Query 035513
Match_columns 473
No_of_seqs 328 out of 2877
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:18:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035513.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035513hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3dmp_A Uracil phosphoribosyltr 100.0 1E-63 3.4E-68 461.8 16.5 208 241-451 8-216 (217)
2 1bd3_D Uprtase, uracil phospho 100.0 5.9E-62 2E-66 457.0 20.8 217 235-451 26-243 (243)
3 1xtt_A Probable uracil phospho 100.0 9.2E-61 3.1E-65 442.2 19.0 203 243-449 2-216 (216)
4 2ehj_A Uracil phosphoribosyltr 100.0 6.4E-60 2.2E-64 434.6 19.1 205 243-451 2-208 (208)
5 1v9s_A Uracil phosphoribosyltr 100.0 7E-60 2.4E-64 434.3 17.9 205 243-451 2-208 (208)
6 1o5o_A Uracil phosphoribosyltr 100.0 8.9E-59 3.1E-63 429.9 18.9 206 242-451 14-221 (221)
7 2e55_A Uracil phosphoribosyltr 100.0 9.6E-57 3.3E-61 413.4 21.0 203 244-451 2-206 (208)
8 1i5e_A Uracil phosphoribosyltr 100.0 4E-54 1.4E-58 399.3 19.1 206 242-451 2-209 (209)
9 1uj2_A Uridine-cytidine kinase 99.9 8.1E-24 2.8E-28 202.6 13.8 208 26-233 16-232 (252)
10 3tqc_A Pantothenate kinase; bi 99.9 3.1E-22 1.1E-26 196.8 15.8 188 28-217 88-311 (321)
11 3asz_A Uridine kinase; cytidin 99.9 3.4E-22 1.2E-26 185.7 15.3 205 29-234 3-207 (211)
12 2jeo_A Uridine-cytidine kinase 99.9 3.1E-21 1.1E-25 183.8 18.0 216 13-234 11-235 (245)
13 1a7j_A Phosphoribulokinase; tr 99.8 2.2E-21 7.6E-26 189.2 11.0 184 30-214 3-215 (290)
14 1sq5_A Pantothenate kinase; P- 99.8 5.5E-21 1.9E-25 188.3 9.4 186 30-217 78-299 (308)
15 3aez_A Pantothenate kinase; tr 99.8 1.5E-18 5E-23 170.7 17.8 187 29-217 87-302 (312)
16 3c8u_A Fructokinase; YP_612366 99.8 1E-18 3.5E-23 162.1 15.2 181 29-213 19-207 (208)
17 2ga8_A Hypothetical 39.9 kDa p 99.8 2.5E-18 8.7E-23 169.6 11.0 149 61-213 156-350 (359)
18 1odf_A YGR205W, hypothetical 3 99.7 1.4E-18 4.8E-23 169.1 8.5 183 28-214 27-276 (290)
19 1rz3_A Hypothetical protein rb 99.7 5E-18 1.7E-22 156.6 6.1 176 28-214 18-200 (201)
20 4i1u_A Dephospho-COA kinase; s 99.7 6.9E-18 2.4E-22 155.5 0.3 179 31-228 8-199 (210)
21 2qt1_A Nicotinamide riboside k 99.7 2E-16 6.8E-21 146.3 9.3 185 27-229 16-204 (207)
22 2grj_A Dephospho-COA kinase; T 99.6 4.7E-17 1.6E-21 148.7 3.2 165 31-227 11-183 (192)
23 2f6r_A COA synthase, bifunctio 99.6 8.7E-16 3E-20 149.0 6.0 186 28-229 71-267 (281)
24 1vht_A Dephospho-COA kinase; s 99.5 1.2E-14 4.2E-19 135.3 7.6 182 31-231 3-195 (218)
25 1jjv_A Dephospho-COA kinase; P 99.5 5.3E-15 1.8E-19 136.5 4.1 168 32-218 2-180 (206)
26 2if2_A Dephospho-COA kinase; a 99.5 1.5E-14 5E-19 133.2 4.4 178 33-229 2-190 (204)
27 1uf9_A TT1252 protein; P-loop, 99.5 2.3E-14 7.8E-19 131.5 4.2 180 29-229 5-192 (203)
28 3vaa_A Shikimate kinase, SK; s 99.4 4.5E-14 1.5E-18 129.7 5.3 176 13-232 11-197 (199)
29 3lw7_A Adenylate kinase relate 99.4 1.3E-13 4.6E-18 122.9 5.7 171 33-230 2-176 (179)
30 4e22_A Cytidylate kinase; P-lo 99.4 7.1E-13 2.4E-17 126.4 9.8 196 28-232 23-246 (252)
31 1cke_A CK, MSSA, protein (cyti 99.4 1E-13 3.6E-18 129.5 3.7 182 32-230 5-222 (227)
32 1ukz_A Uridylate kinase; trans 99.4 1.1E-12 3.7E-17 120.6 10.3 174 25-229 8-200 (203)
33 3r20_A Cytidylate kinase; stru 99.4 3.7E-13 1.3E-17 126.1 6.2 192 29-232 6-229 (233)
34 1tev_A UMP-CMP kinase; ploop, 99.4 4.4E-13 1.5E-17 121.8 6.0 176 31-228 2-192 (196)
35 2bwj_A Adenylate kinase 5; pho 99.4 1.3E-13 4.3E-18 126.1 2.3 121 30-174 10-138 (199)
36 1qf9_A UMP/CMP kinase, protein 99.4 9.9E-13 3.4E-17 119.3 8.2 171 30-228 4-189 (194)
37 3nwj_A ATSK2; P loop, shikimat 99.4 7.2E-14 2.5E-18 132.7 0.6 61 3-71 16-84 (250)
38 3t61_A Gluconokinase; PSI-biol 99.3 3.4E-12 1.2E-16 117.2 10.8 160 28-229 14-178 (202)
39 3ake_A Cytidylate kinase; CMP 99.3 5.8E-13 2E-17 122.5 4.9 173 34-228 4-206 (208)
40 3trf_A Shikimate kinase, SK; a 99.3 4.3E-13 1.5E-17 121.3 2.7 162 32-233 5-177 (185)
41 1y63_A LMAJ004144AAA protein; 99.3 8E-12 2.7E-16 113.1 10.4 43 26-71 4-47 (184)
42 1q3t_A Cytidylate kinase; nucl 99.3 4.9E-12 1.7E-16 119.3 9.3 188 28-228 12-232 (236)
43 4eun_A Thermoresistant glucoki 99.3 1.7E-11 5.9E-16 112.4 11.9 163 27-229 24-192 (200)
44 2c95_A Adenylate kinase 1; tra 99.3 1.5E-12 5E-17 118.7 4.1 121 30-173 7-134 (196)
45 2iyv_A Shikimate kinase, SK; t 99.3 8.1E-13 2.8E-17 119.4 1.8 159 33-229 3-167 (184)
46 1knq_A Gluconate kinase; ALFA/ 99.3 3.9E-11 1.3E-15 107.4 12.6 161 28-228 4-171 (175)
47 1zuh_A Shikimate kinase; alpha 99.3 2.2E-12 7.4E-17 114.9 3.9 37 32-71 7-43 (168)
48 2h92_A Cytidylate kinase; ross 99.2 1.7E-12 5.8E-17 120.7 2.9 183 32-228 3-215 (219)
49 2cdn_A Adenylate kinase; phosp 99.2 3.8E-12 1.3E-16 116.8 4.8 169 28-228 16-199 (201)
50 3kb2_A SPBC2 prophage-derived 99.2 3.6E-11 1.2E-15 106.9 9.9 159 33-232 2-168 (173)
51 1via_A Shikimate kinase; struc 99.2 3.9E-12 1.3E-16 114.1 3.0 156 33-228 5-164 (175)
52 3umf_A Adenylate kinase; rossm 99.2 9.4E-12 3.2E-16 115.4 5.3 181 24-229 21-212 (217)
53 2pbr_A DTMP kinase, thymidylat 99.2 1.4E-11 4.9E-16 111.8 6.5 35 34-68 2-36 (195)
54 2rhm_A Putative kinase; P-loop 99.2 1.9E-12 6.6E-17 117.5 0.5 171 30-232 3-186 (193)
55 2pt5_A Shikimate kinase, SK; a 99.2 1.8E-12 6E-17 115.2 0.2 34 34-70 2-35 (168)
56 3iij_A Coilin-interacting nucl 99.2 1.5E-11 5E-16 110.7 5.8 42 26-70 5-46 (180)
57 3dl0_A Adenylate kinase; phosp 99.2 1.1E-11 3.6E-16 115.1 4.9 35 34-71 2-36 (216)
58 3d3q_A TRNA delta(2)-isopenten 99.2 6.2E-12 2.1E-16 123.8 2.9 146 33-202 8-163 (340)
59 3cm0_A Adenylate kinase; ATP-b 99.2 1.5E-11 5.1E-16 111.1 5.1 39 30-71 2-40 (186)
60 3fb4_A Adenylate kinase; psych 99.2 7.3E-12 2.5E-16 116.1 2.7 35 34-71 2-36 (216)
61 3tlx_A Adenylate kinase 2; str 99.2 2E-11 6.7E-16 115.7 5.3 123 29-173 26-157 (243)
62 3a4m_A L-seryl-tRNA(SEC) kinas 99.1 3.8E-10 1.3E-14 107.9 13.2 196 30-288 2-208 (260)
63 1e6c_A Shikimate kinase; phosp 99.1 5E-11 1.7E-15 106.2 6.6 35 33-70 3-37 (173)
64 1kag_A SKI, shikimate kinase I 99.1 1.2E-11 4.1E-16 110.3 2.2 155 32-228 4-170 (173)
65 3o7m_A Hypoxanthine phosphorib 99.1 3.5E-10 1.2E-14 102.2 11.6 119 266-409 14-137 (186)
66 4eaq_A DTMP kinase, thymidylat 99.1 4.6E-10 1.6E-14 105.2 12.8 182 29-232 23-226 (229)
67 3hvu_A Hypoxanthine phosphorib 99.1 4.9E-10 1.7E-14 102.5 12.2 118 266-408 36-158 (204)
68 2z0h_A DTMP kinase, thymidylat 99.1 1.5E-10 5.2E-15 105.2 8.6 35 34-68 2-36 (197)
69 1qhx_A CPT, protein (chloramph 99.1 1.8E-10 6.3E-15 103.1 8.6 38 32-70 3-40 (178)
70 1nks_A Adenylate kinase; therm 99.1 8E-11 2.7E-15 106.6 6.3 38 33-70 2-41 (194)
71 2qor_A Guanylate kinase; phosp 99.1 5.7E-11 2E-15 109.2 5.0 183 29-232 9-198 (204)
