEEecCCCCCcccHHHHHHHHHHhcCccHhhhccccccccCchhHHHHHHHHHHcCCcceecCccccchHHHHHHH
Confidence 4568999999999999999999887764 3356788899886332221 222233444468999999999999
Q ss_pred HHhhcCCceeccccccccccc----------cccccccCCCcEEEEecccccCCh---hhhhccCeEEEEecChhHHHHH
Q 035513 102 EKLKHGQAVSIPDYDFKSHKR----------KQQSRLINPSDVFILEGILVLHDP---RVRDLMSMKIFVDTDSDVRLSR 168 (473)
Q Consensus 102 ~~l~~g~~i~~p~~~~~~~~~----------~~~~~~~~~~~viIlEG~~~l~~~---~~~~~~Dl~I~L~~~~e~~~~R 168 (473)
.++.....-....|-+...+. ..++..-.+.+++..||.+...-. .+...+|+.|-+..-....+..
T Consensus 84 ~eYg~~G~Gr~R~YlHt~dEAvp~nq~PGTFTpW~~lpe~sDvLFYEGLHGgvVt~~~nvAqHvDlliGvVPivNLEWIQ 163 (289)
T COG3954 84 IEYGQSGKGRSRKYLHTYDEAVPWNQVPGTFTPWQPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQ 163 (289)
T ss_pred HHhcccCCcchhhhhhchhhcCccCCCCCCCCCcccCCCccceeeeeccccceecCcccHhhhhceeeeeeeEeeHHHHH
Confidence 888764433333332222222 122222345899999998765332 4567788877776544444445
Q ss_pred hhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccE
Q 035513 169 RIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADI 209 (473)
Q Consensus 169 ~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~ 209 (473)
.+.||..+||.+.+.+.+..... .+.|-.||.|+-...++
T Consensus 164 K~~RDt~~RGhSrEAVmDsivRs-MdDYinyItPQFSrThI 203 (289)
T COG3954 164 KLIRDTSERGHSREAVMDSVVRS-MDDYINYITPQFSRTHI 203 (289)
T ss_pred HHHhcccccCccHHHHHHHHHHh-hhhHHhhcCcccccccc
Confidence 66799999999999999987765 46888888887655554
No 156
>COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism]
Probab=98.61 E-value=3.5e-08 Score=93.78 Aligned_cols=60 Identities=18% Similarity=0.279 Sum_probs=50.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~ 68 (473)
+|+++|++. ++..++++ |++.+++.+++|.||+|||||||.+.|+..++. .|...++..+
T Consensus 2 ~L~~~~ls~~y~~~~il~~l-----s~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~ 65 (258)
T COG1120 2 MLEVENLSFGYGGKPILDDL-----SFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKD 65 (258)
T ss_pred eeEEEEEEEEECCeeEEecc-----eEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCc
Confidence 689999966 67799999 999999999999999999999999999998763 4555555443
No 157
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.61 E-value=2.2e-07 Score=86.67 Aligned_cols=157 Identities=19% Similarity=0.273 Sum_probs=94.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHHh
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQ 79 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~~ 79 (473)
+|+++|++| ....++++ |++.+.+.++++.|+|||||||+.+.+.+.+.. .|-..++..+.- ++......
T Consensus 1 MI~~~nvsk~y~~~~av~~v-----~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~-~~d~~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGNKKAVDDV-----NLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDIS-DLDPVELR 74 (309)
T ss_pred CceeeeeehhcCCceeeeee-----eEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecc-cCCHHHHH
Confidence 589999988 67799999 999999999999999999999999999887653 445555443322 22222111
Q ss_pred hccCcc------CCC------------CccccHHHHHHHHHHhhcCCce----ecccc----ccccccccccccc-cCCC
Q 035513 80 NLHDYN------FDH------------PDAFDTELLLSDMEKLKHGQAV----SIPDY----DFKSHKRKQQSRL-INPS 132 (473)
Q Consensus 80 ~~~~~~------f~~------------~~~~d~~~l~~~l~~l~~g~~i----~~p~~----~~~~~~~~~~~~~-~~~~ 132 (473)
..-.|. |-+ ...|+.+...+...++..--.. ....| +....+|+.-.+. ..++
T Consensus 75 r~IGYviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP 154 (309)
T COG1125 75 RKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARALAADP 154 (309)
T ss_pred HhhhhhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCC
Confidence 111111 111 1245666666655555442111 11233 3333344444443 4578
Q ss_pred cEEEEecccccCChhhhhcc------------CeEEEEecChhHHH
Q 035513 133 DVFILEGILVLHDPRVRDLM------------SMKIFVDTDSDVRL 166 (473)
Q Consensus 133 ~viIlEG~~~l~~~~~~~~~------------Dl~I~L~~~~e~~~ 166 (473)
++++.|.+|...+|-.+... --+||+.=|.++.+
T Consensus 155 ~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~ 200 (309)
T COG1125 155 PILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEAL 200 (309)
T ss_pred CeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHH
Confidence 99999999998887432211 24566666655543
No 158
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.61 E-value=1.2e-07 Score=89.63 Aligned_cols=141 Identities=18% Similarity=0.214 Sum_probs=89.1
Q ss_pred Cccceeeccccc--c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC----------------
Q 035513 1 METVIELADDFA--D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QR---------------- 60 (473)
Q Consensus 1 m~~~i~~~~~~~--~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~---------------- 60 (473)
|+.+|+++|++. + ...|+++ +++..++.+++|.||.|||||||.+.+...+.+ .|
T Consensus 1 ~~~~i~v~nl~v~y~~~~vl~~i-----~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~ 75 (254)
T COG1121 1 MMPMIEVENLTVSYGNRPVLEDI-----SLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRL 75 (254)
T ss_pred CCcEEEEeeeEEEECCEeeeecc-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCC
Confidence 667999999965 4 3699999 999999999999999999999999999885542 22
Q ss_pred -EEEEecC---CCCCCCCHHHHhhccCc----cCCCCccccHHHHHHHHHHhhcCCcee--ccccccccccccccccc-c
Q 035513 61 -VVLVNQD---SFYHSLTDEKLQNLHDY----NFDHPDAFDTELLLSDMEKLKHGQAVS--IPDYDFKSHKRKQQSRL-I 129 (473)
Q Consensus 61 -~~~is~D---~~~~~~~~~~~~~~~~~----~f~~~~~~d~~~l~~~l~~l~~g~~i~--~p~~~~~~~~~~~~~~~-~ 129 (473)
+.++++- ++-..++....-..+.+ .|..+...|.+...+.|+.+.-..-.. +-..+....+|+-.++. +
T Consensus 76 ~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 76 RIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred eEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 2333321 11112233332222221 244455666777777777654432211 22334444455544444 5
Q ss_pred CCCcEEEEecccccCCh
Q 035513 130 NPSDVFILEGILVLHDP 146 (473)
Q Consensus 130 ~~~~viIlEG~~~l~~~ 146 (473)
.+++++++|.++...++
T Consensus 156 ~~p~lllLDEP~~gvD~ 172 (254)
T COG1121 156 QNPDLLLLDEPFTGVDV 172 (254)
T ss_pred cCCCEEEecCCcccCCH
Confidence 68999999988776655
No 159
>PRK07933 thymidylate kinase; Validated
Probab=98.60 E-value=2.6e-07 Score=86.57 Aligned_cols=32 Identities=19% Similarity=0.355 Sum_probs=27.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i 64 (473)
++|+|.|..||||||+++.|++.+...+..++
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L~~~g~~v~ 32 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAALEARGRSVA 32 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEE
Confidence 37999999999999999999999976554444
No 160
>PRK00300 gmk guanylate kinase; Provisional
Probab=98.59 E-value=2.1e-07 Score=86.72 Aligned_cols=30 Identities=20% Similarity=0.406 Sum_probs=26.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++++.+|+|.|+|||||||+++.|++.++
T Consensus 1 ~~~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 1 MMRRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 355678999999999999999999999865
No 161
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.58 E-value=2.9e-07 Score=84.23 Aligned_cols=44 Identities=25% Similarity=0.406 Sum_probs=35.1
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCC
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFY 70 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~ 70 (473)
.+.+++.+|+|+|.+||||||+++.|+..+...+ +.+++.|.+.
T Consensus 13 ~~~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 13 LNGHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred HhCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3456788999999999999999999999875333 5677777654
No 162
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.57 E-value=3.5e-08 Score=87.32 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=63.0
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceeccccc
Q 035513 37 VAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYD 116 (473)
Q Consensus 37 I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~ 116 (473)
|.|+|||||||+|+.|+++++ +.+|+.+++.+.... . ++ +.-.+.-..+.+|+.+.....-
T Consensus 1 i~G~PgsGK~t~~~~la~~~~---~~~is~~~llr~~~~----~---------~s---~~g~~i~~~l~~g~~vp~~~v~ 61 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYG---LVHISVGDLLREEIK----S---------DS---ELGKQIQEYLDNGELVPDELVI 61 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHT---SEEEEHHHHHHHHHH----T---------TS---HHHHHHHHHHHTTSS--HHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcC---cceechHHHHHHHHh----h---------hh---HHHHHHHHHHHhhccchHHHHH
Confidence 689999999999999999997 999998877632110 0 00 0011111223334333211111
Q ss_pred cccccccccccccCCCcEEEEecccccCCh--hh-------hhccCeEEEEecChhHHHHHhhh
Q 035513 117 FKSHKRKQQSRLINPSDVFILEGILVLHDP--RV-------RDLMSMKIFVDTDSDVRLSRRIQ 171 (473)
Q Consensus 117 ~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~-------~~~~Dl~I~L~~~~e~~~~R~~~ 171 (473)
.-...++... ....-+|+||.+.-.++ .+ ....+.+|++++|.+.+.+|+..
T Consensus 62 ~ll~~~l~~~---~~~~g~ildGfPrt~~Qa~~l~~~~~~~~~~~~~vi~L~~~~~~~~~R~~~ 122 (151)
T PF00406_consen 62 ELLKERLEQP---PCNRGFILDGFPRTLEQAEALEEILEEEGIPPDLVIFLDCPDETLIERLSQ 122 (151)
T ss_dssp HHHHHHHHSG---GTTTEEEEESB-SSHHHHHHHHHHHHHTTSEESEEEEEE--HHHHHHHHHT
T ss_pred HHHHHHHhhh---cccceeeeeeccccHHHHHHHHHHHhhcccchheeeccccchhhhhhhccc
Confidence 1111111111 23567899997653322 11 23357999999999999999876
No 163
>COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms]
Probab=98.56 E-value=1.2e-07 Score=93.21 Aligned_cols=143 Identities=17% Similarity=0.187 Sum_probs=90.0
Q ss_pred Cccceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCE--------------
Q 035513 1 METVIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRV-------------- 61 (473)
Q Consensus 1 m~~~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~-------------- 61 (473)
|..++++.|+++ + ...|+++ ++..+.+.++++.|++||||||+.+.|+..+.+ .|-
T Consensus 1 ~~~~i~~~~l~k~~~~~~~~l~~v-----s~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~~~ 75 (293)
T COG1131 1 MIEVIEVRNLTKKYGGDKTALDGV-----SFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEPAK 75 (293)
T ss_pred CCceeeecceEEEeCCCCEEEece-----eEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCHHH
Confidence 556899999988 4 5799999 999999999999999999999999999987653 222
Q ss_pred -----EEEec-CCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC--ceeccccccccccccccccc-cCCC
Q 035513 62 -----VLVNQ-DSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ--AVSIPDYDFKSHKRKQQSRL-INPS 132 (473)
Q Consensus 62 -----~~is~-D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~--~i~~p~~~~~~~~~~~~~~~-~~~~ 132 (473)
.++.. +.+|..++..+.-.+-...+..+...+.+...+.++.+.-.. ......|+...++++.-+.. +.++
T Consensus 76 ~~~~igy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~lS~G~kqrl~ia~aL~~~P 155 (293)
T COG1131 76 VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDKANKKVRTLSGGMKQRLSIALALLHDP 155 (293)
T ss_pred HHhheEEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchhhCcchhhcCHHHHHHHHHHHHHhcCC
Confidence 22222 223444443332111111111111233344445555444332 23344566666666654443 5678
Q ss_pred cEEEEecccccCChhh
Q 035513 133 DVFILEGILVLHDPRV 148 (473)
Q Consensus 133 ~viIlEG~~~l~~~~~ 148 (473)
+++++|.+....++..
T Consensus 156 ~lliLDEPt~GLDp~~ 171 (293)
T COG1131 156 ELLILDEPTSGLDPES 171 (293)
T ss_pred CEEEECCCCcCCCHHH
Confidence 9999999888888743
No 164
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=98.56 E-value=4.8e-07 Score=87.59 Aligned_cols=197 Identities=19% Similarity=0.266 Sum_probs=89.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
|.+|.|+|.|||||||+|+.|++.+... .+.+++.|++. + .... |.+ ..........+....
T Consensus 1 MpLiil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~--~------~~~~--y~~--~~~Ek~~R~~l~s~v---- 64 (270)
T PF08433_consen 1 MPLIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG--I------DRND--YAD--SKKEKEARGSLKSAV---- 64 (270)
T ss_dssp E-EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---------TTSS--S----GGGHHHHHHHHHHHH----
T ss_pred CEEEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc--c------chhh--hhc--hhhhHHHHHHHHHHH----
Confidence 3589999999999999999999987643 35556543332 0 0001 111 111111111111100
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCChhhh-------h---ccCeEEEEecChhHHHHHhhhccccccCC
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVR-------D---LMSMKIFVDTDSDVRLSRRIQRDTVERGR 179 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~-------~---~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~ 179 (473)
.+.+....+||+|+..-+ ..++ + .--.+||++++.+.+++|-.+|...+ +
T Consensus 65 ----------------~r~ls~~~iVI~Dd~nYi--Kg~RYelyclAr~~~~~~c~i~~~~~~e~~~~~N~~R~~~~--~ 124 (270)
T PF08433_consen 65 ----------------ERALSKDTIVILDDNNYI--KGMRYELYCLARAYGTTFCVIYCDCPLETCLQRNSKRPEPE--R 124 (270)
T ss_dssp ----------------HHHHTT-SEEEE-S---S--HHHHHHHHHHHHHTT-EEEEEEEE--HHHHHHHHHHTT-S----
T ss_pred ----------------HHhhccCeEEEEeCCchH--HHHHHHHHHHHHHcCCCEEEEEECCCHHHHHHhhhccCCCC--C
Confidence 011244589999986632 2221 1 11368999999999999998885322 2
Q ss_pred ChHHHHHH-HHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccccccccccccceeeccccceeeeeee
Q 035513 180 DIEDVLDQ-YARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMHT 258 (473)
Q Consensus 180 ~~~~~~~~-~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~~~l~~~~~~v~v~~~~~~~~~~~t 258 (473)
-.+++++. ....+.|.-.. .+...-++++.. +.+..++.+.+.|. ..+. ..++.-...
T Consensus 125 ~~~e~i~~m~~RfE~P~~~n----rWD~plf~i~~~-~~~~~~~~I~~~l~---~~~~---~~pn~~t~~---------- 183 (270)
T PF08433_consen 125 YPEETIDDMIQRFEEPDPKN----RWDSPLFTIDSS-DEELPLEEIWNALF---ENKP---LPPNQATQS---------- 183 (270)
T ss_dssp S-HHHHHHHHHH---TTSS-----GGGS-SEEEE-T-TS---HHHHHHHHH---HHHT---S--SSSTT-----------
T ss_pred CCHHHHHHHHHHhcCCCCCC----CccCCeEEEecC-CCCCCHHHHHHHHH---hcCC---CCCCccccC----------
Confidence 34444443 33333343211 134566777643 33444566665551 1111 111221111
Q ss_pred eeecCCCCchhhHHHHHHHHHHHHHHHHCCC
Q 035513 259 LIRDVTTTTHDFVFYADRLIRLVVEHGLGHL 289 (473)
Q Consensus 259 ~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l 289 (473)
+......|.+-+|...+-++.+++...
T Consensus 184 ----~~~~~~n~lh~lD~~tr~iv~~il~~~ 210 (270)
T PF08433_consen 184 ----KPLSSTNFLHELDKITREIVSEILKAQ 210 (270)
T ss_dssp ----------HHHHHHHHHHHHHHHHHHH--
T ss_pred ----CCCCCCcHHHHHHHHHHHHHHHHHHhh
Confidence 123455899999999998888888854
No 165
>COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.55 E-value=2.9e-07 Score=85.02 Aligned_cols=50 Identities=16% Similarity=0.266 Sum_probs=46.0
Q ss_pred cceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++|+++|+++ +.+.|+++ +...+++..|+|.|+||||||||.+.|.....
T Consensus 2 ~~i~~~nl~k~yp~~~~aL~~V-----nl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d 55 (258)
T COG3638 2 MMIEVKNLSKTYPGGHQALKDV-----NLEINQGEMVAIIGPSGAGKSTLLRSLNGLVD 55 (258)
T ss_pred ceEEEeeeeeecCCCceeeeeE-----eEEeCCCcEEEEECCCCCcHHHHHHHHhcccC
Confidence 5899999977 67899999 99999999999999999999999999988554
No 166
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=98.55 E-value=1.3e-07 Score=85.19 Aligned_cols=162 Identities=14% Similarity=0.187 Sum_probs=78.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCC--CCccccHHHHHHHHHHhhcCCce
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFD--HPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~--~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
.+|.+.|+|.|||||+|+.|++.+.. .+.+++.|.|...+..........+.+. .++. -..+...+..+..+
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~-p~~~l~~D~f~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~~~--- 75 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPE-PWLHLSVDTFVDMMPPGRYRPGDGLEPAGDRPDG--GPLFRRLYAAMHAA--- 75 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS--EEEEEHHHHHHHS-GGGGTSTTSEEEETTSEEE---HHHHHHHHHHHHH---
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcC-CeEEEecChHHhhcCcccccCCccccccccCCch--hHHHHHHHHHHHHH---
Confidence 58999999999999999999999863 4788999998854443322211111111 1110 11111222211110
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCC---hhhhhc---cC-eEEEEecChhHHHHHhhhccccccCCChHH
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD---PRVRDL---MS-MKIFVDTDSDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~---~~~~~~---~D-l~I~L~~~~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
+ ........-+|+|..+.... ..+++. .+ +.|-|.||.++..+|-..|..+..| .
T Consensus 76 ------------i--aa~a~aG~~VIvD~v~~~~~~l~d~l~~~L~~~~vl~VgV~Cpleil~~RE~~RgDR~~G----~ 137 (174)
T PF07931_consen 76 ------------I--AAMARAGNNVIVDDVFLGPRWLQDCLRRLLAGLPVLFVGVRCPLEILERRERARGDRPIG----L 137 (174)
T ss_dssp ------------H--HHHHHTT-EEEEEE--TTTHHHHHHHHHHHTTS-EEEEEEE--HHHHHHHHHHHTSSSTT----H
T ss_pred ------------H--HHHHhCCCCEEEecCccCcHHHHHHHHHHhCCCceEEEEEECCHHHHHHHHHhcCCcchH----H
Confidence 0 00012234455554443221 122222 23 6788899999988888888543333 2
Q ss_pred HHHHHHhhcccchhhhcCCccccccEecccCCC-chhhhhhhhhee
Q 035513 184 VLDQYARFVKPSFEEFILPSKKYADIIIPRGGD-NDVAIDLIVQHI 228 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~-~~~~i~~i~~~I 228 (473)
...|+.. .+ .....|+.+|.+.. .++..+.+.+++
T Consensus 138 a~~q~~~-Vh---------~~~~YDleVDTs~~sp~ecA~~I~~~~ 173 (174)
T PF07931_consen 138 AAWQAEH-VH---------EGGRYDLEVDTSATSPEECAREILARL 173 (174)
T ss_dssp HHHHTTG-GG---------TT---SEEEETTSS-HHHHHHHHHTT-
T ss_pred HHHHHhh-cc---------cCCCCCEEEECCCCCHHHHHHHHHHHh
Confidence 2223321 11 02347899987743 345555655543
No 167
>PLN02842 nucleotide kinase
Probab=98.54 E-value=1.5e-07 Score=97.45 Aligned_cols=32 Identities=28% Similarity=0.646 Sum_probs=29.3
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 37 VAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 37 I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
|.|++||||||+|+.|++.++ +.+++.+++++
T Consensus 2 I~G~PGSGKSTqa~~Lak~lg---~~hIs~gdLLR 33 (505)
T PLN02842 2 ISGAPASGKGTQCELIVHKFG---LVHISTGDLLR 33 (505)
T ss_pred eeCCCCCCHHHHHHHHHHHhC---CCEEEccHHHH
Confidence 789999999999999999997 89999888774
No 168
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=98.54 E-value=5.5e-07 Score=80.49 Aligned_cols=49 Identities=16% Similarity=0.255 Sum_probs=44.5
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|++| +.+.|+++ |....++..+.|+|+|||||||+.+.|.....
T Consensus 1 mI~f~~V~k~Y~~g~~aL~~v-----s~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~ 53 (223)
T COG2884 1 MIRFENVSKAYPGGREALRDV-----SFHIPKGEFVFLTGPSGAGKSTLLKLIYGEER 53 (223)
T ss_pred CeeehhhhhhcCCCchhhhCc-----eEeecCceEEEEECCCCCCHHHHHHHHHhhhc
Confidence 589999988 56699999 99999999999999999999999999987654
No 169
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=98.53 E-value=3e-07 Score=96.41 Aligned_cols=36 Identities=22% Similarity=0.263 Sum_probs=32.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS 72 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~ 72 (473)
.|+|+|++||||||+++.|++.++ +.++++|++.++
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg---~~~id~D~~i~~ 37 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLD---LQFIDMDEEIER 37 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcC---CeEEECcHHHHH
Confidence 589999999999999999999987 999999987643
No 170
>PRK00934 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.53 E-value=1.1e-06 Score=86.08 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=74.6
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCC
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~ 392 (473)
.++|++.++|..+...+.+.+. .+...+.-.|... ..........+++|++|+|+|+|++||+|+..+.+.|+++|+
T Consensus 156 ~vvv~pd~Ga~~~a~~lA~~l~-~~~~~i~k~r~~~--~~~~~~~~~~~v~Gk~VlIVDDIi~TG~Tl~~aa~~Lk~~GA 232 (285)
T PRK00934 156 PLVLAPDKGALELAKEAAEILG-CEYDYLEKTRISP--TEVEIAPKNLDVKGKDVLIVDDIISTGGTMATAIKILKEQGA 232 (285)
T ss_pred CEEEEeCCchHHHHHHHHHHhC-CCEEEEEEEecCC--CeEEEeccccccCCCEEEEEcCccccHHHHHHHHHHHHHCCC
Confidence 4677888899999998888885 4544443333322 222222222368899999999999999999999999999999
Q ss_pred CCCcEEEEEE--EeCHHHHHHHHHh
Q 035513 393 PESNIIFLNL--IAAPQGIHAICKR 415 (473)
Q Consensus 393 ~~~~i~~~~~--~~~~~g~~~~~~~ 415 (473)
++|.++++ +.++.+.+++.+.
T Consensus 233 --~~V~~~~~H~i~~~~a~~~l~~~ 255 (285)
T PRK00934 233 --KKVYVACVHPVLVGDAILKLYNA 255 (285)
T ss_pred --CEEEEEEEeeccCcHHHHHHHhC
Confidence 68888885 7889999999885
No 171
>PRK14738 gmk guanylate kinase; Provisional
Probab=98.53 E-value=4.9e-07 Score=84.35 Aligned_cols=28 Identities=21% Similarity=0.445 Sum_probs=24.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
....+.+|+|+|+||||||||++.|.+.
T Consensus 9 ~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 9 KPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 4456789999999999999999999765
No 172
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=98.52 E-value=4.6e-08 Score=90.25 Aligned_cols=60 Identities=22% Similarity=0.367 Sum_probs=37.5
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCC--ccccccEecccC
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILP--SKKYADIIIPRG 214 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~ad~vI~~~ 214 (473)
..|++||++++++++++|+.+|+.... ......|.+.....|..|... .....-++|+++
T Consensus 124 ~pd~~i~l~~~~~~~~~Ri~~R~r~~e----~~~~~~~~~~l~~~y~~~~~~~~~~~~~~~vid~~ 185 (193)
T cd01673 124 PPDLVIYLDASPETCLKRIKKRGRPEE----QGIPLDYLEDLHEAYEKWFLPQMYEKAPVLIIDAN 185 (193)
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCcHhh----hcCCHHHHHHHHHHHHHHHhhccCCCCCEEEEECC
Confidence 468999999999999999988853111 112234566666677777654 112233455544
No 173
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=98.51 E-value=1.2e-07 Score=86.88 Aligned_cols=175 Identities=19% Similarity=0.224 Sum_probs=83.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ-RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~-~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
+++|+|+||+|||||||++.|.+.++.. +..+-++..-.+.- -.+...|.|-..+. +...+..++-+
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~~~~v~~TTR~~r~~----E~~g~~y~fvs~~~--------f~~~~~~~~fi 69 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKFGRVVSHTTRPPRPG----EVDGVDYHFVSKEE--------FERMIKAGEFI 69 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTEEEEEEEESS-GGTT----S-TTTSEEE--HHH--------HHHHHHTTHEE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcccccccceeecccCCccc----ccCCcceEEEeech--------hhhhhccccEE
Confidence 4678999999999999999999987632 12222222211100 01122344433222 22333445555
Q ss_pred ecccccccccccc-cc-ccccCCCcEEEEecccccCChhhhhc-c-CeEEEEecChhHHHHHhhhccccccCCChHHHHH
Q 035513 111 SIPDYDFKSHKRK-QQ-SRLINPSDVFILEGILVLHDPRVRDL-M-SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLD 186 (473)
Q Consensus 111 ~~p~~~~~~~~~~-~~-~~~~~~~~viIlEG~~~l~~~~~~~~-~-Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~ 186 (473)
.+..|+...+... .. .........++++.-.... ..+... + -..||+.++....++|++++... .+.+.+..
T Consensus 70 e~~~~~g~~YGt~~~~i~~~~~~gk~~il~~~~~g~-~~L~~~~~~~~~IfI~~~s~~~l~~~l~~r~~---~~~~~i~~ 145 (183)
T PF00625_consen 70 EYGEYDGNYYGTSKSAIDKVLEEGKHCILDVDPEGV-KQLKKAGFNPIVIFIKPPSPEVLKRRLRRRGD---ESEEEIEE 145 (183)
T ss_dssp EEEEETTEEEEEEHHHHHHHHHTTTEEEEEETHHHH-HHHHHCTTTEEEEEEEESSHHHHHHHHHTTTH---CHHHHHHH
T ss_pred EEeeecchhhhhccchhhHhhhcCCcEEEEccHHHH-HHHHhcccCceEEEEEccchHHHHHHHhcccc---ccHHHHHH
Confidence 5555543333221 11 1112344555655322111 122221 2 26899988865555555443221 12233333
Q ss_pred HHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 187 QYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 187 ~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+..... ..+.. .+..|.+|.|+ +.+++.+++.+.|+
T Consensus 146 r~~~~~-~~~~~-----~~~fd~vi~n~-~le~~~~~l~~ii~ 181 (183)
T PF00625_consen 146 RLERAE-KEFEH-----YNEFDYVIVND-DLEEAVKELKEIIE 181 (183)
T ss_dssp HHHHHH-HHHGG-----GGGSSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHH-HHHhH-----hhcCCEEEECc-CHHHHHHHHHHHHH
Confidence 322211 11211 12289999877 66666666665554
No 174
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=98.51 E-value=3.8e-07 Score=97.29 Aligned_cols=43 Identities=26% Similarity=0.438 Sum_probs=34.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CC--EEEEecCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QR--VVLVNQDSFY 70 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~--~~~is~D~~~ 70 (473)
..+++.+|+|+|.+||||||+|+.|++.++. .+ +.+++.|.+.
T Consensus 388 r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr 433 (568)
T PRK05537 388 RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVR 433 (568)
T ss_pred ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHH
Confidence 3445789999999999999999999999873 22 5888888664
No 175
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.51 E-value=1.7e-07 Score=92.72 Aligned_cols=37 Identities=27% Similarity=0.277 Sum_probs=32.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.+|.+.|++||||||+|+.|+++++ ++.+++.|++.
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~--~~~~l~~D~~r 38 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP--KAVNVNRDDLR 38 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC--CCEEEeccHHH
Confidence 47899999999999999999999983 38999998865
No 176
>COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.48 E-value=7.1e-07 Score=82.74 Aligned_cols=70 Identities=26% Similarity=0.487 Sum_probs=57.3
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecCCCCCCCCHHH
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQDSFYHSLTDEK 77 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D~~~~~~~~~~ 77 (473)
+.+|+++++.+ ++.+++++ ++...++.+.+|.|+|||||||+.+.+...+. ..|-..+...+ +..++...
T Consensus 6 ~~~I~vr~v~~~fG~~~Ild~v-----~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~-i~~ls~~~ 79 (263)
T COG1127 6 EPLIEVRGVTKSFGDRVILDGV-----DLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGED-IPQLSEEE 79 (263)
T ss_pred cceEEEeeeeeecCCEEEecCc-----eeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcc-hhccCHHH
Confidence 46999999966 67799999 99999999999999999999999999988765 35666776666 33455443
No 177
>PLN02924 thymidylate kinase
Probab=98.47 E-value=1.2e-06 Score=82.37 Aligned_cols=39 Identities=26% Similarity=0.321 Sum_probs=31.7
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEE
Q 035513 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVL 63 (473)
Q Consensus 25 ~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~ 63 (473)
++...+++.+|+|.|..||||||+++.|++.+...+..+
T Consensus 9 ~~~~~~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v 47 (220)
T PLN02924 9 ESSVESRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAA 47 (220)
T ss_pred CCCcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCc
Confidence 344556678999999999999999999999997554443
No 178
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.46 E-value=6e-07 Score=81.09 Aligned_cols=36 Identities=25% Similarity=0.290 Sum_probs=29.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D 67 (473)
+++|.++|.|||||||+|+.|++.+.+....+++..
T Consensus 1 mpLiIlTGyPgsGKTtfakeLak~L~~~i~~vi~l~ 36 (261)
T COG4088 1 MPLIILTGYPGSGKTTFAKELAKELRQEIWRVIHLE 36 (261)
T ss_pred CceEEEecCCCCCchHHHHHHHHHHHHhhhhccccc
Confidence 367999999999999999999999986666665553
No 179
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=98.46 E-value=2.3e-06 Score=76.72 Aligned_cols=30 Identities=23% Similarity=0.408 Sum_probs=27.0
Q ss_pred EcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 38 AGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 38 ~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+|+|||||||+++.|+..++ ..+++.|.++
T Consensus 1 ~G~sGsGKSTla~~la~~l~---~~~~~~d~~~ 30 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLH---AAFLDGDFLH 30 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhC---CeEEeCccCC
Confidence 59999999999999999987 7889998775
No 180
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=98.46 E-value=4.9e-07 Score=89.36 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=48.8
Q ss_pred cceeeccccc--ccc-cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 3 TVIELADDFA--DDL-SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 3 ~~i~~~~~~~--~~~-~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
..|+++|+.| ++. .++++ +.....+..++|.|||||||||+.+.||..... .|-..++
T Consensus 2 ~~i~l~~v~K~yg~~~~l~~i-----~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~ 63 (338)
T COG3839 2 AELELKNVRKSFGSFEVLKDV-----NLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILID 63 (338)
T ss_pred cEEEEeeeEEEcCCceeeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEC
Confidence 5899999988 666 99999 999999999999999999999999999976542 3444443
No 181
>TIGR01090 apt adenine phosphoribosyltransferase. A phylogenetic analysis suggested omitting the bi-directional best hit homologs from the spirochetes from the seed for this model and making only tentative predictions of adenine phosphoribosyltransferase function for this lineage.
Probab=98.45 E-value=1.1e-06 Score=79.23 Aligned_cols=105 Identities=18% Similarity=0.186 Sum_probs=68.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC-C------------CceEEeecCCCCCCCcEEEEEcccccccHHH
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGN-S------------GRQLIYQKLPADISSRHVLLLDPILASGNSA 380 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~-~------------~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~ 380 (473)
++|++.+.|.++...+.+.+. ++ .+.+.+... . ....++.+-+...+|++|+|+|++++||+|+
T Consensus 49 ~ivgi~~~G~~~A~~la~~L~-~~--~~~i~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDIitTG~Tl 125 (169)
T TIGR01090 49 YIVGPEARGFIFGAALAYKLG-VG--FVPVRKPGKLPGETISASYDLEYGKDQLEIHKDAIKPGQRVLIVDDLLATGGTA 125 (169)
T ss_pred EEEeehhccHHHHHHHHHHHC-CC--EEEEEeCCCCCCceeeeEEeeccCceEEEEehhhcCCcCEEEEEeccccchHHH
Confidence 566777888888887777764 33 223333211 1 1112222223345889999999999999999
Q ss_pred HHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEEE
Q 035513 381 VKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTS 424 (473)
Q Consensus 381 ~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~~ 424 (473)
.++++.|++.|+..-.+.+++.+++++|.+.+.+. +.+++.
T Consensus 126 ~~a~~~L~~~Ga~~v~~~~l~~~~~~~g~~~i~~~---~~~~sl 166 (169)
T TIGR01090 126 EATDELIRKLGGEVVEAAFLIELKDLNGRAKLEPN---VPVFSL 166 (169)
T ss_pred HHHHHHHHHcCCEEEEEEEEEEccccChHHHhccC---CceEEE
Confidence 99999999999843333333444556899999874 555543
No 182
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=98.44 E-value=6.4e-07 Score=78.28 Aligned_cols=38 Identities=26% Similarity=0.342 Sum_probs=30.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.+++++|+|-||+||||+.+...+.+- ...+++..++.
T Consensus 3 ~~kvvvitGVpGvGKTTVl~~~~~~l~--~~~ivNyG~~M 40 (189)
T COG2019 3 GRKVVVITGVPGVGKTTVLKIALKELV--KHKIVNYGDLM 40 (189)
T ss_pred CceEEEEEcCCCCChHHHHHHHHHHHh--hceeeeHhHHH
Confidence 378999999999999999999998871 25666665554
No 183
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=98.41 E-value=8.8e-07 Score=77.59 Aligned_cols=138 Identities=16% Similarity=0.179 Sum_probs=82.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~ 78 (473)
.++|++++.+ +...|+++ |++..++..|+|+|||||||||+.+.++..... .|...+...++- .+..+..
T Consensus 2 mlle~kq~~y~a~~a~il~~i-----sl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs-~~~pea~ 75 (223)
T COG4619 2 MLLELKQVGYLAGDAKILNNI-----SLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVS-TLKPEAY 75 (223)
T ss_pred cchHHHHHHhhcCCCeeecce-----eeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCcccc-ccChHHH
Confidence 4788999966 67799999 999999999999999999999999999987642 334444333322 1222110
Q ss_pred -----------hhccCccCCC--------CccccHHHHHHHHHHhhcCCceec---cccccccccccccccc-cCCCcEE
Q 035513 79 -----------QNLHDYNFDH--------PDAFDTELLLSDMEKLKHGQAVSI---PDYDFKSHKRKQQSRL-INPSDVF 135 (473)
Q Consensus 79 -----------~~~~~~~f~~--------~~~~d~~~l~~~l~~l~~g~~i~~---p~~~~~~~~~~~~~~~-~~~~~vi 135 (473)
..+++-..++ ....|.....+.++...-+..+.. -..+....+++...+. ...++++
T Consensus 76 Rq~VsY~~Q~paLfg~tVeDNlifP~~~r~rr~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq~~P~IL 155 (223)
T COG4619 76 RQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQFMPKIL 155 (223)
T ss_pred HHHHHHHHcCccccccchhhccccchHHhccCCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhhcCCceE
Confidence 1111111111 124466666666665554433221 1223333444433332 3468899
Q ss_pred EEecccccCCh
Q 035513 136 ILEGILVLHDP 146 (473)
Q Consensus 136 IlEG~~~l~~~ 146 (473)
++|.+....++
T Consensus 156 LLDE~TsALD~ 166 (223)
T COG4619 156 LLDEITSALDE 166 (223)
T ss_pred EecCchhhcCh
Confidence 99987666554
No 184
>PRK13537 nodulation ABC transporter NodI; Provisional
Probab=98.39 E-value=5.4e-07 Score=89.33 Aligned_cols=52 Identities=19% Similarity=0.287 Sum_probs=46.8
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ ....|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 4 ~~~~i~i~~l~k~~~~~~~l~~v-----sl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~ 58 (306)
T PRK13537 4 SVAPIDFRNVEKRYGDKLVVDGL-----SFHVQRGECFGLLGPNGAGKTTTLRMLLGLTH 58 (306)
T ss_pred CCceEEEEeEEEEECCeEEEecc-----eEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467999999977 45699999 99999999999999999999999999998764
No 185
>PRK02304 adenine phosphoribosyltransferase; Provisional
Probab=98.36 E-value=2.9e-06 Score=77.02 Aligned_cols=96 Identities=22% Similarity=0.200 Sum_probs=68.2
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC-------------CceEEeecCCCCCCCcEEEEEcccccccHH
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGNS-------------GRQLIYQKLPADISSRHVLLLDPILASGNS 379 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~-------------~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t 379 (473)
-++|++..+|.++...+.+.+. .+ .+.+.+.... .+...+..-...++|++|+|+|++++||+|
T Consensus 53 d~Ivgv~~~Gi~~a~~la~~l~-~p--~~~~rk~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~g~~VLIVDDivtTG~T 129 (175)
T PRK02304 53 DKIVGIEARGFIFGAALAYKLG-IG--FVPVRKPGKLPRETISESYELEYGTDTLEIHKDAIKPGDRVLIVDDLLATGGT 129 (175)
T ss_pred CEEEEEccchHHHHHHHHHHhC-CC--EEEEEcCCCCCCceEeEEEecccCceEEEEchhhcCCCCEEEEEeCCccccHH
Confidence 3466778899999888888764 33 3334332211 112222222233789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEEeCHH--HHHHHH
Q 035513 380 AVKAISLILSKGVPESNIIFLNLIAAPQ--GIHAIC 413 (473)
Q Consensus 380 ~~~~~~~L~~~g~~~~~i~~~~~~~~~~--g~~~~~ 413 (473)
+.++++.|++.|+ +.+.+++++..++ |.+++.
T Consensus 130 l~~~~~~l~~~Ga--~~v~v~vl~~~~~~~g~~~l~ 163 (175)
T PRK02304 130 LEAAIKLLERLGA--EVVGAAFVIELPDLGGREKLE 163 (175)
T ss_pred HHHHHHHHHHcCC--EEEEEEEEEEcccccchhhcC
Confidence 9999999999998 6788888888776 777776
No 186
>PRK13974 thymidylate kinase; Provisional
Probab=98.35 E-value=3.1e-06 Score=79.37 Aligned_cols=73 Identities=15% Similarity=0.162 Sum_probs=44.4
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
..|++||+++|++++.+|+..|.. ...+.....|.+...+.|..+... ..-.+|+.+.+.++..+++.+.+..
T Consensus 134 ~pd~~i~ld~~~~~~~~R~~~R~d----D~~e~~~~~y~~~v~~~y~~y~~~---~~~~~Ida~~~~eeV~~~I~~~l~~ 206 (212)
T PRK13974 134 SPDLTFFLEISVEESIRRRKNRKP----DRIEAEGIEFLERVAEGFALIAEE---RNWKVISADQSIETISNEIKETLLN 206 (212)
T ss_pred CCCEEEEEeCCHHHHHHHHHhccc----CchhhhhHHHHHHHHHHHHHHHhc---CCEEEEeCCCCHHHHHHHHHHHHHH
Confidence 368999999999999999887731 123333445666677777766221 1233455544444445555555543
No 187
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=98.34 E-value=8.7e-07 Score=86.21 Aligned_cols=39 Identities=28% Similarity=0.459 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.|++|+|+|++||||||+|..|++.++. -.+++.|.+.
T Consensus 90 ~~p~iIlI~G~sgsGKStlA~~La~~l~~--~~vi~~D~~r 128 (301)
T PRK04220 90 KEPIIILIGGASGVGTSTIAFELASRLGI--RSVIGTDSIR 128 (301)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCC--CEEEechHHH
Confidence 46899999999999999999999999972 2478877655
No 188
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=98.33 E-value=3.3e-06 Score=82.42 Aligned_cols=24 Identities=17% Similarity=0.196 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+.+|+|+|++||||||+++.|+.
T Consensus 5 ~~~~i~i~G~~GsGKtt~~~~l~~ 28 (288)
T PRK05416 5 PMRLVIVTGLSGAGKSVALRALED 28 (288)
T ss_pred CceEEEEECCCCCcHHHHHHHHHH
Confidence 346899999999999999999964
No 189
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=98.33 E-value=5.9e-07 Score=83.50 Aligned_cols=59 Identities=15% Similarity=0.329 Sum_probs=48.2
Q ss_pred cceeeccccc---ccc----cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEec
Q 035513 3 TVIELADDFA---DDL----SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQ 66 (473)
Q Consensus 3 ~~i~~~~~~~---~~~----~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~ 66 (473)
++++++|+++ +.. .++++ +....++.++||.|.|||||||+++.|+..... .|-..++.
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~V-----S~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G 68 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNV-----SLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcce-----eEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 5899999966 444 89999 999999999999999999999999999976542 34444444
No 190
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=98.33 E-value=1.6e-07 Score=87.19 Aligned_cols=190 Identities=16% Similarity=0.241 Sum_probs=92.2
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
.++.|.+|.|.|.||.||||+|..||.+++ +..+-..|++++.-..- .+ |+ +...+-......|+.-
T Consensus 85 ~~~~p~IILIGGasGVGkStIA~ElA~rLg---I~~visTD~IREvlR~i---i~------~~-l~PtLh~Ssy~Awkal 151 (299)
T COG2074 85 KMKRPLIILIGGASGVGKSTIAGELARRLG---IRSVISTDSIREVLRKI---IS------PE-LLPTLHTSSYDAWKAL 151 (299)
T ss_pred ccCCCeEEEecCCCCCChhHHHHHHHHHcC---CceeecchHHHHHHHHh---CC------HH-hcchhhHhHHHHHHHh
Confidence 456789999999999999999999999998 54443333433221110 00 00 0000000111111110
Q ss_pred -----Cceeccccccccccc---cc--cccccCCCcEEEEecccccCC---hhhhhccCeEEEEec-ChhHHHHHhhhcc
Q 035513 108 -----QAVSIPDYDFKSHKR---KQ--QSRLINPSDVFILEGILVLHD---PRVRDLMSMKIFVDT-DSDVRLSRRIQRD 173 (473)
Q Consensus 108 -----~~i~~p~~~~~~~~~---~~--~~~~~~~~~viIlEG~~~l~~---~~~~~~~Dl~I~L~~-~~e~~~~R~~~R~ 173 (473)
..-.+..|......- ++ ..++..++.-+|+||.+..+. +.......+..+|.+ +++....|.-.|.
T Consensus 152 r~~~~~~piiaGF~dqa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~~~n~~~~~l~i~dee~Hr~RF~~R~ 231 (299)
T COG2074 152 RDPTDENPIIAGFEDQASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEALGNNVFMFMLYIADEELHRERFYDRI 231 (299)
T ss_pred cCCCCCcchhhhHHHHhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhhccceEEEEEEeCCHHHHHHHHHHHH
Confidence 000001110000000 00 123345677899999876542 222222244555554 5677777877886
Q ss_pred cccc-CCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 174 TVER-GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 174 ~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
.... .+.....++.|+ ..+...+..+...+++---+|+|+ +.+++++.+++.|.+..
T Consensus 232 ~~t~~~rp~~Ryl~yf~-EiR~I~Dyl~~~Are~gVPvI~n~-di~etv~~il~~i~~~~ 289 (299)
T COG2074 232 RYTHASRPGGRYLEYFK-EIRTIHDYLVERAREHGVPVIEND-DIDETVDRILEDIRKRT 289 (299)
T ss_pred HHHhccCchhHHHHHHH-HHHHHHHHHHHHHHhcCCCeeccc-cHHHHHHHHHHHHHHHH
Confidence 5432 223333333222 222122111222233444577766 77788888888776554
No 191
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.33 E-value=9.6e-07 Score=82.36 Aligned_cols=58 Identities=22% Similarity=0.289 Sum_probs=46.7
Q ss_pred ceeeccccc----c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEec
Q 035513 4 VIELADDFA----D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQ 66 (473)
Q Consensus 4 ~i~~~~~~~----~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~ 66 (473)
+|+++|+.+ + ...|+++ +...+++.+++|.||||||||||.+.|.....+ .|...+..
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v-----~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g 66 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDV-----NLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLING 66 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 467889977 1 3589999 999999999999999999999999999876543 34545544
No 192
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=98.32 E-value=9.4e-07 Score=83.74 Aligned_cols=52 Identities=19% Similarity=0.234 Sum_probs=45.3
Q ss_pred Cccceeeccccc--cc-----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--DD-----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~~-----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ +. ..++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~~~~~~l~~~-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 61 (228)
T PRK10584 3 AENIVEVHHLKKSVGQGEHELSILTGV-----ELVVKRGETIALIGESGSGKSTLLAILAGLDD 61 (228)
T ss_pred cCceEEEeeeEEEccCCCcceEEEecc-----EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 457899999976 22 479999 99999999999999999999999999998764
No 193
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.31 E-value=6.7e-06 Score=81.41 Aligned_cols=108 Identities=12% Similarity=0.178 Sum_probs=79.0
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++++|+...+|......+.+.+..+++..+.=+|+..+... -..+..+++|++|+|+|+|+.||+|+.++.+.|+++
T Consensus 166 ~~~vVVsPD~Ga~~rA~~lA~~L~~~~~~~~~K~R~~~~~~~--~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~ 243 (319)
T PRK04923 166 DNLIVVSPDVGGVVRARAVAKRLDDADLAIIDKRRPRANVAT--VMNIIGDVQGKTCVLVDDLVDTAGTLCAAAAALKQR 243 (319)
T ss_pred CCCEEEEECCchHHHHHHHHHHcCCCCEEEeccccCCCCceE--EEecccCCCCCEEEEEecccCchHHHHHHHHHHHHC
Confidence 456788888888899999988886666554444454332222 223445899999999999999999999999999999
Q ss_pred CCCCCcEEEEE--EEeCHHHHHHHHHhCCCc-EEEEE
Q 035513 391 GVPESNIIFLN--LIAAPQGIHAICKRFPKI-KIVTS 424 (473)
Q Consensus 391 g~~~~~i~~~~--~~~~~~g~~~~~~~~p~v-~i~~~ 424 (473)
|+ ++|.+++ -+-+..+.+++.+. .+ +||+.
T Consensus 244 GA--~~V~~~~THgvfs~~a~~~l~~s--~i~~iv~T 276 (319)
T PRK04923 244 GA--LKVVAYITHPVLSGPAVDNINNS--QLDELVVT 276 (319)
T ss_pred CC--CEEEEEEECcccCchHHHHHhhC--CCCEEEEe
Confidence 99 6787777 44567778888653 23 45543
No 194
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.31 E-value=3.1e-07 Score=93.82 Aligned_cols=38 Identities=21% Similarity=0.448 Sum_probs=32.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE-EEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV-LVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~-~is~D~~~ 70 (473)
++|.+|.++|++||||||++..|+..++ +. +++.|.+.
T Consensus 253 k~p~vil~~G~~G~GKSt~a~~LA~~lg---~~~ii~tD~iR 291 (475)
T PRK12337 253 PRPLHVLIGGVSGVGKSVLASALAYRLG---ITRIVSTDAVR 291 (475)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC---CcEEeehhHHH
Confidence 4689999999999999999999999987 44 67887643
No 195
>COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.30 E-value=2.4e-06 Score=77.89 Aligned_cols=86 Identities=20% Similarity=0.281 Sum_probs=60.8
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEEecCCCCCC-
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD------QRVVLVNQDSFYHS- 72 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~------~~~~~is~D~~~~~- 72 (473)
..|+++||.. .++.|+++ ++...+..+.++.|||||||||+.+.|-+...- .|-..++..++|..
T Consensus 6 ~~~~~~~l~~yYg~~~aL~~i-----~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~ 80 (253)
T COG1117 6 PAIEVRDLNLYYGDKHALKDI-----NLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80 (253)
T ss_pred ceeEecceeEEECchhhhccC-----ceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCC
Confidence 5789999944 78899999 999999999999999999999999999765321 23445555566643
Q ss_pred CCHHHHhhccCccCCCCcccc
Q 035513 73 LTDEKLQNLHDYNFDHPDAFD 93 (473)
Q Consensus 73 ~~~~~~~~~~~~~f~~~~~~d 93 (473)
.........-...|..|..|.
T Consensus 81 ~d~~~lRr~vGMVFQkPnPFp 101 (253)
T COG1117 81 VDVVELRRRVGMVFQKPNPFP 101 (253)
T ss_pred CCHHHHHHHheeeccCCCCCC
Confidence 333333333334566665444
No 196
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=98.30 E-value=1.2e-06 Score=83.02 Aligned_cols=122 Identities=16% Similarity=0.218 Sum_probs=77.8
Q ss_pred Cccceeeccccc----c--------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecC
Q 035513 1 METVIELADDFA----D--------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQD 67 (473)
Q Consensus 1 m~~~i~~~~~~~----~--------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D 67 (473)
|+.+++++|+.+ . -..++++ |+..+++.++||.|.|||||||+++.|...+.. .|-.++...
T Consensus 1 ~~~ll~v~~l~k~f~~~~~~~~~~~v~avd~V-----sf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~ 75 (268)
T COG4608 1 MEPLLEVKNLKKYFPVGKGFGKKRYVKAVDGV-----SFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGK 75 (268)
T ss_pred CCceEEEeccEEEEecccccCcccceEEecce-----eEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCc
Confidence 567999999976 2 1567888 999999999999999999999999999987763 445555554
Q ss_pred CCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc--eecc-ccccccccccccccc-cCCCcEEEEeccccc
Q 035513 68 SFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA--VSIP-DYDFKSHKRKQQSRL-INPSDVFILEGILVL 143 (473)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~--i~~p-~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l 143 (473)
++.. +. .....+.+.+.+..+.-... -.+| .++....+|+..++. .-++++++.|.+...
T Consensus 76 ~i~~-~~---------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQRi~IARALal~P~liV~DEpvSa 139 (268)
T COG4608 76 DITK-LS---------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVSA 139 (268)
T ss_pred chhh-cc---------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhhHHHHHHHhhCCcEEEecCchhh
Confidence 4331 11 01111233444444332211 1233 345556666666555 347889999855443
No 197
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.29 E-value=9.9e-07 Score=80.62 Aligned_cols=129 Identities=10% Similarity=0.107 Sum_probs=76.5
Q ss_pred cceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCC-HHHHhh
Q 035513 3 TVIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLT-DEKLQN 80 (473)
Q Consensus 3 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~-~~~~~~ 80 (473)
.+|+++|+++.. .++++ ++..+.+.+++|.|++|||||||.+.|+..+.. .|-..++..+... .. ......
T Consensus 3 ~~l~~~~l~~~~-~l~~v-----s~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~~~~~~~~~ 75 (182)
T cd03215 3 PVLEVRGLSVKG-AVRDV-----SFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTR-RSPRDAIRA 75 (182)
T ss_pred cEEEEeccEEEe-eecce-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCc-cCHHHHHhC
Confidence 478999998865 89999 999999999999999999999999999987652 3444443322211 11 111111
Q ss_pred ccCccCCCCc---cccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 81 LHDYNFDHPD---AFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 81 ~~~~~f~~~~---~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.-.+.|..+. .+......+.+.... .++....+++.-++. +.+++++++|.+....++
T Consensus 76 ~i~~~~q~~~~~~~~~~~t~~e~l~~~~--------~LS~G~~qrl~la~al~~~p~llllDEP~~~LD~ 137 (182)
T cd03215 76 GIAYVPEDRKREGLVLDLSVAENIALSS--------LLSGGNQQKVVLARWLARDPRVLILDEPTRGVDV 137 (182)
T ss_pred CeEEecCCcccCcccCCCcHHHHHHHHh--------hcCHHHHHHHHHHHHHccCCCEEEECCCCcCCCH
Confidence 1223333321 111111222221110 044444555544333 467899999988877665
No 198
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.29 E-value=7.8e-06 Score=81.17 Aligned_cols=101 Identities=13% Similarity=0.159 Sum_probs=72.9
Q ss_pred eeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 312 RLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++++|+..-+|......+.+.+. ++...+.-.|..+......-..+-.+++|++|+|+|+|++||+|+..|.+.|+++|
T Consensus 166 ~~vvVsPd~G~~~~A~~lA~~lg-~~~~~~~k~r~~~~~~~~~~~~~~gdv~Gr~viIVDDIidTG~Tl~~aa~~Lk~~G 244 (320)
T PRK02269 166 DVVVVSPDHGGVTRARKLAQFLK-TPIAIIDKRRSVDKMNTSEVMNIIGNVKGKKCILIDDMIDTAGTICHAADALAEAG 244 (320)
T ss_pred CcEEEEECccHHHHHHHHHHHhC-CCEEEEEecccCCCCceeEEEEeccccCCCEEEEEeeecCcHHHHHHHHHHHHHCC
Confidence 56777888888888888888774 34333333344332211111233347899999999999999999999999999999
Q ss_pred CCCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 392 VPESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 392 ~~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
+ ++|.+++ -+-+..+++++.+.
T Consensus 245 A--~~V~~~~tHglf~~~a~~~l~~~ 268 (320)
T PRK02269 245 A--TEVYASCTHPVLSGPALDNIQKS 268 (320)
T ss_pred C--CEEEEEEECcccCchHHHHHHhC
Confidence 9 6787777 45677888999764
No 199
>PRK13536 nodulation factor exporter subunit NodI; Provisional
Probab=98.26 E-value=1.5e-06 Score=87.19 Aligned_cols=50 Identities=22% Similarity=0.339 Sum_probs=45.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 40 ~~i~i~nl~k~y~~~~~l~~i-----s~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~ 92 (340)
T PRK13536 40 VAIDLAGVSKSYGDKAVVNGL-----SFTVASGECFGLLGPNGAGKSTIARMILGMTS 92 (340)
T ss_pred eeEEEEEEEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4899999987 45689999 99999999999999999999999999998764
No 200
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.26 E-value=2.4e-06 Score=93.04 Aligned_cols=44 Identities=30% Similarity=0.534 Sum_probs=37.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFYHSL 73 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~~~~ 73 (473)
.++.+|+++|.+||||||+|+.|++.+. +.++.+++.|++.+.+
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l 503 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGL 503 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhcc
Confidence 3588999999999999999999999984 3457889999887544
No 201
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.26 E-value=5.7e-07 Score=81.87 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=71.7
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCC--HHHH
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLT--DEKL 78 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~--~~~~ 78 (473)
|+++|+.+ ....++++ ++...++.+++|.|++|||||||.+.|+..+.. .|-..++..+.. ... ....
T Consensus 1 i~~~~l~~~~~~~~~l~~i-----~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~~~ 74 (178)
T cd03229 1 LELKNVSKRYGQKTVLNDV-----SLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLT-DLEDELPPL 74 (178)
T ss_pred CEEEEEEEEECCeEEEeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcc-ccchhHHHH
Confidence 46788855 44689999 999999999999999999999999999977653 333334332211 111 1111
Q ss_pred hhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 79 QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 79 ~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.....|.+..+..+....+.+.+.. . ++....+++.-.+. ..+++++++|.+....++
T Consensus 75 ~~~i~~~~q~~~~~~~~t~~~~l~~---------~-lS~G~~qr~~la~al~~~p~llilDEP~~~LD~ 133 (178)
T cd03229 75 RRRIGMVFQDFALFPHLTVLENIAL---------G-LSGGQQQRVALARALAMDPDVLLLDEPTSALDP 133 (178)
T ss_pred hhcEEEEecCCccCCCCCHHHheee---------c-CCHHHHHHHHHHHHHHCCCCEEEEeCCcccCCH
Confidence 1222233333322211111111110 0 33344444433332 467899999988776665
No 202
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.25 E-value=1e-05 Score=80.28 Aligned_cols=99 Identities=16% Similarity=0.213 Sum_probs=74.5
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++++|+...+|..+...+.+.+. +++..+.-.|...... -..+..+++|++|+|+|+|+.||+|++.|.+.|+++
T Consensus 169 ~~~vvV~pd~Ga~~~A~~la~~L~-~~~~~~~~~r~~~~~~---~~~i~gdV~gk~viIVDDIidTG~Tl~~aa~~Lk~~ 244 (323)
T PRK02458 169 SDVVVVSPKNSGIKRARSLAEYLD-APIAIIDYAQDDSERE---EGYIIGDVAGKKAILIDDILNTGKTFAEAAKIVERE 244 (323)
T ss_pred CceEEEEECCChHHHHHHHHHHhC-CCEEEEEEecCCCcce---eeccccccCCCEEEEEcceeCcHHHHHHHHHHHHhC
Confidence 467888999999999999988874 4544444333322111 123456899999999999999999999999999999
Q ss_pred CCCCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 391 GVPESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 391 g~~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
|+ ++|++++ .+-+....+++.+.
T Consensus 245 GA--~~V~~~~tHgif~~~a~~~l~~s 269 (323)
T PRK02458 245 GA--TEIYAVASHGLFAGGAAEVLENA 269 (323)
T ss_pred CC--CcEEEEEEChhcCchHHHHHhhC
Confidence 99 6788887 34556667888774
No 203
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=98.25 E-value=2.4e-06 Score=81.29 Aligned_cols=52 Identities=13% Similarity=0.230 Sum_probs=44.9
Q ss_pred Cc-cceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 ME-TVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~-~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+ .+|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~~~il~~i-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (233)
T PRK11629 1 MNKILLQCDNLCKRYQEGSVQTDVLHNV-----SFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDT 60 (233)
T ss_pred CCCceEEEEeEEEEcCCCCcceeeEEee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 53 4799999976 2 2579999 99999999999999999999999999998764
No 204
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=98.25 E-value=1e-05 Score=79.56 Aligned_cols=99 Identities=15% Similarity=0.133 Sum_probs=68.4
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCC
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~ 392 (473)
.++|+..-+|..+...+.+.+. +++..+.-.|...+...... ..-.+++|++|+|+|+|++||+|+..|.+.|+++|+
T Consensus 162 ~vVVsPd~g~~~~a~~la~~l~-~~~~~~~K~R~~~~~~~~~~-~~~~~v~Gr~vIIVDDIidTG~Tl~~aa~~Lk~~GA 239 (301)
T PRK07199 162 PLLIGPDEESEQWVAAVAERAG-APHAVLRKTRHGDRDVEISL-PDAAPWAGRTPVLVDDIVSTGRTLIEAARQLRAAGA 239 (301)
T ss_pred cEEEEeCCChHHHHHHHHHHhC-CCEEEEEEEecCCCeEEEEe-ccCcccCCCEEEEEecccCcHHHHHHHHHHHHHCCC
Confidence 4555666667777777776654 34333333343222112221 223468999999999999999999999999999999
Q ss_pred CCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 393 PESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 393 ~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
++|.+++ -+-+..+.+++.+.
T Consensus 240 --~~V~~~~tHgvfs~~a~~~l~~~ 262 (301)
T PRK07199 240 --ASPDCVVVHALFAGDAYSALAAA 262 (301)
T ss_pred --cEEEEEEEeeeCChHHHHHHHhC
Confidence 6888888 44577888888764
No 205
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.24 E-value=5.2e-06 Score=77.82 Aligned_cols=142 Identities=14% Similarity=0.118 Sum_probs=82.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCC------
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHS------ 72 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~------ 72 (473)
.+++++++++ ....|+++ ++...++.+|+|.|+|||||||+.+.++..... .|-..++....-..
T Consensus 2 ~~l~i~~v~~~f~~~~vl~~i-----~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p~~~~~~ 76 (248)
T COG1116 2 ALLEIEGVSKSFGGVEVLEDI-----NLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGPGPDIGY 76 (248)
T ss_pred ceEEEEeeEEEeCceEEeccc-----eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCCCCCEEE
Confidence 4788999966 56799999 999999999999999999999999999976543 33333433222100
Q ss_pred ----CCHHH-HhhccCccCCC-----CccccHHHHHHHHHHhhcC-Cceecc-ccccccccccccccc-cCCCcEEEEec
Q 035513 73 ----LTDEK-LQNLHDYNFDH-----PDAFDTELLLSDMEKLKHG-QAVSIP-DYDFKSHKRKQQSRL-INPSDVFILEG 139 (473)
Q Consensus 73 ----~~~~~-~~~~~~~~f~~-----~~~~d~~~l~~~l~~l~~g-~~i~~p-~~~~~~~~~~~~~~~-~~~~~viIlEG 139 (473)
..-.+ +.-..+..|.. ...-..+...+.|+...-. -.-.+| ..+...++|+..++. ...++++++|.
T Consensus 77 vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lLLlDE 156 (248)
T COG1116 77 VFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDE 156 (248)
T ss_pred EeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCccccChHHHHHHHHHHHHhcCCCEEEEcC
Confidence 00000 00001111110 1111112333344333221 112233 345556666665555 46799999999
Q ss_pred ccccCChhhh
Q 035513 140 ILVLHDPRVR 149 (473)
Q Consensus 140 ~~~l~~~~~~ 149 (473)
+|...+...+
T Consensus 157 PFgALDalTR 166 (248)
T COG1116 157 PFGALDALTR 166 (248)
T ss_pred CcchhhHHHH
Confidence 9988776443
No 206
>PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed
Probab=98.24 E-value=1.9e-06 Score=87.65 Aligned_cols=52 Identities=17% Similarity=0.211 Sum_probs=45.5
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+.+ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 11 ~~~~L~l~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~ 65 (375)
T PRK09452 11 LSPLVELRGISKSFDGKEVISNL-----DLTINNGEFLTLLGPSGCGKTTVLRLIAGFET 65 (375)
T ss_pred CCceEEEEEEEEEECCeEEEeee-----EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 456899999977 34579999 99999999999999999999999999998765
No 207
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=98.24 E-value=2e-06 Score=82.77 Aligned_cols=52 Identities=15% Similarity=0.319 Sum_probs=46.4
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+.+ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~vl~~v-----s~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~ 55 (251)
T PRK09544 1 MTSLVSLENVSVSFGQRRVLSDV-----SLELKPGKILTLLGPNGAGKSTLVRVVLGLVA 55 (251)
T ss_pred CCcEEEEeceEEEECCceEEEeE-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 667999999976 45689999 99999999999999999999999999997653
No 208
>COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.23 E-value=6e-06 Score=79.40 Aligned_cols=137 Identities=18% Similarity=0.249 Sum_probs=85.3
Q ss_pred ceeeccccc---c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh-CCCCEEEEecCCCCCCCC
Q 035513 4 VIELADDFA---D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL-RDQRVVLVNQDSFYHSLT 74 (473)
Q Consensus 4 ~i~~~~~~~---~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l-~~~~~~~is~D~~~~~~~ 74 (473)
+|++++++| . -..|+++ +...+++-+.||.|.||+|||||.+.+...- +..|-.+++.++... +.
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~v-----sL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~-l~ 74 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDV-----SLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTA-LS 74 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccc-----eEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEeccc-CC
Confidence 589999987 2 2478888 9999999999999999999999999986432 235677777765542 33
Q ss_pred HHH----HhhccCccCCCCcc------------------ccHHHHHHHHHHhhc-----CCceecc-ccccccccccccc
Q 035513 75 DEK----LQNLHDYNFDHPDA------------------FDTELLLSDMEKLKH-----GQAVSIP-DYDFKSHKRKQQS 126 (473)
Q Consensus 75 ~~~----~~~~~~~~f~~~~~------------------~d~~~l~~~l~~l~~-----g~~i~~p-~~~~~~~~~~~~~ 126 (473)
... +... ...|.++.- +......+...++.+ ...-.+| ..+...++|+..+
T Consensus 75 ~~~Lr~~R~~I-GMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~yP~qLSGGQKQRVaIA 153 (339)
T COG1135 75 EAELRQLRQKI-GMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADRYPAQLSGGQKQRVAIA 153 (339)
T ss_pred hHHHHHHHhhc-cEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhccCchhcCcchhhHHHHH
Confidence 333 1222 223444321 112222222222222 1111234 3566666777666
Q ss_pred cc-cCCCcEEEEecccccCChh
Q 035513 127 RL-INPSDVFILEGILVLHDPR 147 (473)
Q Consensus 127 ~~-~~~~~viIlEG~~~l~~~~ 147 (473)
+. ..++++++.|......+|.
T Consensus 154 RALa~~P~iLL~DEaTSALDP~ 175 (339)
T COG1135 154 RALANNPKILLCDEATSALDPE 175 (339)
T ss_pred HHHhcCCCEEEecCccccCChH
Confidence 55 4578999999888777774
No 209
>COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=98.23 E-value=2.1e-06 Score=79.33 Aligned_cols=51 Identities=20% Similarity=0.339 Sum_probs=46.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+++++|+.. ..+.|+++ ++..+++.++++.|++|+||||+.+.|+...+.
T Consensus 2 ~mL~v~~l~~~YG~~~~L~gv-----sl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~ 55 (237)
T COG0410 2 PMLEVENLSAGYGKIQALRGV-----SLEVERGEIVALLGRNGAGKTTLLKTIMGLVRP 55 (237)
T ss_pred CceeEEeEeecccceeEEeee-----eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 5899999955 67899999 999999999999999999999999999987653
No 210
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.23 E-value=1e-06 Score=79.76 Aligned_cols=123 Identities=16% Similarity=0.262 Sum_probs=71.0
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHHhh
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQN 80 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~~~ 80 (473)
|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.. .|-..++..+.- ... .....
T Consensus 1 l~~~~l~~~~~~~~~l~~~-----~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~-~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGKKTALDDI-----SLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIK-KEP-EEVKR 73 (173)
T ss_pred CEEEEEEEEECCeeeeeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcc-cch-Hhhhc
Confidence 46788865 34579999 999999999999999999999999999987642 333333221111 111 11111
Q ss_pred ccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 81 LHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 81 ~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
...+.|..+..+....+.+.+. ++....+++.-++. ..+++++++|.+....++
T Consensus 74 ~i~~~~q~~~~~~~~tv~~~~~------------LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 128 (173)
T cd03230 74 RIGYLPEEPSLYENLTVRENLK------------LSGGMKQRLALAQALLHDPELLILDEPTSGLDP 128 (173)
T ss_pred cEEEEecCCccccCCcHHHHhh------------cCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCH
Confidence 1223344433222111122211 33333444433332 467899999988776655
No 211
>PRK00455 pyrE orotate phosphoribosyltransferase; Validated
Probab=98.22 E-value=1.1e-05 Score=74.89 Aligned_cols=102 Identities=12% Similarity=0.242 Sum_probs=71.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC-CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS-GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~-~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~ 392 (473)
++|.+.++|.++...+.+.+. ++ .+.+.+.... ..... ...+ ...|++|+|+|++++||+|+..+++.|++.|+
T Consensus 67 ~Ivgi~~gG~~~A~~la~~L~-~~--~~~~rk~~~~~g~~~~-~~~~-~~~g~~VliVDDvi~tG~Tl~~~~~~l~~~Ga 141 (202)
T PRK00455 67 VVAGPATGGIPLAAAVARALD-LP--AIFVRKEAKDHGEGGQ-IEGR-RLFGKRVLVVEDVITTGGSVLEAVEAIRAAGA 141 (202)
T ss_pred EEEecccCcHHHHHHHHHHhC-CC--EEEEecccCCCCCCce-EEcc-CCCCCEEEEEecccCCcHHHHHHHHHHHHcCC
Confidence 567888999999998888774 44 4444443221 11111 1122 45699999999999999999999999999998
Q ss_pred CCCcEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 035513 393 PESNIIFLNLIAAPQGIHAICKRFPKIKIVT 423 (473)
Q Consensus 393 ~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~ 423 (473)
+.+.+++++...+|..+..+.+ ++++++
T Consensus 142 --~~v~~~vlv~~~~~~~~~~~~~-g~~~~s 169 (202)
T PRK00455 142 --EVVGVAVIVDRQSAAQEVFADA-GVPLIS 169 (202)
T ss_pred --EEEEEEEEEECcchHHHHHHhc-CCcEEE
Confidence 6778888888866666655554 355444
No 212
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1.9e-06 Score=80.71 Aligned_cols=48 Identities=21% Similarity=0.252 Sum_probs=41.9
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03259 1 LELKGLSKTYGSVRALDDL-----SLTVEPGEFLALLGPSGCGKTTLLRLIAGLER 51 (213)
T ss_pred CeeeeeEEEeCCeeeecce-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788866 34589999 99999999999999999999999999998764
No 213
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.22 E-value=1.3e-06 Score=78.88 Aligned_cols=122 Identities=18% Similarity=0.257 Sum_probs=72.1
Q ss_pred eeeccccc---cc--ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHH
Q 035513 5 IELADDFA---DD--LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 5 i~~~~~~~---~~--~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~ 78 (473)
|+++|+++ ++ ..++++ ++....+.+++|.|++|||||||.+.|+..++. .|-..+...+.. .......