72 2ywu_A Hypoxanthine-guanine ph 99.1 4.5E-10 1.5E-14 101.1 10.7 119 265-408 14-137 (181)
73 3ohp_A Hypoxanthine phosphorib 99.1 4.2E-10 1.4E-14 100.9 10.3 118 266-408 10-133 (177)
74 2geb_A Hypoxanthine-guanine ph 99.1 1.4E-10 4.7E-15 105.1 7.0 119 266-409 18-141 (185)
75 2jaq_A Deoxyguanosine kinase; 99.1 1.8E-10 6.1E-15 105.3 7.4 75 150-229 123-199 (205)
76 1kht_A Adenylate kinase; phosp 99.1 9.1E-11 3.1E-15 106.1 5.3 40 32-71 3-44 (192)
77 3fdi_A Uncharacterized protein 99.1 1.1E-10 3.7E-15 107.3 5.6 34 33-70 7-40 (201)
78 1zak_A Adenylate kinase; ATP:A 99.0 5E-11 1.7E-15 111.0 3.1 38 31-71 4-41 (222)
79 1aky_A Adenylate kinase; ATP:A 99.0 1.5E-10 5.1E-15 107.6 5.8 38 31-71 3-40 (220)
80 3ozf_A Hypoxanthine-guanine-xa 99.0 6.3E-10 2.2E-14 104.5 10.0 118 266-408 65-198 (250)
81 1zd8_A GTP:AMP phosphotransfer 99.0 1.1E-10 3.8E-15 109.2 4.8 39 30-71 5-43 (227)
82 2wwf_A Thymidilate kinase, put 99.0 1E-10 3.5E-15 107.8 4.5 29 29-57 7-35 (212)
83 3tr0_A Guanylate kinase, GMP k 99.0 9E-10 3.1E-14 100.8 10.6 178 28-229 3-185 (205)
84 3be4_A Adenylate kinase; malar 99.0 2.5E-10 8.7E-15 106.0 6.4 38 31-71 4-41 (217)
85 2plr_A DTMP kinase, probable t 99.0 1.5E-09 5.1E-14 99.7 11.3 75 152-230 122-207 (213)
86 1nn5_A Similar to deoxythymidy 99.0 1.5E-10 5.1E-15 106.8 4.3 35 27-61 4-38 (215)
87 3hdt_A Putative kinase; struct 99.0 2E-10 6.9E-15 107.0 4.9 39 28-69 10-48 (223)
88 3sr0_A Adenylate kinase; phosp 99.0 2.7E-10 9.3E-15 104.9 5.7 116 33-173 1-125 (206)
89 1ak2_A Adenylate kinase isoenz 99.0 2.5E-10 8.6E-15 107.2 4.9 41 28-71 12-52 (233)
90 2vp4_A Deoxynucleoside kinase; 99.0 1.9E-11 6.5E-16 114.8 -3.5 75 150-229 145-223 (230)
91 2xb4_A Adenylate kinase; ATP-b 99.0 6.6E-10 2.3E-14 103.7 6.7 35 34-71 2-36 (223)
92 1z7g_A HGPRT, HGPRTASE, hypoxa 99.0 1.2E-09 4.2E-14 101.3 8.2 128 265-419 36-177 (217)
93 1e4v_A Adenylate kinase; trans 98.9 3.8E-10 1.3E-14 104.5 3.9 35 34-71 2-36 (214)
94 2j41_A Guanylate kinase; GMP, 98.9 5.5E-10 1.9E-14 102.3 4.7 179 28-229 2-185 (207)
95 3gmt_A Adenylate kinase; ssgci 98.9 5.8E-10 2E-14 103.8 4.4 117 32-173 8-132 (230)
96 1tc1_A Protein (hypoxanthine p 98.9 4.3E-09 1.5E-13 97.7 10.3 124 266-408 13-145 (220)
97 1yfz_A Hypoxanthine-guanine ph 98.9 4.8E-09 1.6E-13 96.5 10.5 96 312-409 61-161 (205)
98 1hgx_A HGXPRTASE, hypoxanthine 98.9 3.6E-09 1.2E-13 95.5 9.4 120 266-410 16-139 (183)
99 1vdm_A Purine phosphoribosyltr 98.9 6E-09 2E-13 91.2 10.4 93 314-408 29-125 (153)
100 1wd5_A Hypothetical protein TT 98.9 8.2E-09 2.8E-13 95.2 11.5 110 313-428 25-179 (208)
101 2jbh_A Phosphoribosyltransfera 98.9 2.3E-09 7.9E-14 100.0 7.5 118 266-408 45-176 (225)
102 2vli_A Antibiotic resistance p 98.9 5.7E-10 1.9E-14 100.2 3.0 31 31-64 4-34 (183)
103 1dku_A Protein (phosphoribosyl 98.9 1.5E-09 5.2E-14 106.2 5.9 133 311-449 167-308 (317)
104 3tau_A Guanylate kinase, GMP k 98.9 4.1E-10 1.4E-14 103.9 1.6 181 27-230 3-188 (208)
105 2yvu_A Probable adenylyl-sulfa 98.8 7.3E-09 2.5E-13 93.4 8.9 40 30-69 11-52 (186)
106 1fsg_A HGPRTASE, hypoxanthine- 98.8 5.2E-09 1.8E-13 98.1 7.9 118 266-408 51-184 (233)
107 1ly1_A Polynucleotide kinase; 98.8 6E-09 2E-13 93.1 8.0 36 32-70 2-38 (181)
108 1pzm_A HGPRT, hypoxanthine-gua 98.8 6.3E-09 2.2E-13 96.1 8.3 125 265-408 28-160 (211)
109 3uie_A Adenylyl-sulfate kinase 98.8 6.3E-09 2.2E-13 95.1 7.1 46 26-71 19-66 (200)
110 4edh_A DTMP kinase, thymidylat 98.8 8E-09 2.8E-13 95.5 7.0 188 31-232 5-208 (213)
111 4tmk_A Protein (thymidylate ki 98.8 6.8E-09 2.3E-13 96.0 5.8 78 151-233 132-209 (213)
112 2aee_A OPRT, oprtase, orotate 98.8 4.5E-09 1.5E-13 97.1 4.6 117 314-438 71-193 (211)
113 2v54_A DTMP kinase, thymidylat 98.7 2.6E-08 9E-13 90.8 9.7 35 31-67 3-37 (204)
114 3lv8_A DTMP kinase, thymidylat 98.7 6.7E-09 2.3E-13 97.5 5.4 79 151-234 154-232 (236)
115 3a00_A Guanylate kinase, GMP k 98.7 5E-09 1.7E-13 94.7 3.9 25 33-57 2-26 (186)
116 1u9y_A RPPK;, ribose-phosphate 98.7 2.7E-08 9.2E-13 95.9 9.2 99 312-416 156-257 (284)
117 3v9p_A DTMP kinase, thymidylat 98.7 3E-09 1E-13 99.2 2.4 74 151-228 151-224 (227)
118 1w30_A PYRR bifunctional prote 98.7 2.8E-08 9.4E-13 91.0 8.1 124 266-406 18-153 (201)
119 1a3c_A PYRR, pyrimidine operon 98.7 2.5E-08 8.5E-13 89.8 7.6 93 312-406 33-139 (181)
120 2pez_A Bifunctional 3'-phospho 98.7 3.2E-08 1.1E-12 88.6 8.1 34 31-64 4-37 (179)
121 1ex7_A Guanylate kinase; subst 98.7 7.6E-09 2.6E-13 93.5 3.9 171 34-229 3-183 (186)
122 1ltq_A Polynucleotide kinase; 98.7 7.8E-08 2.7E-12 93.5 10.7 37 32-70 2-38 (301)
123 3s5j_B Ribose-phosphate pyroph 98.7 4.2E-08 1.4E-12 95.7 8.6 135 311-450 163-306 (326)
124 3acd_A Hypoxanthine-guanine ph 98.7 1E-07 3.6E-12 85.4 10.5 117 266-407 15-136 (181)
125 1ufr_A TT1027, PYR mRNA-bindin 98.7 5.7E-08 1.9E-12 87.5 8.9 93 312-406 33-137 (181)
126 3lnc_A Guanylate kinase, GMP k 98.7 9.8E-09 3.4E-13 96.0 3.8 32 26-57 21-53 (231)
127 4hlc_A DTMP kinase, thymidylat 98.7 6.3E-08 2.2E-12 88.9 9.0 79 152-233 125-203 (205)
128 3fvq_A Fe(3+) IONS import ATP- 98.6 3.2E-08 1.1E-12 98.3 7.3 52 1-57 1-55 (359)
129 3hjn_A DTMP kinase, thymidylat 98.6 4.3E-09 1.5E-13 96.2 0.8 73 152-233 122-194 (197)
130 1m7g_A Adenylylsulfate kinase; 98.6 3E-08 1E-12 91.4 6.5 42 29-70 22-66 (211)
131 2ze6_A Isopentenyl transferase 98.6 6.6E-08 2.3E-12 91.8 8.5 35 33-70 2-36 (253)
132 3dah_A Ribose-phosphate pyroph 98.6 6.8E-08 2.3E-12 94.1 8.6 113 311-428 166-280 (319)
133 1zp6_A Hypothetical protein AT 98.6 1.9E-07 6.3E-12 84.3 10.1 43 27-70 4-46 (191)
134 3ld9_A DTMP kinase, thymidylat 98.6 1E-08 3.6E-13 95.2 1.7 73 151-232 145-217 (223)
135 2pcj_A ABC transporter, lipopr 98.5 4.3E-08 1.5E-12 91.4 4.1 52 1-57 1-55 (224)
136 3ch4_B Pmkase, phosphomevalona 98.5 9.1E-08 3.1E-12 86.9 6.1 164 28-218 7-177 (202)
137 3zvl_A Bifunctional polynucleo 98.5 9.2E-08 3.1E-12 97.6 6.8 41 26-69 252-292 (416)
138 1kgd_A CASK, peripheral plasma 98.5 3.6E-08 1.2E-12 88.5 3.1 27 31-57 4-30 (180)
139 2gks_A Bifunctional SAT/APS ki 98.5 5.8E-08 2E-12 102.2 5.0 40 30-69 370-411 (546)
140 3a8t_A Adenylate isopentenyltr 98.5 2.9E-07 1E-11 90.2 9.5 40 31-73 39-80 (339)
141 2olj_A Amino acid ABC transpor 98.5 1.1E-07 3.8E-12 90.7 6.2 52 1-57 21-75 (263)
142 2ocp_A DGK, deoxyguanosine kin 98.5 2.3E-09 7.8E-14 101.1 -5.9 27 31-57 1-27 (241)
143 3rlf_A Maltose/maltodextrin im 98.5 8.9E-08 3E-12 95.8 5.1 51 2-57 1-54 (381)
144 3gfo_A Cobalt import ATP-bindi 98.5 7E-08 2.4E-12 92.7 3.9 50 3-57 6-59 (275)
145 1ji0_A ABC transporter; ATP bi 98.4 2.9E-07 1E-11 86.6 7.5 50 3-57 5-57 (240)
146 3tui_C Methionine import ATP-b 98.4 1.6E-07 5.6E-12 93.3 5.9 52 1-57 21-79 (366)
147 1v43_A Sugar-binding transport 98.4 2.8E-07 9.7E-12 92.1 7.7 49 4-57 11-62 (372)