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i-----~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~-~~~~~~~ 74 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDV-----SLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLR-DLDLESL 74 (171)
T ss_pred CEEEEEEEEcCCCCcccccce-----EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhh-hcCHHHH
Confidence 46788865 22 589999 999999999999999999999999999987653 343333332211 1111111
Q ss_pred hhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 79 QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 79 ~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.....+.|..+..++. .+.+.+ ++....+++.-.+. ..+++++++|.+....++
T Consensus 75 ~~~i~~~~~~~~~~~~-t~~e~l-------------LS~G~~~rl~la~al~~~p~llllDEP~~gLD~ 129 (171)
T cd03228 75 RKNIAYVPQDPFLFSG-TIRENI-------------LSGGQRQRIAIARALLRDPPILILDEATSALDP 129 (171)
T ss_pred HhhEEEEcCCchhccc-hHHHHh-------------hCHHHHHHHHHHHHHhcCCCEEEEECCCcCCCH
Confidence 1222233444432221 111111 33334444433332 457899999988776665
No 214
>TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans.
Probab=98.22 E-value=2.1e-06 Score=85.03 Aligned_cols=50 Identities=18% Similarity=0.369 Sum_probs=44.7
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+.+.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~i~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 55 (303)
T TIGR01288 3 VAIDLVGVSKSYGDKVVVNDL-----SFTIARGECFGLLGPNGAGKSTIARMLLGMIS 55 (303)
T ss_pred cEEEEEeEEEEeCCeEEEcce-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999977 44689999 99999999999999999999999999998764
No 215
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=1.5e-06 Score=80.13 Aligned_cols=83 Identities=17% Similarity=0.263 Sum_probs=61.8
Q ss_pred cceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC-----CCC
Q 035513 3 TVIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY-----HSL 73 (473)
Q Consensus 3 ~~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~-----~~~ 73 (473)
.+++++||.. + +.+|+++ |+..+.+.+-+|.||.|||||||+..|+.+-+ +.+.+.+-.+ ..+
T Consensus 2 ~~L~I~dLhv~v~~~keILkgv-----nL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~---Y~Vt~G~I~~~GedI~~l 73 (251)
T COG0396 2 MMLEIKDLHVEVEGKKEILKGV-----NLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPK---YEVTEGEILFDGEDILEL 73 (251)
T ss_pred ceeEEeeeEEEecCchhhhcCc-----ceeEcCCcEEEEECCCCCCHHHHHHHHhCCCC---ceEecceEEECCcccccC
Confidence 5899999944 5 4899999 99999999999999999999999999987643 5444433222 246
Q ss_pred CHHHHhhccC-ccCCCCcccc
Q 035513 74 TDEKLQNLHD-YNFDHPDAFD 93 (473)
Q Consensus 74 ~~~~~~~~~~-~~f~~~~~~d 93 (473)
+..+|+..+- ..|+.|..+.
T Consensus 74 ~~~ERAr~GifLafQ~P~ei~ 94 (251)
T COG0396 74 SPDERARAGIFLAFQYPVEIP 94 (251)
T ss_pred CHhHHHhcCCEEeecCCccCC
Confidence 6666666554 3577765544
No 216
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=98.22 E-value=1.5e-06 Score=78.67 Aligned_cols=122 Identities=15% Similarity=0.199 Sum_probs=71.6
Q ss_pred eeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHH
Q 035513 5 IELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 5 i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~ 78 (473)
|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.. .|-..++..+.. .......
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~-----~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~~~~~~ 74 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNV-----SFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADIS-QWDPNEL 74 (173)
T ss_pred CEEEEEEEEcCCCCCcceeee-----EEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcc-cCCHHHH
Confidence 56788865 2 3478899 899999999999999999999999999987642 333333322211 1122121
Q ss_pred hhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 79 QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 79 ~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
...-.+.+..+..+.. -+.+.+ ++....+++.-++. +.+++++++|.+....++
T Consensus 75 ~~~i~~~~q~~~~~~~-tv~~~l-------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~ 129 (173)
T cd03246 75 GDHVGYLPQDDELFSG-SIAENI-------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDV 129 (173)
T ss_pred HhheEEECCCCccccC-cHHHHC-------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCH
Confidence 1222233444322211 111111 33334444433332 567899999987776665
No 217
>PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional
Probab=98.21 E-value=2.3e-06 Score=86.98 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=44.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ +...++++ +++...+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~~l~i~~l~~~~~~~~vl~~v-----sl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~ 54 (369)
T PRK11000 2 ASVTLRNVTKAYGDVVISKDI-----NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLED 54 (369)
T ss_pred CEEEEEEEEEEeCCeEEEeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 3799999977 44689999 99999999999999999999999999998764
No 218
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.21 E-value=2e-06 Score=83.92 Aligned_cols=52 Identities=17% Similarity=0.225 Sum_probs=46.3
Q ss_pred Cccceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (274)
T PRK13647 1 MDNIIEVEDLHFRYKDGTKALKGL-----SLSIPEGSKTALLGPNGAGKSTLLLHLNGIYL 56 (274)
T ss_pred CCceEEEEEEEEEeCCCCeeeeeE-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 777999999976 2 4589999 99999999999999999999999999998764
No 219
>PRK13976 thymidylate kinase; Provisional
Probab=98.21 E-value=1.6e-06 Score=80.87 Aligned_cols=26 Identities=35% Similarity=0.448 Sum_probs=23.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
++|+|.|..||||||+++.|++.|..
T Consensus 1 ~fIv~EGiDGsGKsTq~~~L~~~L~~ 26 (209)
T PRK13976 1 MFITFEGIDGSGKTTQSRLLAEYLSD 26 (209)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 36999999999999999999999874
No 220
>PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed
Probab=98.21 E-value=3.2e-06 Score=86.57 Aligned_cols=50 Identities=24% Similarity=0.406 Sum_probs=45.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~L~~~nls~~y~~~~vL~~v-----s~~i~~Geiv~liGpNGaGKSTLLk~LaGll~ 54 (402)
T PRK09536 2 PMIDVSDLSVEFGDTTVLDGV-----DLSVREGSLVGLVGPNGAGKTTLLRAINGTLT 54 (402)
T ss_pred ceEEEeeEEEEECCEEEEEee-----EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 5899999976 55789999 99999999999999999999999999998764
No 221
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=98.20 E-value=2.3e-06 Score=80.43 Aligned_cols=48 Identities=23% Similarity=0.306 Sum_probs=41.8
Q ss_pred eeeccccc---c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ + ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~-----s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 55 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGV-----SLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR 55 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeee-----EEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcC
Confidence 56788865 2 4689999 99999999999999999999999999998764
No 222
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=98.20 E-value=1.8e-06 Score=93.56 Aligned_cols=53 Identities=21% Similarity=0.163 Sum_probs=45.2
Q ss_pred ceeecccc-c---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 035513 4 VIELADDF-A---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRV 61 (473)
Q Consensus 4 ~i~~~~~~-~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~ 61 (473)
-|+++|++ + ++..|+++ |...+++..++|.|+|||||||+++.|...++..|-
T Consensus 349 ~i~~~~vsf~~~~~~~vL~~i-----~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~p~~G~ 405 (588)
T PRK11174 349 TIEAEDLEILSPDGKTLAGPL-----NFTLPAGQRIALVGPSGAGKTSLLNALLGFLPYQGS 405 (588)
T ss_pred eEEEEeeEEeccCCCeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCcE
Confidence 48899995 3 45689999 999999999999999999999999999988754443
No 223
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=98.20 E-value=1.3e-06 Score=93.39 Aligned_cols=49 Identities=20% Similarity=0.238 Sum_probs=43.4
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. ++..|+++ |...+++..++|.|+|||||||+++.|...+.
T Consensus 334 ~I~~~~vsf~Y~~~~~vL~~i-----sl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 334 TLELRDLSFGYPGSPPVLDGV-----SLDLPPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred eEEEEEEEEecCCCCceeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999965 24589999 99999999999999999999999999998775
No 224
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.19 E-value=1.9e-06 Score=80.51 Aligned_cols=48 Identities=21% Similarity=0.341 Sum_probs=41.8
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ++..++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 51 (210)
T cd03269 1 LEVENVTKRFGRVTALDDI-----SFSVEKGEIFGLLGPNGAGKTTTIRMILGIIL 51 (210)
T ss_pred CEEEEEEEEECCEEEEeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 34689999 99999999999999999999999999998654
No 225
>PRK14267 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.19 E-value=1.9e-06 Score=82.95 Aligned_cols=52 Identities=19% Similarity=0.221 Sum_probs=47.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 55 (253)
T PRK14267 1 MKFAIETVNLRVYYGSNHVIKGV-----DLKIPQNGVFALMGPSGCGKSTLLRTFNRLLE 55 (253)
T ss_pred CcceEEEEeEEEEeCCeeeeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 778999999976 35689999 99999999999999999999999999998764
No 226
>COG2065 PyrR Pyrimidine operon attenuation protein/uracil phosphoribosyltransferase [Nucleotide transport and metabolism]
Probab=98.19 E-value=7e-06 Score=71.10 Aligned_cols=117 Identities=21% Similarity=0.336 Sum_probs=89.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-----CceeeE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-----GIKIGK 340 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-----~a~~g~ 340 (473)
+..++++.+.||+.-+++.- .| ..++++|.|-+.|.++++-+.+-+. ++++|-
T Consensus 8 d~~~i~RtitRia~eIiErn-------------------k~---~~~~vlvGIktrGv~lA~rl~~~i~~~Eg~~vp~g~ 65 (179)
T COG2065 8 DEAAIRRTITRIAHEIIERN-------------------KG---LDNLVLVGIKTRGVPLAERLAERIEELEGIEVPVGE 65 (179)
T ss_pred CHHHHHHHHHHHHHHHHHHh-------------------CC---CCceEEEeEecCCHHHHHHHHHHHHHHhCCCCCeee
Confidence 44578888888877766531 11 1378888899999998887766554 445776
Q ss_pred EE--EEEcCCC-----CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeC
Q 035513 341 IL--IHREGNS-----GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAA 405 (473)
Q Consensus 341 i~--~~r~~~~-----~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~ 405 (473)
+- ++||.-+ .+...-..+|.+++++.|+|+|++|.||.|+.+|+..|.+.|-+ +.|.+++++.-
T Consensus 66 lDIt~yRDDl~~~~~~~p~~~~t~~~~di~~k~VILVDDVLytGRTIRAAldal~d~GRP-a~I~LavLVDR 136 (179)
T COG2065 66 LDITLYRDDLTQKGPLRPQAKTTILPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRP-AKIQLAVLVDR 136 (179)
T ss_pred EEeEEeechhhhcCccCCcccCccCcccccCCEEEEEeeecccCccHHHHHHHHHhcCCc-ceEEEEEEEcC
Confidence 54 4687542 22445577888999999999999999999999999999999976 79999998853
No 227
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=98.19 E-value=2.3e-06 Score=80.18 Aligned_cols=49 Identities=18% Similarity=0.296 Sum_probs=42.8
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~i-----s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (214)
T TIGR02673 1 MIEFHNVSKAYPGGVAALHDV-----SLHIRKGEFLFLTGPSGAGKTTLLKLLYGALT 53 (214)
T ss_pred CEEEEeeeEEeCCCceeecce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999965 24589999 99999999999999999999999999998764
No 228
>PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional
Probab=98.19 E-value=3e-06 Score=85.42 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 57 (351)
T PRK11432 5 NFVVLKNITKRFGSNTVIDNL-----NLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEK 57 (351)
T ss_pred cEEEEEeEEEEECCeEEEeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 5899999977 34579999 99999999999999999999999999998764
No 229
>KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.19 E-value=5.1e-06 Score=88.06 Aligned_cols=52 Identities=23% Similarity=0.347 Sum_probs=46.9
Q ss_pred ccceeeccccc------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 2 ETVIELADDFA------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 2 ~~~i~~~~~~~------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
+..|||+|+++ +.++|+++ |.+.+.+.++++.|||||||||++..|.+.|.+
T Consensus 463 ~G~IeF~~VsFaYP~Rp~~~Vlk~l-----sfti~pGe~vALVGPSGsGKSTiasLL~rfY~P 520 (716)
T KOG0058|consen 463 QGVIEFEDVSFAYPTRPDVPVLKNL-----SFTIRPGEVVALVGPSGSGKSTIASLLLRFYDP 520 (716)
T ss_pred cceEEEEEeeeecCCCCCchhhcCc-----eeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCC
Confidence 46799999966 46699999 999999999999999999999999999998864
No 230
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.19 E-value=6.3e-06 Score=72.74 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFY 70 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~ 70 (473)
+|.|+|.+||||||+|+.|++.+.. .++.+++.|.+.
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r 39 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVR 39 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHH
Confidence 4789999999999999999999842 235666666554
No 231
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=98.17 E-value=2.1e-06 Score=93.54 Aligned_cols=51 Identities=18% Similarity=0.275 Sum_probs=44.7
Q ss_pred cceeeccccc----c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 3 TVIELADDFA----D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 3 ~~i~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
+-|+++|+++ + ...|+++ |...+.+..|+|.|.|||||||++|.|...+.+
T Consensus 470 g~I~~~nvsf~y~~~~~~vL~~i-----sL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p 525 (709)
T COG2274 470 GEIEFENVSFRYGPDDPPVLEDL-----SLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKP 525 (709)
T ss_pred ceEEEEEEEEEeCCCCcchhhce-----eEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 4689999966 2 4599999 999999999999999999999999999987753
No 232
>PRK11607 potG putrescine transporter ATP-binding subunit; Provisional
Probab=98.17 E-value=3.1e-06 Score=86.12 Aligned_cols=52 Identities=12% Similarity=0.264 Sum_probs=45.1
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+.+ +...++++ ++..+.+.+++|.|+|||||||+.+.|+....
T Consensus 16 ~~~~l~l~~v~~~~~~~~~l~~v-----sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 70 (377)
T PRK11607 16 LTPLLEIRNLTKSFDGQHAVDDV-----SLTIYKGEIFALLGASGCGKSTLLRMLAGFEQ 70 (377)
T ss_pred CCceEEEEeEEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 346799999977 34688999 99999999999999999999999999997654
No 233
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=98.17 E-value=3e-06 Score=80.79 Aligned_cols=49 Identities=14% Similarity=0.229 Sum_probs=43.2
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++...++.+++|.|++|||||||++.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (236)
T TIGR03864 1 ALEVAGLSFAYGARRALDDV-----SFTVRPGEFVALLGPNGAGKSTLFSLLTRLYV 52 (236)
T ss_pred CEEEEeeEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999965 45689999 99999999999999999999999999997764
No 234
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=98.17 E-value=2.7e-06 Score=77.95 Aligned_cols=26 Identities=27% Similarity=0.372 Sum_probs=23.2
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCCEE
Q 035513 37 VAGGTASGKTTVCNMIISRLRDQRVV 62 (473)
Q Consensus 37 I~G~sGSGKTTla~~La~~l~~~~~~ 62 (473)
|.|..||||||+++.|++++...+..
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~ 26 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYK 26 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEE
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCc
Confidence 67999999999999999999876665
No 235
>PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=3.5e-06 Score=85.21 Aligned_cols=50 Identities=16% Similarity=0.189 Sum_probs=44.0
Q ss_pred cceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~l~i~~l~~~~~~~~~~l~~v-----sl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~ 55 (356)
T PRK11650 2 AGLKLQAVRKSYDGKTQVIKGI-----DLDVADGEFIVLVGPSGCGKSTLLRMVAGLER 55 (356)
T ss_pred CEEEEEeEEEEeCCCCEEEeee-----eEEEcCCCEEEEECCCCCcHHHHHHHHHCCCC
Confidence 4799999966 24589999 99999999999999999999999999998754
No 236
>PLN02165 adenylate isopentenyltransferase
Probab=98.16 E-value=9.7e-06 Score=80.02 Aligned_cols=39 Identities=23% Similarity=0.372 Sum_probs=34.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
+..++.+|+|.|++||||||+|..|++.++ ..++++|.+
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~---~eIIsaDs~ 77 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFP---SEIINSDKM 77 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcC---CceecCChh
Confidence 445566999999999999999999999987 689999975
No 237
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=98.16 E-value=2.9e-06 Score=80.01 Aligned_cols=48 Identities=21% Similarity=0.302 Sum_probs=42.0
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (222)
T cd03224 1 LEVENLNAGYGKSQILFGV-----SLTVPEGEIVALLGRNGAGKTTLLKTIMGLLP 51 (222)
T ss_pred CEEeeEEeecCCeeEeeee-----eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 34689999 99999999999999999999999999997664
No 238
>PRK13549 xylose transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=4.7e-06 Score=88.60 Aligned_cols=51 Identities=14% Similarity=0.285 Sum_probs=45.8
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~~l~~~nl~~~~~~~~il~~i-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (506)
T PRK13549 3 EYLLEMKNITKTFGGVKALDNV-----SLKVRAGEIVSLCGENGAGKSTLMKVLSGVYP 56 (506)
T ss_pred CceEEEeeeEEEeCCeEeecce-----eEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999977 44689999 99999999999999999999999999998765
No 239
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.16 E-value=4.4e-06 Score=79.77 Aligned_cols=49 Identities=24% Similarity=0.316 Sum_probs=43.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ +...++++ +++..++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (239)
T cd03296 2 SIEVRNVSKRFGDFVALDDV-----SLDIPSGELVALLGPSGSGKTTLLRLIAGLER 53 (239)
T ss_pred EEEEEeEEEEECCEEeeeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999976 45689999 99999999999999999999999999998764
No 240
>PRK13548 hmuV hemin importer ATP-binding subunit; Provisional
Probab=98.16 E-value=3.9e-06 Score=81.18 Aligned_cols=49 Identities=16% Similarity=0.267 Sum_probs=43.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ +++.+++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 53 (258)
T PRK13548 2 MLEARNLSVRLGGRTLLDDV-----SLTLRPGEVVAILGPNGAGKSTLLRALSGELS 53 (258)
T ss_pred eEEEEeEEEEeCCeeeeeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999976 45689999 99999999999999999999999999998764
No 241
>PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.16 E-value=3.1e-06 Score=82.86 Aligned_cols=51 Identities=18% Similarity=0.268 Sum_probs=45.0
Q ss_pred ccceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+.+ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~ 58 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDV-----SFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLL 58 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 46899999966 2 3489999 99999999999999999999999999998764
No 242
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=98.15 E-value=2e-05 Score=67.62 Aligned_cols=45 Identities=24% Similarity=0.376 Sum_probs=36.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCCCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSL 73 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~~~~ 73 (473)
..++.+|+|+|.|||||||+|-.|.+.+.+.+ ...++.|++.+.+
T Consensus 28 ~qkGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGL 74 (207)
T KOG0635|consen 28 KQKGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGL 74 (207)
T ss_pred cCCCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccc
Confidence 45678999999999999999999999886544 5677888776544
No 243
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2e-06 Score=79.24 Aligned_cols=129 Identities=13% Similarity=0.088 Sum_probs=73.1
Q ss_pred cceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh---CCCCEEEEecCCCCCC
Q 035513 3 TVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL---RDQRVVLVNQDSFYHS 72 (473)
Q Consensus 3 ~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l---~~~~~~~is~D~~~~~ 72 (473)
.+|+++|+.+ . ...++++ ++..+.+.+++|.|++||||||+.+.|+..+ ...|-..++..++.
T Consensus 2 ~~l~~~~l~~~~~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~-- 74 (192)
T cd03232 2 SVLTWKNLNYTVPVKGGKRQLLNNI-----SGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLD-- 74 (192)
T ss_pred cEEEEeeeEEEecCCCCceEeEEcc-----EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehH--
Confidence 3789999966 2 4589999 8999999999999999999999999999643 12333333322211
Q ss_pred CCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 73 LTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 73 ~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
........+.+..+..+....+.+.+..... . ..++....+++.-++. +.+++++++|.+....++
T Consensus 75 ---~~~~~~i~~~~q~~~~~~~~tv~~~l~~~~~---~--~~LSgGe~qrv~la~al~~~p~vlllDEP~~~LD~ 141 (192)
T cd03232 75 ---KNFQRSTGYVEQQDVHSPNLTVREALRFSAL---L--RGLSVEQRKRLTIGVELAAKPSILFLDEPTSGLDS 141 (192)
T ss_pred ---HHhhhceEEecccCccccCCcHHHHHHHHHH---H--hcCCHHHhHHHHHHHHHhcCCcEEEEeCCCcCCCH
Confidence 1111111233333322221111222211000 0 0344444455543333 467899999988776654
No 244
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.15 E-value=2.9e-06 Score=79.95 Aligned_cols=48 Identities=23% Similarity=0.389 Sum_probs=42.2
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 i~~~~~~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 51 (220)
T cd03265 1 IEVENLVKKYGDFEAVRGV-----SFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLK 51 (220)
T ss_pred CEEEEEEEEECCEEeeece-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888865 45689999 99999999999999999999999999998764
No 245
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=98.15 E-value=1.6e-06 Score=77.79 Aligned_cols=48 Identities=17% Similarity=0.270 Sum_probs=41.9
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~vl~~i-----~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (163)
T cd03216 1 LELRGITKRFGGVKALDGV-----SLSVRRGEVHALLGENGAGKSTLMKILSGLYK 51 (163)
T ss_pred CEEEEEEEEECCeEEEeee-----EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56888866 44689999 99999999999999999999999999997764
No 246
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=98.14 E-value=1.5e-05 Score=77.32 Aligned_cols=90 Identities=17% Similarity=0.255 Sum_probs=63.7
Q ss_pred cCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEE
Q 035513 321 SGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400 (473)
Q Consensus 321 aG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~ 400 (473)
+|..-...+.+.+-.. .+.+-=.|+ .......-..+=-|++||+++|+|+|++||||++.|.+.|+++|+ ++|+++
T Consensus 173 Ggv~RAr~~A~~L~~~-~a~i~K~R~-~~~~~v~~~~~~gdV~gk~~iiVDDiIdTgGTi~~Aa~~Lk~~GA--k~V~a~ 248 (314)
T COG0462 173 GGVKRARALADRLGAP-LAIIDKRRD-SSPNVVEVMNLIGDVEGKDVVIVDDIIDTGGTIAKAAKALKERGA--KKVYAA 248 (314)
T ss_pred cHHHHHHHHHHHhCCC-EEEEEEeec-CCCCeEEEeecccccCCCEEEEEeccccccHHHHHHHHHHHHCCC--CeEEEE
Confidence 3444445555554433 566666675 333334444555689999999999999999999999999999999 789888
Q ss_pred E---EEeCHHHHHHHHHh
Q 035513 401 N---LIAAPQGIHAICKR 415 (473)
Q Consensus 401 ~---~~~~~~g~~~~~~~ 415 (473)
| +++ ....+++.+-
T Consensus 249 ~tH~vfs-~~a~~~l~~~ 265 (314)
T COG0462 249 ATHGVFS-GAALERLEAS 265 (314)
T ss_pred EEchhhC-hHHHHHHhcC
Confidence 8 444 5556666654
No 247
>PRK10762 D-ribose transporter ATP binding protein; Provisional
Probab=98.14 E-value=5.8e-06 Score=87.77 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=46.9
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~i~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 55 (501)
T PRK10762 1 MQALLQLKGIDKAFPGVKALSGA-----ALNVYPGRVMALVGENGAGKSTMMKVLTGIYT 55 (501)
T ss_pred CCceEEEeeeEEEeCCeEEeeee-----eEEEcCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 778999999976 44689999 99999999999999999999999999998764
No 248
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=98.13 E-value=4.4e-06 Score=80.61 Aligned_cols=49 Identities=20% Similarity=0.344 Sum_probs=43.3
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (255)
T PRK11248 1 MLQISHLYADYGGKPALEDI-----NLTLESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred CEEEEEEEEEeCCeeeEeee-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999976 34689999 99999999999999999999999999998764
No 249
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.13 E-value=3.6e-06 Score=79.29 Aligned_cols=48 Identities=17% Similarity=0.287 Sum_probs=41.4
Q ss_pred eeeccccc---c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~v-----s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDI-----SLSVEEGEFVALVGPSGCGKSTLLRIIAGLER 55 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEece-----eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788865 2 4689999 99999999999999999999999999998754
No 250
>KOG4235 consensus Mitochondrial thymidine kinase 2/deoxyguanosine kinase [Nucleotide transport and metabolism]
Probab=98.13 E-value=1.2e-06 Score=78.28 Aligned_cols=84 Identities=10% Similarity=0.111 Sum_probs=53.2
Q ss_pred cccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCC----
Q 035513 127 RLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILP---- 202 (473)
Q Consensus 127 ~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~---- 202 (473)
..+...++.|++.|+-.......-..|..|||.+++++|++|+.+|...+.+ .+.-.|.+..+...+.|+..
T Consensus 129 g~m~e~e~~iy~eW~d~i~~~~~v~~dgiIYLrasPetc~~Ri~~R~R~EE~----gipL~YLe~LH~~HE~WLi~~~f~ 204 (244)
T KOG4235|consen 129 GSMNEVEYVIYQEWFDWILRSMDVSLDGIIYLRASPETCYKRIYLRAREEEK----GIPLKYLEALHELHESWLIKLHFP 204 (244)
T ss_pred CCcccchhhhHHHHHHHHHhccccccceEEEeecChHHHHHHHHHHhhhhhc----CCcHHHHHHHHHHHHHHHHHHhhh
Confidence 3356677888888775544333345689999999999999999998543322 22234556556566666431
Q ss_pred -ccccccEecccC
Q 035513 203 -SKKYADIIIPRG 214 (473)
Q Consensus 203 -~~~~ad~vI~~~ 214 (473)
..+..-+|++.+
T Consensus 205 ~lq~vpvLVLDad 217 (244)
T KOG4235|consen 205 NLQAVPVLVLDAD 217 (244)
T ss_pred HhhcCCeEEEecc
Confidence 133455666655
No 251
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=98.13 E-value=2.8e-06 Score=78.86 Aligned_cols=129 Identities=18% Similarity=0.164 Sum_probs=73.2
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh---CCCCEEEEecCCCCCCCCHHHH
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL---RDQRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l---~~~~~~~is~D~~~~~~~~~~~ 78 (473)
|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+... +..|-..++..+.- ......+
T Consensus 1 l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~-~~~~~~~ 74 (200)
T cd03217 1 LEIKDLHVSVGGKEILKGV-----NLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDIT-DLPPEER 74 (200)
T ss_pred CeEEEEEEEeCCEEeeecc-----ceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECC-cCCHHHH
Confidence 46788866 44689999 9999999999999999999999999999873 23344444433221 1111111
Q ss_pred -hhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 79 -QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 79 -~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.....|.+..+..+..-...+.+.... ..++....+++.-.+. +.+++++++|.+....++
T Consensus 75 ~~~~i~~v~q~~~~~~~~~~~~~l~~~~-------~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~ 137 (200)
T cd03217 75 ARLGIFLAFQYPPEIPGVKNADFLRYVN-------EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDI 137 (200)
T ss_pred hhCcEEEeecChhhccCccHHHHHhhcc-------ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCH
Confidence 111223333332221111222221110 1244444444433333 467899999977766654
No 252
>TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria.
Probab=98.12 E-value=8.5e-06 Score=81.85 Aligned_cols=58 Identities=21% Similarity=0.287 Sum_probs=47.0
Q ss_pred ceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEec
Q 035513 4 VIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQ 66 (473)
Q Consensus 4 ~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~ 66 (473)
+|+++|+++ . ...|+++ ++...++.+++|.|++|||||||.+.|+..+.. .|-..++.
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~v-----sl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G 66 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNV-----SLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG 66 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECC
Confidence 489999976 2 2589999 999999999999999999999999999987653 34444443
No 253
>PLN02293 adenine phosphoribosyltransferase
Probab=98.12 E-value=2.4e-05 Score=71.48 Aligned_cols=50 Identities=22% Similarity=0.407 Sum_probs=44.4
Q ss_pred CCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHH--HHHHHHH
Q 035513 363 SSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQ--GIHAICK 414 (473)
Q Consensus 363 ~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~--g~~~~~~ 414 (473)
+|+.|+|+|++++||+|+.++++.|++.|+ +.+.++++++.++ |.+++..
T Consensus 124 ~G~rVlIVDDvitTG~T~~~~~~~l~~~Ga--~~v~~~~~~~~~~~~g~~~l~~ 175 (187)
T PLN02293 124 PGERALVIDDLIATGGTLCAAINLLERAGA--EVVECACVIELPELKGREKLNG 175 (187)
T ss_pred CCCEEEEEeccccchHHHHHHHHHHHHCCC--EEEEEEEEEEcCCccHHHHhcC
Confidence 689999999999999999999999999998 5688888888666 8888863
No 254
>TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein. This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely.
Probab=98.11 E-value=4.6e-06 Score=84.23 Aligned_cols=50 Identities=18% Similarity=0.225 Sum_probs=44.2
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....|+++ ++..+.+.+++|.|++||||||+.+.|+....
T Consensus 3 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~ 55 (353)
T TIGR03265 3 PYLSIDNIRKRFGAFTALKDI-----SLSVKKGEFVCLLGPSGCGKTTLLRIIAGLER 55 (353)
T ss_pred cEEEEEEEEEEeCCeEEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHCCCC
Confidence 4799999977 34579999 99999999999999999999999999998764
No 255
>PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional
Probab=98.11 E-value=6.5e-06 Score=79.38 Aligned_cols=52 Identities=23% Similarity=0.378 Sum_probs=45.8
Q ss_pred Cccceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|-..|+++|+++ +...++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~il~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 54 (254)
T PRK10418 1 MPQQIELRNIALQAAQPLVHGV-----SLTLQRGRVLALVGGSGSGKSLTCAAALGILP 54 (254)
T ss_pred CCcEEEEeCeEEEeccceecce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 555899999976 45689999 99999999999999999999999999998754
No 256
>COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=98.11 E-value=6.7e-06 Score=78.93 Aligned_cols=59 Identities=17% Similarity=0.200 Sum_probs=47.6
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQD 67 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D 67 (473)
.|.++|+.+ .-..+.++ +...+.+.++++.|||||||||+.+.||.... ..|..+++..
T Consensus 2 ~i~i~~~~~~~~~~~a~~di-----~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~ 64 (345)
T COG1118 2 SIRINNVKKRFGAFGALDDI-----SLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGR 64 (345)
T ss_pred ceeehhhhhhcccccccccc-----eeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCE
Confidence 588888877 45578889 88999999999999999999999999998654 2445555443
No 257
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=98.10 E-value=2e-06 Score=78.30 Aligned_cols=124 Identities=20% Similarity=0.292 Sum_probs=71.4
Q ss_pred eeeccccc---cc--ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHH
Q 035513 5 IELADDFA---DD--LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKL 78 (473)
Q Consensus 5 i~~~~~~~---~~--~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~ 78 (473)
|+++|+++ .. ..++++ ++...++.+++|.|++|||||||++.|+..+.. .|-..++..+.- .. ....
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i-----~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~-~~-~~~~ 73 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNL-----SLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVS-DL-EKAL 73 (178)
T ss_pred CEEEEEEEEeCCCCccceEEE-----EEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHH-HH-HHHH
Confidence 56788865 22 589999 999999999999999999999999999987642 333333321110 00 1111
Q ss_pred hhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 79 QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 79 ~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.....|.+..+.-+.. -+.+.+ ...++....+++.-++. +.+++++++|.+....++
T Consensus 74 ~~~i~~~~q~~~~~~~-tv~~~i----------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~ 131 (178)
T cd03247 74 SSLISVLNQRPYLFDT-TLRNNL----------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDP 131 (178)
T ss_pred HhhEEEEccCCeeecc-cHHHhh----------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCH
Confidence 1112233444332221 111211 12233344444433332 467899999977766554
No 258
>COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=98.10 E-value=3.1e-06 Score=75.21 Aligned_cols=85 Identities=15% Similarity=0.224 Sum_probs=55.0
Q ss_pred Cccceeeccccc---------ccc---cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 1 METVIELADDFA---------DDL---SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 1 m~~~i~~~~~~~---------~~~---~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
|+.++|++|++| +.+ ..+.+ |++..+.-.++|.|..||||||+|+.|+....+..-.++--|.
T Consensus 1 ~~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~v-----SFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~ 75 (267)
T COG4167 1 IETLLEVRNLSKTFRYRTGLFRRQTVEAVKPV-----SFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDH 75 (267)
T ss_pred Ccchhhhhhhhhhhhhhhhhhhhhhhhcccce-----EEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCc
Confidence 678999999977 222 34444 7777788899999999999999999999887653323332232
Q ss_pred CCCCCCHHHHhhccCccCCCCc
Q 035513 69 FYHSLTDEKLQNLHDYNFDHPD 90 (473)
Q Consensus 69 ~~~~~~~~~~~~~~~~~f~~~~ 90 (473)
...--....+.+..+..|.+|.
T Consensus 76 ~L~~~Dy~~R~k~IRMiFQDpn 97 (267)
T COG4167 76 PLHFGDYSFRSKRIRMIFQDPN 97 (267)
T ss_pred cccccchHhhhhheeeeecCCc
Confidence 2211122234444445565554
No 259
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=98.10 E-value=4e-06 Score=78.94 Aligned_cols=48 Identities=19% Similarity=0.349 Sum_probs=42.1
Q ss_pred eeeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ . ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~il~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDL-----SLNVYKGEIFGLLGHNGAGKTTTLKMLTGELR 53 (220)
T ss_pred CEEEeeEEEeCCCCceeecce-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888865 3 5689999 99999999999999999999999999998764
No 260
>PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional
Probab=98.10 E-value=3.8e-06 Score=89.34 Aligned_cols=52 Identities=15% Similarity=0.154 Sum_probs=46.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 8 ~~~~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~ 62 (510)
T PRK15439 8 APPLLCARSISKQYSGVEVLKGI-----DFTLHAGEVHALLGGNGAGKSTLMKIIAGIVP 62 (510)
T ss_pred CCceEEEEeEEEEeCCceeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 456899999976 44689999 99999999999999999999999999998764
No 261
>COG3709 Uncharacterized component of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=98.10 E-value=8.5e-05 Score=64.79 Aligned_cols=169 Identities=18% Similarity=0.298 Sum_probs=91.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCC-CEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQ-RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~-~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
.+.+|.+.|||||||-|+.......+... .+.++.- ++ +.. ..-+.. +-++.+...+.+ .-.+|..
T Consensus 4 ~G~lI~vvGPSGAGKDtl~~~ar~~l~~~~r~~fvrR--vI---TRp--a~ag~E---dH~avs~~eF~~---~a~~g~F 70 (192)
T COG3709 4 MGRLIAVVGPSGAGKDTLLDAARARLAGRPRLHFVRR--VI---TRP--ADAGGE---DHDALSEAEFNT---RAGQGAF 70 (192)
T ss_pred CceEEEEECCCCCChHHHHHHHHHHhccCCceEEEEE--Ee---ccc--CCCCcc---cccccCHHHHHH---HhhcCce
Confidence 46789999999999999999999888642 2444310 00 000 000000 001111111111 0111111
Q ss_pred eeccccccccccc-----cccccccCCCcEEEEecccccCChhhhhcc-C-eEEEEecChhHHHHHhhhccccccCCChH
Q 035513 110 VSIPDYDFKSHKR-----KQQSRLINPSDVFILEGILVLHDPRVRDLM-S-MKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 110 i~~p~~~~~~~~~-----~~~~~~~~~~~viIlEG~~~l~~~~~~~~~-D-l~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
. +++..+.. .+....+....++++.|.-+.. |..+..+ + +++.+.+++++..+|+.+|.. ++.+
T Consensus 71 A----lsWqAhGL~Ygip~eId~wl~~G~vvl~NgSRa~L-p~arrry~~Llvv~ita~p~VLaqRL~~RGR----Es~e 141 (192)
T COG3709 71 A----LSWQAHGLSYGIPAEIDLWLAAGDVVLVNGSRAVL-PQARRRYPQLLVVCITASPEVLAQRLAERGR----ESRE 141 (192)
T ss_pred e----EEehhcCccccCchhHHHHHhCCCEEEEeccHhhh-HHHHHhhhcceeEEEecCHHHHHHHHHHhcc----CCHH
Confidence 0 11111111 0111224567888888876543 4444333 3 688999999999999999853 3556
Q ss_pred HHHHHHHhhcccchhhhcCCcccccc-EecccCCCchhhhhhhhheee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~~~~~~i~~i~~~I~ 229 (473)
++...+..... | .....| ..|+|++..+.+.+.++..+.
T Consensus 142 eI~aRL~R~a~--~------~~~~~dv~~idNsG~l~~ag~~ll~~l~ 181 (192)
T COG3709 142 EILARLARAAR--Y------TAGPGDVTTIDNSGELEDAGERLLALLH 181 (192)
T ss_pred HHHHHHHhhcc--c------ccCCCCeEEEcCCCcHHHHHHHHHHHHH
Confidence 66666554332 1 012334 578888888887777776654
No 262
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=98.09 E-value=4.2e-06 Score=78.26 Aligned_cols=47 Identities=23% Similarity=0.283 Sum_probs=39.9
Q ss_pred eeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 6 ELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 6 ~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|+++ . ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~~~~~~~il~~v-----s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 52 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDI-----SLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLG 52 (211)
T ss_pred CceeEEEecCCCCeeeecce-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567754 3 4689999 99999999999999999999999999998764
No 263
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=98.09 E-value=6.5e-06 Score=78.16 Aligned_cols=48 Identities=21% Similarity=0.344 Sum_probs=42.1
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (232)
T cd03218 1 LRAENLSKRYGKRKVVNGV-----SLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVK 51 (232)
T ss_pred CeEEEEEEEeCCEEeeccc-----eeEecCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 45689999 99999999999999999999999999997754
No 264
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=98.09 E-value=3.9e-06 Score=78.88 Aligned_cols=49 Identities=24% Similarity=0.287 Sum_probs=42.8
Q ss_pred ceeeccccc---cc----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DD----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +. ..++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGV-----SFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLE 56 (218)
T ss_pred CeEEEEEEEecCCCCccceeecce-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 478999966 23 589999 99999999999999999999999999998764
No 265
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=98.09 E-value=3.3e-06 Score=79.26 Aligned_cols=41 Identities=27% Similarity=0.321 Sum_probs=34.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
...++|++.|+.|||||++|+.||+.++-..++-+.+|+.|
T Consensus 69 enSkvI~VeGnI~sGK~klAKelAe~Lgf~hfP~~~~d~iy 109 (393)
T KOG3877|consen 69 ENSKVIVVEGNIGSGKTKLAKELAEQLGFVHFPEFRMDDIY 109 (393)
T ss_pred ccceEEEEeCCcccCchhHHHHHHHHhCCccccccccccee
Confidence 34589999999999999999999999985555556677766
No 266
>TIGR01367 pyrE_Therm orotate phosphoribosyltransferase, Thermus family. This model represents a distinct clade of orotate phosphoribosyltransferases. Members include the experimentally determined example from Thermus aquaticus and additional examples from Caulobacter crescentus, Helicobacter pylori, Mesorhizobium loti, and related species.
Probab=98.09 E-value=2.1e-05 Score=72.07 Aligned_cols=88 Identities=17% Similarity=0.220 Sum_probs=63.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVP 393 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~ 393 (473)
++|++.++|.++...+.+.+. .+ ++...|.... .....-+...+|++|+|+|++++||+|+..+++.|+++|+
T Consensus 61 ~Ivgi~~gGi~~A~~la~~L~-~~--~i~~~k~~~~---~~~~~~~~l~~G~~VLIVDDIi~TG~Tl~~a~~~l~~~Ga- 133 (187)
T TIGR01367 61 FIVGPAMGGVILGYEVARQLS-VR--SIFAEREGGG---MKLRRGFAVKPGEKFVAVEDVVTTGGSLLEAIRAIEGQGG- 133 (187)
T ss_pred EEEEEccCcHHHHHHHHHHhC-CC--eEEEEEeCCc---EEEeecccCCCCCEEEEEEeeecchHHHHHHHHHHHHcCC-
Confidence 567888999999988888763 22 4445543321 1111111123689999999999999999999999999998
Q ss_pred CCcEEEEEEEeCHHHH
Q 035513 394 ESNIIFLNLIAAPQGI 409 (473)
Q Consensus 394 ~~~i~~~~~~~~~~g~ 409 (473)
+.+.+++++...+|-
T Consensus 134 -~vv~~~vlid~~~~~ 148 (187)
T TIGR01367 134 -QVVGLACIIDRSQGG 148 (187)
T ss_pred -eEEEEEEEEECcCCC
Confidence 567888888877654
No 267
>PRK02277 orotate phosphoribosyltransferase-like protein; Provisional
Probab=98.09 E-value=2.4e-05 Score=72.46 Aligned_cols=93 Identities=17% Similarity=0.322 Sum_probs=62.6
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcC---CCC--ceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHH
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREG---NSG--RQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLIL 388 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~---~~~--~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~ 388 (473)
++|++-++|.++...+.+.+. .+... +.+.. ... ....+......++|++|+|+|++++||+|+.++++.|+
T Consensus 88 ~Ivgi~~gG~~~A~~lA~~L~-~~~~~--~~~~k~~~~~~~~~~~~~~~~~~~~~gk~VlIVDDVitTG~Tl~~ai~~l~ 164 (200)
T PRK02277 88 VVVGIAKSGVPLATLVADELG-KDLAI--YHPKKWDHGEGEKKTGSFSRNFASVEGKRCVIVDDVITSGTTMKETIEYLK 164 (200)
T ss_pred EEEeeccCCHHHHHHHHHHhC-CCcEE--EecccccccccccccceeccccccCCcCEEEEEeeccCchHHHHHHHHHHH
Confidence 567788899999988888774 23222 22211 111 11222222235789999999999999999999999999
Q ss_pred hcCCCCCcEEEEEEEeCHHHHHHH
Q 035513 389 SKGVPESNIIFLNLIAAPQGIHAI 412 (473)
Q Consensus 389 ~~g~~~~~i~~~~~~~~~~g~~~~ 412 (473)
+.|+ +.+.+++++.. .|.+++
T Consensus 165 ~~Ga--~~v~v~vlvdk-~g~~~~ 185 (200)
T PRK02277 165 EHGG--KPVAVVVLIDK-SGIDEI 185 (200)
T ss_pred HcCC--EEEEEEEEEEC-cchhhh
Confidence 9998 45556555554 576654
No 268
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.09 E-value=1.1e-05 Score=84.95 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=34.6
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
....++.+|.+.|++||||||+|+.+++..+ +.+++.|.+
T Consensus 364 ~~~~~p~LVil~G~pGSGKST~A~~l~~~~g---~~~vn~D~l 403 (526)
T TIGR01663 364 LDDAPCEMVIAVGFPGAGKSHFCKKFFQPAG---YKHVNADTL 403 (526)
T ss_pred cCCCCceEEEEECCCCCCHHHHHHHHHHHcC---CeEECcHHH
Confidence 3456789999999999999999999998765 889998865
No 269
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=98.08 E-value=4.6e-05 Score=75.94 Aligned_cols=99 Identities=11% Similarity=0.192 Sum_probs=70.8
Q ss_pred eeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 312 RLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++++|+.=++|......+.+.+. ++.+.+--.|...+... -..+..+++|++|+|+|+|+.||+|+.+|.+.|+++|
T Consensus 169 ~~vvVsPD~gg~~rA~~lA~~lg-~~~~vi~K~r~~~~~~~--~~~~~gdv~Gk~VIIVDDIi~TG~Tl~~aa~~Lk~~G 245 (332)
T PRK00553 169 DLVVVSPDYGGVKRARLIAESLE-LPLAIIDKRRPKHNVAE--SINVLGEVKNKNCLIVDDMIDTGGTVIAAAKLLKKQK 245 (332)
T ss_pred CeEEEEECCCcHHHHHHHHHHhC-CCEEEEEEecCCcceEe--eEEeeccCCCCEEEEEeccccchHHHHHHHHHHHHcC
Confidence 45677777788888888887763 34333322232222112 1223457899999999999999999999999999999
Q ss_pred CCCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 392 VPESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 392 ~~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
+ ++|.+++ -+-+..+.+++.++
T Consensus 246 A--~~V~~~atHglf~~~a~~~l~~~ 269 (332)
T PRK00553 246 A--KKVCVMATHGLFNKNAIQLFDEA 269 (332)
T ss_pred C--cEEEEEEEeeecCchHHHHHHhc
Confidence 8 6777777 35567888898765
No 270
>PRK14259 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.08 E-value=6.9e-06 Score=79.92 Aligned_cols=50 Identities=16% Similarity=0.117 Sum_probs=44.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 12 ~~l~i~nl~~~~~~~~il~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 64 (269)
T PRK14259 12 IIISLQNVTISYGTFEAVKNV-----FCDIPRGKVTALIGPSGCGKSTVLRSLNRMND 64 (269)
T ss_pred ceEEEEeEEEEECCEEEEcce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4799999976 35689999 99999999999999999999999999998653
No 271
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=98.08 E-value=5.2e-06 Score=77.74 Aligned_cols=48 Identities=21% Similarity=0.225 Sum_probs=42.0
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ .+..++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03301 1 VELENVTKRFGNVTALDDL-----NLDIADGEFVVLLGPSGCGKTTTLRMIAGLEE 51 (213)
T ss_pred CEEEeeEEEECCeeeeece-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 44689999 99999999999999999999999999998764
No 272
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.08 E-value=9.9e-06 Score=75.14 Aligned_cols=46 Identities=24% Similarity=0.465 Sum_probs=34.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLT 74 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~ 74 (473)
..+|.++.+.|++||||||+++.+...+...++.+|+.|+|-..+.
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~p 57 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFHP 57 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGST
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhcc
Confidence 4678999999999999999999999987334689999999875443
No 273
>PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=5.5e-06 Score=83.47 Aligned_cols=49 Identities=24% Similarity=0.280 Sum_probs=43.3
Q ss_pred ceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ + ...++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~v-----sl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~ 56 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNV-----SLHIPAGEIFGVIGASGAGKSTLIRCINLLER 56 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 488999966 3 3589999 99999999999999999999999999998764
No 274
>PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional
Probab=98.08 E-value=6.9e-06 Score=86.99 Aligned_cols=51 Identities=18% Similarity=0.282 Sum_probs=45.3
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ +...|+++ +++...+.+++|.|++|||||||.+.|+..+.
T Consensus 1 m~-~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~ 54 (490)
T PRK10938 1 MS-SLQISQGTFRLSDTKTLQLP-----SLTLNAGDSWAFVGANGSGKSALARALAGELP 54 (490)
T ss_pred Cc-eEEEEeEEEEcCCeeecccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 53 799999976 34689999 99999999999999999999999999998764
No 275
>PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=5.5e-06 Score=81.04 Aligned_cols=52 Identities=25% Similarity=0.335 Sum_probs=45.7
Q ss_pred Cccceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ + ...|+++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (279)
T PRK13650 1 MSNIIEVKNLTFKYKEDQEKYTLNDV-----SFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLE 58 (279)
T ss_pred CCceEEEEeEEEEcCCCCcCeeeeee-----EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 667899999976 2 2389999 99999999999999999999999999998764
No 276
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.07 E-value=7.5e-06 Score=83.80 Aligned_cols=60 Identities=17% Similarity=0.349 Sum_probs=47.6
Q ss_pred Cccceeeccccc--ccc-------------------------cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHH
Q 035513 1 METVIELADDFA--DDL-------------------------SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMII 53 (473)
Q Consensus 1 m~~~i~~~~~~~--~~~-------------------------~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La 53 (473)
|..+|+++|+.+ +.. .++++ ++..+.+.+++|.|++|||||||.+.|+
T Consensus 1 ~~~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~i-----sl~i~~Gei~~LvG~NGsGKSTLLr~I~ 75 (400)
T PRK10070 1 MAIKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDA-----SLAIEEGEIFVIMGLSGSGKSTMVRLLN 75 (400)
T ss_pred CCcEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeE-----EEEEcCCCEEEEECCCCchHHHHHHHHH
Confidence 777899999977 221 57888 8899999999999999999999999999
Q ss_pred HHhCC-CCEEEEe
Q 035513 54 SRLRD-QRVVLVN 65 (473)
Q Consensus 54 ~~l~~-~~~~~is 65 (473)
..+.. .|-..++
T Consensus 76 Gl~~p~sG~I~i~ 88 (400)
T PRK10070 76 RLIEPTRGQVLID 88 (400)
T ss_pred cCCCCCCCEEEEC
Confidence 87642 3444443
No 277
>PLN02772 guanylate kinase
Probab=98.06 E-value=1.5e-05 Score=80.05 Aligned_cols=176 Identities=15% Similarity=0.131 Sum_probs=82.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHHh---hccCccCCCCccccHHHHHHHHHHhh
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQ---NLHDYNFDHPDAFDTELLLSDMEKLK 105 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~~---~~~~~~f~~~~~~d~~~l~~~l~~l~ 105 (473)
.+.++|.|+||||||||||.+.|.+.++. .++.+-+ .++..+. +...|.|...+. +...+.
T Consensus 133 ~~~k~iVlsGPSGvGKsTL~~~L~~~~p~~~~~~vsh-------TTR~pR~gE~dG~dY~Fvs~ee--------Fe~~i~ 197 (398)
T PLN02772 133 NAEKPIVISGPSGVGKGTLISMLMKEFPSMFGFSVSH-------TTRAPREMEKDGVHYHFTERSV--------MEKEIK 197 (398)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhhhccccccccccc-------cCCCCcccccCCceEeeCCHHH--------HHHHHH
Confidence 35579999999999999999999887541 1111111 1111111 112344543222 222334
Q ss_pred cCCceecccccccccccccc--ccccCCCcEEEEecccccCChhhhh-ccC-eEEEEec-ChhHHHHHhhhccccccCCC
Q 035513 106 HGQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRD-LMS-MKIFVDT-DSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~-~~D-l~I~L~~-~~e~~~~R~~~R~~~~~~~~ 180 (473)
.+..+.+..|....+..... ...+.....+|+|--.... ..++. .++ ..||+.. +.++..+|+..|.. . +
T Consensus 198 ~g~FlE~~e~~Gn~YGTsk~~V~~vl~~Gk~vILdLD~qGa-r~Lr~~~l~~v~IFI~PPSlEeLe~RL~~RGt-e---s 272 (398)
T PLN02772 198 DGKFLEFASVHGNLYGTSIEAVEVVTDSGKRCILDIDVQGA-RSVRASSLEAIFIFICPPSMEELEKRLRARGT-E---T 272 (398)
T ss_pred hCccceeeeecCccccccHHHHHHHHHhCCcEEEeCCHHHH-HHHHHhcCCeEEEEEeCCCHHHHHHHHHhcCC-C---C
Confidence 44444444343332222111 1122345566655111000 11221 123 5566654 46777777777743 1 2
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+.+..++..... ..+. ..+....|++|.|+ +.+++.+++.+.|.
T Consensus 273 eE~I~kRL~~A~~-Ei~~--~~~~~~fD~vIvND-dLe~A~~~L~~iL~ 317 (398)
T PLN02772 273 EEQIQKRLRNAEA-ELEQ--GKSSGIFDHILYND-NLEECYKNLKKLLG 317 (398)
T ss_pred HHHHHHHHHHHHH-HHhh--ccccCCCCEEEECC-CHHHHHHHHHHHHh
Confidence 3333333222110 0000 00134579999888 77777777766553
No 278
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=98.06 E-value=6.2e-06 Score=81.59 Aligned_cols=49 Identities=18% Similarity=0.314 Sum_probs=44.1
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ ....++++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~i-----s~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~ 53 (301)
T TIGR03522 2 SIRVSSLTKLYGTQNALDEV-----SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLP 53 (301)
T ss_pred EEEEEEEEEEECCEEEEEEe-----EEEEeCCeEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999977 45689999 99999999999999999999999999998754
No 279
>COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.5e-05 Score=71.83 Aligned_cols=134 Identities=15% Similarity=0.216 Sum_probs=79.9
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecCCCCC--------
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQDSFYH-------- 71 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D~~~~-------- 71 (473)
+|+++|++| .+.+++++ |...+++.+-.|.||.|+|||||....++.++ +.|-..++.-++-.
T Consensus 1 MI~i~nv~K~y~~~~vl~~i-----sl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~s~~LAk 75 (252)
T COG4604 1 MITIENVSKSYGTKVVLDDV-----SLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTPSKELAK 75 (252)
T ss_pred CeeehhhhHhhCCEEeeccc-----eeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCChHHHHH
Confidence 589999988 56799999 99999999999999999999999999988775 24444444322221
Q ss_pred -------------CCCHHHHhhccCccC--CCCccccHHHHHHHHHHhhcC--Cceecccccccccccccccc-ccCCCc
Q 035513 72 -------------SLTDEKLQNLHDYNF--DHPDAFDTELLLSDMEKLKHG--QAVSIPDYDFKSHKRKQQSR-LINPSD 133 (473)
Q Consensus 72 -------------~~~~~~~~~~~~~~f--~~~~~~d~~~l~~~l~~l~~g--~~i~~p~~~~~~~~~~~~~~-~~~~~~ 133 (473)
.++.+..-.+++|.+ +.+...|+....+.++.+.-. +.-.+...+...++|...+. ...+.+
T Consensus 76 ~lSILkQ~N~i~~rlTV~dLv~FGRfPYSqGRlt~eD~~~I~~aieyl~L~~l~dryLd~LSGGQrQRAfIAMVlaQdTd 155 (252)
T COG4604 76 KLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYLHLEDLSDRYLDELSGGQRQRAFIAMVLAQDTD 155 (252)
T ss_pred HHHHHHhhchhhheeEHHHHhhcCCCcccCCCCchHHHHHHHHHHHHhcccchHHHhHHhcccchhhhhhhheeeeccCc
Confidence 111112233444443 335566666666666543321 11111222333333322221 245678
Q ss_pred EEEEecccc
Q 035513 134 VFILEGILV 142 (473)
Q Consensus 134 viIlEG~~~ 142 (473)
++++|.+..
T Consensus 156 yvlLDEPLN 164 (252)
T COG4604 156 YVLLDEPLN 164 (252)
T ss_pred EEEecCccc
Confidence 888885543
No 280
>COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=98.06 E-value=1.4e-05 Score=75.77 Aligned_cols=51 Identities=18% Similarity=0.235 Sum_probs=45.2
Q ss_pred cceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 3 TVIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 3 ~~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+|+++|+++ . ...++++ +...++...++|.|++||||||+.+.|+..+.+
T Consensus 2 ~~i~~~~l~~~y~~~~~~l~~v-----~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p 56 (235)
T COG1122 2 RMIEAENLSFRYPGRKAALKDV-----SLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKP 56 (235)
T ss_pred ceEEEEEEEEEcCCCceeeeee-----EEEECCCCEEEEECCCCCCHHHHHHHHcCcCcC
Confidence 5899999976 2 3799999 999999999999999999999999999987764
No 281
>PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.05 E-value=7.5e-06 Score=80.29 Aligned_cols=60 Identities=20% Similarity=0.323 Sum_probs=48.6
Q ss_pred Cc-cceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 1 ME-TVIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 1 m~-~~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
|+ .+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.. .|-..++
T Consensus 1 ~~~~~l~~~~l~~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~ 66 (283)
T PRK13636 1 MEDYILKVEELNYNYSDGTHALKGI-----NINIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFD 66 (283)
T ss_pred CCCceEEEEeEEEEeCCCCeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEEC
Confidence 53 5899999976 24599999 999999999999999999999999999987642 3434443
No 282
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=98.05 E-value=2.5e-06 Score=82.63 Aligned_cols=52 Identities=17% Similarity=0.298 Sum_probs=47.1
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~nl~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (262)
T PRK09984 1 MQTIIRVEKLAKTFNQHQALHAV-----DLNIHHGEMVALLGPSGSGKSTLLRHLSGLIT 55 (262)
T ss_pred CCcEEEEeeEEEEeCCeEEEecc-----eEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 778999999976 45689999 99999999999999999999999999998764
No 283
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=98.05 E-value=7.7e-06 Score=79.15 Aligned_cols=49 Identities=14% Similarity=0.136 Sum_probs=44.0
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..|+++|+++ +...|+++ ++..+.+.+++|.|++|||||||.+.|+..+
T Consensus 12 ~~l~~~~l~~~~~~~~il~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 12 SKIQVRNLNFYYGKFHALKNI-----NLDIAKNQVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred ceEEEEEEEEEeCCeEEeece-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 5799999976 34589999 9999999999999999999999999999875
No 284
>cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=6.4e-06 Score=78.82 Aligned_cols=48 Identities=21% Similarity=0.256 Sum_probs=41.6
Q ss_pred eeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (242)
T cd03295 1 IEFENVTKRYGGGKKAVNNL-----NLEIAKGEFLVLIGPSGSGKTTTMKMINRLIE 52 (242)
T ss_pred CEEEEEEEEeCCcceEeeee-----EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788865 3 4589999 99999999999999999999999999998764
No 285
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=98.04 E-value=9e-06 Score=76.60 Aligned_cols=49 Identities=12% Similarity=0.217 Sum_probs=42.5
Q ss_pred ceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~i-----sl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~ 56 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGV-----SLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDN 56 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478899966 2 2589999 99999999999999999999999999998754
No 286
>TIGR00336 pyrE orotate phosphoribosyltransferase. The conserved Lys (K) residue at position 101 of the seed alignment has been proposed as the active site for the enzyme.
Probab=98.04 E-value=3.9e-05 Score=69.48 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=69.4
Q ss_pred eEEEeeccCchhHHHHHhhcCC--ceeeEEEEEEcCCC-CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 314 CGISIIRSGESMENALRACCKG--IKIGKILIHREGNS-GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~--a~~g~i~~~r~~~~-~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
++|.+-++|.++...+...+.. ..+-.+.+.+.... ....+. .....+|++|+|+|++++||+|+..|++.|++.
T Consensus 57 ~Ivg~~~gG~~~A~~la~~l~~~~~~~~~~~~rk~~k~~g~~~~~--~g~~~~g~~VlIVDDvi~TG~Tl~~a~~~l~~~ 134 (173)
T TIGR00336 57 VIAGPALGGIPIATAVSVKLAKPGGDIPLCFNRKEAKDHGEGGNI--EGELLEGDKVVVVEDVITTGTSILEAVEIIQAA 134 (173)
T ss_pred EEEccccChHHHHHHHHHHhcCcCCCceEEEEcCCcccCCCCCce--ecCCCCCCEEEEEeccccChHHHHHHHHHHHHc
Confidence 4666778999998888888742 22223333333211 111111 123347899999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCHH--HHHHHHHhCCCcEEEE
Q 035513 391 GVPESNIIFLNLIAAPQ--GIHAICKRFPKIKIVT 423 (473)
Q Consensus 391 g~~~~~i~~~~~~~~~~--g~~~~~~~~p~v~i~~ 423 (473)
|+ +-+-+++++.-.+ |.+++.+.+ ++++++
T Consensus 135 Ga--~v~~~~vlvdr~~~~~~~~l~~~~-gv~~~s 166 (173)
T TIGR00336 135 GG--QVAGVIIAVDRQERSAGQEFEKEY-GLPVIS 166 (173)
T ss_pred CC--eEEEEEEEEecCchhHHHHHHHhc-CCeEEE
Confidence 97 4566667776655 777776543 465554
No 287
>PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.04 E-value=7.2e-06 Score=80.17 Aligned_cols=52 Identities=17% Similarity=0.284 Sum_probs=45.7
Q ss_pred Cccceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 m~~~l~~~~l~~~~~~~~~~~~l~~v-----~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (277)
T PRK13642 1 MNKILEVENLVFKYEKESDVNQLNGV-----SFSITKGEWVSIIGQNGSGKSTTARLIDGLFE 58 (277)
T ss_pred CCceEEEEEEEEEcCCCCcCeeeeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 777999999976 2 1379999 99999999999999999999999999997764
No 288
>TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein. This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin.
Probab=98.04 E-value=4.4e-06 Score=92.52 Aligned_cols=49 Identities=16% Similarity=0.326 Sum_probs=43.7
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|++. .+..|+++ |+..+++..|+|.|++||||||+++.|+..+.
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~i-----sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 530 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENF-----SLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQ 530 (710)
T ss_pred eEEEEEEEEecCCCCCCcccce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999965 24589999 99999999999999999999999999998775
No 289
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=98.04 E-value=7.7e-06 Score=87.82 Aligned_cols=49 Identities=20% Similarity=0.334 Sum_probs=43.2
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ +...|+++ +...+++..++|.|++||||||+++.|+..+.
T Consensus 322 ~i~~~~v~f~y~~~~~~l~~i-----~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 374 (547)
T PRK10522 322 TLELRNVTFAYQDNGFSVGPI-----NLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQ 374 (547)
T ss_pred eEEEEEEEEEeCCCCeEEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999965 24589999 99999999999999999999999999998774
No 290
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=98.04 E-value=4.5e-06 Score=77.62 Aligned_cols=49 Identities=16% Similarity=0.076 Sum_probs=42.4
Q ss_pred ceeeccccc-------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+.++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDF-----SGVVKPGEMVLVLGRPGSGCSTLLKALANRTE 58 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeE-----EEEECCCcEEEEECCCCCCHHHHHHHhcccCC
Confidence 567889976 23578888 89999999999999999999999999998765
No 291
>PRK14249 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.03 E-value=3.9e-06 Score=80.77 Aligned_cols=52 Identities=15% Similarity=0.187 Sum_probs=47.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++|+++ ....++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~il~~~-----s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14249 1 MDPKIKIRGVNFFYHKHQVLKNI-----NMDFPERQITAIIGPSGCGKSTLLRALNRMND 55 (251)
T ss_pred CCceEEEEEEEEEECCeeEecce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 888999999976 34589999 99999999999999999999999999998765
No 292
>TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein. Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif
Probab=98.02 E-value=4.7e-06 Score=91.97 Aligned_cols=49 Identities=18% Similarity=0.278 Sum_probs=43.6
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. ++..|+++ |...+++..|+|.|+|||||||+++.|+..+.
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~i-----sl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~ 504 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDV-----SLQIEPGEFVAIVGPSGSGKSTLLRLLLGFET 504 (686)
T ss_pred eEEEEEEEEEcCCCCccceeee-----EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999965 24589999 99999999999999999999999999998775
No 293
>PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=9.4e-06 Score=79.35 Aligned_cols=51 Identities=22% Similarity=0.219 Sum_probs=44.4
Q ss_pred ccceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 55 (277)
T PRK13652 1 MHLIETRDLCYSYSGSKEALNNI-----NFIAPRNSRIAVIGPNGAGKSTLFRHFNGILK 55 (277)
T ss_pred CceEEEEEEEEEeCCCCceeeEe-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 15899999976 2 3489999 99999999999999999999999999998764
No 294
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=98.02 E-value=3.6e-05 Score=73.97 Aligned_cols=63 Identities=19% Similarity=0.315 Sum_probs=37.9
Q ss_pred eEEEEecChhHHHHHhhh-cccc--cc-CCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhh
Q 035513 154 MKIFVDTDSDVRLSRRIQ-RDTV--ER-GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIV 225 (473)
Q Consensus 154 l~I~L~~~~e~~~~R~~~-R~~~--~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~ 225 (473)
-++||+|+.++.+.|... |... .. +...+.+..+ ...+.|.+..||+|||.+..+...+...+
T Consensus 84 ~ilFLdA~d~~LirRy~eTRR~HPL~~~~~~le~I~~E---------r~~L~~lr~~Ad~vIDTs~l~~~~Lr~~i 150 (284)
T PF03668_consen 84 RILFLDASDEVLIRRYSETRRRHPLSSDGSLLEAIEKE---------RELLEPLRERADLVIDTSNLSVHQLRERI 150 (284)
T ss_pred EEEEEECChHHHHHHHHhccCCCCCCCCCCcHHHHHHH---------HHHHHHHHHhCCEEEECCCCCHHHHHHHH
Confidence 489999999999999864 3221 11 2223333221 12233457899999998855555544333
No 295
>PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.02 E-value=1.1e-05 Score=78.62 Aligned_cols=50 Identities=16% Similarity=0.308 Sum_probs=43.9
Q ss_pred cceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+.+ . ...++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~i~~l~~~~~~~~~~~l~~i-----sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 60 (269)
T PRK13648 6 SIIVFKNVSFQYQSDASFTLKDV-----SFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEK 60 (269)
T ss_pred ceEEEEEEEEEcCCCCCcceeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999976 2 2479999 99999999999999999999999999998764
No 296
>PRK14256 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.02 E-value=3.3e-06 Score=81.28 Aligned_cols=51 Identities=20% Similarity=0.244 Sum_probs=46.4
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|+.+|+++|+++ ....++++ ++..+.+.+++|.|++|||||||++.|+..+
T Consensus 1 ~~~~l~~~nl~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 54 (252)
T PRK14256 1 MNNKVKLEQLNVHFGKNHAVKDV-----SMDFPENSVTAIIGPSGCGKSTVLRSINRMH 54 (252)
T ss_pred CCcEEEEEEEEEEeCCeeEEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 778999999976 45689999 9999999999999999999999999999875
No 297
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=98.01 E-value=5.9e-06 Score=76.31 Aligned_cols=129 Identities=13% Similarity=0.117 Sum_probs=73.4
Q ss_pred ceeeccccc---c------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh--CC-CCEEEEecCCCCC
Q 035513 4 VIELADDFA---D------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL--RD-QRVVLVNQDSFYH 71 (473)
Q Consensus 4 ~i~~~~~~~---~------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l--~~-~~~~~is~D~~~~ 71 (473)
.|+++|+++ . ...++++ ++..+++.+++|.|++|||||||.+.|+..+ .. .|-..++..+..