148 2ji4_A Phosphoribosyl pyrophos 98.4 5E-07 1.7E-11 90.3 9.4 113 311-426 191-334 (379)
149 2yyz_A Sugar ABC transporter, 98.4 2E-07 6.9E-12 92.7 6.5 51 1-57 1-54 (359)
150 3tmk_A Thymidylate kinase; pho 98.4 1.1E-07 3.8E-12 87.9 4.3 189 29-234 2-206 (216)
151 1vpl_A ABC transporter, ATP-bi 98.4 1.5E-07 5.1E-12 89.5 5.1 50 3-57 14-66 (256)
152 2nq2_C Hypothetical ABC transp 98.4 2.2E-07 7.4E-12 88.2 6.2 142 1-147 1-162 (253)
153 2bbw_A Adenylate kinase 4, AK4 98.4 1.1E-07 3.6E-12 89.8 3.9 38 30-70 25-62 (246)
154 2it1_A 362AA long hypothetical 98.4 2.5E-07 8.4E-12 92.2 6.6 51 1-57 1-54 (362)
155 2xbu_A Hypoxanthine-guanine ph 98.4 7.2E-07 2.4E-11 82.7 9.3 95 313-407 31-161 (221)
156 1m8p_A Sulfate adenylyltransfe 98.4 4.4E-07 1.5E-11 96.0 8.9 42 29-70 393-437 (573)
157 1p5z_B DCK, deoxycytidine kina 98.4 2.3E-07 7.9E-12 88.4 6.1 36 28-65 20-55 (263)
158 1gtv_A TMK, thymidylate kinase 98.4 2.9E-09 9.8E-14 98.1 -7.0 28 34-61 2-29 (214)
159 1x6v_B Bifunctional 3'-phospho 98.4 5.5E-07 1.9E-11 95.5 9.1 37 31-67 51-87 (630)
160 3lrt_A Ribose-phosphate pyroph 98.4 2.7E-06 9.3E-11 81.6 12.8 97 311-412 153-251 (286)
161 2bdt_A BH3686; alpha-beta prot 98.4 6.5E-07 2.2E-11 80.6 7.8 37 32-70 2-38 (189)
162 1y0b_A Xanthine phosphoribosyl 98.4 2.5E-06 8.5E-11 77.7 11.6 96 314-415 56-171 (197)
163 4g1u_C Hemin import ATP-bindin 98.4 1.8E-07 6.3E-12 89.4 4.0 58 3-65 10-71 (266)
164 3tif_A Uncharacterized ABC tra 98.3 3.8E-07 1.3E-11 85.5 5.9 49 4-57 1-56 (235)
165 1g6h_A High-affinity branched- 98.3 2.9E-07 1E-11 87.6 4.8 51 2-57 5-58 (257)
166 2p5t_B PEZT; postsegregational 98.3 7.9E-07 2.7E-11 84.3 7.6 44 28-72 28-71 (253)
167 1z6g_A Guanylate kinase; struc 98.3 4.4E-07 1.5E-11 84.1 5.7 40 13-57 9-48 (218)
168 1gvn_B Zeta; postsegregational 98.3 3.4E-07 1.2E-11 88.5 5.1 44 28-72 29-72 (287)
169 3ney_A 55 kDa erythrocyte memb 98.3 9E-07 3.1E-11 80.4 7.3 32 26-57 13-44 (197)
170 1oxx_K GLCV, glucose, ABC tran 98.3 5.6E-07 1.9E-11 89.4 6.4 51 1-57 1-56 (353)
171 2yz2_A Putative ABC transporte 98.3 7E-07 2.4E-11 85.4 6.8 49 4-57 2-58 (266)
172 2ixe_A Antigen peptide transpo 98.3 4E-07 1.4E-11 87.3 4.7 51 2-57 14-70 (271)
173 1zn8_A APRT, adenine phosphori 98.3 2.9E-06 1E-10 76.0 10.1 94 314-413 60-169 (180)
174 2dy0_A APRT, adenine phosphori 98.3 2.5E-06 8.5E-11 77.2 9.4 59 361-423 123-183 (190)
175 1sgw_A Putative ABC transporte 98.2 8.1E-07 2.8E-11 82.0 5.0 50 3-57 9-60 (214)
176 1g29_1 MALK, maltose transport 98.2 7.4E-07 2.5E-11 89.1 5.1 51 1-57 1-54 (372)
177 1z47_A CYSA, putative ABC-tran 98.2 7.6E-07 2.6E-11 88.4 5.0 50 3-57 13-66 (355)
178 3d31_A Sulfate/molybdate ABC t 98.2 6.9E-07 2.4E-11 88.5 4.4 48 4-57 1-51 (348)
179 2p1z_A Phosphoribosyltransfera 98.2 3.2E-06 1.1E-10 75.8 8.1 103 314-423 66-170 (180)
180 3nh6_A ATP-binding cassette SU 98.2 4.6E-07 1.6E-11 88.2 2.6 49 4-57 53-105 (306)
181 1l1q_A Adenine phosphoribosylt 98.2 7.6E-06 2.6E-10 73.7 10.5 97 314-417 56-171 (186)
182 2yzk_A OPRT, oprtase, orotate 98.2 5.3E-06 1.8E-10 74.2 9.4 101 313-424 60-163 (178)
183 3dez_A OPRT, oprtase, orotate 98.2 1.1E-05 3.7E-10 75.5 11.8 101 314-423 103-206 (243)
184 1qb7_A APRT, adenine phosphori 98.2 8.8E-06 3E-10 76.2 10.6 112 314-431 74-209 (236)
185 1g2q_A Adenine phosphoribosylt 98.1 8.5E-06 2.9E-10 73.5 9.9 95 313-412 61-170 (187)
186 3m3h_A OPRT, oprtase, orotate 98.1 9.8E-06 3.3E-10 75.5 10.5 101 314-424 91-195 (234)
187 3cr8_A Sulfate adenylyltranfer 98.1 1.6E-06 5.6E-11 91.0 5.6 41 29-69 366-409 (552)
188 1dqn_A Guanine phosphoribosylt 98.1 1.5E-06 5.1E-11 80.8 4.7 132 266-425 37-172 (230)
189 1s96_A Guanylate kinase, GMP k 98.1 5.1E-06 1.7E-10 76.9 8.3 175 28-229 12-196 (219)
190 3gd7_A Fusion complex of cysti 98.1 7.9E-07 2.7E-11 89.4 3.0 59 3-66 18-81 (390)
191 2ff7_A Alpha-hemolysin translo 98.1 1.2E-06 4.2E-11 82.7 3.7 49 4-57 7-60 (247)
192 1lvg_A Guanylate kinase, GMP k 98.1 7E-06 2.4E-10 74.7 8.5 27 31-57 3-29 (198)
193 2qi9_C Vitamin B12 import ATP- 98.1 6.8E-07 2.3E-11 84.5 1.4 51 1-57 1-51 (249)
194 2pze_A Cystic fibrosis transme 98.1 8.7E-07 3E-11 82.8 1.7 52 1-57 3-59 (229)
195 2pjz_A Hypothetical protein ST 98.1 1.5E-06 5.1E-11 82.8 3.2 47 4-56 1-54 (263)
196 1dek_A Deoxynucleoside monopho 98.0 2E-06 6.8E-11 80.7 3.7 33 33-68 2-34 (241)
197 2d2e_A SUFC protein; ABC-ATPas 98.0 1.2E-06 4E-11 83.0 1.9 49 1-55 1-52 (250)
198 2wns_A Orotate phosphoribosylt 98.0 1.2E-05 4.2E-10 73.5 8.5 101 314-424 65-168 (205)
199 1b0u_A Histidine permease; ABC 98.0 1.5E-06 5.3E-11 82.8 1.8 50 3-57 5-57 (262)
200 3b5x_A Lipid A export ATP-bind 98.0 4.3E-06 1.5E-10 88.9 5.5 50 3-57 340-394 (582)
201 2cbz_A Multidrug resistance-as 98.0 1.8E-06 6.1E-11 81.0 2.1 51 1-57 1-56 (237)
202 2ps1_A Orotate phosphoribosylt 98.0 1.7E-05 5.9E-10 73.7 8.5 88 315-407 71-166 (226)
203 1vch_A Phosphoribosyltransfera 98.0 7.8E-06 2.7E-10 72.8 6.0 88 314-408 55-162 (175)
204 2zu0_C Probable ATP-dependent 98.0 2.4E-06 8.1E-11 81.7 2.4 48 3-55 19-69 (267)
205 1nul_A XPRT, xanthine-guanine 97.9 1E-05 3.5E-10 70.4 5.8 86 314-408 31-118 (152)
206 2ihy_A ABC transporter, ATP-bi 97.9 2.3E-06 7.8E-11 82.3 1.4 50 3-57 20-72 (279)
207 3b60_A Lipid A export ATP-bind 97.9 4.1E-06 1.4E-10 89.1 3.3 50 3-57 340-394 (582)
208 3mjd_A Orotate phosphoribosylt 97.9 1.4E-05 4.7E-10 74.3 6.1 85 314-407 84-177 (232)
209 1mv5_A LMRA, multidrug resista 97.9 4.5E-06 1.5E-10 78.6 2.6 49 4-57 1-53 (243)
210 1p6x_A Thymidine kinase; P-loo 97.8 1.2E-05 4E-10 79.0 5.0 28 31-58 6-33 (334)
211 3crm_A TRNA delta(2)-isopenten 97.8 1.6E-05 5.5E-10 77.6 5.9 36 32-70 5-40 (323)
212 3foz_A TRNA delta(2)-isopenten 97.8 2.2E-05 7.5E-10 75.9 6.7 42 30-74 8-51 (316)
213 3qf4_B Uncharacterized ABC tra 97.8 5.6E-06 1.9E-10 88.3 2.5 49 4-57 354-406 (598)
214 3exa_A TRNA delta(2)-isopenten 97.8 1.6E-05 5.5E-10 76.9 5.5 41 32-75 3-45 (322)
215 3n2l_A OPRT, oprtase, orotate 97.8 6.8E-05 2.3E-09 69.8 9.5 102 314-424 91-206 (238)
216 2ghi_A Transport protein; mult 97.8 5.3E-06 1.8E-10 78.9 1.8 50 3-57 16-71 (260)
217 4a82_A Cystic fibrosis transme 97.8 6.8E-06 2.3E-10 87.3 2.7 49 4-57 339-392 (578)
218 2onk_A Molybdate/tungstate ABC 97.7 7.6E-06 2.6E-10 76.9 1.9 47 4-57 1-49 (240)
219 3qf4_A ABC transporter, ATP-bi 97.7 9.5E-06 3.2E-10 86.3 2.7 50 3-57 340-394 (587)
220 2axn_A 6-phosphofructo-2-kinas 97.7 7.8E-06 2.7E-10 85.5 1.6 43 28-70 31-75 (520)
221 2yl4_A ATP-binding cassette SU 97.7 1.6E-05 5.4E-10 84.8 4.0 48 5-57 342-395 (595)
222 4f4c_A Multidrug resistance pr 97.7 1.4E-05 4.8E-10 92.6 3.6 132 4-146 415-587 (1321)
223 4f4c_A Multidrug resistance pr 97.7 1.3E-05 4.5E-10 92.8 3.3 49 4-57 1076-1130(1321)