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~-----~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~- 76 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNV-----SGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLD- 76 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecc-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCc-
Confidence 478899966 2 4689999 9999999999999999999999999999876 42 233333322221
Q ss_pred CCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccc-cCCCcEEEEecccccCCh
Q 035513 72 SLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 72 ~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
.........+.++.+..+....+.+.+..... . ..++....+++.-++. +.+++++++|.+....++
T Consensus 77 ---~~~~~~~i~~~~q~~~~~~~~t~~~~i~~~~~---~--~~LS~G~~qrv~laral~~~p~illlDEP~~~LD~ 144 (194)
T cd03213 77 ---KRSFRKIIGYVPQDDILHPTLTVRETLMFAAK---L--RGLSGGERKRVSIALELVSNPSLLFLDEPTSGLDS 144 (194)
T ss_pred ---hHhhhheEEEccCcccCCCCCcHHHHHHHHHH---h--ccCCHHHHHHHHHHHHHHcCCCEEEEeCCCcCCCH
Confidence 11111111233433332221112222211100 0 0344444444433333 457899999987766654
No 298
>KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=1.2e-05 Score=82.73 Aligned_cols=58 Identities=17% Similarity=0.308 Sum_probs=47.9
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
-|+++|+.. ....|+++ |+..+++..|+|.|++||||||+.+.|-+-+...|-..|+.
T Consensus 351 ~I~F~dV~f~y~~k~~iL~gv-----sf~I~kGekVaIvG~nGsGKSTilr~LlrF~d~sG~I~IdG 412 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPKRKVLKGV-----SFTIPKGEKVAIVGSNGSGKSTILRLLLRFFDYSGSILIDG 412 (591)
T ss_pred cEEEEeeEEEeCCCCceecce-----eEEecCCCEEEEECCCCCCHHHHHHHHHHHhccCCcEEECC
Confidence 589999944 34499999 99999999999999999999999999998776545444433
No 299
>TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein.
Probab=98.01 E-value=5.9e-06 Score=91.41 Aligned_cols=50 Identities=24% Similarity=0.302 Sum_probs=44.1
Q ss_pred ceeeccccc---c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFA---D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~---~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.|+++|++. + ...|+++ |+..+++..|+|.|+|||||||+++.|...+..
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~i-----sl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p 533 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGL-----TFTLHPGEVVALVGPSGSGKSTVAALLQNLYQP 533 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCc-----eEEEcCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 589999965 1 3589999 999999999999999999999999999988753
No 300
>COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=98.01 E-value=4.4e-06 Score=83.12 Aligned_cols=60 Identities=18% Similarity=0.257 Sum_probs=49.9
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEec
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQ 66 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~ 66 (473)
...|+++|++| +...++++ +...+++.++.+.|||||||||+.+.||..... .|-..+..
T Consensus 3 ~~~l~i~~v~k~yg~~~av~~i-----sl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G 66 (352)
T COG3842 3 KPALEIRNVSKSFGDFTAVDDI-----SLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDG 66 (352)
T ss_pred CceEEEEeeeeecCCeeEEecc-----eeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC
Confidence 46899999988 57799999 999999999999999999999999999976542 34444443
No 301
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=98.00 E-value=6.5e-06 Score=89.11 Aligned_cols=50 Identities=18% Similarity=0.213 Sum_probs=43.7
Q ss_pred ceeeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
-|+++|++. + +..|+++ +...+++..++|.|++|||||||++.|+..+.+
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i-----~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p 395 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNI-----NFKIPAGKTVALVGRSGSGKSTIANLLTRFYDI 395 (582)
T ss_pred eEEEEEEEEecCCCCCccccCc-----eEEeCCCCEEEEECCCCCCHHHHHHHHHhccCC
Confidence 488999965 2 4589999 999999999999999999999999999998753
No 302
>PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=98.00 E-value=8.6e-06 Score=79.34 Aligned_cols=50 Identities=16% Similarity=0.322 Sum_probs=44.0
Q ss_pred cceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~~~nl~~~~~~~~~~il~~i-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 60 (271)
T PRK13632 6 VMIKVENVSFSYPNSENNALKNV-----SFEINEGEYVAILGHNGSGKSTISKILTGLLK 60 (271)
T ss_pred eEEEEEeEEEEcCCCCccceeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4789999966 2 3589999 99999999999999999999999999998764
No 303
>PRK14251 phosphate ABC transporter ATP-binding protein; Provisional
Probab=98.00 E-value=3.7e-06 Score=80.88 Aligned_cols=52 Identities=17% Similarity=0.215 Sum_probs=46.3
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+.+ ....++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~~-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 55 (251)
T PRK14251 1 MENIISAKDVHLSYGNYEALHGI-----SLDFEEKELTALIGPSGCGKSTFLRCLNRMND 55 (251)
T ss_pred CCceEEEEeeEEEECCeeeeeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhhccc
Confidence 777899999966 45689999 99999999999999999999999999998753
No 304
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.99 E-value=7.3e-06 Score=88.80 Aligned_cols=49 Identities=18% Similarity=0.338 Sum_probs=43.1
Q ss_pred ceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|++. . ...|+++ +...+++..|+|.|+||||||||++.|+..+.
T Consensus 334 ~I~~~~vsf~y~~~~~iL~~i-----nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 386 (588)
T PRK13657 334 AVEFDDVSFSYDNSRQGVEDV-----SFEAKPGQTVAIVGPTGAGKSTLINLLQRVFD 386 (588)
T ss_pred eEEEEEEEEEeCCCCceecce-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 488999955 2 4589999 99999999999999999999999999998775
No 305
>PRK10851 sulfate/thiosulfate transporter subunit; Provisional
Probab=97.99 E-value=1.3e-05 Score=81.03 Aligned_cols=49 Identities=22% Similarity=0.264 Sum_probs=43.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~L~i~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~ 53 (353)
T PRK10851 2 SIEIANIKKSFGRTQVLNDI-----SLDIPSGQMVALLGPSGSGKTTLLRIIAGLEH 53 (353)
T ss_pred EEEEEEEEEEeCCeEEEEEe-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999977 34589999 99999999999999999999999999998764
No 306
>COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism]
Probab=97.99 E-value=1.3e-05 Score=72.55 Aligned_cols=57 Identities=23% Similarity=0.359 Sum_probs=46.2
Q ss_pred ceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEe
Q 035513 4 VIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVN 65 (473)
Q Consensus 4 ~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is 65 (473)
+|++.++.| . .+.+.++ ++...++.+.||-|++||||||+.+.|+..+. ..|...++
T Consensus 1 Ml~v~~l~K~y~~~v~AvrdV-----SF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~id 62 (245)
T COG4555 1 MLEVTDLTKSYGSKVQAVRDV-----SFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTID 62 (245)
T ss_pred CeeeeehhhhccCHHhhhhhe-----eEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEe
Confidence 477888877 2 3378888 99999999999999999999999999999875 34555554
No 307
>PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.99 E-value=1.2e-05 Score=78.77 Aligned_cols=51 Identities=18% Similarity=0.249 Sum_probs=45.0
Q ss_pred ccceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ . ...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v-----~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~ 58 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDI-----SFSIPRGSWTALIGHNGSGKSTISKLINGLLL 58 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeE-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcccC
Confidence 46899999976 2 3489999 99999999999999999999999999998774
No 308
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=97.99 E-value=1.1e-05 Score=72.55 Aligned_cols=48 Identities=17% Similarity=0.207 Sum_probs=41.1
Q ss_pred eeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ ++..++++ ++...++.+++|.|++||||||+++.|+..+.
T Consensus 1 i~~~~~~~~~~~~~~~l~~i-----~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (166)
T cd03223 1 IELENLSLATPDGRVLLKDL-----SFEIKPGDRLLITGPSGTGKSSLFRALAGLWP 52 (166)
T ss_pred CEEEEEEEEcCCCCeeeecC-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46778855 24588999 99999999999999999999999999998764
No 309
>PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.98 E-value=8.5e-06 Score=78.58 Aligned_cols=58 Identities=16% Similarity=0.332 Sum_probs=48.1
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLV 64 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~i 64 (473)
+.+|+++|+.+ +...++++ ++....+.+++|.|++|||||||.+.|+..+.. .|...+
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~ 64 (255)
T PRK11300 3 QPLLSVSGLMMRFGGLLAVNNV-----NLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILL 64 (255)
T ss_pred CceEEEeeEEEEECCEEEEEee-----eeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEE
Confidence 35799999976 45689999 999999999999999999999999999987642 344444
No 310
>PRK14261 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.98 E-value=4.4e-06 Score=80.48 Aligned_cols=51 Identities=18% Similarity=0.197 Sum_probs=45.3
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|.++|+++|+++ ....|+++ ++...++.+++|.|++|||||||++.|+..+
T Consensus 3 ~~~~i~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14261 3 MEIILSTKNLNLWYGEKHALYDI-----TISIPKNRVTALIGPSGCGKSTLLRCFNRMN 56 (253)
T ss_pred ccceEEEeeeEEEECCeeeeeee-----EEEECCCcEEEEECCCCCCHHHHHHHHhccc
Confidence 457999999976 45689999 9999999999999999999999999998654
No 311
>TIGR02857 CydD thiol reductant ABC exporter, CydD subunit. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD
Probab=97.98 E-value=6.4e-06 Score=88.11 Aligned_cols=49 Identities=14% Similarity=0.274 Sum_probs=43.4
Q ss_pred ceeeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+++ + +..|+++ +...+++..++|.|++||||||+.+.|+..+.
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i-----~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 373 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPV-----SFTVPPGERVALVGPSGAGKSTLLNLLLGFVD 373 (529)
T ss_pred eEEEEEEEEECCCCCcccccce-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999965 2 3589999 99999999999999999999999999998775
No 312
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=97.98 E-value=3e-05 Score=74.70 Aligned_cols=141 Identities=21% Similarity=0.329 Sum_probs=82.0
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCCCCCCHHHHhh----ccCccCCC-----------
Q 035513 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFYHSLTDEKLQN----LHDYNFDH----------- 88 (473)
Q Consensus 25 ~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~~~~~~~~~~~----~~~~~f~~----------- 88 (473)
++.....+.+.+|.|.||||||||.+.|.+.... .|-..++.++..+ ++.....+ .-...|++
T Consensus 47 ~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G~ilv~g~di~~-~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~ 125 (386)
T COG4175 47 ASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAK-LSAAELRELRRKKISMVFQSFALLPHRTVLE 125 (386)
T ss_pred ceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCceEEECCcchhc-CCHHHHHHHHhhhhhhhhhhhccccchhHhh
Confidence 5888899999999999999999999999876543 5566777776663 33322111 11111221
Q ss_pred -----------CccccHHHHHHHHHHhhc-CCceecc-ccccccccccccccc-cCCCcEEEEecccccCChhhhhcc--
Q 035513 89 -----------PDAFDTELLLSDMEKLKH-GQAVSIP-DYDFKSHKRKQQSRL-INPSDVFILEGILVLHDPRVRDLM-- 152 (473)
Q Consensus 89 -----------~~~~d~~~l~~~l~~l~~-g~~i~~p-~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~~~~~~~-- 152 (473)
|.....+...+.|+...- +-.-.+| ..+....+|+..++. ..++++++.|..|...+|-++..+
T Consensus 126 Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQd 205 (386)
T COG4175 126 NVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQD 205 (386)
T ss_pred hhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHH
Confidence 111111222223322110 1111122 344455566655555 457899999999998888543221
Q ss_pred ----------CeEEEEecChhHHH
Q 035513 153 ----------SMKIFVDTDSDVRL 166 (473)
Q Consensus 153 ----------Dl~I~L~~~~e~~~ 166 (473)
--+||+.=+.++.+
T Consensus 206 eLl~Lq~~l~KTIvFitHDLdEAl 229 (386)
T COG4175 206 ELLELQAKLKKTIVFITHDLDEAL 229 (386)
T ss_pred HHHHHHHHhCCeEEEEecCHHHHH
Confidence 25788887777664
No 313
>PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional
Probab=97.98 E-value=3.8e-06 Score=81.19 Aligned_cols=52 Identities=21% Similarity=0.283 Sum_probs=45.9
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 3 ~~~~l~~~~l~~~~~~~~il~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 57 (258)
T PRK11701 3 DQPLLSVRGLTKLYGPRKGCRDV-----SFDLYPGEVLGIVGESGSGKTTLLNALSARLA 57 (258)
T ss_pred CCceEEEeeeEEEcCCceeeeee-----eEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 356899999976 44689999 99999999999999999999999999998764
No 314
>COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane]
Probab=97.98 E-value=7.6e-06 Score=76.33 Aligned_cols=129 Identities=16% Similarity=0.218 Sum_probs=74.7
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCC---------CCCCCCHHHHhhccC
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDS---------FYHSLTDEKLQNLHD 83 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~---------~~~~~~~~~~~~~~~ 83 (473)
...|+++ ++...++..|||.|.+|||||||.+.|+..+++ .|-..++.+- |-.+++..+.-.+..
T Consensus 40 ~~aL~di-----sf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~v~~li~lg~Gf~pelTGreNi~l~~ 114 (249)
T COG1134 40 FWALKDI-----SFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGKVAPLIELGAGFDPELTGRENIYLRG 114 (249)
T ss_pred EEEecCc-----eEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcceEehhhhcccCCCcccchHHHHHHHH
Confidence 3467788 888999999999999999999999999998864 4444444432 333333332111111
Q ss_pred ccCCCCccccHHHHHHHHHHhhc-CCce--eccccccccccccccccc-cCCCcEEEEecccccCChhh
Q 035513 84 YNFDHPDAFDTELLLSDMEKLKH-GQAV--SIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDPRV 148 (473)
Q Consensus 84 ~~f~~~~~~d~~~l~~~l~~l~~-g~~i--~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~~~ 148 (473)
...+ ...-+.+...+.+.++.+ |..+ .+..|+.....|+.-... ..+++++++|.+.+.-++.+
T Consensus 115 ~~~G-~~~~ei~~~~~eIieFaELG~fi~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavGD~~F 182 (249)
T COG1134 115 LILG-LTRKEIDEKVDEIIEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAF 182 (249)
T ss_pred HHhC-ccHHHHHHHHHHHHHHHHHHHHhhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcCCHHH
Confidence 0000 011111222222222222 2223 334577777777654333 35789999998888777654
No 315
>PRK14253 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=1.3e-05 Score=77.00 Aligned_cols=51 Identities=16% Similarity=0.204 Sum_probs=44.8
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ ++..++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (249)
T PRK14253 1 MNKFNIENLDLFYGENQALKSI-----NLPIPARQVTALIGPSGCGKSTLLRCLNRMND 54 (249)
T ss_pred CCeEEEeccEEEECCeeeeecc-----eEEecCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 03899999976 45689999 99999999999999999999999999998764
No 316
>TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter. This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc.
Probab=97.97 E-value=6.1e-06 Score=91.37 Aligned_cols=49 Identities=18% Similarity=0.232 Sum_probs=43.5
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+++ ++..|+++ ++..+++..|+|.|+|||||||+++.|+..+.
T Consensus 473 ~I~~~~vsf~y~~~~~iL~~i-----sl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~ 525 (708)
T TIGR01193 473 DIVINDVSYSYGYGSNILSDI-----SLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQ 525 (708)
T ss_pred cEEEEEEEEEcCCCCcceece-----eEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 488999965 34689999 99999999999999999999999999998775
No 317
>PRK14270 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.97 E-value=4.9e-06 Score=80.10 Aligned_cols=51 Identities=16% Similarity=0.208 Sum_probs=46.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|.++|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 54 (251)
T PRK14270 1 MKIKMESKNLNLWYGEKQALNDI-----NLPIYENKITALIGPSGCGKSTFLRCLNRMN 54 (251)
T ss_pred CccEEEEEEeEEEECCeeeeece-----eEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 778999999976 45689999 9999999999999999999999999999865
No 318
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=97.96 E-value=6.7e-06 Score=90.85 Aligned_cols=49 Identities=16% Similarity=0.304 Sum_probs=43.3
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. .+..|+++ +...+++..|+|.|++||||||+++.|+..+.
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i-----~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~ 516 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNV-----SLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ 516 (694)
T ss_pred eEEEEEEEEEeCCCCccceeee-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999965 23589999 99999999999999999999999999998775
No 319
>PHA03132 thymidine kinase; Provisional
Probab=97.95 E-value=5.8e-05 Score=79.72 Aligned_cols=34 Identities=24% Similarity=0.278 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is 65 (473)
..++|.|.|..||||||+++.|++.+ +..+.++.
T Consensus 256 ~~~fIv~EGidGsGKTTlik~L~e~l-g~~Vi~t~ 289 (580)
T PHA03132 256 PACFLFLEGVMGVGKTTLLNHMRGIL-GDNVLVFP 289 (580)
T ss_pred ceEEEEEECCCCCCHHHHHHHHHHHh-CCceEEEe
Confidence 36899999999999999999999998 33344443
No 320
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.6e-06 Score=79.63 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++..+++.+++|.|++|||||||++.|+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 54 (250)
T PRK14247 2 NKIEIRDLKVSFGQVEVLDGV-----NLEIPDNTITALMGPSGSGKSTLLRVFNRLIE 54 (250)
T ss_pred ceEEEEeeEEEECCeeeeecc-----eeEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 3799999976 44689999 99999999999999999999999999998764
No 321
>TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT. This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate.
Probab=97.95 E-value=1.4e-05 Score=80.90 Aligned_cols=49 Identities=16% Similarity=0.224 Sum_probs=42.9
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+.+ ....|+++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 5 ~l~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 56 (362)
T TIGR03258 5 GIRIDHLRVAYGANTVLDDL-----SLEIEAGELLALIGKSGCGKTTLLRAIAGFVK 56 (362)
T ss_pred EEEEEEEEEEECCeEEEeee-----EEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999977 34589999 99999999999999999999999999998654
No 322
>PRK14241 phosphate transporter ATP-binding protein; Provisional
Probab=97.95 E-value=5.5e-06 Score=80.09 Aligned_cols=52 Identities=17% Similarity=0.178 Sum_probs=46.3
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...|+++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~i~~v~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~ 55 (258)
T PRK14241 1 MAKRIDVKDLNIYYGSFHAVEDV-----NLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHE 55 (258)
T ss_pred CCccEEEeeEEEEECCEeeeeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 666899999977 45689999 99999999999999999999999999998763
No 323
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=97.95 E-value=6.2e-06 Score=78.04 Aligned_cols=51 Identities=16% Similarity=0.221 Sum_probs=45.2
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+|+++|+.+ +...++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 5 ~~~i~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 58 (225)
T PRK10247 5 SPLLQLQNVGYLAGDAKILNNI-----SFSLRAGEFKLITGPSGCGKSTLLKIVASLIS 58 (225)
T ss_pred CceEEEeccEEeeCCceeeecc-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 45899999976 45689999 99999999999999999999999999997653
No 324
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.94 E-value=1.2e-05 Score=86.76 Aligned_cols=49 Identities=18% Similarity=0.252 Sum_probs=43.3
Q ss_pred ceeeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ + ...|+++ +...+++..++|.|+|||||||+++.|+..+.
T Consensus 338 ~i~~~~v~f~y~~~~~~il~~i-----~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~ 391 (574)
T PRK11160 338 SLTLNNVSFTYPDQPQPVLKGL-----SLQIKAGEKVALLGRTGCGKSTLLQLLTRAWD 391 (574)
T ss_pred eEEEEEEEEECCCCCCcceecc-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999966 2 3489999 99999999999999999999999999998775
No 325
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.94 E-value=1.2e-05 Score=78.40 Aligned_cols=56 Identities=20% Similarity=0.316 Sum_probs=46.4
Q ss_pred eeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 035513 5 IELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65 (473)
Q Consensus 5 i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is 65 (473)
|+++|+++ ....|+++ ++..+.+.+++|.|++|||||||.+.|+..+...|-..++
T Consensus 3 i~~~nls~~~~~~~~~~l~~i-----sl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~~~G~I~i~ 63 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENI-----SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGDIQID 63 (275)
T ss_pred EEEEEEEEEeCCCCCcceece-----EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEEC
Confidence 78899966 24589999 9999999999999999999999999999887644444443
No 326
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=97.93 E-value=1.5e-05 Score=74.21 Aligned_cols=45 Identities=20% Similarity=0.261 Sum_probs=39.0
Q ss_pred ccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 8 ADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 8 ~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+.+ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (206)
T TIGR03608 2 KNISKKFGDKIILDDL-----NLTIEKGKMYAIIGESGSGKSTLLNIIGLLEK 49 (206)
T ss_pred cceEEEECCEEEEece-----EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 56644 35689999 99999999999999999999999999998764
No 327
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA. This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes.
Probab=97.93 E-value=1.1e-05 Score=87.15 Aligned_cols=49 Identities=22% Similarity=0.293 Sum_probs=42.9
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. .+..|+++ +...+++..|+|+|++||||||+.+.|+..+.
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~i-----nl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~ 383 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSI-----SLVIEPGETVALVGRSGSGKSTLVNLIPRFYE 383 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCe-----eEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 488999965 24479999 99999999999999999999999999998875
No 328
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.93 E-value=1.3e-05 Score=75.61 Aligned_cols=48 Identities=21% Similarity=0.288 Sum_probs=42.0
Q ss_pred eeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ . ...++++ ++..+++.+++|.|++|||||||++.|+..+.
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i-----~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 55 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNI-----SFSIKPGEKVGIVGRTGSGKSSLLLALFRLVE 55 (221)
T ss_pred EEEEEEEEecCCCCcccccce-----EEEECCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 78899966 2 3589999 99999999999999999999999999997654
No 329
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.93 E-value=5.9e-06 Score=77.12 Aligned_cols=49 Identities=20% Similarity=0.220 Sum_probs=43.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (207)
T PRK13539 2 MLEGEDLACVRGGRVLFSGL-----SFTLAAGEALVLTGPNGSGKTTLLRLIAGLLP 53 (207)
T ss_pred EEEEEeEEEEECCeEEEece-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 699999976 44589999 99999999999999999999999999998653
No 330
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=97.93 E-value=6.2e-06 Score=75.21 Aligned_cols=54 Identities=17% Similarity=0.314 Sum_probs=42.9
Q ss_pred eeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 035513 6 ELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLV 64 (473)
Q Consensus 6 ~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~i 64 (473)
|++|+.+ ....++++ ++...++.+++|.|++||||||+.+.|+..+.. .|-..+
T Consensus 1 ~~~~l~~~~~~~~~l~~~-----~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~ 58 (180)
T cd03214 1 EVENLSVGYGGRTVLDDL-----SLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58 (180)
T ss_pred CeeEEEEEECCeeeEeee-----EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE
Confidence 4677755 34589999 999999999999999999999999999987642 344444
No 331
>TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein.
Probab=97.93 E-value=1.6e-05 Score=75.77 Aligned_cols=48 Identities=21% Similarity=0.272 Sum_probs=41.6
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 i~i~~l~~~~~~~~il~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 51 (237)
T TIGR00968 1 IEIANISKRFGSFQALDDV-----NLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQ 51 (237)
T ss_pred CEEEEEEEEECCeeeeeeE-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788855 45689999 99999999999999999999999999997654
No 332
>PRK09177 xanthine-guanine phosphoribosyltransferase; Validated
Probab=97.92 E-value=5.8e-05 Score=67.02 Aligned_cols=87 Identities=20% Similarity=0.215 Sum_probs=62.2
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEE--cCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHR--EGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r--~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++|.|+|+|..+...+.+.+.--.+..+.+++ .+++. .....+-+ ..+|++|+|+|++++||+|+..+.+.+.+
T Consensus 33 d~vvgv~~GG~~fa~~L~~~L~~~~v~~i~~ssY~~~~~~-~~~~~~~~-~~~gk~VLIVDDIiDTG~Tl~~v~~~l~~- 109 (156)
T PRK09177 33 KGIIAVTRGGLVPAAILARELGIRLVDTVCISSYDHDNQG-ELKVLKRA-EGDGEGFLVVDDLVDTGGTARAVREMYPK- 109 (156)
T ss_pred CEEEEEecCCeehHHHHHHHcCCCceeEEEEEEECCCcCC-cEEEecCC-CcCcCEEEEEeeeeCCHHHHHHHHHHHhh-
Confidence 478999999999998888887522244555533 33222 22222223 46899999999999999999999998853
Q ss_pred CCCCCcEEEEEEEeCHHH
Q 035513 391 GVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 391 g~~~~~i~~~~~~~~~~g 408 (473)
+.+++++..+.+
T Consensus 110 ------v~~a~l~~K~~~ 121 (156)
T PRK09177 110 ------AHFATVYAKPAG 121 (156)
T ss_pred ------CCEEEEEECcCC
Confidence 667888877764
No 333
>PRK14272 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.92 E-value=6.3e-06 Score=79.31 Aligned_cols=52 Identities=19% Similarity=0.222 Sum_probs=46.5
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+-+|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 55 (252)
T PRK14272 1 MTLLLSAQDVNIYYGDKQAVKNV-----NLDVQRGTVNALIGPSGCGKTTFLRAINRMHD 55 (252)
T ss_pred CeEEEEEeeeEEEECCEEeeccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 667899999976 45689999 99999999999999999999999999998764
No 334
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=97.92 E-value=6.7e-06 Score=79.05 Aligned_cols=50 Identities=24% Similarity=0.271 Sum_probs=44.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (250)
T PRK11264 2 SAIEVKNLVKKFHGQTVLHGI-----DLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQ 54 (250)
T ss_pred CcEEEeceEEEECCeeeeccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3799999976 45689999 99999999999999999999999999997654
No 335
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=97.91 E-value=2.1e-05 Score=70.65 Aligned_cols=55 Identities=15% Similarity=0.311 Sum_probs=44.2
Q ss_pred CCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 359 PADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 359 P~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
-.|++|+.+||+|+|+.||+|+++|.+.|+++|+ ++|++++ -+-+....++|.+.
T Consensus 78 VGDV~gk~~IIvDDiIdtg~Tl~~aA~~Lk~~GA--~~V~~~aTHgvfs~~A~~~l~~s 134 (184)
T PF14572_consen 78 VGDVKGKICIIVDDIIDTGGTLIKAAELLKERGA--KKVYACATHGVFSGDAPERLEES 134 (184)
T ss_dssp ES--TTSEEEEEEEEESSTHHHHHHHHHHHHTTE--SEEEEEEEEE---TTHHHHHHHS
T ss_pred EEEccCCeEeeecccccchHHHHHHHHHHHHcCC--CEEEEEEeCcccCchHHHHHhhc
Confidence 3689999999999999999999999999999999 7888887 34455678888764
No 336
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=97.91 E-value=1.4e-05 Score=86.12 Aligned_cols=56 Identities=16% Similarity=0.269 Sum_probs=47.4
Q ss_pred ceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 035513 4 VIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLV 64 (473)
Q Consensus 4 ~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~i 64 (473)
-|+++|++. + ++.|+++ |...+++..++|.|++||||||+++.|.+.+.. .|-..+
T Consensus 328 ~I~f~~vsf~y~~~~~vl~~i-----s~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 328 SIEFENVSFSYPGKKPVLKDI-----SFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred eEEEEEEEEEcCCCCccccCc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 389999966 3 4799999 999999999999999999999999999998764 444444
No 337
>PRK13811 orotate phosphoribosyltransferase; Provisional
Probab=97.90 E-value=0.00012 Score=66.12 Aligned_cols=100 Identities=18% Similarity=0.291 Sum_probs=66.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC-CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGN-SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~-~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~ 392 (473)
++|++-..|.++...+...+. .+ ++.+.+... ......+. .+++|++|+|+|++++||+|+..+++.|++.|+
T Consensus 59 ~Vvg~~~gGi~~A~~~a~~l~-~p--~~~~rK~~k~~g~~~~~~---g~~~g~~VlIVDDvi~TG~T~~~~~~~l~~~Ga 132 (170)
T PRK13811 59 VVAGVAVGGVPLAVAVSLAAG-KP--YAIIRKEAKDHGKAGLII---GDVKGKRVLLVEDVTTSGGSALYGIEQLRAAGA 132 (170)
T ss_pred EEEecCcCcHHHHHHHHHHHC-CC--EEEEecCCCCCCCcceEE---cccCCCEEEEEEecccccHHHHHHHHHHHHCCC
Confidence 345555678888888777663 33 454554322 22211221 246899999999999999999999999999998
Q ss_pred CCCcEEEEEEEeCHHHHHHHHHhCCCcEEE
Q 035513 393 PESNIIFLNLIAAPQGIHAICKRFPKIKIV 422 (473)
Q Consensus 393 ~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~ 422 (473)
+=+-+++++--.+|..+..+.+ ++++.
T Consensus 133 --~v~~~~~~vdr~~g~~~~l~~~-gv~~~ 159 (170)
T PRK13811 133 --VVDDVVTVVDREQGAEELLAEL-GITLT 159 (170)
T ss_pred --eEEEEEEEEECCccHHHHHHhc-CCcEE
Confidence 3456667777776765554544 34443
No 338
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=97.89 E-value=7.7e-06 Score=74.52 Aligned_cols=30 Identities=13% Similarity=0.275 Sum_probs=24.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
||.|++..|||++|+|+.||++|+ +.+++-
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg---~~~~d~ 30 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLG---YPYYDR 30 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT-----EE-H
T ss_pred CEEECCCCCCChHHHHHHHHHHcC---CccCCH
Confidence 699999999999999999999998 888765
No 339
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=97.89 E-value=8.4e-06 Score=77.92 Aligned_cols=51 Identities=14% Similarity=0.252 Sum_probs=44.9
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~l~~~~l~~~~~~~~~l~~~-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 54 (241)
T PRK10895 1 MATLTAKNLAKAYKGRRVVEDV-----SLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVP 54 (241)
T ss_pred CceEEEeCcEEEeCCEEEEeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 05799999976 45689999 99999999999999999999999999998764
No 340
>COG0645 Predicted kinase [General function prediction only]
Probab=97.89 E-value=2.4e-05 Score=68.98 Aligned_cols=117 Identities=16% Similarity=0.158 Sum_probs=68.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
.++.+.|.+||||||+|+.|++.++ ...|..|.+-+.+...+...... ++.+..--....+..+....
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lg---A~~lrsD~irk~L~g~p~~~r~~--~g~ys~~~~~~vy~~l~~~A------- 69 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLG---AIRLRSDVIRKRLFGVPEETRGP--AGLYSPAATAAVYDELLGRA------- 69 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcC---ceEEehHHHHHHhcCCcccccCC--CCCCcHHHHHHHHHHHHHHH-------
Confidence 5788999999999999999999988 89999998776554411111111 11111111111111111110
Q ss_pred cccccccccccccccccCCCcEEEEecccccCChh--hhhcc-----C-eEEEEecChhHHHHHhhhccc
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--VRDLM-----S-MKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~--~~~~~-----D-l~I~L~~~~e~~~~R~~~R~~ 174 (473)
...+....-+|+|+.+.-.... ..... . ..|.++++.++...|+..|..
T Consensus 70 -------------~l~l~~G~~VVlDa~~~r~~~R~~~~~~A~~~gv~~~li~~~ap~~v~~~rl~aR~~ 126 (170)
T COG0645 70 -------------ELLLSSGHSVVLDATFDRPQERALARALARDVGVAFVLIRLEAPEEVLRGRLAARKG 126 (170)
T ss_pred -------------HHHHhCCCcEEEecccCCHHHHHHHHHHHhccCCceEEEEcCCcHHHHHHHHHHhCC
Confidence 0113345667777766533221 11111 1 468899999999999999954
No 341
>COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism]
Probab=97.88 E-value=1e-05 Score=75.49 Aligned_cols=52 Identities=19% Similarity=0.204 Sum_probs=46.9
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|++. ++..|+++ +...+...-.+|.|++||||||+.+.++..+.
T Consensus 28 ~~~li~l~~v~v~r~gk~iL~~i-----sW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~ 82 (257)
T COG1119 28 NEPLIELKNVSVRRNGKKILGDL-----SWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHP 82 (257)
T ss_pred CcceEEecceEEEECCEeecccc-----ceeecCCCcEEEECCCCCCHHHHHHHHhcccC
Confidence 457899999954 78899999 99999999999999999999999999987765
No 342
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.88 E-value=1.2e-05 Score=87.26 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=43.8
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
-|+++|++. +...|+++ ++..+++..|+|.|+||||||||.+.|+..+.+
T Consensus 340 ~i~~~~v~f~y~~~~~il~~i-----~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p 393 (592)
T PRK10790 340 RIDIDNVSFAYRDDNLVLQNI-----NLSVPSRGFVALVGHTGSGKSTLASLLMGYYPL 393 (592)
T ss_pred eEEEEEEEEEeCCCCceeece-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcccCC
Confidence 488999965 24589999 999999999999999999999999999988753
No 343
>PRK14274 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.87 E-value=9e-06 Score=78.64 Aligned_cols=51 Identities=14% Similarity=0.218 Sum_probs=45.0
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+.+ +...++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 10 ~~~l~i~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 63 (259)
T PRK14274 10 QEVYQINGMNLWYGQHHALKNI-----NLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQ 63 (259)
T ss_pred CceEEEeeEEEEECCeeeEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 35899999976 35689999 99999999999999999999999999998763
No 344
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=97.87 E-value=2.6e-05 Score=81.27 Aligned_cols=62 Identities=13% Similarity=0.291 Sum_probs=49.1
Q ss_pred ccceeeccccc--c------------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEec
Q 035513 2 ETVIELADDFA--D------------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQ 66 (473)
Q Consensus 2 ~~~i~~~~~~~--~------------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~ 66 (473)
+++++++|+.+ . ...++++ |+....+.+++|.|.|||||||+++.|+..+.+ .|...++.