224 2bbs_A Cystic fibrosis transme 97.7 9.1E-06 3.1E-10 78.5 1.4 50 3-57 39-89 (290)
225 3eph_A TRNA isopentenyltransfe 97.7 4.1E-05 1.4E-09 76.7 6.0 41 32-75 2-44 (409)
226 1lh0_A OMP synthase; loop clos 97.6 6.9E-05 2.4E-09 68.9 6.7 85 314-408 66-159 (213)
227 2v9p_A Replication protein E1; 97.6 9.1E-06 3.1E-10 78.9 0.5 49 4-57 101-151 (305)
228 1o57_A PUR operon repressor; p 97.6 9.5E-05 3.2E-09 71.2 7.3 46 361-408 193-238 (291)
229 1htw_A HI0065; nucleotide-bind 97.6 1.2E-05 4.2E-10 70.3 0.9 40 13-57 19-58 (158)
230 1bif_A 6-phosphofructo-2-kinas 97.5 0.00015 5.1E-09 74.9 8.4 29 29-57 36-64 (469)
231 2eyu_A Twitching motility prot 97.4 7E-05 2.4E-09 71.2 4.0 57 4-68 5-63 (261)
232 1ecf_A Glutamine phosphoribosy 97.4 0.00018 6.3E-09 74.8 7.1 86 313-402 296-395 (504)
233 2yhs_A FTSY, cell division pro 97.3 0.00067 2.3E-08 69.7 10.1 32 26-57 287-318 (503)
234 3ozx_A RNAse L inhibitor; ATP 97.3 0.00013 4.3E-09 76.6 4.8 49 4-57 269-319 (538)
235 3czq_A Putative polyphosphate 97.3 4E-05 1.4E-09 73.7 0.8 36 31-66 85-120 (304)
236 2ehv_A Hypothetical protein PH 97.3 0.0002 6.7E-09 66.8 5.6 61 4-68 6-69 (251)
237 3g5u_A MCG1178, multidrug resi 97.3 7.8E-05 2.7E-09 86.2 2.9 49 4-57 387-441 (1284)
238 1g8f_A Sulfate adenylyltransfe 97.3 0.00019 6.4E-09 74.5 5.0 39 30-68 393-435 (511)
239 2qm8_A GTPase/ATPase; G protei 97.3 0.00011 3.7E-09 72.5 3.1 59 4-67 29-92 (337)
240 4gp7_A Metallophosphoesterase; 97.3 8.4E-05 2.9E-09 65.7 2.0 28 26-53 3-30 (171)
241 3g5u_A MCG1178, multidrug resi 97.3 0.00014 4.8E-09 84.0 4.3 49 4-57 1030-1084(1284)
242 1ao0_A Glutamine phosphoribosy 97.2 0.00018 6.1E-09 74.0 4.1 42 359-402 333-374 (459)
243 1pui_A ENGB, probable GTP-bind 97.2 0.00014 4.7E-09 66.0 2.6 46 1-54 1-48 (210)
244 1znw_A Guanylate kinase, GMP k 97.2 0.00021 7.3E-09 65.1 3.6 30 28-57 16-45 (207)
245 1tf7_A KAIC; homohexamer, hexa 97.1 0.00028 9.7E-09 73.9 4.1 62 2-68 10-78 (525)
246 4a74_A DNA repair and recombin 97.1 0.00024 8.3E-09 65.3 3.0 48 5-56 2-49 (231)
247 3qw4_B UMP synthase; N-termina 97.0 0.001 3.5E-08 67.9 7.8 100 314-423 319-421 (453)
248 1xjc_A MOBB protein homolog; s 97.0 0.00055 1.9E-08 60.3 5.0 37 31-67 3-41 (169)
249 1ye8_A Protein THEP1, hypothet 97.0 0.00031 1.1E-08 62.5 3.4 24 34-57 2-25 (178)
250 2x8a_A Nuclear valosin-contain 97.0 0.00071 2.4E-08 64.6 5.9 48 15-70 34-81 (274)
251 3b9q_A Chloroplast SRP recepto 97.0 0.00092 3.2E-08 64.7 6.7 32 26-57 94-125 (302)
252 2kjq_A DNAA-related protein; s 97.0 0.00059 2E-08 58.9 4.3 40 31-70 35-76 (149)
253 1xwi_A SKD1 protein; VPS4B, AA 96.9 0.011 3.8E-07 57.6 13.9 39 32-70 45-83 (322)
254 1ixz_A ATP-dependent metallopr 96.9 0.00043 1.5E-08 65.0 3.4 44 15-66 39-82 (254)
255 2px0_A Flagellar biosynthesis 96.9 0.004 1.4E-07 60.1 10.2 40 30-69 103-145 (296)
256 3ec2_A DNA replication protein 96.9 0.00043 1.5E-08 61.3 3.0 30 28-57 34-63 (180)
257 1zu4_A FTSY; GTPase, signal re 96.9 0.0014 4.6E-08 64.1 6.8 44 26-69 99-144 (320)
258 1yqt_A RNAse L inhibitor; ATP- 96.8 0.0004 1.4E-08 72.9 2.8 50 3-57 286-337 (538)
259 2qmh_A HPR kinase/phosphorylas 96.8 0.0008 2.7E-08 60.7 4.3 35 31-69 33-67 (205)
260 3bk7_A ABC transporter ATP-bin 96.8 0.00041 1.4E-08 73.8 2.8 50 3-57 356-407 (607)
261 1vma_A Cell division protein F 96.8 0.0014 4.7E-08 63.6 6.3 42 28-69 100-143 (306)
262 3bk7_A ABC transporter ATP-bin 96.8 0.0006 2.1E-08 72.5 4.0 48 4-57 83-142 (607)
263 1iy2_A ATP-dependent metallopr 96.8 0.00058 2E-08 65.1 3.4 38 26-66 69-106 (278)
264 2og2_A Putative signal recogni 96.8 0.0016 5.6E-08 64.5 6.6 32 26-57 151-182 (359)
265 1cr0_A DNA primase/helicase; R 96.8 0.00058 2E-08 65.7 3.2 53 9-66 16-72 (296)
266 2qag_C Septin-7; cell cycle, c 96.8 0.00087 3E-08 67.9 4.4 44 1-55 8-54 (418)
267 1np6_A Molybdopterin-guanine d 96.7 0.00091 3.1E-08 59.3 3.7 26 32-57 6-31 (174)
268 1nij_A Hypothetical protein YJ 96.7 0.00096 3.3E-08 65.1 4.3 37 30-66 2-38 (318)
269 2f1r_A Molybdopterin-guanine d 96.7 0.00049 1.7E-08 60.8 1.7 26 33-58 3-28 (171)
270 2npi_A Protein CLP1; CLP1-PCF1 96.7 0.00017 5.7E-09 74.1 -1.6 46 3-56 117-162 (460)
271 2iw3_A Elongation factor 3A; a 96.7 0.00031 1.1E-08 78.0 0.4 50 3-57 670-724 (986)
272 3e70_C DPA, signal recognition 96.6 0.0021 7.1E-08 63.0 6.1 41 29-69 126-168 (328)
273 1kjw_A Postsynaptic density pr 96.6 0.002 7E-08 62.0 5.9 168 31-231 104-282 (295)
274 1yqt_A RNAse L inhibitor; ATP- 96.6 0.001 3.6E-08 69.7 4.1 44 8-57 25-72 (538)
275 1svm_A Large T antigen; AAA+ f 96.6 0.00067 2.3E-08 67.7 2.3 37 16-57 158-194 (377)
276 1rj9_A FTSY, signal recognitio 96.6 0.0012 4E-08 64.1 3.9 28 31-58 101-128 (304)
277 1lw7_A Transcriptional regulat 96.5 0.0017 5.8E-08 64.6 4.5 32 26-57 162-195 (365)
278 2p67_A LAO/AO transport system 96.5 0.0012 4.2E-08 65.0 3.2 60 4-68 30-94 (341)
279 2cvh_A DNA repair and recombin 96.5 0.0021 7.1E-08 58.5 4.5 39 29-68 17-55 (220)
280 3euj_A Chromosome partition pr 96.5 0.0012 4E-08 68.0 3.0 39 13-57 16-54 (483)
281 1p9r_A General secretion pathw 96.4 0.0012 4.2E-08 66.8 3.0 29 30-58 165-193 (418)
282 2i3b_A HCR-ntpase, human cance 96.4 0.0014 4.9E-08 58.8 3.0 24 34-57 3-26 (189)
283 3t15_A Ribulose bisphosphate c 96.4 0.0015 5E-08 63.0 3.2 39 29-68 33-71 (293)
284 2qag_B Septin-6, protein NEDD5 96.4 0.0009 3.1E-08 67.7 1.7 34 17-55 30-65 (427)
285 3tvt_A Disks large 1 tumor sup 96.4 0.002 6.7E-08 62.0 3.8 168 31-230 99-276 (292)
286 3dm5_A SRP54, signal recogniti 96.4 0.0051 1.7E-07 62.5 7.0 40 31-70 99-140 (443)
287 3kl4_A SRP54, signal recogniti 96.3 0.0045 1.5E-07 62.8 6.5 40 30-69 95-136 (433)
288 2iw3_A Elongation factor 3A; a 96.3 0.001 3.5E-08 73.9 1.8 131 5-147 436-582 (986)
289 3b85_A Phosphate starvation-in 96.3 0.0016 5.4E-08 59.5 2.7 25 31-55 21-45 (208)
290 2zan_A Vacuolar protein sortin 96.3 0.015 5.1E-07 59.4 10.2 39 32-70 167-205 (444)
291 2dpy_A FLII, flagellum-specifi 96.3 0.0017 5.6E-08 66.3 3.0 48 4-57 131-182 (438)
292 2gza_A Type IV secretion syste 96.3 0.00041 1.4E-08 69.0 -1.6 40 26-65 169-209 (361)
293 1lv7_A FTSH; alpha/beta domain 96.3 0.0027 9.1E-08 59.6 4.1 37 33-70 46-82 (257)
294 2qz4_A Paraplegin; AAA+, SPG7, 96.3 0.005 1.7E-07 57.6 5.9 40 30-70 37-76 (262)
295 2w0m_A SSO2452; RECA, SSPF, un 96.3 0.0018 6.3E-08 59.2 2.9 39 29-67 20-60 (235)
296 2dhr_A FTSH; AAA+ protein, hex 96.2 0.0027 9.3E-08 65.7 4.3 42 26-70 60-101 (499)
297 3tqf_A HPR(Ser) kinase; transf 96.2 0.003 1E-07 55.5 3.9 36 31-70 15-50 (181)
298 2obl_A ESCN; ATPase, hydrolase 96.2 0.0015 5.2E-08 64.5 2.3 48 4-57 45-96 (347)
299 3cf0_A Transitional endoplasmi 96.2 0.0032 1.1E-07 60.8 4.5 28 30-57 47-74 (301)
300 3sop_A Neuronal-specific septi 96.2 0.003 1E-07 60.1 3.8 25 33-57 3-27 (270)
301 3jvv_A Twitching mobility prot 96.1 0.0034 1.1E-07 62.2 4.0 28 30-57 121-148 (356)
302 1e2k_A Thymidine kinase; trans 96.1 0.0025 8.7E-08 62.2 3.1 30 31-60 3-32 (331)
303 1c9k_A COBU, adenosylcobinamid 96.1 0.0036 1.2E-07 55.6 3.8 33 34-68 1-33 (180)
304 1of1_A Thymidine kinase; trans 96.1 0.003 1E-07 62.7 3.5 32 30-61 47-78 (376)
305 2ewv_A Twitching motility prot 96.1 0.0038 1.3E-07 62.2 4.4 29 29-57 133-161 (372)
306 3kta_A Chromosome segregation 96.1 0.0043 1.5E-07 54.7 4.2 24 34-57 28-51 (182)
307 3j16_B RLI1P; ribosome recycli 96.1 0.0039 1.3E-07 66.1 4.5 30 28-57 99-128 (608)
308 1jbk_A CLPB protein; beta barr 96.0 0.0039 1.3E-07 54.7 3.8 26 32-57 43-68 (195)
309 1in4_A RUVB, holliday junction 96.0 0.0031 1.1E-07 61.8 3.4 35 33-68 52-86 (334)
310 1ls1_A Signal recognition part 96.0 0.0085 2.9E-07 57.7 6.3 38 31-68 97-136 (295)
311 3bos_A Putative DNA replicatio 96.0 0.0036 1.2E-07 57.4 3.5 39 31-69 51-91 (242)
312 2p65_A Hypothetical protein PF 96.0 0.0042 1.4E-07 54.4 3.7 26 32-57 43-68 (187)
313 3hr8_A Protein RECA; alpha and 96.0 0.024 8.1E-07 56.0 9.5 41 30-70 59-101 (356)
314 1n0w_A DNA repair protein RAD5 96.0 0.0046 1.6E-07 57.1 4.1 39 30-68 22-68 (243)
315 2pt7_A CAG-ALFA; ATPase, prote 95.9 0.00047 1.6E-08 67.7 -3.0 40 26-65 165-205 (330)
316 3b9p_A CG5977-PA, isoform A; A 95.9 0.0043 1.5E-07 59.4 3.8 38 32-70 54-91 (297)
317 3p32_A Probable GTPase RV1496/ 95.9 0.0086 2.9E-07 59.2 6.1 38 30-67 77-116 (355)
318 3h4m_A Proteasome-activating n 95.8 0.0062 2.1E-07 57.9 4.5 39 31-70 50-88 (285)
319 3syl_A Protein CBBX; photosynt 95.8 0.0077 2.6E-07 57.9 5.2 40 31-70 66-111 (309)
320 2xxa_A Signal recognition part 95.8 0.011 3.8E-07 60.0 6.5 42 29-70 97-141 (433)
321 1d2n_A N-ethylmaleimide-sensit 95.8 0.0083 2.8E-07 56.7 5.3 28 30-57 62-89 (272)
322 2w58_A DNAI, primosome compone 95.8 0.0049 1.7E-07 55.4 3.5 25 33-57 55-79 (202)
323 2www_A Methylmalonic aciduria 95.8 0.011 3.9E-07 58.2 6.4 38 30-67 72-111 (349)
324 4b4t_K 26S protease regulatory 95.8 0.0061 2.1E-07 61.7 4.3 41 30-71 204-244 (428)
325 2j37_W Signal recognition part 95.8 0.009 3.1E-07 61.8 5.6 41 30-70 99-141 (504)
326 4b4t_M 26S protease regulatory 95.8 0.0063 2.2E-07 61.7 4.3 40 30-70 213-252 (434)
327 1j8m_F SRP54, signal recogniti 95.8 0.011 3.7E-07 57.0 5.8 43 26-69 93-137 (297)
328 2ffh_A Protein (FFH); SRP54, s 95.7 0.013 4.4E-07 59.3 6.5 38 31-68 97-136 (425)
329 4aby_A DNA repair protein RECN 95.7 0.0025 8.5E-08 64.3 1.1 36 16-57 50-85 (415)
330 4b4t_L 26S protease subunit RP 95.7 0.0072 2.5E-07 61.3 4.3 41 30-71 213-253 (437)
331 1pzn_A RAD51, DNA repair and r 95.6 0.0042 1.4E-07 61.4 2.5 30 27-56 126-155 (349)
332 3ozx_A RNAse L inhibitor; ATP 95.6 0.0071 2.4E-07 63.3 4.2 38 14-57 13-50 (538)
333 2vf7_A UVRA2, excinuclease ABC 95.6 0.0015 5.3E-08 71.6 -0.9 46 3-55 501-547 (842)
334 2dr3_A UPF0273 protein PH0284; 95.6 0.012 4.1E-07 54.3 5.4 39 30-68 21-61 (247)
335 3n70_A Transport activator; si 95.6 0.0051 1.8E-07 52.4 2.6 35 34-69 26-62 (145)
336 4b4t_J 26S protease regulatory 95.6 0.0067 2.3E-07 60.7 3.7 40 31-71 181-220 (405)
337 3hws_A ATP-dependent CLP prote 95.6 0.0058 2E-07 60.5 3.3 34 32-66 51-84 (363)
338 4fcw_A Chaperone protein CLPB; 95.6 0.013 4.6E-07 56.2 5.7 39 32-70 47-87 (311)
339 2wsm_A Hydrogenase expression/ 95.5 0.016 5.4E-07 52.6 5.9 37 31-67 29-66 (221)
340 1yrb_A ATP(GTP)binding protein 95.5 0.024 8E-07 53.0 7.2 41 28-68 10-51 (262)
341 2f9l_A RAB11B, member RAS onco 95.5 0.0076 2.6E-07 53.9 3.5 25 31-55 4-28 (199)
342 1osn_A Thymidine kinase, VZV-T 95.5 0.0048 1.6E-07 60.5 2.2 33 28-60 8-41 (341)
343 1oix_A RAS-related protein RAB 95.5 0.0079 2.7E-07 53.5 3.5 24 32-55 29-52 (191)
344 1g41_A Heat shock protein HSLU 95.5 0.0066 2.3E-07 61.7 3.3 37 32-69 50-86 (444)
345 3ux8_A Excinuclease ABC, A sub 95.5 0.0024 8.1E-08 68.9 -0.0 34 14-52 335-368 (670)
346 2v3c_C SRP54, signal recogniti 95.5 0.0074 2.5E-07 61.3 3.6 41 30-70 97-139 (432)
347 2xkx_A Disks large homolog 4; 95.5 0.031 1E-06 60.7 8.6 168 30-230 529-707 (721)
348 3eie_A Vacuolar protein sortin 95.4 0.0091 3.1E-07 58.1 4.1 26 32-57 51-76 (322)
349 1ofh_A ATP-dependent HSL prote 95.4 0.01 3.6E-07 56.7 4.3 38 32-70 50-87 (310)
350 4b4t_H 26S protease regulatory 95.4 0.0087 3E-07 60.9 3.8 40 30-70 241-280 (467)
351 2o8b_B DNA mismatch repair pro 95.4 0.0077 2.6E-07 67.7 3.7 45 3-52 749-809 (1022)
352 2ygr_A Uvrabc system protein A 95.4 0.0031 1.1E-07 69.9 0.5 42 4-52 647-688 (993)
353 2oap_1 GSPE-2, type II secreti 95.4 0.0016 5.6E-08 67.7 -1.7 37 28-64 256-293 (511)
354 1tue_A Replication protein E1; 95.3 0.0083 2.9E-07 54.3 3.0 25 33-57 59-83 (212)
355 1njg_A DNA polymerase III subu 95.3 0.01 3.6E-07 53.9 3.7 25 33-57 46-70 (250)
356 1l8q_A Chromosomal replication 95.3 0.0069 2.3E-07 58.9 2.6 37 32-68 37-75 (324)
357 1f2t_A RAD50 ABC-ATPase; DNA d 95.3 0.017 6E-07 49.4 4.9 25 32-56 23-47 (149)
358 1nlf_A Regulatory protein REPA 95.3 0.0085 2.9E-07 57.0 3.2 28 29-56 27-54 (279)
359 2r6f_A Excinuclease ABC subuni 95.3 0.0029 9.9E-08 69.9 -0.2 42 4-52 629-670 (972)
360 3ice_A Transcription terminati 95.3 0.0098 3.3E-07 59.1 3.6 31 26-56 168-198 (422)
361 2vf7_A UVRA2, excinuclease ABC 95.2 0.0052 1.8E-07 67.4 1.7 32 14-50 23-54 (842)
362 2qp9_X Vacuolar protein sortin 95.2 0.011 3.6E-07 58.6 3.8 25 33-57 85-109 (355)
363 1um8_A ATP-dependent CLP prote 95.2 0.0089 3E-07 59.5 3.3 35 33-68 73-107 (376)
364 3ux8_A Excinuclease ABC, A sub 95.2 0.0043 1.5E-07 66.8 1.0 31 14-49 31-61 (670)
365 4b4t_I 26S protease regulatory 95.2 0.012 4.1E-07 59.3 4.0 40 30-70 214-253 (437)
366 2qnr_A Septin-2, protein NEDD5 95.2 0.009 3.1E-07 57.7 3.0 23 32-54 18-40 (301)
367 3d8b_A Fidgetin-like protein 1 95.2 0.012 3.9E-07 58.3 3.8 39 31-70 116-154 (357)
368 2r62_A Cell division protease 95.2 0.0043 1.5E-07 58.5 0.6 23 35-57 47-69 (268)
369 3czp_A Putative polyphosphate 95.2 0.01 3.5E-07 61.2 3.6 37 30-66 41-77 (500)
370 3clv_A RAB5 protein, putative; 95.2 0.017 5.9E-07 51.0 4.7 28 28-55 3-30 (208)
371 1wb9_A DNA mismatch repair pro 95.1 0.0087 3E-07 65.5 3.1 36 14-55 595-630 (800)
372 2chg_A Replication factor C sm 95.1 0.012 4E-07 52.9 3.5 22 35-56 41-62 (226)
373 3thx_B DNA mismatch repair pro 95.1 0.008 2.7E-07 66.6 2.5 36 14-54 660-695 (918)
374 1nrj_B SR-beta, signal recogni 95.1 0.013 4.5E-07 53.0 3.6 27 29-55 9-35 (218)
375 1fnn_A CDC6P, cell division co 95.0 0.015 5.1E-07 57.6 4.2 25 34-58 46-70 (389)
376 2lkc_A Translation initiation 95.0 0.016 5.5E-07 50.2 4.0 26 29-54 5-30 (178)