T Consensus 278 ~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~V-----Sf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g 352 (539)
T COG1123 278 EPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDV-----SFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDG 352 (539)
T ss_pred CceeEeeeeeeeeccccccccccccceeeeeee-----eeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeC
Confidence 35788999977 1 1346777 888899999999999999999999999988754 45566665
Q ss_pred CC
Q 035513 67 DS 68 (473)
Q Consensus 67 D~ 68 (473)
.+
T Consensus 353 ~~ 354 (539)
T COG1123 353 QD 354 (539)
T ss_pred cc
Confidence 55
No 345
>PRK13812 orotate phosphoribosyltransferase; Provisional
Probab=97.87 E-value=0.00015 Score=65.72 Aligned_cols=101 Identities=14% Similarity=0.207 Sum_probs=64.5
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC-Cc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS-GR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~-~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++.-+|.++...+...+- .+ .+.+++.... +. ......+ .+|++|+|+|++++||+|+.++++.|++.|
T Consensus 61 ~ivg~~~ggi~lA~~lA~~l~-~p--~~~~rk~~k~yg~~~~~~g~~---~~g~~VlIVDDvitTG~Tl~~~~~~l~~~G 134 (176)
T PRK13812 61 KLAGVALGAVPLVAVTSVETG-VP--YVIARKQAKEYGTGNRIEGRL---DEGEEVVVLEDIATTGQSAVDAVEALREAG 134 (176)
T ss_pred EEEEeecchHHHHHHHHHHHC-CC--EEEEeccCCcCCCCCeEEecC---CCcCEEEEEEEeeCCCHHHHHHHHHHHHCC
Confidence 344555578888877766642 33 4444443221 11 2222211 268999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 035513 392 VPESNIIFLNLIAAPQGIHAICKRFPKIKIVT 423 (473)
Q Consensus 392 ~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~ 423 (473)
+ +-+-+++++-..+|-....+++ ++.+++
T Consensus 135 a--~vv~~~vlvdr~~~~~~~l~~~-g~~v~s 163 (176)
T PRK13812 135 A--TVNRVLVVVDREEGARENLADH-DVELEA 163 (176)
T ss_pred C--eEEEEEEEEECCcchHHHHHhc-CCcEEE
Confidence 8 4466666676665655444443 454443
No 346
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.87 E-value=1.6e-05 Score=75.40 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=45.1
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLV 64 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~i 64 (473)
|+++|+.+ .+..++++ ++..+++.+++|.|++|||||||.+.|+..+.. .|-..+
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~ 59 (230)
T TIGR03410 1 LEVSNLNVYYGQSHILRGV-----SLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRL 59 (230)
T ss_pred CEEEeEEEEeCCeEEecce-----eeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEE
Confidence 57888866 34689999 999999999999999999999999999987652 344444
No 347
>PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.87 E-value=2e-05 Score=76.87 Aligned_cols=49 Identities=27% Similarity=0.330 Sum_probs=43.1
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...|+++ +++..++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~~l~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (274)
T PRK13644 1 MIRLENVSYSYPDGTPALENI-----NLVIKKGEYIGIIGKNGSGKSTLALHLNGLLR 53 (274)
T ss_pred CEEEEEEEEEcCCCCceeeee-----EEEEeCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 478999966 23489999 99999999999999999999999999998764
No 348
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein. This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found.
Probab=97.86 E-value=3.1e-05 Score=72.60 Aligned_cols=48 Identities=15% Similarity=0.232 Sum_probs=39.9
Q ss_pred eeecccccc-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFAD-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++|+++. ...++++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 1 ~~~~~l~~~~~~~~~~~-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 49 (213)
T TIGR01277 1 LALDKVRYEYEHLPMEF-----DLNVADGEIVAIMGPSGAGKSTLLNLIAGFIE 49 (213)
T ss_pred CeEEeeeEEeCCcceee-----EEEEeCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 467888662 2356788 88999999999999999999999999998764
No 349
>PRK13633 cobalt transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=7.6e-06 Score=80.13 Aligned_cols=52 Identities=21% Similarity=0.306 Sum_probs=46.6
Q ss_pred Cccceeeccccc--c-------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D-------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~-------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ . ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~l~~~~~~~~~~~~~~vl~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 61 (280)
T PRK13633 1 MNEMIKCKNVSYKYESNEESTEKLALDDV-----NLEVKKGEFLVILGRNGSGKSTIAKHMNALLI 61 (280)
T ss_pred CCceEEEeeeEEEcCCCCCCCCcceeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 888999999977 2 2499999 99999999999999999999999999997765
No 350
>TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei.
Probab=97.86 E-value=2.9e-05 Score=85.01 Aligned_cols=49 Identities=12% Similarity=0.153 Sum_probs=43.3
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ +...++++ ++..+++.+++|.|++||||||+.+.|+..++
T Consensus 451 ~i~~~nv~~~~~~~~~il~~i-----sl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~ 503 (659)
T TIGR00954 451 GIKFENIPLVTPNGDVLIESL-----SFEVPSGNHLLICGPNGCGKSSLFRILGELWP 503 (659)
T ss_pred eEEEEeeEEECCCCCeeeecc-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999965 23689999 99999999999999999999999999998764
No 351
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=97.86 E-value=1e-05 Score=77.40 Aligned_cols=49 Identities=16% Similarity=0.124 Sum_probs=43.9
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (242)
T PRK11124 2 SIQLNGINCFYGAHQALFDI-----TLDCPQGETLVLLGPSGAGKSSLLRVLNLLEM 53 (242)
T ss_pred EEEEEeeEEEECCeeeEeee-----eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999966 45689999 99999999999999999999999999997754
No 352
>TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein. Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005).
Probab=97.86 E-value=3.1e-05 Score=82.25 Aligned_cols=49 Identities=14% Similarity=0.294 Sum_probs=43.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~i~~l~~~~~~~~il~~i-----sl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~ 52 (500)
T TIGR02633 1 LLEMKGIVKTFGGVKALDGI-----DLEVRPGECVGLCGENGAGKSTLMKILSGVYP 52 (500)
T ss_pred CEEEEeEEEEeCCeEeecce-----EEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999976 45689999 99999999999999999999999999998765
No 353
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.85 E-value=9.2e-06 Score=77.21 Aligned_cols=49 Identities=24% Similarity=0.386 Sum_probs=43.3
Q ss_pred ceeeccccc---cc----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DD----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +. ..++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDV-----SLSVPKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred CeEEecceEEccCCCCceeeeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999966 33 689999 99999999999999999999999999998764
No 354
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=97.85 E-value=1.9e-05 Score=74.66 Aligned_cols=48 Identities=15% Similarity=0.258 Sum_probs=40.5
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.++|++. +...++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 23 l~~~~~~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 73 (224)
T cd03220 23 LGILGRKGEVGEFWALKDV-----SFEVPRGERIGLIGRNGAGKSTLLRLLAGIYP 73 (224)
T ss_pred hhhhhhhhhcCCeEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45566644 45689999 99999999999999999999999999998654
No 355
>TIGR01194 cyc_pep_trnsptr cyclic peptide transporter. This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake.
Probab=97.85 E-value=2.9e-05 Score=83.50 Aligned_cols=57 Identities=19% Similarity=0.296 Sum_probs=46.0
Q ss_pred ceeeccccc--cc------ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 4 VIELADDFA--DD------LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 4 ~i~~~~~~~--~~------~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
-|+++|+++ .. ..|+++ ++..+++.+++|.|++||||||+.+.|+..+.. .|-..++
T Consensus 337 ~i~~~~v~f~y~~~~~~~~~~l~~v-----s~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~ 402 (555)
T TIGR01194 337 SIELKDVHMNPKAPEGSEGFALGPI-----DLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLD 402 (555)
T ss_pred eEEEEEEEEEeCCCCCCcCceeccc-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEC
Confidence 488999965 21 478999 999999999999999999999999999987653 4444443
No 356
>PRK13538 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.84 E-value=8.9e-06 Score=75.71 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=43.5
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (204)
T PRK13538 1 MLEARNLACERDERILFSGL-----SFTLNAGELVQIEGPNGAGKTSLLRILAGLAR 52 (204)
T ss_pred CeEEEEEEEEECCEEEEecc-----eEEECCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999976 44689999 99999999999999999999999999998754
No 357
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein. This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins.
Probab=97.84 E-value=1.6e-05 Score=85.88 Aligned_cols=49 Identities=14% Similarity=0.257 Sum_probs=43.1
Q ss_pred ceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. . +..|+++ ++..+++..++|.|++||||||+++.|+..+.
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~i-----nl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~ 391 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGL-----NLTVRPGETVALVGPSGAGKSTLFQLLLRFYD 391 (576)
T ss_pred eEEEEEEEEECCCCCCCccccce-----eEEecCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 488999955 1 3589999 99999999999999999999999999998875
No 358
>PRK14262 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.84 E-value=1.5e-05 Score=76.62 Aligned_cols=50 Identities=22% Similarity=0.269 Sum_probs=44.2
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++..+.+.+++|.|++|||||||.+.|+..++
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i-----~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 54 (250)
T PRK14262 2 PIIEIENFSAYYGEKKAVKNV-----TMKIFKNQITAIIGPSGCGKTTLLRSINRMND 54 (250)
T ss_pred ceEEEEeeEEEeCCceeEeee-----eEeecCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 4799999976 34689999 99999999999999999999999999997654
No 359
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=97.84 E-value=1.1e-05 Score=76.91 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=44.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (237)
T PRK11614 4 VMLSFDKVSAHYGKIQALHEV-----SLHINQGEIVTLIGANGAGKTTLLGTLCGDPR 56 (237)
T ss_pred cEEEEEeEEEeeCCceeeeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4799999976 35689999 99999999999999999999999999987654
No 360
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=97.84 E-value=5.5e-05 Score=70.96 Aligned_cols=56 Identities=20% Similarity=0.376 Sum_probs=34.1
Q ss_pred EEEEecChhHHHHHhhh-ccccccCCChHH-HHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 155 KIFVDTDSDVRLSRRIQ-RDTVERGRDIED-VLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 155 ~I~L~~~~e~~~~R~~~-R~~~~~~~~~~~-~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
++|++|+.++.+.|... |. ........ ..+.+.. ..++..|.+..||+|||.+.-+
T Consensus 86 iLFLeA~~~~Lv~RY~etRR--~HPL~~~~~l~~~I~~-----ERelL~pLk~~A~~vIDTs~ls 143 (286)
T COG1660 86 VLFLEADDETLVRRYSETRR--SHPLSEDGLLLEAIAK-----ERELLAPLREIADLVIDTSELS 143 (286)
T ss_pred EEEEECchhHHHHHHhhhhh--cCCCCccCcHHHHHHH-----HHHHHHHHHHHhhhEeecccCC
Confidence 78999999999999864 32 11222221 2222221 2245566788999999976333
No 361
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=97.84 E-value=0.00017 Score=73.61 Aligned_cols=65 Identities=12% Similarity=0.274 Sum_probs=52.4
Q ss_pred ecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEE--EEeCHHHHHHHHHhCCCc-EEEEE
Q 035513 356 QKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLN--LIAAPQGIHAICKRFPKI-KIVTS 424 (473)
Q Consensus 356 ~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~--~~~~~~g~~~~~~~~p~v-~i~~~ 424 (473)
..+..+++|++|+|+|+|+.||+|++.|.+.|+++|+ ++|++++ -+-+..+.+++.+. .+ +||+.
T Consensus 327 ~~lvgdV~Gk~vIIVDDIIdTG~Tl~~aa~~Lk~~GA--~~V~~~~THglfs~~A~~rl~~s--~i~~IvvT 394 (439)
T PTZ00145 327 MDLVGNVYDSDVIIVDDMIDTSGTLCEAAKQLKKHGA--RRVFAFATHGLFSGPAIERIEAS--PLEEVVVT 394 (439)
T ss_pred EeccCCCCCCEEEEEcceeCcHHHHHHHHHHHHHcCC--CEEEEEEEcccCChhHHHHHhcC--CCCEEEEe
Confidence 4445689999999999999999999999999999999 6888877 34557888998664 34 45543
No 362
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.83 E-value=1.2e-05 Score=76.97 Aligned_cols=50 Identities=16% Similarity=0.218 Sum_probs=44.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ +...++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (241)
T PRK14250 2 NEIEFKEVSYSSFGKEILKDI-----SVKFEGGAIYTIVGPSGAGKSTLIKLINRLID 54 (241)
T ss_pred ceEEEEeEEEEeCCeeeeeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999976 44689999 99999999999999999999999999998764
No 363
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=97.83 E-value=4.2e-05 Score=72.63 Aligned_cols=49 Identities=18% Similarity=0.174 Sum_probs=40.2
Q ss_pred ceeeccccccc-ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFADD-LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~~~-~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++.. ....++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (232)
T PRK10771 1 MLKLTDITWLYHHLPMRF-----DLTVERGERVAILGPSGAGKSTLLNLIAGFLT 50 (232)
T ss_pred CeEEEEEEEEECCcccee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 47899997721 133477 88999999999999999999999999998654
No 364
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=2.1e-05 Score=73.49 Aligned_cols=47 Identities=17% Similarity=0.302 Sum_probs=40.4
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++..+++ +++|.|++||||||+.+.|+..+.
T Consensus 1 i~~~~~~~~~~~~~~l~~v-----s~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~ 50 (211)
T cd03264 1 LQLENLTKRYGKKRALDGV-----SLTLGPG-MYGLLGPNGAGKTTLMRILATLTP 50 (211)
T ss_pred CEEEEEEEEECCEEEEcce-----eEEEcCC-cEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 34589999 8988888 999999999999999999998664
No 365
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.82 E-value=3.9e-05 Score=72.94 Aligned_cols=48 Identities=23% Similarity=0.261 Sum_probs=42.0
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ ....++++ +++...+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~il~~i-----~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~ 51 (232)
T cd03300 1 IELENVSKFYGGFVALDGV-----SLDIKEGEFFTLLGPSGCGKTTLLRLIAGFET 51 (232)
T ss_pred CEEEeEEEEeCCeeeeccc-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788865 44689999 99999999999999999999999999998765
No 366
>PRK13540 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.82 E-value=1.1e-05 Score=74.72 Aligned_cols=49 Identities=20% Similarity=0.264 Sum_probs=43.4
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 ml~~~~l~~~~~~~~il~~~-----s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 52 (200)
T PRK13540 1 MLDVIELDFDYHDQPLLQQI-----SFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLN 52 (200)
T ss_pred CEEEEEEEEEeCCeeEEeee-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999966 45689999 99999999999999999999999999997654
No 367
>TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.82 E-value=2.4e-05 Score=84.02 Aligned_cols=49 Identities=14% Similarity=0.265 Sum_probs=43.3
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ .+..|+++ +...+++..++|.|++||||||+++.|+..+.
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~-----~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 369 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGI-----SFRLQAGEALAIIGPSGSGKSTLARLIVGIWP 369 (544)
T ss_pred eEEEEEEEEEcCCCCccccccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999965 13589999 99999999999999999999999999998775
No 368
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=97.82 E-value=1.7e-05 Score=80.83 Aligned_cols=64 Identities=14% Similarity=0.241 Sum_probs=51.7
Q ss_pred ccceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCC
Q 035513 2 ETVIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFY 70 (473)
Q Consensus 2 ~~~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~ 70 (473)
+..|.+++++. ++..++++ ++....+..++|.|||||||||+++.|...... .|...++.-+++
T Consensus 332 ~g~L~Ve~l~~~PPg~~~pil~~i-----sF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~ 401 (580)
T COG4618 332 QGALSVERLTAAPPGQKKPILKGI-----SFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLR 401 (580)
T ss_pred CceeeEeeeeecCCCCCCcceecc-----eeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhh
Confidence 35788999976 56799999 999999999999999999999999999887653 455556554433
No 369
>PRK14239 phosphate transporter ATP-binding protein; Provisional
Probab=97.81 E-value=1.4e-05 Score=76.99 Aligned_cols=48 Identities=19% Similarity=0.248 Sum_probs=43.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~~-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (252)
T PRK14239 4 PILQVSDLSVYYNKKKALNSV-----SLDFYPNEITALIGPSGSGKSTLLRSINRM 54 (252)
T ss_pred ceEEEEeeEEEECCeeeeeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhcc
Confidence 4899999976 44689999 999999999999999999999999999865
No 370
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=97.81 E-value=1.2e-05 Score=76.17 Aligned_cols=47 Identities=21% Similarity=0.282 Sum_probs=41.9
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|+++|+++ ....++++ ++....+.+++|.|++|||||||++.|+..+
T Consensus 1 i~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 1 IELRDLNVYYGDKHALKDI-----SLDIPKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEEEEEcCCceeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 57888866 34689999 9999999999999999999999999999876
No 371
>PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional
Probab=97.81 E-value=3.1e-05 Score=81.00 Aligned_cols=49 Identities=27% Similarity=0.390 Sum_probs=39.1
Q ss_pred ceeeccccc---c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++++|+++ . ...|+++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 21 mL~lknL~~~~~~~~~~~IL~nV-----SfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~ 75 (549)
T PRK13545 21 FDKLKDLFFRSKDGEYHYALNNI-----SFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTM 75 (549)
T ss_pred eeEEEEEEEecCCCccceEEeee-----EEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 455555533 1 2368888 88889999999999999999999999998764
No 372
>COG1040 ComFC Predicted amidophosphoribosyltransferases [General function prediction only]
Probab=97.81 E-value=1.3e-05 Score=75.53 Aligned_cols=127 Identities=20% Similarity=0.193 Sum_probs=70.4
Q ss_pred HHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeE-ecceeeEEEee--ccCchhHHHHHhhcCCceeeEEEEEEcCC-
Q 035513 273 YADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVV-FCRRLCGISII--RSGESMENALRACCKGIKIGKILIHREGN- 348 (473)
Q Consensus 273 ~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~-~~~~~~~v~il--raG~~~~~~~~~~~p~a~~g~i~~~r~~~- 348 (473)
...-++++|...........+..|+.|++......+ |++.-.++--+ +.|.+. .+++.-.+.. +.++...++
T Consensus 93 l~~~la~~l~~~~~~~~~~~~~iVpVPls~~r~~~RGFNQ~~~la~~l~~~~~~~~--~~~r~k~~~~--q~~l~~~~rr 168 (225)
T COG1040 93 LAKLLARLLAKALDDFLEKPDLIVPVPLSPSRLLERGFNQSELLARALARRLGKPI--ALRRVKDTSP--QQGLKALERR 168 (225)
T ss_pred HHHHHHHHHHHHHhhccccCCeEEEecCCHHHHHHcCCCHHHHHHHHHHHHhCchH--HHHHHhcccc--ccccchHHHH
Confidence 344455566555552333345567788864321111 22211111111 223332 3333333333 223332222
Q ss_pred -CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCH
Q 035513 349 -SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAP 406 (473)
Q Consensus 349 -~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~ 406 (473)
+.+..+..+-+.... ++|+|+|++++||.|+..+.+.|++.|+ ++|.+.++..++
T Consensus 169 ~nl~~aF~~~~~~~~~-~~vlLvDDV~TTGaTl~~~~~~L~~~Ga--~~v~~~~lar~~ 224 (225)
T COG1040 169 RNLKGAFRLKKGIEEP-KNVLLVDDVYTTGATLKEAAKLLREAGA--KRVFVLTLARAP 224 (225)
T ss_pred HhccCCeecCCCCCCC-CeEEEEecccccHHHHHHHHHHHHHcCC--ceEEEEEEEecC
Confidence 233444444443333 8999999999999999999999999998 789988887654
No 373
>PRK14235 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=1.3e-05 Score=77.85 Aligned_cols=50 Identities=14% Similarity=0.127 Sum_probs=44.8
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 18 ~~l~~~nl~~~~~~~~il~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 70 (267)
T PRK14235 18 IKMRARDVSVFYGEKQALFDV-----DLDIPEKTVTAFIGPSGCGKSTFLRCLNRMND 70 (267)
T ss_pred ceEEEEeEEEEECCEEEEEEE-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5799999976 45689999 99999999999999999999999999998764
No 374
>PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional
Probab=97.80 E-value=1.2e-05 Score=77.65 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=45.4
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..|+++|+++ +...++++ ++..+++.+++|.|++|||||||++.|+..+.
T Consensus 3 ~~~l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 56 (257)
T PRK10619 3 ENKLNVIDLHKRYGEHEVLKGV-----SLQANAGDVISIIGSSGSGKSTFLRCINFLEK 56 (257)
T ss_pred CccEEEeeeEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 45899999976 45689999 99999999999999999999999999998764
No 375
>PRK07322 adenine phosphoribosyltransferase; Provisional
Probab=97.80 E-value=8.4e-05 Score=67.56 Aligned_cols=89 Identities=12% Similarity=0.168 Sum_probs=59.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC---C-------------ceEEee-c-CCCCCCCcEEEEEccccc
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS---G-------------RQLIYQ-K-LPADISSRHVLLLDPILA 375 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~---~-------------~~~~~~-~-lP~~~~~~~v~l~dp~~a 375 (473)
++|++.++|.++...+.+.+. ++ .+.+++...+ . ....+. . .+..++|++|+|+|++++
T Consensus 55 ~Iv~v~~gGiplA~~lA~~L~-~p--~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VLIVDDiit 131 (178)
T PRK07322 55 VLVTPETKGIPLAHALSRRLG-KP--YVVARKSRKPYMQDPIIQEVVSITTGKPQLLVLDGADAEKLKGKRVAIVDDVVS 131 (178)
T ss_pred EEEEeccCCHHHHHHHHHHHC-CC--EEEEEEeCCCCCCCceEEEEEEEEeccceEEEecCccccccCCCEEEEEecccc
Confidence 567777888888887777654 23 3334432211 0 112221 1 122478999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHH
Q 035513 376 SGNSAVKAISLILSKGVPESNIIFLNLIAAPQ 407 (473)
Q Consensus 376 TG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~ 407 (473)
||+|+.++++.|++.|+ +.+.+++++.-.+
T Consensus 132 TG~Tl~aa~~~L~~~GA--~~V~~~~v~~~~~ 161 (178)
T PRK07322 132 TGGTLTALERLVERAGG--QVVAKAAIFAEGD 161 (178)
T ss_pred ccHHHHHHHHHHHHcCC--EEEEEEEEEEcCC
Confidence 99999999999999998 5577777766444
No 376
>PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional
Probab=97.80 E-value=3.6e-05 Score=82.34 Aligned_cols=50 Identities=12% Similarity=0.217 Sum_probs=44.5
Q ss_pred cceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...++++ ++....+.+++|.|++|||||||++.|+..++
T Consensus 4 ~~l~~~~l~~~~~~~~~~~~~l~~i-----sl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~ 60 (529)
T PRK15134 4 PLLAIENLSVAFRQQQTVRTVVNDV-----SLQIEAGETLALVGESGSGKSVTALSILRLLP 60 (529)
T ss_pred ceEEEeceEEEecCCCCceeeeece-----EEEEeCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4899999966 2 2589999 99999999999999999999999999998875
No 377
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=97.80 E-value=1.1e-05 Score=75.79 Aligned_cols=49 Identities=14% Similarity=0.234 Sum_probs=42.7
Q ss_pred ceeeccccc---c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 54 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNL-----NFHITKGEMVFLVGHSGAGKSTFLKLILGIEK 54 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999966 2 2589999 99999999999999999999999999998764
No 378
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=97.80 E-value=1.1e-05 Score=77.85 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 11 ~~l~i~~l~~~~~~~~il~~i-----sl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~ 63 (257)
T PRK11247 11 TPLLLNAVSKRYGERTVLNQL-----DLHIPAGQFVAVVGRSGCGKSTLLRLLAGLET 63 (257)
T ss_pred CcEEEEEEEEEECCcceeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999976 45689999 99999999999999999999999999998764
No 379
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.80 E-value=2.4e-05 Score=80.39 Aligned_cols=49 Identities=18% Similarity=0.267 Sum_probs=44.0
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.++++|++. ..+.|+++ |...+.+..|+|.|+|||||||+.+.|+..+.
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~-----~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~ 389 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNF-----NLTLAQGEKVAILGRSGSGKSTLLQLLAGAWD 389 (573)
T ss_pred eeeeccceeecCCCccchhhcc-----ceeecCCCeEEEECCCCCCHHHHHHHHHhccC
Confidence 689999965 33599999 99999999999999999999999999998765
No 380
>PRK14237 phosphate transporter ATP-binding protein; Provisional
Probab=97.80 E-value=1.3e-05 Score=77.83 Aligned_cols=51 Identities=16% Similarity=0.177 Sum_probs=45.3
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 18 ~~~l~~~nl~~~~~~~~il~~v-----sl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 71 (267)
T PRK14237 18 EIALSTKDLHVYYGKKEAIKGI-----DMQFEKNKITALIGPSGSGKSTYLRSLNRMND 71 (267)
T ss_pred CeEEEEeeEEEEECCeeeEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 45899999976 45689999 99999999999999999999999999998763
No 381
>PRK06031 phosphoribosyltransferase; Provisional
Probab=97.80 E-value=0.00021 Score=67.58 Aligned_cols=53 Identities=19% Similarity=0.254 Sum_probs=41.7
Q ss_pred CCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHh
Q 035513 361 DISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKR 415 (473)
Q Consensus 361 ~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~ 415 (473)
.++|++|+|+|++++||+|+.++++.|++.|+ +-+-+++++.-.++-++..++
T Consensus 151 ~~~GkrVLIVDDVitTG~Tl~aa~~lL~~~Ga--~Vvgv~v~v~~g~~~~~~l~~ 203 (233)
T PRK06031 151 LLEGRRVALIDDVISSGASIVAGLRLLAACGI--EPAGIGAAMLQSERWRESLAA 203 (233)
T ss_pred cCCCCEEEEEEeEccccHHHHHHHHHHHHcCC--eEEEEEEEEEccccHHHHHHh
Confidence 46899999999999999999999999999998 345555556666665544443
No 382
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=97.79 E-value=1.3e-05 Score=77.12 Aligned_cols=49 Identities=18% Similarity=0.129 Sum_probs=43.9
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+
T Consensus 5 ~~l~~~~l~~~~~~~~il~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 5 PKMEARGLSFFYGDFQALHDI-----SLEFEQNQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred cEEEEeeeEEEECCeeeecce-----eEEEeCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 5899999976 34689999 9999999999999999999999999999764
No 383
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=97.79 E-value=5.1e-05 Score=65.92 Aligned_cols=24 Identities=21% Similarity=0.452 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+|.|++||||||+++.|++.++
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998865
No 384
>PRK14273 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.79 E-value=1.6e-05 Score=76.60 Aligned_cols=50 Identities=16% Similarity=0.158 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (254)
T PRK14273 6 AIIETENLNLFYTDFKALNNI-----NIKILKNSITALIGPSGCGKSTFLRTLNRMND 58 (254)
T ss_pred ceEEEeeeEEEeCCceeecce-----eeEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 5899999976 44589999 99999999999999999999999999997664
No 385
>PHA00729 NTP-binding motif containing protein
Probab=97.79 E-value=0.0001 Score=68.91 Aligned_cols=110 Identities=13% Similarity=0.049 Sum_probs=64.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
....|+|+|+||+||||+|..|+..+.. ....++.+... .... ..--.++.+.+.+.+.....+.
T Consensus 16 ~f~nIlItG~pGvGKT~LA~aLa~~l~~-~l~~l~~~~~~-------~d~~-----~~~~fid~~~Ll~~L~~a~~~~-- 80 (226)
T PHA00729 16 GFVSAVIFGKQGSGKTTYALKVARDVFW-KLNNLSTKDDA-------WQYV-----QNSYFFELPDALEKIQDAIDND-- 80 (226)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHHHh-hcccccchhhH-------HhcC-----CcEEEEEHHHHHHHHHHHHhcC--
Confidence 3457999999999999999999998641 12222222100 0000 0011345555555554432210
Q ss_pred eccccccccccccccccccCCCcEEEEecccccC----------------ChhhhhccCeEEEEecChhHHHHHhhhccc
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLH----------------DPRVRDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~----------------~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
...+++|+|++..-. .+.++..+++.++..++++.+.+++..|+.
T Consensus 81 -------------------~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~Rg~ 141 (226)
T PHA00729 81 -------------------YRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLREKGW 141 (226)
T ss_pred -------------------CCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHhCCC
Confidence 123577888722111 122344578899999999999999988854
No 386
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=97.79 E-value=1.6e-05 Score=75.16 Aligned_cols=49 Identities=22% Similarity=0.413 Sum_probs=42.7
Q ss_pred ceeeccccc---cc----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DD----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +. ..++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 56 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDV-----SFSIKKGETLGLVGESGSGKSTLARAILGLLK 56 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCc-----eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999966 22 589999 99999999999999999999999999997654
No 387
>cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=3.2e-05 Score=75.24 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=38.5
Q ss_pred eccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 7 LADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 7 ~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++|+.+ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 27 ~~~~~~~~~~~~il~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~ 75 (269)
T cd03294 27 KEEILKKTGQTVGVNDV-----SLDVREGEIFVIMGLSGSGKSTLLRCINRLIE 75 (269)
T ss_pred hhhhhhhcCCceEeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 345544 34478999 99999999999999999999999999998764
No 388
>COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism]
Probab=97.78 E-value=0.00016 Score=74.95 Aligned_cols=50 Identities=16% Similarity=0.232 Sum_probs=46.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++++|++| +-+.|+++ ++...++.+.++.|-+|+|||||.+.|+..+.
T Consensus 7 ~ll~~~~i~K~FggV~AL~~v-----~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~ 59 (500)
T COG1129 7 PLLELRGISKSFGGVKALDGV-----SLTVRPGEVHALLGENGAGKSTLMKILSGVYP 59 (500)
T ss_pred ceeeeecceEEcCCceeeccc-----eeEEeCceEEEEecCCCCCHHHHHHHHhCccc
Confidence 4899999988 67899999 99999999999999999999999999998775
No 389
>TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein. This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters.
Probab=97.78 E-value=1.5e-05 Score=76.52 Aligned_cols=49 Identities=16% Similarity=0.207 Sum_probs=43.3
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 52 (247)
T TIGR00972 1 AIEIENLNLFYGEKEALKNI-----NLDIPKNQVTALIGPSGCGKSTLLRSLNRMND 52 (247)
T ss_pred CEEEEEEEEEECCeeeecce-----eEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 478999976 34589999 99999999999999999999999999998764
No 390
>PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=1.1e-05 Score=78.49 Aligned_cols=49 Identities=22% Similarity=0.330 Sum_probs=43.5
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~~l~~~~~~~~il~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (271)
T PRK13638 1 MLATSDLWFRYQDEPVLKGL-----NLDFSLSPVTGLVGANGCGKSTLFMNLSGLLR 52 (271)
T ss_pred CeEEEEEEEEcCCcccccce-----EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 488999966 45689999 99999999999999999999999999998764
No 391
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=97.78 E-value=1.3e-05 Score=80.11 Aligned_cols=50 Identities=18% Similarity=0.268 Sum_probs=44.4
Q ss_pred cceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...++++ |+...++.+++|.|+|||||||+++.|+..+.
T Consensus 2 ~~L~v~~l~~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 2 ALLNVDKLSVHFGDESAPFRAVDRI-----SYSVKQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred ceEEEeCeEEEECCCCccEEEEeee-----EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 4799999966 2 2589999 99999999999999999999999999998764
No 392
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=97.78 E-value=1.2e-05 Score=78.40 Aligned_cols=49 Identities=14% Similarity=0.218 Sum_probs=43.6
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~nl~~~~~~~~il~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~ 52 (272)
T PRK13547 1 MLTADHLHVARRHRAILRDL-----SLRIEPGRVTALLGRNGAGKSTLLKALAGDLT 52 (272)
T ss_pred CeEEEEEEEEECCEeEEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 388999976 45689999 99999999999999999999999999998764
No 393
>PRK14248 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.78 E-value=1.5e-05 Score=77.44 Aligned_cols=49 Identities=18% Similarity=0.238 Sum_probs=43.8
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+
T Consensus 20 ~~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 71 (268)
T PRK14248 20 HILEVKDLSIYYGEKRAVNDI-----SMDIEKHAVTALIGPSGCGKSTFLRSINRMN 71 (268)
T ss_pred ceEEEEEEEEEeCCceeeece-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 4789999976 45689999 9999999999999999999999999999754
No 394
>TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2. The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2.
Probab=97.78 E-value=4e-05 Score=81.82 Aligned_cols=47 Identities=17% Similarity=0.289 Sum_probs=41.8
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~i-----s~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 50 (520)
T TIGR03269 1 IEVKNLTKKFDGKEVLKNI-----SFTIEEGEVLGILGRSGAGKSVLMHVLRGMD 50 (520)
T ss_pred CEEEEEEEEECCeEeeece-----eEEEcCCCEEEEECCCCCCHHHHHHHHhhcc
Confidence 57888866 44689999 9999999999999999999999999999875
No 395
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.78 E-value=1.1e-05 Score=76.86 Aligned_cols=48 Identities=25% Similarity=0.403 Sum_probs=42.1
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (235)
T cd03261 1 IELRGLTKSFGGRTVLKGV-----DLDVRRGEILAIIGPSGSGKSTLLRLIVGLLR 51 (235)
T ss_pred CeEEEEEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 35689999 99999999999999999999999999998764
No 396
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=97.77 E-value=1.6e-05 Score=76.08 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=41.5
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+
T Consensus 1 l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (243)
T TIGR01978 1 LKIKDLHVSVEDKEILKGV-----NLTVKKGEIHAIMGPNGSGKSTLSKTIAGHP 50 (243)
T ss_pred CeEeeEEEEECCEEEEecc-----ceEEcCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 57888966 45689999 9999999999999999999999999999763
No 397
>PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional
Probab=97.77 E-value=1.3e-05 Score=77.28 Aligned_cols=49 Identities=12% Similarity=0.152 Sum_probs=43.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~il~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (255)
T PRK11231 2 TLRTENLTVGYGTKRILNDL-----SLSLPTGKITALIGPNGCGKSTLLKCFARLLT 53 (255)
T ss_pred EEEEEeEEEEECCEEEEeee-----eeEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 689999976 45689999 99999999999999999999999999997654
No 398
>PRK14271 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.77 E-value=3.2e-05 Score=75.52 Aligned_cols=50 Identities=20% Similarity=0.137 Sum_probs=44.7
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 20 ~~l~i~nl~~~~~~~~il~~v-----s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 72 (276)
T PRK14271 20 PAMAAVNLTLGFAGKTVLDQV-----SMGFPARAVTSLMGPTGSGKTTFLRTLNRMND 72 (276)
T ss_pred cEEEEeeEEEEECCEEEeeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999977 45689999 99999999999999999999999999998764
No 399
>PRK14240 phosphate transporter ATP-binding protein; Provisional
Probab=97.77 E-value=1.7e-05 Score=76.27 Aligned_cols=49 Identities=18% Similarity=0.154 Sum_probs=43.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..|+++|+++ +...++++ ++..+.+.+++|.|++|||||||.+.|+..+
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14240 2 GKISVKDLDLFYGDFQALKKI-----NLDIEENQVTALIGPSGCGKSTFLRTLNRMN 53 (250)
T ss_pred CeEEEEEEEEEECCceeeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4789999976 45689999 9999999999999999999999999999754
No 400
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=97.77 E-value=1.3e-05 Score=76.22 Aligned_cols=48 Identities=25% Similarity=0.364 Sum_probs=41.6
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 51 (236)
T cd03219 1 LEVRGLTKRFGGLVALDDV-----SFSVRPGEIHGLIGPNGAGKTTLFNLISGFLR 51 (236)
T ss_pred CeeeeeEEEECCEEEecCc-----eEEecCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46788865 34589999 99999999999999999999999999987654
No 401
>PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional
Probab=97.77 E-value=1.5e-05 Score=77.62 Aligned_cols=50 Identities=12% Similarity=0.247 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 58 (269)
T PRK11831 6 NLVDMRGVSFTRGNRCIFDNI-----SLTVPRGKITAIMGPSGIGKTTLLRLIGGQIA 58 (269)
T ss_pred ceEEEeCeEEEECCEEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4799999976 45689999 99999999999999999999999999998764
No 402
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.76 E-value=7e-05 Score=69.99 Aligned_cols=47 Identities=19% Similarity=0.178 Sum_probs=38.5
Q ss_pred eeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +.. ..++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 i~~~~l~~~~~~~-~~~i-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~ 49 (211)
T cd03298 1 VRLDKIRFSYGEQ-PMHF-----DLTFAQGEITAIVGPSGSGKSTLLNLIAGFET 49 (211)
T ss_pred CEEEeEEEEeCCE-ecce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46788866 222 2377 88889999999999999999999999998764
No 403
>PRK14245 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.76 E-value=1.6e-05 Score=76.46 Aligned_cols=48 Identities=21% Similarity=0.234 Sum_probs=43.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+|+++|+++ ....++++ ++..+.+.+++|.|++|||||||.+.|+..