377 3j16_B RLI1P; ribosome recycli 95.0 0.0074 2.5E-07 64.0 2.0 25 33-57 379-403 (608)
378 3m6a_A ATP-dependent protease 95.0 0.016 5.4E-07 60.8 4.5 37 31-68 107-143 (543)
379 2hf9_A Probable hydrogenase ni 95.0 0.024 8.2E-07 51.6 5.2 37 31-67 37-74 (226)
380 2ce7_A Cell division protein F 95.0 0.026 9E-07 57.9 6.0 36 35-71 52-87 (476)
381 3czp_A Putative polyphosphate 95.0 0.041 1.4E-06 56.7 7.4 37 30-66 298-334 (500)
382 1sxj_A Activator 1 95 kDa subu 95.0 0.016 5.4E-07 60.4 4.3 32 32-66 77-108 (516)
383 1tq4_A IIGP1, interferon-induc 94.9 0.014 4.8E-07 58.9 3.7 24 33-56 70-93 (413)
384 2bjv_A PSP operon transcriptio 94.9 0.012 4.2E-07 55.3 3.1 37 33-69 30-68 (265)
385 2orw_A Thymidine kinase; TMTK, 94.9 0.014 4.7E-07 52.0 3.3 25 32-56 3-27 (184)
386 1z0f_A RAB14, member RAS oncog 94.9 0.015 5.3E-07 50.3 3.5 27 29-55 12-38 (179)
387 2wji_A Ferrous iron transport 94.9 0.016 5.4E-07 50.1 3.5 23 32-54 3-25 (165)
388 1tf7_A KAIC; homohexamer, hexa 94.9 0.011 3.6E-07 61.9 2.7 30 28-57 277-306 (525)
389 1ypw_A Transitional endoplasmi 94.9 0.015 5.3E-07 63.8 4.2 30 28-57 234-263 (806)
390 2yv5_A YJEQ protein; hydrolase 94.9 0.013 4.5E-07 56.5 3.3 25 32-57 165-189 (302)
391 3vfd_A Spastin; ATPase, microt 94.8 0.019 6.4E-07 57.4 4.3 38 32-70 148-185 (389)
392 3bwd_D RAC-like GTP-binding pr 94.8 0.016 5.6E-07 50.4 3.4 29 27-55 3-31 (182)
393 1upt_A ARL1, ADP-ribosylation 94.8 0.023 7.9E-07 48.8 4.4 26 29-54 4-29 (171)
394 2wjg_A FEOB, ferrous iron tran 94.8 0.02 6.7E-07 50.3 3.9 24 31-54 6-29 (188)
395 2gj8_A MNME, tRNA modification 94.8 0.017 5.9E-07 50.3 3.5 24 31-54 3-26 (172)
396 3pfi_A Holliday junction ATP-d 94.8 0.014 4.9E-07 56.9 3.2 34 33-67 56-89 (338)
397 1xp8_A RECA protein, recombina 94.8 0.087 3E-06 52.2 8.9 40 31-70 73-114 (366)
398 3thx_A DNA mismatch repair pro 94.8 0.011 3.8E-07 65.6 2.7 35 14-53 649-683 (934)
399 2iwr_A Centaurin gamma 1; ANK 94.8 0.018 6.2E-07 50.0 3.6 26 29-54 4-29 (178)
400 2dyk_A GTP-binding protein; GT 94.7 0.022 7.4E-07 48.4 3.9 23 33-55 2-24 (161)
401 1v5w_A DMC1, meiotic recombina 94.7 0.036 1.2E-06 54.5 6.0 40 29-68 119-166 (343)
402 2v1u_A Cell division control p 94.7 0.019 6.5E-07 56.6 4.0 27 30-56 42-68 (387)
403 1ky3_A GTP-binding protein YPT 94.7 0.02 6.8E-07 49.7 3.7 27 29-55 5-31 (182)
404 2fn4_A P23, RAS-related protei 94.7 0.022 7.5E-07 49.4 4.0 26 30-55 7-32 (181)
405 2rcn_A Probable GTPase ENGC; Y 94.7 0.015 5E-07 57.5 3.1 25 32-56 215-239 (358)
406 2b8t_A Thymidine kinase; deoxy 94.7 0.018 6.3E-07 52.9 3.5 35 30-64 10-46 (223)
407 3uk6_A RUVB-like 2; hexameric 94.7 0.017 5.6E-07 57.0 3.4 37 32-68 70-107 (368)
408 1z2a_A RAS-related protein RAB 94.7 0.021 7.1E-07 48.9 3.7 24 31-54 4-27 (168)
409 3ihw_A Centg3; RAS, centaurin, 94.6 0.024 8.3E-07 49.9 4.2 27 28-54 16-42 (184)
410 3con_A GTPase NRAS; structural 94.6 0.018 6.2E-07 50.7 3.3 25 31-55 20-44 (190)
411 3co5_A Putative two-component 94.6 0.0058 2E-07 51.9 -0.0 23 34-56 29-51 (143)
412 2o5v_A DNA replication and rep 94.6 0.016 5.4E-07 57.4 3.1 30 26-56 21-50 (359)
413 2r2a_A Uncharacterized protein 94.6 0.02 7E-07 51.6 3.6 24 32-55 5-28 (199)
414 1ewq_A DNA mismatch repair pro 94.6 0.014 4.8E-07 63.5 2.8 34 14-55 566-599 (765)
415 1ko7_A HPR kinase/phosphatase; 94.6 0.028 9.6E-07 54.3 4.6 34 31-68 143-176 (314)
416 1xx6_A Thymidine kinase; NESG, 94.6 0.024 8.2E-07 50.8 3.9 35 30-64 6-42 (191)
417 3pih_A Uvrabc system protein A 94.5 0.0087 3E-07 66.3 1.1 38 5-49 4-41 (916)
418 1sxj_C Activator 1 40 kDa subu 94.5 0.019 6.4E-07 56.2 3.4 23 35-57 49-71 (340)
419 3fwy_A Light-independent proto 94.5 0.036 1.2E-06 53.7 5.4 44 25-68 41-86 (314)
420 2ce2_X GTPase HRAS; signaling 94.5 0.022 7.4E-07 48.4 3.4 24 32-55 3-26 (166)
421 1kao_A RAP2A; GTP-binding prot 94.5 0.024 8.3E-07 48.2 3.7 23 32-54 3-25 (167)
422 3rhf_A Putative polyphosphate 94.5 0.059 2E-06 51.1 6.5 37 30-66 73-109 (289)
423 2a5j_A RAS-related protein RAB 94.5 0.029 1E-06 49.5 4.3 29 26-54 15-43 (191)
424 1sxj_E Activator 1 40 kDa subu 94.5 0.017 5.9E-07 56.6 3.0 22 35-56 39-60 (354)
425 1svi_A GTP-binding protein YSX 94.5 0.022 7.5E-07 50.3 3.4 27 28-54 19-45 (195)
426 2atv_A RERG, RAS-like estrogen 94.4 0.028 9.6E-07 49.9 4.1 26 29-54 25-50 (196)
427 3pqc_A Probable GTP-binding pr 94.4 0.028 9.4E-07 49.4 4.0 26 29-54 20-45 (195)
428 1qhl_A Protein (cell division 94.4 0.0043 1.5E-07 57.4 -1.4 43 4-57 9-52 (227)
429 2ged_A SR-beta, signal recogni 94.4 0.024 8.4E-07 50.0 3.7 26 30-55 46-71 (193)
430 2qby_B CDC6 homolog 3, cell di 94.4 0.024 8.2E-07 56.0 4.0 26 31-56 44-69 (384)
431 3end_A Light-independent proto 94.4 0.04 1.4E-06 53.0 5.4 41 28-68 37-79 (307)
432 2qby_A CDC6 homolog 1, cell di 94.4 0.018 6.3E-07 56.7 3.1 27 30-56 43-69 (386)
433 3t34_A Dynamin-related protein 94.4 0.017 6E-07 57.0 2.9 21 34-54 36-56 (360)
434 1hqc_A RUVB; extended AAA-ATPa 94.4 0.028 9.4E-07 54.3 4.2 36 33-69 39-74 (324)
435 3u61_B DNA polymerase accessor 94.4 0.028 9.6E-07 54.4 4.2 31 32-65 48-78 (324)
436 2p5s_A RAS and EF-hand domain 94.4 0.028 9.4E-07 50.1 3.9 29 26-54 22-50 (199)
437 2zr9_A Protein RECA, recombina 94.4 0.038 1.3E-06 54.4 5.2 39 31-69 60-100 (349)
438 1u8z_A RAS-related protein RAL 94.3 0.028 9.4E-07 47.9 3.7 23 32-54 4-26 (168)
439 2oil_A CATX-8, RAS-related pro 94.3 0.027 9.2E-07 49.7 3.7 26 29-54 22-47 (193)
440 3pvs_A Replication-associated 94.3 0.027 9.3E-07 57.4 4.2 25 33-57 51-75 (447)
441 2ygr_A Uvrabc system protein A 94.3 0.0089 3E-07 66.3 0.5 33 13-50 32-64 (993)
442 2r6f_A Excinuclease ABC subuni 94.3 0.009 3.1E-07 66.0 0.5 33 13-50 30-62 (972)
443 2hxs_A RAB-26, RAS-related pro 94.3 0.031 1.1E-06 48.3 4.0 25 30-54 4-28 (178)
444 3t5g_A GTP-binding protein RHE 94.3 0.02 6.7E-07 49.9 2.7 25 30-54 4-28 (181)
445 1u0l_A Probable GTPase ENGC; p 94.3 0.022 7.4E-07 54.9 3.2 26 32-57 169-194 (301)
446 3cf2_A TER ATPase, transitiona 94.3 0.026 8.9E-07 61.6 4.0 30 28-57 234-263 (806)
447 3oes_A GTPase rhebl1; small GT 94.3 0.026 8.8E-07 50.4 3.4 29 27-55 19-47 (201)
448 2c9o_A RUVB-like 1; hexameric 94.2 0.025 8.4E-07 57.9 3.7 39 32-70 63-102 (456)
449 1wms_A RAB-9, RAB9, RAS-relate 94.2 0.026 8.7E-07 48.9 3.3 24 31-54 6-29 (177)
450 2y8e_A RAB-protein 6, GH09086P 94.2 0.024 8.2E-07 49.0 3.1 23 32-54 14-36 (179)
451 1z08_A RAS-related protein RAB 94.2 0.027 9.1E-07 48.3 3.3 25 31-55 5-29 (170)
452 2erx_A GTP-binding protein DI- 94.2 0.029 9.9E-07 48.0 3.5 23 32-54 3-25 (172)
453 2atx_A Small GTP binding prote 94.2 0.024 8.2E-07 50.1 3.0 26 30-55 16-41 (194)
454 3bc1_A RAS-related protein RAB 94.2 0.03 1E-06 49.0 3.7 25 30-54 9-33 (195)
455 1m2o_B GTP-binding protein SAR 94.2 0.028 9.5E-07 49.8 3.4 28 26-54 18-45 (190)
456 2nzj_A GTP-binding protein REM 94.2 0.031 1.1E-06 48.1 3.7 24 31-54 3-26 (175)
457 1c1y_A RAS-related protein RAP 94.2 0.031 1.1E-06 47.6 3.7 23 32-54 3-25 (167)
458 3pxi_A Negative regulator of g 94.1 0.2 6.8E-06 54.6 10.9 73 34-106 523-605 (758)
459 2zej_A Dardarin, leucine-rich 94.1 0.024 8.2E-07 49.8 2.9 22 33-54 3-24 (184)
460 1sxj_D Activator 1 41 kDa subu 94.1 0.027 9.2E-07 55.0 3.5 23 35-57 61-83 (353)
461 3tw8_B RAS-related protein RAB 94.1 0.027 9.2E-07 48.8 3.2 24 30-53 7-30 (181)
462 3lxw_A GTPase IMAP family memb 94.1 0.028 9.7E-07 52.4 3.5 27 28-54 17-43 (247)
463 1z06_A RAS-related protein RAB 94.1 0.032 1.1E-06 49.1 3.7 25 30-54 18-42 (189)
464 3lda_A DNA repair protein RAD5 94.1 0.022 7.4E-07 57.2 2.8 26 30-55 176-201 (400)
465 3k1j_A LON protease, ATP-depen 94.0 0.006 2E-07 64.9 -1.5 28 31-58 59-86 (604)
466 1g16_A RAS-related protein SEC 94.0 0.031 1.1E-06 47.8 3.4 23 32-54 3-25 (170)
467 3qkt_A DNA double-strand break 94.0 0.036 1.2E-06 54.3 4.2 25 32-56 23-47 (339)
468 2g6b_A RAS-related protein RAB 94.0 0.034 1.2E-06 48.2 3.7 26 30-55 8-33 (180)
469 2q6t_A DNAB replication FORK h 94.0 0.1 3.4E-06 53.2 7.6 39 29-67 197-238 (444)
470 4dsu_A GTPase KRAS, isoform 2B 94.0 0.031 1.1E-06 48.8 3.3 24 31-54 3-26 (189)
471 3te6_A Regulatory protein SIR3 94.0 0.028 9.4E-07 54.6 3.2 28 30-57 43-70 (318)
472 3c5c_A RAS-like protein 12; GD 94.0 0.035 1.2E-06 48.9 3.7 26 29-54 18-43 (187)
473 2z43_A DNA repair and recombin 94.0 0.044 1.5E-06 53.3 4.7 39 30-68 105-151 (324)
474 2fv8_A H6, RHO-related GTP-bin 94.0 0.024 8.2E-07 50.9 2.6 28 27-54 20-47 (207)
475 1t9h_A YLOQ, probable GTPase E 93.9 0.012 3.9E-07 57.0 0.4 25 31-55 172-196 (307)
476 3lxx_A GTPase IMAP family memb 93.9 0.033 1.1E-06 51.4 3.5 25 30-54 27-51 (239)
477 2j0v_A RAC-like GTP-binding pr 93.9 0.042 1.4E-06 49.3 4.2 29 26-54 3-31 (212)
478 2r44_A Uncharacterized protein 93.9 0.026 8.8E-07 54.9 2.9 32 34-66 48-79 (331)
479 2gf9_A RAS-related protein RAB 93.9 0.039 1.3E-06 48.5 3.9 26 29-54 19-44 (189)
480 1z0j_A RAB-22, RAS-related pro 93.9 0.03 1E-06 47.9 3.1 25 31-55 5-29 (170)
481 3kkq_A RAS-related protein M-R 93.9 0.043 1.5E-06 47.8 4.1 24 31-54 17-40 (183)
482 1knx_A Probable HPR(Ser) kinas 93.9 0.031 1.1E-06 53.9 3.4 35 31-69 146-180 (312)
483 1cp2_A CP2, nitrogenase iron p 93.9 0.056 1.9E-06 50.7 5.1 36 33-68 2-39 (269)
484 2o52_A RAS-related protein RAB 93.9 0.029 1E-06 50.0 3.0 30 25-54 18-47 (200)
485 2bme_A RAB4A, RAS-related prot 93.9 0.036 1.2E-06 48.4 3.6 26 30-55 8-33 (186)
486 2a9k_A RAS-related protein RAL 93.9 0.037 1.3E-06 48.1 3.7 24 31-54 17-40 (187)
487 2efe_B Small GTP-binding prote 93.9 0.034 1.2E-06 48.3 3.3 25 30-54 10-34 (181)
488 1r2q_A RAS-related protein RAB 93.9 0.026 8.9E-07 48.2 2.6 24 31-54 5-28 (170)
489 2gf0_A GTP-binding protein DI- 93.9 0.044 1.5E-06 48.4 4.2 25 30-54 6-30 (199)
490 2z4s_A Chromosomal replication 93.9 0.03 1E-06 57.0 3.4 25 32-56 130-154 (440)
491 1u94_A RECA protein, recombina 93.9 0.059 2E-06 53.2 5.4 40 30-69 61-102 (356)
492 3hu3_A Transitional endoplasmi 93.9 0.036 1.2E-06 57.2 4.0 35 31-66 237-271 (489)
493 2qgz_A Helicase loader, putati 93.9 0.033 1.1E-06 53.9 3.5 26 32-57 152-177 (308)
494 3tkl_A RAS-related protein RAB 93.8 0.038 1.3E-06 48.7 3.7 25 30-54 14-38 (196)
495 1vg8_A RAS-related protein RAB 93.8 0.039 1.3E-06 49.2 3.7 27 29-55 5-31 (207)
496 2afh_E Nitrogenase iron protei 93.8 0.063 2.1E-06 51.1 5.3 38 32-69 2-41 (289)
497 1ek0_A Protein (GTP-binding pr 93.7 0.044 1.5E-06 46.8 3.8 22 33-54 4-25 (170)
498 3k53_A Ferrous iron transport 93.7 0.038 1.3E-06 52.2 3.6 24 32-55 3-26 (271)
499 2h17_A ADP-ribosylation factor 93.7 0.033 1.1E-06 48.7 3.0 27 28-54 17-43 (181)
500 3qf7_A RAD50; ABC-ATPase, ATPa 93.7 0.025 8.7E-07 56.1 2.5 26 30-56 22-47 (365)
No 1
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.60A {Burkholderia pseudomallei} SCOP: c.61.1.1
Probab=100.00 E-value=1e-63 Score=461.78 Aligned_cols=208 Identities=30% Similarity=0.532 Sum_probs=200.0
Q ss_pred ccceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEee
Q 035513 241 YSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISII 319 (473)
Q Consensus 241 ~~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~il 319 (473)
..++|+++| |+++|++|+|||++|++.+||++++||+++|+|||+++||+++++|+||+| .+.|.++. +++|+||||
T Consensus 8 ~~~v~v~~h-p~i~~~lt~lRd~~t~~~~Fr~~~~rl~~lL~yEa~~~lp~~~~~V~TP~g-~~~g~~~~~~~i~~V~Il 85 (217)
T 3dmp_A 8 FPNLFILDH-PLIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPLV-EIDAPVIAGKKLAIVPVL 85 (217)
T ss_dssp CTTEEEECC-HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSC-EEEEEEECGGGEEEEEEE
T ss_pred CCCeEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCe-EEEEEEecCCcEEEEEec
Confidence 468999876 799999999999999999999999999999999999999999999999999 68999986 899999999
Q ss_pred ccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEE
Q 035513 320 RSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIF 399 (473)
Q Consensus 320 raG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~ 399 (473)
|+|++|++++++++|++++|+|+++||+.|.+..||.++| +++++.|||+|||+|||+|+++|++.|+++|+++++|++
T Consensus 86 RaG~~m~~~l~~~ip~a~vg~i~~~Rd~~t~p~~~~~~lP-~i~~~~VilvD~~laTG~T~~~ai~~L~~~G~pe~~I~~ 164 (217)
T 3dmp_A 86 RAGVGMSDGLLELIPSARVGHIGVYRADDHRPVEYLVRLP-DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMF 164 (217)
T ss_dssp TTTHHHHHHHHHHCTTSEECEEECSCCCSSSCCCSEEECC-CCTTCEEEEECSEESSSHHHHHHHHHHHTTTCCGGGEEE
T ss_pred ccchHHHHHHHHhCcCCceeEEEEEECCCCCcEEEeecCC-CCCCCEEEEEcCcccccHHHHHHHHHHHHcCCCcCeEEE
Confidence 9999999999999999999999999999986688999999 999999999999999999999999999999998899999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 400 LNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 400 ~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
+|++|+|+|++++.++||+|+||||+||++|||+|||+|||||||||||||+
T Consensus 165 ~~~vaa~egl~~l~~~~P~v~i~ta~iD~~Lne~~yIvPGlGDaGDR~fgt~ 216 (217)
T 3dmp_A 165 LALVAAPEGVQVFQDAHPDVKLYVASLDSHLDDHAYIVPGLGDAGDRLFGTK 216 (217)
T ss_dssp ECSEECHHHHHHHHHHCTTCEEEESEECCEECTTSCEESSCSCHHHHHHC--
T ss_pred EEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCCCccCCCCCHHHhhcCCC
Confidence 9999999999999999999999999999999999999999999999999996
No 2
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase; 1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D 1jlr_A* 1jls_B* 1upf_D 1upu_D*
Probab=100.00 E-value=5.9e-62 Score=456.95 Aligned_cols=217 Identities=50% Similarity=0.927 Sum_probs=209.1