T Consensus 2 ~~l~~~~~~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 52 (250)
T PRK14245 2 VKIDARDVNFWYGDFHALKGI-----SMEIEEKSVVAFIGPSGCGKSTFLRLFNRM 52 (250)
T ss_pred cEEEEEEEEEEECCEeEEeee-----eEEEeCCCEEEEECCCCCCHHHHHHHHhhh
Confidence 5799999976 45689999 999999999999999999999999999864
No 404
>TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK. Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se.
Probab=97.76 E-value=1.8e-05 Score=76.14 Aligned_cols=50 Identities=18% Similarity=0.300 Sum_probs=44.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~~l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 54 (253)
T TIGR02323 2 PLLQVSGLSKSYGGGKGCRDV-----SFDLYPGEVLGIVGESGSGKSTLLGCLAGRLA 54 (253)
T ss_pred ceEEEeeeEEEeCCceEeecc-----eEEEeCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4789999977 34689999 99999999999999999999999999998764
No 405
>TIGR01192 chvA glucan exporter ATP-binding protein. This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related.
Probab=97.75 E-value=3.1e-05 Score=83.83 Aligned_cols=49 Identities=18% Similarity=0.274 Sum_probs=43.0
Q ss_pred ceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ + +..++++ ++..+++..++|.|++||||||+++.|+..+.
T Consensus 334 ~i~~~~v~~~y~~~~~~l~~i-----~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~ 386 (585)
T TIGR01192 334 AVEFRHITFEFANSSQGVFDV-----SFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386 (585)
T ss_pred eEEEEEEEEECCCCCccccce-----eEEEcCCCEEEEECCCCCCHHHHHHHHccCCC
Confidence 488999965 2 4579999 99999999999999999999999999998765
No 406
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=97.75 E-value=1.7e-05 Score=76.98 Aligned_cols=50 Identities=22% Similarity=0.219 Sum_probs=44.5
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 10 ~~l~i~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T PRK10575 10 TTFALRNVSFRVPGRTLLHPL-----SLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQP 62 (265)
T ss_pred ceEEEeeEEEEECCEEEEeee-----eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4799999976 45689999 99999999999999999999999999997654
No 407
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=97.75 E-value=1.5e-05 Score=74.53 Aligned_cols=48 Identities=25% Similarity=0.244 Sum_probs=41.7
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~-----s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~ 51 (213)
T cd03262 1 IEIKNLHKSFGDFHVLKGI-----DLTVKKGEVVVIIGPSGSGKSTLLRCINLLEE 51 (213)
T ss_pred CEEEEEEEEECCeEeecCc-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788865 34688999 99999999999999999999999999997764
No 408
>COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism]
Probab=97.75 E-value=9.5e-05 Score=73.29 Aligned_cols=50 Identities=20% Similarity=0.333 Sum_probs=41.7
Q ss_pred ceeeccccc---cc-ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFA---DD-LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~---~~-~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
-||++|+.+ .. +.+.-+ |.+.+++.+|.|+|..||||||+++.|...+.+
T Consensus 322 ~lelrnvrfay~~~~FhvgPi-----Nl~ikrGelvFliG~NGsGKST~~~LLtGL~~P 375 (546)
T COG4615 322 TLELRNVRFAYQDNAFHVGPI-----NLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQP 375 (546)
T ss_pred ceeeeeeeeccCcccceecce-----eeEEecCcEEEEECCCCCcHHHHHHHHhcccCC
Confidence 478888855 22 566677 889999999999999999999999999987753
No 409
>PRK14238 phosphate transporter ATP-binding protein; Provisional
Probab=97.74 E-value=2.6e-05 Score=75.97 Aligned_cols=50 Identities=16% Similarity=0.242 Sum_probs=44.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ +++...+.+++|.|++|||||||++.|+..+.
T Consensus 23 ~~l~~~~l~~~~~~~~il~~v-----sl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~ 75 (271)
T PRK14238 23 VVFDTQNLNLWYGEDHALKNI-----NLDIHENEVTAIIGPSGCGKSTYIKTLNRMVE 75 (271)
T ss_pred eEEEEeeeEEEECCcceeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcc
Confidence 3689999976 45689999 99999999999999999999999999998763
No 410
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.74 E-value=3e-05 Score=76.51 Aligned_cols=42 Identities=36% Similarity=0.500 Sum_probs=36.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC--CCCCCCH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS--FYHSLTD 75 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~--~~~~~~~ 75 (473)
++.+|+|+||+||||||+|..|++.++ ..+|+.|+ +|+.++.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~---~~iis~Ds~Qvy~~l~i 46 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLN---GEIISADSMQVYRGMDI 46 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCC---CcEEeccccceeecccc
Confidence 357899999999999999999999987 78999998 7776543
No 411
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=97.74 E-value=1.8e-05 Score=75.73 Aligned_cols=49 Identities=14% Similarity=0.241 Sum_probs=42.6
Q ss_pred ceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ + ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~il~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T TIGR02315 1 MLEVENLSKVYPNGKQALKNI-----NLNINPGEFVAIIGPSGAGKSTLLRCINRLVE 53 (243)
T ss_pred CeEEEeeeeecCCCcceeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 478899965 3 3589999 99999999999999999999999999997664
No 412
>PRK14252 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.74 E-value=5.3e-05 Score=73.53 Aligned_cols=50 Identities=16% Similarity=0.095 Sum_probs=44.2
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ .+..++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 15 ~~l~~~~l~~~~~~~~vl~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 67 (265)
T PRK14252 15 QKSEVNKLNFYYGGYQALKNI-----NMMVHEKQVTALIGPSGCGKSTFLRCFNRMHD 67 (265)
T ss_pred ceEEEEEEEEEECCeeeeeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 4789999976 44689999 99999999999999999999999999997653
No 413
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.74 E-value=1.6e-05 Score=74.56 Aligned_cols=50 Identities=14% Similarity=0.160 Sum_probs=44.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 10 ~~l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 62 (214)
T PRK13543 10 PLLAAHALAFSRNEEPVFGPL-----DFHVDAGEALLVQGDNGAGKTTLLRVLAGLLH 62 (214)
T ss_pred ceEEEeeEEEecCCceeeecc-----eEEECCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 4799999976 45689999 99999999999999999999999999997654
No 414
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=97.74 E-value=1.9e-05 Score=75.37 Aligned_cols=49 Identities=22% Similarity=0.225 Sum_probs=43.1
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~il~~~-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 52 (240)
T PRK09493 1 MIEFKNVSKHFGPTQVLHNI-----DLNIDQGEVVVIIGPSGSGKSTLLRCINKLEE 52 (240)
T ss_pred CEEEEeEEEEECCeEEeeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999966 34689999 99999999999999999999999999998764
No 415
>PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional
Probab=97.73 E-value=2.1e-05 Score=76.54 Aligned_cols=51 Identities=14% Similarity=0.256 Sum_probs=43.9
Q ss_pred ccceeeccccc--c----------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D----------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ . ...++++ ++...++.+++|.|++|||||||++.|+..+.
T Consensus 1 ~~~l~~~nl~~~~~~~~~~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 63 (268)
T PRK10419 1 MTLLNVSGLSHHYAHGGLSGKHQHQTVLNNV-----SLSLKSGETVALLGRSGCGKSTLARLLVGLES 63 (268)
T ss_pred CceEEEeceEEEecCCccccccCceeeEece-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 14799999976 3 3578999 99999999999999999999999999997654
No 416
>PRK10908 cell division protein FtsE; Provisional
Probab=97.73 E-value=2.1e-05 Score=74.15 Aligned_cols=49 Identities=20% Similarity=0.240 Sum_probs=42.8
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 53 (222)
T PRK10908 1 MIRFEHVSKAYLGGRQALQGV-----TFHMRPGEMAFLTGHSGAGKSTLLKLICGIER 53 (222)
T ss_pred CEEEEeeEEEecCCCeEEeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 378999965 24589999 99999999999999999999999999997654
No 417
>COG4639 Predicted kinase [General function prediction only]
Probab=97.73 E-value=4.2e-05 Score=66.36 Aligned_cols=35 Identities=17% Similarity=0.269 Sum_probs=27.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
..++++.|+|||||||+|+..-. ...++++|++-.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n~~-----~~~~lsld~~r~ 36 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKENFL-----QNYVLSLDDLRL 36 (168)
T ss_pred ceEEEEecCCCCchhHHHHHhCC-----CcceecHHHHHH
Confidence 46899999999999999996432 277888887753
No 418
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=97.73 E-value=1.9e-05 Score=75.69 Aligned_cols=48 Identities=21% Similarity=0.320 Sum_probs=42.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+|+++|+.+ +...++++ ++..+++.+++|.|++|||||||.+.|+..+
T Consensus 1 ~i~~~nl~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (248)
T PRK09580 1 MLSIKDLHVSVEDKAILRGL-----NLEVRPGEVHAIMGPNGSGKSTLSATLAGRE 51 (248)
T ss_pred CeEEEEEEEEeCCeeeeecc-----eeEEcCCCEEEEECCCCCCHHHHHHHHcCCc
Confidence 488999976 44689999 9999999999999999999999999999863
No 419
>PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional
Probab=97.73 E-value=2e-05 Score=76.61 Aligned_cols=51 Identities=18% Similarity=0.328 Sum_probs=44.9
Q ss_pred ccceeeccccc--c----------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D----------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ + ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~ 64 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPL-----SFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeee-----eEEecCCCEEEEEcCCCCCHHHHHHHHhCCCC
Confidence 46899999976 3 2488999 99999999999999999999999999998764
No 420
>PRK14269 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.73 E-value=1.9e-05 Score=75.75 Aligned_cols=48 Identities=15% Similarity=0.143 Sum_probs=43.2
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+|+++|+++ +...|+++ ++....+.+++|.|++|||||||.+.|+..+
T Consensus 2 ~~~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (246)
T PRK14269 2 IAKTTNLNLFYGKKQALFDI-----NMQIEQNKITALIGASGCGKSTFLRCFNRMN 52 (246)
T ss_pred ceeeeeeEEEECCEeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 689999976 44689999 9999999999999999999999999999865
No 421
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=97.72 E-value=2.3e-05 Score=75.47 Aligned_cols=48 Identities=19% Similarity=0.360 Sum_probs=43.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+|+++|+++ +...++++ ++..+.+.+++|.|++|||||||++.|+..
T Consensus 6 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl 56 (252)
T CHL00131 6 PILEIKNLHASVNENEILKGL-----NLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56 (252)
T ss_pred ceEEEEeEEEEeCCEEeeecc-----eeEEcCCcEEEEECCCCCCHHHHHHHHcCC
Confidence 4799999976 34689999 999999999999999999999999999874
No 422
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=97.72 E-value=2.3e-05 Score=78.47 Aligned_cols=52 Identities=13% Similarity=0.285 Sum_probs=45.3
Q ss_pred ccceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 2 ETVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 2 ~~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
+.+|+++|+++ . ...++++ ++..+++.+++|.|+||||||||++.|+..+..
T Consensus 10 ~~~L~i~~l~~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p 68 (330)
T PRK09473 10 DALLDVKDLRVTFSTPDGDVTAVNDL-----NFSLRAGETLGIVGESGSGKSQTAFALMGLLAA 68 (330)
T ss_pred CceEEEeCeEEEEecCCCCEEEEeee-----EEEEcCCCEEEEECCCCchHHHHHHHHHcCCCC
Confidence 46899999965 1 3579999 999999999999999999999999999987753
No 423
>cd03299 ABC_ModC_like Archeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.72 E-value=5.6e-05 Score=72.00 Aligned_cols=48 Identities=15% Similarity=0.276 Sum_probs=40.9
Q ss_pred eeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ ..+.++++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~ 50 (235)
T cd03299 1 LKVENLSKDWKEFKLKNV-----SLEVERGDYFVILGPTGSGKSVLLETIAGFIK 50 (235)
T ss_pred CeeEeEEEEeCCceeeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46778855 33479999 99999999999999999999999999988654
No 424
>TIGR02770 nickel_nikD nickel import ATP-binding protein NikD. This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous.
Probab=97.72 E-value=5e-05 Score=72.04 Aligned_cols=36 Identities=28% Similarity=0.463 Sum_probs=32.3
Q ss_pred ccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 17 LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 17 l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 2 l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 37 (230)
T TIGR02770 2 VQDL-----NLSLKRGEVLALVGESGSGKSLTCLAILGLLP 37 (230)
T ss_pred ccce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5667 88888999999999999999999999998765
No 425
>TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=97.72 E-value=2.2e-05 Score=75.02 Aligned_cols=49 Identities=18% Similarity=0.205 Sum_probs=43.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ +++.+++.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~i~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 53 (242)
T TIGR03411 2 ILYLEGLSVSFDGFKALNDL-----SLYVDPGELRVIIGPNGAGKTTMMDVITGKTR 53 (242)
T ss_pred eEEEEeeEEEcCCeEEeeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 689999976 44689999 99999999999999999999999999997654
No 426
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.71 E-value=2.1e-05 Score=75.13 Aligned_cols=48 Identities=15% Similarity=0.266 Sum_probs=41.7
Q ss_pred eeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ + ...++++ ++...++.+++|.|++|||||||++.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 52 (241)
T cd03256 1 IEVENLSKTYPNGKKALKDV-----SLSINPGEFVALIGPSGAGKSTLLRCLNGLVE 52 (241)
T ss_pred CEEeeEEEecCCccEEEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCcC
Confidence 46788865 3 4689999 99999999999999999999999999997664
No 427
>TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit. This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc.
Probab=97.71 E-value=4.5e-05 Score=75.53 Aligned_cols=39 Identities=26% Similarity=0.374 Sum_probs=35.4
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
...|+++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 6 ~~~l~~v-----s~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~ 44 (302)
T TIGR01188 6 FKAVDGV-----NFKVREGEVFGFLGPNGAGKTTTIRMLTTLLR 44 (302)
T ss_pred eeEEeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4578899 99999999999999999999999999998764
No 428
>PRK14266 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=2.3e-05 Score=75.31 Aligned_cols=49 Identities=18% Similarity=0.183 Sum_probs=43.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
++|+++|+.+ +...++++ ++....+.+++|.|++|||||||.+.|+...
T Consensus 2 ~~l~~~~v~~~~~~~~~l~~~-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (250)
T PRK14266 2 YRIEVENLNTYFDDAHILKNV-----NLDIPKNSVTALIGPSGCGKSTFIRTLNRMN 53 (250)
T ss_pred cEEEEEeEEEEeCCeEEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhh
Confidence 5799999966 44689999 9999999999999999999999999998754
No 429
>PRK14243 phosphate transporter ATP-binding protein; Provisional
Probab=97.71 E-value=2.6e-05 Score=75.63 Aligned_cols=50 Identities=14% Similarity=0.139 Sum_probs=43.9
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++|+++|+++ ....++++ ++..+.+.+++|.|++|||||||++.|+..++
T Consensus 9 ~~l~i~~v~~~~~~~~il~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 61 (264)
T PRK14243 9 TVLRTENLNVYYGSFLAVKNV-----WLDIPKNQITAFIGPSGCGKSTILRCFNRLND 61 (264)
T ss_pred eEEEEeeeEEEECCEEEeecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHHhhhc
Confidence 4789999976 34689999 99999999999999999999999999997643
No 430
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.71 E-value=3.5e-05 Score=83.16 Aligned_cols=49 Identities=22% Similarity=0.363 Sum_probs=42.3
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+.. +...|+++ ++..+++..++|.|++||||||+++.|+..+.
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i-----~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~ 366 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENV-----NFTLKPGQMLGICGPTGSGKSTLLSLIQRHFD 366 (569)
T ss_pred cEEEEEEEEECCCCCCccccCe-----eEEECCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 478888854 23589999 99999999999999999999999999998775
No 431
>PRK14246 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.71 E-value=2e-05 Score=76.11 Aligned_cols=51 Identities=22% Similarity=0.391 Sum_probs=45.7
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 8 ~~~i~~~~~~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~ 61 (257)
T PRK14246 8 EDVFNISRLYLYINDKAILKDI-----TIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIE 61 (257)
T ss_pred hhheeeeeEEEecCCceeEece-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 47899999976 56789999 99999999999999999999999999997654
No 432
>PRK09700 D-allose transporter ATP-binding protein; Provisional
Probab=97.70 E-value=2.2e-05 Score=83.54 Aligned_cols=52 Identities=15% Similarity=0.142 Sum_probs=46.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~~~~l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 56 (510)
T PRK09700 2 ATPYISMAGIGKSFGPVHALKSV-----NLTVYPGEIHALLGENGAGKSTLMKVLSGIHE 56 (510)
T ss_pred CCceEEEeeeEEEcCCeEEeeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHcCCcC
Confidence 456899999976 44689999 99999999999999999999999999998764
No 433
>TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA. This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c.
Probab=97.70 E-value=2.3e-05 Score=72.59 Aligned_cols=48 Identities=17% Similarity=0.261 Sum_probs=41.9
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (198)
T TIGR01189 1 LAARNLACSRGERMLFEGL-----SFTLNAGEALQVTGPNGIGKTTLLRILAGLLR 51 (198)
T ss_pred CEEEEEEEEECCEEEEeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57788866 45689999 99999999999999999999999999998654
No 434
>PRK14255 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=2.4e-05 Score=75.30 Aligned_cols=49 Identities=16% Similarity=0.150 Sum_probs=43.0
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+|+++|+++ ....++++ ++....+.+++|.|++|||||||++.|+..+
T Consensus 4 ~~l~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (252)
T PRK14255 4 KIITSSDVHLFYGKFEALKGI-----DLDFNQNEITALIGPSGCGKSTYLRTLNRMN 55 (252)
T ss_pred ceEEEEeEEEEECCeeEEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 3689999976 44689999 9999999999999999999999999998754
No 435
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=5e-05 Score=79.01 Aligned_cols=48 Identities=21% Similarity=0.324 Sum_probs=42.1
Q ss_pred eeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++|++. +++.++++ +++.++...++|.|+|||||||+.+.|+..+.
T Consensus 321 i~~~~l~~~y~~g~~~l~~l-----~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~ 372 (559)
T COG4988 321 ISLENLSFRYPDGKPALSDL-----NLTIKAGQLTALVGASGAGKSTLLNLLLGFLA 372 (559)
T ss_pred eeecceEEecCCCCcccCCc-----eeEecCCcEEEEECCCCCCHHHHHHHHhCcCC
Confidence 45568866 34899999 99999999999999999999999999998775
No 436
>PRK14268 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.70 E-value=2.3e-05 Score=75.82 Aligned_cols=50 Identities=16% Similarity=0.197 Sum_probs=44.0
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....|+++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 11 ~~l~~~~l~~~~~~~~il~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~ 63 (258)
T PRK14268 11 PQIKVENLNLWYGEKQALKNV-----SMQIPKNSVTALIGPSGCGKSTFIRCLNRMND 63 (258)
T ss_pred eeEEEeeeEEEeCCeeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5799999976 34589999 99999999999999999999999999997653
No 437
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=97.69 E-value=3.7e-05 Score=63.32 Aligned_cols=46 Identities=20% Similarity=0.198 Sum_probs=36.1
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
...||++ ++..+...+++|.|+|||||||+++.+. . +-..+..|+.
T Consensus 2 ~~aL~~v-----sl~i~~ge~v~I~GpSGsGKSTLl~~l~---~--G~i~~~g~di 47 (107)
T cd00820 2 TTSLHGV-----LVDVYGKVGVLITGDSGIGKTELALELI---K--RKHRLVGDDN 47 (107)
T ss_pred ceEEEee-----EEEEcCCEEEEEEcCCCCCHHHHHHHhh---C--CeEEEeeEeH
Confidence 3567888 8888888999999999999999999987 2 3444555554
No 438
>TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL. Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se.
Probab=97.69 E-value=2.1e-05 Score=74.25 Aligned_cols=49 Identities=14% Similarity=0.244 Sum_probs=42.5
Q ss_pred ceeeccccc--c--------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D--------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~--------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ + ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~ 59 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNV-----SLTVNAGECVALSGPSGAGKSTLLKSLYANYL 59 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecc-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 478999966 2 2479999 99999999999999999999999999998764
No 439
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=97.69 E-value=1.8e-05 Score=74.16 Aligned_cols=48 Identities=17% Similarity=0.236 Sum_probs=41.3
Q ss_pred eeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ + ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~l~~~-----sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 52 (214)
T cd03292 1 IEFINVTKTYPNGTAALDGI-----NISISAGEFVFLVGPSGAGKSTLLKLIYKEEL 52 (214)
T ss_pred CEEEEEEEEeCCCceeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 46788865 2 3689999 99999999999999999999999999998764
No 440
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=97.69 E-value=2.2e-05 Score=78.77 Aligned_cols=50 Identities=14% Similarity=0.286 Sum_probs=44.1
Q ss_pred cceeecccccc-------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFAD-------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++. ...++++ ++...++.+++|.|+||||||||++.|+..+.
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~v-----sl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~ 58 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRV-----SMTLTEGEIRGLVGESGSGKSLIAKAICGVTK 58 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeee-----EEEECCCCEEEEECCCCCCHHHHHHHHHccCC
Confidence 58999999661 3589999 99999999999999999999999999998764
No 441
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=97.69 E-value=2.3e-05 Score=73.17 Aligned_cols=48 Identities=21% Similarity=0.335 Sum_probs=41.8
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~-----~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (208)
T cd03268 1 LKTNDLTKTYGKKRVLDDI-----SLHVKKGEIYGFLGPNGAGKTTTMKIILGLIK 51 (208)
T ss_pred CEEEEEEEEECCeEeEeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCcC
Confidence 57888865 45689999 99999999999999999999999999987654
No 442
>TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein. Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins.
Probab=97.69 E-value=2.3e-05 Score=75.45 Aligned_cols=48 Identities=15% Similarity=0.192 Sum_probs=42.2
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ....++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 i~~~~l~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (252)
T TIGR03005 1 VRFSDVTKRFGILTVLDGL-----NFSVAAGEKVALIGPSGSGKSTILRILMTLEP 51 (252)
T ss_pred CEEEEEEEEeCCeeEEeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 45689999 99999999999999999999999999997654
No 443
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=97.68 E-value=2.4e-05 Score=72.60 Aligned_cols=48 Identities=17% Similarity=0.174 Sum_probs=41.9
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ ++..++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~i~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (201)
T cd03231 1 LEADELTCERDGRALFSGL-----SFTLAAGEALQVTGPNGSGKTTLLRILAGLSP 51 (201)
T ss_pred CEEEEEEEEeCCceeeccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 57888866 45689999 99999999999999999999999999997654
No 444
>PRK14236 phosphate transporter ATP-binding protein; Provisional
Probab=97.68 E-value=2.6e-05 Score=76.06 Aligned_cols=50 Identities=20% Similarity=0.183 Sum_probs=44.2
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++..+++.+++|.|++|||||||++.|+..+.
T Consensus 24 ~~l~~~nl~~~~~~~~il~~v-----s~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~ 76 (272)
T PRK14236 24 TALEVRNLNLFYGDKQALFDI-----SMRIPKNRVTAFIGPSGCGKSTLLRCFNRMND 76 (272)
T ss_pred cEEEEEEEEEEECCeeEeeeE-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4789999976 45689999 99999999999999999999999999998754
No 445
>KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.68 E-value=0.00012 Score=82.54 Aligned_cols=63 Identities=17% Similarity=0.247 Sum_probs=52.8
Q ss_pred cceeeccccc------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCC
Q 035513 3 TVIELADDFA------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFY 70 (473)
Q Consensus 3 ~~i~~~~~~~------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~ 70 (473)
..||++|+.+ +-.+|+++ |...+.+..|+|.|+|||||||+.+.|++.+.+ .|-..++..+..
T Consensus 349 g~ief~nV~FsYPsRpdv~Il~g~-----sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~ 418 (1228)
T KOG0055|consen 349 GEIEFRNVCFSYPSRPDVKILKGV-----SLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIR 418 (1228)
T ss_pred cceEEEEEEecCCCCCcchhhCCe-----EEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccch
Confidence 5799999955 34689999 999999999999999999999999999998864 566777765543
No 446
>COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.68 E-value=3.1e-05 Score=70.61 Aligned_cols=49 Identities=16% Similarity=0.231 Sum_probs=44.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+..|++. ++..|+++ +.....+.+.+|.||+||||||+.+.|...+.
T Consensus 1 mi~a~nls~~~~Gr~ll~~v-----sl~~~pGev~ailGPNGAGKSTlLk~LsGel~ 52 (259)
T COG4559 1 MIRAENLSYSLAGRRLLDGV-----SLDLRPGEVLAILGPNGAGKSTLLKALSGELS 52 (259)
T ss_pred CeeeeeeEEEeecceeccCc-----ceeccCCcEEEEECCCCccHHHHHHHhhCccC
Confidence 588999977 78899999 99999999999999999999999999998775
No 447
>TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion.
Probab=97.68 E-value=5.3e-05 Score=83.72 Aligned_cols=49 Identities=20% Similarity=0.263 Sum_probs=43.0
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. .+..|+++ ++..+++..++|.|++||||||+++.|+..+.
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i-----~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~ 508 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNL-----NLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYT 508 (694)
T ss_pred eEEEEEEEEEcCCCCccccccc-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999955 13479999 99999999999999999999999999998875
No 448
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=97.67 E-value=2.5e-05 Score=73.16 Aligned_cols=47 Identities=21% Similarity=0.336 Sum_probs=40.2
Q ss_pred eeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 6 ELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 6 ~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 50 (213)
T cd03235 1 EVEDLTVSYGGHPVLEDV-----SFEVKPGEFLAIVGPNGAGKSTLLKAILGLLK 50 (213)
T ss_pred CcccceeEECCEEeeecc-----eeEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4677865 34589999 99999999999999999999999999987654
No 449
>PRK15056 manganese/iron transporter ATP-binding protein; Provisional
Probab=97.67 E-value=2.6e-05 Score=75.99 Aligned_cols=50 Identities=20% Similarity=0.279 Sum_probs=44.0
Q ss_pred cceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ++..++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 5 ~~l~~~~l~~~~~~~~~il~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 58 (272)
T PRK15056 5 AGIVVNDVTVTWRNGHTALRDA-----SFTVPGGSIAALVGVNGSGKSTLFKALMGFVR 58 (272)
T ss_pred ceEEEEeEEEEecCCcEEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999966 24589999 99999999999999999999999999997654
No 450
>COG1926 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.66 E-value=0.00017 Score=65.51 Aligned_cols=64 Identities=19% Similarity=0.269 Sum_probs=56.2
Q ss_pred CCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEEEee
Q 035513 359 PADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEI 426 (473)
Q Consensus 359 P~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~~~i 426 (473)
+.+.++++|||+|+=+|||.||.+|++.++.+|. ++|++.+-+++++....+...- .+|+|..+
T Consensus 119 ~~~~~g~~VIlVDDGiATGatm~aAi~~~r~~~~--~~IviAVPV~p~~a~~~l~s~~--D~vvc~~~ 182 (220)
T COG1926 119 VPSLKGRTVILVDDGIATGATMKAAVRALRAKGP--KEIVIAVPVAPEDAAAELESEA--DEVVCLYM 182 (220)
T ss_pred CCCCCCCEEEEEeCCcchhHHHHHHHHHHHhcCC--ceEEEEcccCCHHHHHHHHhhc--CeEEEEcC
Confidence 3478899999999999999999999999999998 7899999999999999999873 46666543
No 451
>COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=97.66 E-value=4e-05 Score=67.49 Aligned_cols=65 Identities=14% Similarity=0.238 Sum_probs=51.0
Q ss_pred Cccceeeccccc----------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCC-EEEEecCC
Q 035513 1 METVIELADDFA----------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQR-VVLVNQDS 68 (473)
Q Consensus 1 m~~~i~~~~~~~----------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~-~~~is~D~ 68 (473)
|...|.++|++| .-..++++ +++.+.+..+++.|+|||||||+.+.|-..|. +.| +.+-+.++
T Consensus 1 m~~~l~v~~~~KtFtlH~q~Gi~LpV~~~v-----slsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~ 75 (235)
T COG4778 1 MPTPLNVSNVSKTFTLHQQGGVRLPVLRNV-----SLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGE 75 (235)
T ss_pred CCceeeeecchhheEeeecCCEEeeeeece-----eEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcc
Confidence 777899999987 23477888 99999999999999999999999999977664 222 33445565
Q ss_pred CC
Q 035513 69 FY 70 (473)
Q Consensus 69 ~~ 70 (473)
+.
T Consensus 76 ~v 77 (235)
T COG4778 76 WV 77 (235)
T ss_pred hh
Confidence 55
No 452
>PRK08558 adenine phosphoribosyltransferase; Provisional
Probab=97.65 E-value=0.00045 Score=65.66 Aligned_cols=97 Identities=20% Similarity=0.243 Sum_probs=63.5
Q ss_pred EEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCc-------------eEEeecCCC--CCCCcEEEEEcccccccHH
Q 035513 315 GISIIRSGESMENALRACCKGIKIGKILIHREGNSGR-------------QLIYQKLPA--DISSRHVLLLDPILASGNS 379 (473)
Q Consensus 315 ~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-------------~~~~~~lP~--~~~~~~v~l~dp~~aTG~t 379 (473)
++.+...|.++...+...+ +++ .+.+.++..... ......+|. -.+|++|+|+|++++||+|
T Consensus 115 Vvtv~~~GI~lA~~lA~~L-~~p--~vi~Rk~~~~~~~~~v~~y~s~s~~~~~~~~l~~~~l~~G~rVLIVDDvi~TG~T 191 (238)
T PRK08558 115 VLTAATDGIPLAVAIASYF-GAD--LVYAKKSKETGVEKFYEEYQRLASGIEVTLYLPASALKKGDRVLIVDDIIRSGET 191 (238)
T ss_pred EEEECcccHHHHHHHHHHH-CcC--EEEEEecCCCCCcceEEEeeccCCCceeEEEecHHHcCCcCEEEEEecccccCHH
Confidence 4556668888887776665 233 444444322111 111122332 2468999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEEeCHHH-HHHHHHhC
Q 035513 380 AVKAISLILSKGVPESNIIFLNLIAAPQG-IHAICKRF 416 (473)
Q Consensus 380 ~~~~~~~L~~~g~~~~~i~~~~~~~~~~g-~~~~~~~~ 416 (473)
+..+++.+++.|+ +-+-+++++...++ .+++.+.+
T Consensus 192 l~~~~~ll~~~ga--~vvgv~vlv~~~~~~~~~l~~~~ 227 (238)
T PRK08558 192 QRALLDLARQAGA--DVVGVFFLIAVGEVGIDRAREET 227 (238)
T ss_pred HHHHHHHHHHcCC--EEEEEEEEEecCchHHHHHhHhc
Confidence 9999999999998 34555555665444 88887654
No 453
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=97.65 E-value=2.5e-05 Score=78.13 Aligned_cols=50 Identities=14% Similarity=0.210 Sum_probs=43.9
Q ss_pred cceeeccccc--c-----------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D-----------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~-----------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...++++ ++..+++.+++|.|+||||||||++.|+..+.
T Consensus 4 ~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~ 66 (327)
T PRK11308 4 PLLQAIDLKKHYPVKRGLFKPERLVKALDGV-----SFTLERGKTLAVVGESGCGKSTLARLLTMIET 66 (327)
T ss_pred ceEEEeeeEEEEcCCCCccccCCceeEEeee-----EEEECCCCEEEEECCCCCcHHHHHHHHHcCCC
Confidence 5899999976 2 2579999 99999999999999999999999999998764
No 454
>PRK14265 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=3.2e-05 Score=75.49 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=43.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+|+++|+.+ +...++++ ++....+.+++|.|++|||||||++.|+..+
T Consensus 19 ~~l~~~nl~~~~~~~~~l~~v-----s~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~ 70 (274)
T PRK14265 19 SVFEVEGVKVFYGGFLALVDV-----HLKIPAKKIIAFIGPSGCGKSTLLRCFNRMN 70 (274)
T ss_pred ceEEEeeEEEEeCCeEEEeee-----eeEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 4899999976 34589999 9999999999999999999999999999764
No 455
>PRK14260 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.65 E-value=3.2e-05 Score=74.78 Aligned_cols=50 Identities=16% Similarity=0.183 Sum_probs=44.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~~~~l~~~~~~~~il~~i-----sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~ 58 (259)
T PRK14260 6 PAIKVKDLSFYYNTSKAIEGI-----SMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE 58 (259)
T ss_pred ceEEEEEEEEEECCeEeecce-----EEEEcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4789999976 34689999 99999999999999999999999999998754
No 456
>PRK14258 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.64 E-value=3e-05 Score=75.07 Aligned_cols=50 Identities=18% Similarity=0.176 Sum_probs=44.5
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....++++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~~~nl~~~~~~~~il~~i-----s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 58 (261)
T PRK14258 6 PAIKVNNLSFYYDTQKILEGV-----SMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE 58 (261)
T ss_pred ceEEEeeEEEEeCCeeEeece-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcccC
Confidence 4789999977 34589999 99999999999999999999999999998764
No 457
>COG0856 Orotate phosphoribosyltransferase homologs [Nucleotide transport and metabolism]
Probab=97.64 E-value=0.00018 Score=62.93 Aligned_cols=89 Identities=15% Similarity=0.322 Sum_probs=62.6
Q ss_pred eeccCchhHHHHHhhcCCceeeEEEEEE------cCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 318 IIRSGESMENALRACCKGIKIGKILIHR------EGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 318 ilraG~~~~~~~~~~~p~a~~g~i~~~r------~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
|--+|.|+..-+...+- + -+.+++ ++.... ..+-..+- .++||.++|+|++++||.|+..+|+.|++.
T Consensus 93 Ia~sGvPlAtmvA~elg-~---elaiY~PrK~~~de~~~~~G~iS~NFa-~V~gK~cvIVDDvittG~Ti~E~Ie~lke~ 167 (203)
T COG0856 93 IAISGVPLATMVAYELG-K---ELAIYHPRKHRKDEGAGKGGSISSNFA-SVEGKRCVIVDDVITTGSTIKETIEQLKEE 167 (203)
T ss_pred EeecCccHHHHHHHHhC-C---ceEEEecccccccccCCcCceeecccc-cccCceEEEEecccccChhHHHHHHHHHHc
Confidence 33488887666555443 1 122332 222221 33444554 588999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCHHHHHHHHH
Q 035513 391 GVPESNIIFLNLIAAPQGIHAICK 414 (473)
Q Consensus 391 g~~~~~i~~~~~~~~~~g~~~~~~ 414 (473)
|.++ +++++++.+.|+..+..
T Consensus 168 g~kp---v~v~VL~dK~G~dei~g 188 (203)
T COG0856 168 GGKP---VLVVVLADKKGVDEIEG 188 (203)
T ss_pred CCCc---EEEEEEEccCCcccccC
Confidence 9754 67889999999887754
No 458
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.64 E-value=2.1e-05 Score=68.97 Aligned_cols=48 Identities=27% Similarity=0.396 Sum_probs=41.1
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ ....++++ ++..+.+.+++|.|++||||||+.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~l~~~-----~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~ 51 (144)
T cd03221 1 IELENLSKTYGGKLLLKDI-----SLTINPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred CEEEEEEEEECCceEEEee-----EEEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 46778855 34689999 89999999999999999999999999987654
No 459
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=97.64 E-value=3.3e-05 Score=73.03 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=43.7
Q ss_pred ccceeeccccc----c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA----D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~----~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++.++++|+.. . ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~l~~v-----sl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 1 QRVLPWWDVGLKAKNWNKYARILNDV-----SLHVESGQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CccceeecceeeeecCccccccccCc-----eEEEcCCeEEEEECCCCCCHHHHHHHHhCccC
Confidence 35678899966 2 4688999 99999999999999999999999999997764
No 460
>TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family. Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown.
Probab=97.64 E-value=0.0001 Score=79.19 Aligned_cols=50 Identities=26% Similarity=0.365 Sum_probs=44.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 321 ~~l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~ 373 (552)
T TIGR03719 321 KVIEAENLSKGFGDKLLIDDL-----SFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQ 373 (552)
T ss_pred eEEEEeeEEEEECCeeeeccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4789999976 35689999 99999999999999999999999999987654
No 461
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=97.63 E-value=2.5e-05 Score=72.65 Aligned_cols=47 Identities=15% Similarity=0.249 Sum_probs=40.1
Q ss_pred eeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 6 ELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 6 ~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|+++ + ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~~~~~~~~l~~v-----~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 51 (205)
T cd03226 1 RIENISFSYKKGTEILDDL-----SLDLYAGEIIALTGKNGAGKTTLAKILAGLIK 51 (205)
T ss_pred CcccEEEEeCCcCceeeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3567755 3 4689999 99999999999999999999999999998654
No 462
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=97.62 E-value=6.1e-05 Score=89.08 Aligned_cols=50 Identities=22% Similarity=0.204 Sum_probs=44.1
Q ss_pred ceeecccccc------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFAD------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~~------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
-|+++||++. .++|+++ ++..+++..++|.|+|||||||+++.|.+.+..
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~l-----sl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp 1220 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDL-----TFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDL 1220 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCe-----eEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 4899999651 2589999 999999999999999999999999999998763
No 463
>TIGR02769 nickel_nikE nickel import ATP-binding protein NikE. This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase.
Probab=97.62 E-value=3.2e-05 Score=75.06 Aligned_cols=49 Identities=16% Similarity=0.353 Sum_probs=43.0
Q ss_pred ceeeccccc--c----------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D----------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~----------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 62 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNV-----SLSIEEGETVGLLGRSGCGKSTLARLLLGLEK 62 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCc-----eeEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999966 2 3589999 99999999999999999999999999998764
No 464
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.62 E-value=0.00011 Score=78.93 Aligned_cols=49 Identities=24% Similarity=0.374 Sum_probs=43.7
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 324 ~l~~~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~ 375 (556)
T PRK11819 324 VIEAENLSKSFGDRLLIDDL-----SFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQ 375 (556)
T ss_pred EEEEEeEEEEECCeeeecce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 789999976 34689999 99999999999999999999999999997653
No 465
>PLN02840 tRNA dimethylallyltransferase
Probab=97.62 E-value=6.8e-05 Score=76.39 Aligned_cols=44 Identities=32% Similarity=0.452 Sum_probs=35.8
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC--CCCCC
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS--FYHSL 73 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~--~~~~~ 73 (473)
....++.+|+|+|++||||||++..|+++++ ..+|+.|. +|+.+
T Consensus 16 ~~~~~~~vi~I~GptgsGKTtla~~La~~~~---~~iis~Ds~qvYr~~ 61 (421)
T PLN02840 16 SKTKKEKVIVISGPTGAGKSRLALELAKRLN---GEIISADSVQVYRGL 61 (421)
T ss_pred ccccCCeEEEEECCCCCCHHHHHHHHHHHCC---CCeEeccccceecce
Confidence 3444567899999999999999999999997 67888887 55544
No 466
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=97.62 E-value=3e-05 Score=71.59 Aligned_cols=49 Identities=14% Similarity=0.228 Sum_probs=40.6
Q ss_pred ceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....+.++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~l~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 51 (195)
T PRK13541 1 MLSLHQLQFNIEQKNLFDL-----SITFLPSAITYIKGANGCGKSSLLRMIAGIMQ 51 (195)
T ss_pred CeEEEEeeEEECCcEEEEE-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 378899976 33445557 88899999999999999999999999998754
No 467
>PRK14254 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.62 E-value=3.2e-05 Score=75.94 Aligned_cols=50 Identities=28% Similarity=0.288 Sum_probs=44.3
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ....|+++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 38 ~~l~i~~l~~~~~~~~il~~i-----s~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~ 90 (285)
T PRK14254 38 TVIEARDLNVFYGDEQALDDV-----SMDIPENQVTAMIGPSGCGKSTFLRCINRMND 90 (285)
T ss_pred ceEEEEEEEEEECCEeeEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4789999966 45689999 99999999999999999999999999997753
No 468
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=97.62 E-value=3e-05 Score=72.15 Aligned_cols=48 Identities=17% Similarity=0.373 Sum_probs=41.6
Q ss_pred eeeccccc---c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ . ...++++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~-----s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~ 56 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDI-----NLEVPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred CEEeEEEEecCCCCccccceeeee-----eEEECCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 56888865 2 2589999 99999999999999999999999999998764
No 469
>TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR). The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se.
Probab=97.61 E-value=7.5e-05 Score=88.76 Aligned_cols=56 Identities=20% Similarity=0.290 Sum_probs=46.7
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i 64 (473)
-|+++|++. ...+|+++ ++..+.+..|+|+|.+|||||||++.|.+.+...|-..+
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~i-----s~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~~~G~I~I 1277 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDL-----SFSVEGGQRVGLLGRTGSGKSTLLSALLRLLSTEGEIQI 1277 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeecc-----EEEEcCCCEEEEECCCCCCHHHHHHHHhhhcCCCcEEEE
Confidence 589999965 25689999 999999999999999999999999999987754343333
No 470
>PRK14264 phosphate ABC transporter ATP-binding protein; Provisional
Probab=97.61 E-value=3.7e-05 Score=76.19 Aligned_cols=50 Identities=20% Similarity=0.254 Sum_probs=44.3
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..+|+++|+.+ ....|+++ ++....+.+++|.|++|||||||++.|+..+
T Consensus 43 ~~~l~i~nl~~~~~~~~iL~~i-----s~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~ 95 (305)
T PRK14264 43 DAKLSVEDLDVYYGDDHALKGV-----SMDIPEKSVTALIGPSGCGKSTFLRCLNRMN 95 (305)
T ss_pred CceEEEEEEEEEeCCeeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhccc
Confidence 45799999966 45689999 9999999999999999999999999999765
No 471
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=97.61 E-value=3.7e-05 Score=72.71 Aligned_cols=50 Identities=20% Similarity=0.286 Sum_probs=43.9
Q ss_pred cceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 10 ~~l~~~~l~~~~~~~~~~~~l~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 65 (226)
T cd03248 10 GIVKFQNVTFAYPTRPDTLVLQDV-----SFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65 (226)
T ss_pred ceEEEEEEEEEeCCCCCCccccce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 5789999966 2 2589999 99999999999999999999999999998764
No 472
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=97.60 E-value=3.1e-05 Score=75.15 Aligned_cols=50 Identities=10% Similarity=0.079 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 6 ~~l~i~~l~~~~~~~~~l~~i-----sl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 58 (265)
T PRK10253 6 ARLRGEQLTLGYGKYTVAENL-----TVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMT 58 (265)
T ss_pred cEEEEEEEEEEECCEEEeeec-----ceEECCCCEEEEECCCCCCHHHHHHHHcCCCC
Confidence 4789999976 45689999 99999999999999999999999999998764
No 473
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=97.60 E-value=0.00032 Score=69.40 Aligned_cols=57 Identities=12% Similarity=0.268 Sum_probs=48.7
Q ss_pred cCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEE--EEeCHHHHHHHHHh
Q 035513 357 KLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLN--LIAAPQGIHAICKR 415 (473)
Q Consensus 357 ~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~--~~~~~~g~~~~~~~ 415 (473)
.+..+++|++|+|+|+|++||+|+..+.+.|+++|+ ++|.+++ -+-+.++++++.+.
T Consensus 223 ~~~~dv~gr~vlIVDDIidTG~Tl~~aa~~L~~~Ga--~~V~~~~THglfs~~a~~~l~~~ 281 (326)
T PLN02297 223 IKEGNPAGRHVVIVDDLVQSGGTLIECQKVLAAHGA--AKVSAYVTHGVFPNESWERFTHD 281 (326)
T ss_pred ecccccCCCeEEEEecccCcHHHHHHHHHHHHHCCC--cEEEEEEECcccChhHHHHHHhc
Confidence 345578999999999999999999999999999999 6787777 45677888888763
No 474
>COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism]
Probab=97.60 E-value=3.4e-05 Score=72.00 Aligned_cols=63 Identities=16% Similarity=0.287 Sum_probs=52.0
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSF 69 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~ 69 (473)
+.+++++++++ +-..++++ |....++.+++|.||+||||||+-+.+...+.+ .|-..+...++
T Consensus 2 ~~lL~v~~l~k~FGGl~Al~~V-----sl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~i 68 (250)
T COG0411 2 TPLLEVRGLSKRFGGLTAVNDV-----SLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDI 68 (250)
T ss_pred CceeeeccceeecCCEEEEece-----eEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCccc
Confidence 35789999987 56689999 999999999999999999999999999988864 34555544443
No 475
>PLN03232 ABC transporter C family member; Provisional
Probab=97.60 E-value=4.6e-05 Score=90.69 Aligned_cols=49 Identities=20% Similarity=0.297 Sum_probs=43.7
Q ss_pred ceeeccccc----c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. + +.+|+++ |...+++..|+|+|++||||||+++.|.+.+.
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~i-----sl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~ 1287 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGL-----SFFVSPSEKVGVVGRTGAGKSSMLNALFRIVE 1287 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 589999965 2 3589999 99999999999999999999999999998764
No 476
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=97.59 E-value=3.2e-05 Score=72.99 Aligned_cols=48 Identities=23% Similarity=0.358 Sum_probs=41.7
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+.+ +...++++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 l~l~~v~~~~~~~~~l~~v-----s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~ 51 (223)
T TIGR03740 1 LETKNLSKRFGKQTAVNNI-----SLTVPKNSVYGLLGPNGAGKSTLLKMITGILR 51 (223)
T ss_pred CEEEeEEEEECCEEEEeee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhCCCC
Confidence 56788866 45689999 99999999999999999999999999998764
No 477
>PLN02748 tRNA dimethylallyltransferase
Probab=97.59 E-value=9.1e-05 Score=76.77 Aligned_cols=46 Identities=30% Similarity=0.411 Sum_probs=39.0
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC--CCCCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS--FYHSLT 74 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~--~~~~~~ 74 (473)
..+.+++.+|+|+|++||||||||..|+++++ ..+|+.|. +|+.+.
T Consensus 16 ~~~~~~~~~i~i~GptgsGKs~la~~la~~~~---~eii~~DsmQVYrgLd 63 (468)
T PLN02748 16 PKQKGKAKVVVVMGPTGSGKSKLAVDLASHFP---VEIINADSMQVYSGLD 63 (468)
T ss_pred cccCCCCCEEEEECCCCCCHHHHHHHHHHhcC---eeEEcCchheeeCCcc
Confidence 34455667999999999999999999999997 89999995 887654
No 478
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=97.58 E-value=0.00048 Score=63.28 Aligned_cols=29 Identities=21% Similarity=0.255 Sum_probs=25.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQR 60 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~ 60 (473)
|.+|+|+|.++|||||.|+.|.+++.+.+
T Consensus 1 MpLVvi~G~P~SGKstrA~~L~~~l~~~~ 29 (281)
T KOG3062|consen 1 MPLVVICGLPCSGKSTRAVELREALKERG 29 (281)
T ss_pred CCeEEEeCCCCCCchhHHHHHHHHHHhhc
Confidence 35899999999999999999999987533
No 479
>COG2236 Predicted phosphoribosyltransferases [General function prediction only]
Probab=97.58 E-value=0.00023 Score=64.79 Aligned_cols=83 Identities=17% Similarity=0.181 Sum_probs=63.1
Q ss_pred eeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCC----ceEEeecCCCC-CCCcEEEEEcccccccHHHHHHHHH
Q 035513 312 RLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSG----RQLIYQKLPAD-ISSRHVLLLDPILASGNSAVKAISL 386 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~----~~~~~~~lP~~-~~~~~v~l~dp~~aTG~t~~~~~~~ 386 (473)
+=++|.|.|+|.-...-+.+.+--.++..+.+..=.++. .......+|-+ +.|++|+|+|++..||.|+..|.+.
T Consensus 30 PDvIiaiaRGG~~pariLsd~L~~~~l~~i~v~~y~~~~~~~~~~~v~~~~~~d~l~GkkVLIVDDI~DTG~Tl~~a~~~ 109 (192)
T COG2236 30 PDVIVAIARGGLIPARILSDFLGVKPLYSIKVEHYDETAERDGEAKVKYPITIDPLSGKKVLIVDDIVDTGETLELALEE 109 (192)
T ss_pred CCEEEEEcCCceehHHHHHHHhCCCceEEEEEEEehhhcccCCcceeecCccccccCCCeEEEEecccCchHhHHHHHHH
Confidence 447889999999999999999876676677776533322 22333344445 8899999999999999999999999
Q ss_pred HHhcCCCC
Q 035513 387 ILSKGVPE 394 (473)
Q Consensus 387 L~~~g~~~ 394 (473)
|++....+
T Consensus 110 l~~~~p~e 117 (192)
T COG2236 110 LKKLAPAE 117 (192)
T ss_pred HHhhCchh
Confidence 99954433
No 480
>PRK13651 cobalt transporter ATP-binding subunit; Provisional
Probab=97.58 E-value=3.9e-05 Score=75.97 Aligned_cols=49 Identities=24% Similarity=0.291 Sum_probs=43.2
Q ss_pred ceeeccccc--c-c-----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D-D-----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~-~-----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . . ..|+++ ++...++.+++|.|++|||||||++.|+..+.
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~v-----sl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~ 58 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNV-----SVEINQGEFIAIIGQTGSGKTTFIEHLNALLL 58 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeee-----EEEEeCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999976 2 1 489999 99999999999999999999999999998764
No 481
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.57 E-value=3.9e-05 Score=72.67 Aligned_cols=48 Identities=25% Similarity=0.346 Sum_probs=42.1
Q ss_pred eeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ . ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 3 l~~~~l~~~~~~~~~~l~~i-----sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~ 54 (229)
T cd03254 3 IEFENVNFSYDEKKPVLKDI-----NFSIKPGETVAIVGPTGAGKTTLINLLMRFYD 54 (229)
T ss_pred EEEEEEEEecCCCCccccce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 68889966 2 3589999 99999999999999999999999999998764
No 482
>PLN03130 ABC transporter C family member; Provisional
Probab=97.57 E-value=0.00011 Score=87.84 Aligned_cols=131 Identities=23% Similarity=0.334 Sum_probs=83.9
Q ss_pred ceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-C--------CEEEEecCC
Q 035513 4 VIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-Q--------RVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~--------~~~~is~D~ 68 (473)
.|+++|++. . ...|+++ |...+++.+++|.|++|||||||.+.|...+.. . .+.+++++.
T Consensus 614 ~I~~~nvsf~y~~~~~~~vL~~i-----nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l~~~Iayv~Q~p 688 (1622)
T PLN03130 614 AISIKNGYFSWDSKAERPTLSNI-----NLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVS 688 (1622)
T ss_pred ceEEEeeEEEccCCCCCceeece-----eEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEEcCeEEEEcCcc
Confidence 588899855 2 3579999 999999999999999999999999999988753 2 256677777
Q ss_pred CCCCCCHHHHhhccCccCCCCccccHHHHHHHHH---------HhhcCCceec----cccccccccccccccc-cCCCcE
Q 035513 69 FYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDME---------KLKHGQAVSI----PDYDFKSHKRKQQSRL-INPSDV 134 (473)
Q Consensus 69 ~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~---------~l~~g~~i~~----p~~~~~~~~~~~~~~~-~~~~~v 134 (473)
+...-+-++. ..|..+ +|.+.+.+.++ .+-.|....+ -..+...++|+.-++. ..++++
T Consensus 689 ~LfngTIreN-----I~fg~~--~d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~~~I 761 (1622)
T PLN03130 689 WIFNATVRDN-----ILFGSP--FDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDV 761 (1622)
T ss_pred ccCCCCHHHH-----HhCCCc--ccHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCCCCE
Confidence 7644433322 223332 23344444332 2322222111 1244445555555544 467899
Q ss_pred EEEecccccCCh
Q 035513 135 FILEGILVLHDP 146 (473)
Q Consensus 135 iIlEG~~~l~~~ 146 (473)
+++|.+....++
T Consensus 762 lLLDEptSALD~ 773 (1622)
T PLN03130 762 YIFDDPLSALDA 773 (1622)
T ss_pred EEECCCccccCH
Confidence 999987777665
No 483
>COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.57 E-value=6.3e-05 Score=64.92 Aligned_cols=49 Identities=16% Similarity=0.249 Sum_probs=43.0
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++.++|++- +.-.|.++ |.+..++.++.++|||||||||+......++.
T Consensus 2 ~l~l~nvsl~l~g~cLLa~~-----n~Tia~GeivtlMGPSGcGKSTLls~~~G~La 53 (213)
T COG4136 2 MLCLKNVSLRLPGSCLLANV-----NFTIAKGEIVTLMGPSGCGKSTLLSWMIGALA 53 (213)
T ss_pred ceeeeeeeecCCCceEEEee-----eEEecCCcEEEEECCCCccHHHHHHHHHhhcc
Confidence 578889855 56688889 99999999999999999999999999988764
No 484
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=97.57 E-value=3.6e-05 Score=82.75 Aligned_cols=51 Identities=16% Similarity=0.172 Sum_probs=45.3
Q ss_pred ccceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.++|+++|+++ + ...++++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 4 ~~~l~i~~l~~~y~~~~~il~~v-----s~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~ 58 (556)
T PRK11819 4 QYIYTMNRVSKVVPPKKQILKDI-----SLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDK 58 (556)
T ss_pred cEEEEEeeEEEEeCCCCeeeeCc-----eEEECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35999999976 3 4589999 99999999999999999999999999998764
No 485
>TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein. This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter.
Probab=97.57 E-value=3.4e-05 Score=74.44 Aligned_cols=48 Identities=21% Similarity=0.316 Sum_probs=42.4
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +...|+++ ++....+.+++|.|++|||||||.+.|+..++
T Consensus 2 l~~~~l~~~~~~~~il~~i-----s~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~ 52 (256)
T TIGR03873 2 LRLSRVSWSAGGRLIVDGV-----DVTAPPGSLTGLLGPNGSGKSTLLRLLAGALR 52 (256)
T ss_pred ceEEeEEEEECCEEEEeee-----eEEEcCCcEEEEECCCCCCHHHHHHHHcCCCC
Confidence 57888866 45689999 99999999999999999999999999998664
No 486
>COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.57 E-value=0.00014 Score=67.74 Aligned_cols=50 Identities=22% Similarity=0.354 Sum_probs=45.8
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+++++++| ++..+.++ ++....+.+.|+.|++|+||||.-+.|...+..
T Consensus 2 ~L~ie~vtK~Fg~k~av~~i-----sf~v~~G~i~GllG~NGAGKTTtfRmILglle~ 54 (300)
T COG4152 2 ALEIEGVTKSFGDKKAVDNI-----SFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEP 54 (300)
T ss_pred ceEEecchhccCceeeecce-----eeeecCCeEEEeecCCCCCccchHHHHhccCCc
Confidence 689999977 78899999 999999999999999999999999999887753
No 487
>PRK10535 macrolide transporter ATP-binding /permease protein; Provisional
Probab=97.57 E-value=0.00014 Score=79.59 Aligned_cols=52 Identities=21% Similarity=0.280 Sum_probs=46.2
Q ss_pred Cccceeecccccc-------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFAD-------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~~-------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++. ...++++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~~~~l~~~nl~~~y~~~~~~~~il~~v-----s~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 59 (648)
T PRK10535 1 MTALLELKDIRRSYPSGEEQVEVLKGI-----SLDIYAGEMVAIVGASGSGKSTLMNILGCLDK 59 (648)
T ss_pred CCcEEEEeeEEEEeCCCCCCeeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 7789999999762 2479999 99999999999999999999999999998764
No 488
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=97.57 E-value=7.9e-05 Score=75.56 Aligned_cols=59 Identities=12% Similarity=0.255 Sum_probs=48.9
Q ss_pred cceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEec
Q 035513 3 TVIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQ 66 (473)
Q Consensus 3 ~~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~ 66 (473)
+-|+++|+.. ++..|+++ |+....+..|++.|+||+||||+.+.|-+.+. ..|...++.
T Consensus 536 G~i~fsnvtF~Y~p~k~vl~di-----sF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDg 599 (790)
T KOG0056|consen 536 GKIEFSNVTFAYDPGKPVLSDI-----SFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDG 599 (790)
T ss_pred CeEEEEEeEEecCCCCceeecc-----eEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcC
Confidence 4589999955 78899999 99999999999999999999999999988765 233444443
No 489
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=97.56 E-value=0.00027 Score=63.14 Aligned_cols=123 Identities=17% Similarity=0.264 Sum_probs=70.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecCCCCCCCCHHH-----Hhhc---------cCccCC-CC--
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQDSFYHSLTDEK-----LQNL---------HDYNFD-HP-- 89 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D~~~~~~~~~~-----~~~~---------~~~~f~-~~-- 89 (473)
......+++|.|+|||||||+.+.++.... ..|...|+..+.-..-..+. ..+. .+..++ +|
T Consensus 21 ~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~~RPVSmlFQEnNLFaHLtV~qNigLGl~P~L 100 (231)
T COG3840 21 TVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGL 100 (231)
T ss_pred eecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcccCChhhhhhccccchhhhhhhhhcccCCccc
Confidence 556778999999999999999999998643 34555665544332111110 0000 001111 12
Q ss_pred --ccccHHHHHHHHHHhhcCCc-eecc-ccccccccccccccc-cCCCcEEEEecccccCChhhhh
Q 035513 90 --DAFDTELLLSDMEKLKHGQA-VSIP-DYDFKSHKRKQQSRL-INPSDVFILEGILVLHDPRVRD 150 (473)
Q Consensus 90 --~~~d~~~l~~~l~~l~~g~~-i~~p-~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~~~~~ 150 (473)
.+.+.+.+...+....-... -..| ..+...++|+..++. .....++++|.++...+|.++.
T Consensus 101 kL~a~~r~~v~~aa~~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilLLDEPFsALdP~LR~ 166 (231)
T COG3840 101 KLNAEQREKVEAAAAQVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRA 166 (231)
T ss_pred ccCHHHHHHHHHHHHHhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEEecCchhhcCHHHHH
Confidence 24445555554443322111 1122 456666677665555 4567899999999988886643
No 490
>PLN03130 ABC transporter C family member; Provisional
Probab=97.56 E-value=6e-05 Score=90.01 Aligned_cols=49 Identities=18% Similarity=0.312 Sum_probs=43.6
Q ss_pred ceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. + ..+|+++ |+..+++..|||+|++||||||+++.|.+.+.
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~i-----s~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~ 1290 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGL-----SFEISPSEKVGIVGRTGAGKSSMLNALFRIVE 1290 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCcCC
Confidence 589999965 2 3589999 99999999999999999999999999998764
No 491
>PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.56 E-value=3.9e-05 Score=76.50 Aligned_cols=51 Identities=14% Similarity=0.309 Sum_probs=44.5
Q ss_pred ccceeeccccc--c------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+|+++|+++ . ...|+++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 19 ~~~l~~~nl~~~y~~~~~~~~~~L~~v-----sl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~ 77 (320)
T PRK13631 19 DIILRVKNLYCVFDEKQENELVALNNI-----SYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIK 77 (320)
T ss_pred CceEEEEeEEEEeCCCCcccccceeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35799999976 2 1489999 99999999999999999999999999998764
No 492
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.56 E-value=0.0004 Score=59.06 Aligned_cols=39 Identities=26% Similarity=0.373 Sum_probs=31.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~ 70 (473)
+..+.|.|++||||||+++.|+..+... .+.+++.+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEcc
Confidence 3578999999999999999999998865 46777666544
No 493
>PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=3.6e-05 Score=75.12 Aligned_cols=49 Identities=16% Similarity=0.213 Sum_probs=42.9
Q ss_pred ceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . ...++++ ++....+.+++|.|++||||||+.+.|+..+.
T Consensus 1 ~l~~~~l~~~~~~~~~~l~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~ 53 (275)
T PRK13639 1 ILETRDLKYSYPDGTEALKGI-----NFKAEKGEMVALLGPNGAGKSTLFLHFNGILK 53 (275)
T ss_pred CEEEEEEEEEeCCCCeeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999966 2 3489999 99999999999999999999999999997664
No 494
>PLN03232 ABC transporter C family member; Provisional
Probab=97.55 E-value=7.5e-05 Score=88.86 Aligned_cols=131 Identities=21% Similarity=0.333 Sum_probs=83.3
Q ss_pred ceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---------CCEEEEecCC
Q 035513 4 VIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD---------QRVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~---------~~~~~is~D~ 68 (473)
.|+++|++. . +..|+++ |...+++..++|.|++|||||||.+.|...+.. ..+.+++++.
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~i-----nl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~~~~~Iayv~Q~p 688 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDI-----NLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRGSVAYVPQVS 688 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEEecCcEEEEcCcc
Confidence 588999855 2 3579999 999999999999999999999999999987753 1256777777
Q ss_pred CCCCCCHHHHhhccCccCCCCccccHHHHHHHHH---------HhhcCCceec----cccccccccccccccc-cCCCcE
Q 035513 69 FYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDME---------KLKHGQAVSI----PDYDFKSHKRKQQSRL-INPSDV 134 (473)
Q Consensus 69 ~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~---------~l~~g~~i~~----p~~~~~~~~~~~~~~~-~~~~~v 134 (473)
+...-+-++ + ..|..+ ++.+.+.+.++ .+-.|-...+ -..+...++|+.-++. ..++++
T Consensus 689 ~Lf~gTIre--N---I~fg~~--~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly~~~~I 761 (1495)
T PLN03232 689 WIFNATVRE--N---ILFGSD--FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDI 761 (1495)
T ss_pred ccccccHHH--H---hhcCCc--cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHhcCCCE
Confidence 764433322 1 123332 34444444433 2222211111 1234444555554444 467899
Q ss_pred EEEecccccCCh
Q 035513 135 FILEGILVLHDP 146 (473)
Q Consensus 135 iIlEG~~~l~~~ 146 (473)
+++|.+....|+
T Consensus 762 lLLDEptSaLD~ 773 (1495)
T PLN03232 762 YIFDDPLSALDA 773 (1495)
T ss_pred EEEcCCccccCH
Confidence 999998877775
No 495
>PRK03695 vitamin B12-transporter ATPase; Provisional
Probab=97.55 E-value=7.4e-05 Score=71.78 Aligned_cols=54 Identities=15% Similarity=0.223 Sum_probs=43.4
Q ss_pred eeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE
Q 035513 5 IELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64 (473)
Q Consensus 5 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i 64 (473)
++++||.+.. .|+++ ++....+.+++|.|++|||||||.+.|+..++..|-..+
T Consensus 1 ~~~~~l~~~~-~l~~v-----sl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~~G~i~~ 54 (248)
T PRK03695 1 MQLNDVAVST-RLGPL-----SAEVRAGEILHLVGPNGAGKSTLLARMAGLLPGSGSIQF 54 (248)
T ss_pred Ccccccchhc-eecce-----EEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCeEEEE
Confidence 4678887653 78899 999999999999999999999999999976643343334
No 496
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=4e-05 Score=72.83 Aligned_cols=48 Identities=21% Similarity=0.287 Sum_probs=41.2
Q ss_pred eeeccccc---cc--ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA---DD--LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~---~~--~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ +. ..++++ ++..+.+.+++|.|++|||||||++.|+..+.
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i-----~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDI-----SLDIPAGETVALVGPSGSGKSTLVNLIPRFYD 53 (234)
T ss_pred CEEEEEEEEeCCCCccceeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcccc
Confidence 46788865 22 589999 99999999999999999999999999998764
No 497
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=97.55 E-value=3.5e-05 Score=75.71 Aligned_cols=49 Identities=20% Similarity=0.234 Sum_probs=42.9
Q ss_pred ceeeccccc--c-c-----ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D-D-----LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~-~-----~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ . . ..|+++ ++...++.+++|.|++|||||||++.|+..+.
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~v-----sl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~ 57 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDI-----DLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQ 57 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeee-----EEEEcCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 488999966 2 1 489999 99999999999999999999999999998764
No 498
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=97.55 E-value=4e-05 Score=74.98 Aligned_cols=50 Identities=18% Similarity=0.304 Sum_probs=44.5
Q ss_pred cceeeccccc-ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA-DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ ....|+++ ++....+.+++|.|++|||||||++.|+..+.
T Consensus 38 ~~l~i~nls~~~~~vL~~v-----s~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~ 88 (282)
T cd03291 38 NNLFFSNLCLVGAPVLKNI-----NLKIEKGEMLAITGSTGSGKTSLLMLILGELE 88 (282)
T ss_pred CeEEEEEEEEecccceeee-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999976 55689999 99999999999999999999999999998764
No 499
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.55 E-value=7.7e-05 Score=66.28 Aligned_cols=46 Identities=20% Similarity=0.296 Sum_probs=37.8
Q ss_pred eccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 7 LADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 7 ~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++|+.+ +...++++ ++...++.+++|.|++||||||+.+.|+..+.
T Consensus 2 ~~~~~~~~~~~~~l~~~-----~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 2 IENLSFRYGGRTALDNV-----SLTLKAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred eEEEEEEeCCeeeEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 455544 34578888 88888999999999999999999999987654
No 500
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=97.55 E-value=0.0001 Score=65.07 Aligned_cols=47 Identities=19% Similarity=0.267 Sum_probs=42.0
Q ss_pred ceeeccccc-------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 4 VIELADDFA-------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 4 ~i~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.|+++++.+ .-.+|+++ +...+.+..|+|.|+|||||||+...|+..
T Consensus 6 ii~~~~l~ktvg~~~~~l~IL~~V-----~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGL 59 (228)
T COG4181 6 IIEVHHLSKTVGQGEGELSILKGV-----ELVVKRGETVAIVGPSGSGKSTLLAVLAGL 59 (228)
T ss_pred eeehhhhhhhhcCCCcceeEeecc-----eEEecCCceEEEEcCCCCcHHhHHHHHhcC
Confidence 799999977 34589999 999999999999999999999999999864
Done!