Q ss_pred ccccccccceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceee
Q 035513 235 HDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLC 314 (473)
Q Consensus 235 ~~l~~~~~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~ 314 (473)
.+++.+++|++++.++|+++|++|+|||++|++.+||++++||++||+|||+++||+++++|+||+|..+.|..+.+++|
T Consensus 26 ~~~~~~~~~v~~~~~hp~i~~~lt~lRd~~t~~~~Fr~~~~rl~~ll~yEa~~~lp~~~~~v~TP~g~~~~g~~~~~~l~ 105 (243)
T 1bd3_D 26 QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPKEEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKIC 105 (243)
T ss_dssp HHHHHHCTTEEECCCCHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCEEEEEEECTTSCEEEEEEECCCEE
T ss_pred cccccCCCcEEEecCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhcCCceeEEEECCCcceEeeeeccCcEE
Confidence 35567788999998889999999999999999999999999999999999999999999999999998899988889999
Q ss_pred EEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCC
Q 035513 315 GISIIRSGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVP 393 (473)
Q Consensus 315 ~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~ 393 (473)
+|+|||+|++|++++.+++|++++|||+++||+.|++ ..||.++|.++++++|||+|||+|||+|+.+|++.|+++|++
T Consensus 106 ~V~ILRaG~~m~~~l~~~ip~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~~r~VilvDdmlaTG~T~~~ai~~L~~~G~~ 185 (243)
T 1bd3_D 106 GVSIVRAGESMESGLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEVLLRLGVK 185 (243)
T ss_dssp EEEEETTTHHHHHHHHHHSTTCCEEEEEEEECSSSCCEEEEEEECCTTGGGSEEEEECSEESSCHHHHHHHHHHHHHTCC
T ss_pred EEEEEcchHHHHHHHHHhCCcCeeeeEEEEEcCCCCCeEEEeccCCcccCCCEEEEECCccccHHHHHHHHHHHHHcCCC
Confidence 9999999999999999999999999999999998875 788999999999999999999999999999999999999998
Q ss_pred CCcEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 394 ESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 394 ~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
+++|+++|++++++|++++.++||++.|||++||++|||+|||+|||||||||||||+
T Consensus 186 p~~I~~~~lvaap~g~~~l~~~~p~v~I~ta~ID~~Lne~~yIvPGlGDaGDR~fGt~ 243 (243)
T 1bd3_D 186 EERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDRYFGTM 243 (243)
T ss_dssp GGGEEEEEEEECHHHHHHHHHHCTTSEEEEEEECSEECTTCCEESCCSCHHHHHHTCC
T ss_pred cceEEEEEEEeCHHHHHHHHHHCCCCEEEEEEecCCcCCCceecCCCCcHHHhhcCCC
Confidence 8999999999999999999999999999999999999999999999999999999984
No 3
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1 phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A {Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A* 1xtu_A* 1xtv_A* 3g6w_A*
Probab=100.00 E-value=9.2e-61 Score=442.19 Aligned_cols=203 Identities=25% Similarity=0.401 Sum_probs=193.8
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEe-c-ceeeEEEeec
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVF-C-RRLCGISIIR 320 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~-~-~~~~~v~ilr 320 (473)
++|+++| |+++|++|+|||++|++.+||++++||++||+|||+++||+++++|+||+|..+.|..+ . +++|+|||+|
T Consensus 2 ~v~v~~h-p~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~l~~~~~~v~TP~g~~~~~~~~~~~~~i~iV~IlR 80 (216)
T 1xtt_A 2 PLYVIDK-PITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTKGVDITDLNNIVIINILR 80 (216)
T ss_dssp CEEECCC-HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHTTSCCEEEEEECTTSCEEEEEECGGGGSEEEEEEET
T ss_pred ceEEcCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCceeEEEECCCccEecceEecCCCcEEEEeecC
Confidence 5889885 79999999999999999999999999999999999999999999999999987777544 4 7999999999
Q ss_pred cCchhHHHHHhhcCCceeeEEEEEEcCCC-------C-ceEEeecCCCCCCCc--EEEEEcccccccHHHHHHHHHHHhc
Q 035513 321 SGESMENALRACCKGIKIGKILIHREGNS-------G-RQLIYQKLPADISSR--HVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 321 aG~~~~~~~~~~~p~a~~g~i~~~r~~~~-------~-~~~~~~~lP~~~~~~--~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
||++|++++++++|++++|+|+++||+.| . +..||.++| +++++ .|||+|||+|||+|+.+|++.|++
T Consensus 81 aG~~m~~gl~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~p~~~y~klP-~i~~~~~~VilvDp~laTG~T~~~ai~~L~~- 158 (216)
T 1xtt_A 81 AAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYYKKIP-DIRAKVDNVIIADPMIATASTMLKVLEEVVK- 158 (216)
T ss_dssp TTHHHHHHHHHHCTTCEEEEEEEEECCCCCSSCCSCCCEEEEEEECC-CCCTTTCEEEEECSEESSSHHHHHHHHHHGG-
T ss_pred CcHHHHHHHHHHcccCccceEEEEECCCcccccccccCceEeeccCC-CccCCcceEEEEcCCccchHHHHHHHHHHHh-
Confidence 99999999999999999999999999887 3 488999999 99999 999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccC
Q 035513 391 GVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFG 449 (473)
Q Consensus 391 g~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg 449 (473)
|++ ++|+++|++|+|+|++++.++||+|+||||+||++|||+|||+||||||||||||
T Consensus 159 G~p-~~I~~~~~vaa~~gl~~l~~~~P~v~I~ta~iD~~Lne~~yIvPGlGDaGDR~fg 216 (216)
T 1xtt_A 159 ANP-KRIYIVSIISSEYGVNKILSKYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216 (216)
T ss_dssp GCC-SEEEEECSEEEHHHHHHHHHHCTTSEEEESEEESEECTTSCEESSCSCHHHHHHC
T ss_pred CCC-CeEEEEEEecCHHHHHHHHHHCCCcEEEEEEecCCcCCCCCccCCCCChHhhccC
Confidence 986 8999999999999999999999999999999999999999999999999999998
No 4
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A {Escherichia coli}
Probab=100.00 E-value=6.4e-60 Score=434.58 Aligned_cols=205 Identities=27% Similarity=0.431 Sum_probs=197.6
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeecc
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRS 321 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilra 321 (473)
++|+++| |+++|++|+|||++|++.+||++++||++||+|||+++||+++++|+||+| .+.|..+. +++|+|||||+
T Consensus 2 ~v~v~~h-p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~-~~~g~~~~g~~l~~V~ILra 79 (208)
T 2ehj_A 2 KIVEVKH-PLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNG-PVEIDQIKGKKITVVPILRA 79 (208)
T ss_dssp EEEECCC-HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEEETTE-EEEEEEECSSCCEEEEBTTG
T ss_pred CeEEcCC-HHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-cEEEEEecCCceEEEEeecC
Confidence 5788665 899999999999999999999999999999999999999999999999999 58899887 89999999999
Q ss_pred CchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEE
Q 035513 322 GESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400 (473)
Q Consensus 322 G~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~ 400 (473)
|++|++++.+++|.+++|+|+++|+++|++ ..||.++|.++++++|+|+|||+|||+|+.+|++.|+++|+ ++|+++
T Consensus 80 G~~~~~~l~~~ip~~~vg~i~~~rd~~t~~~~~~~~~lp~di~~r~VilvDd~laTG~T~~~ai~~L~~~G~--~~I~~~ 157 (208)
T 2ehj_A 80 GLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDERMALIVDPMLATGGSVIATIDLLKKAGC--SSIKVL 157 (208)
T ss_dssp GGGGHHHHHHHCTTCEECEEEEEECTTTCCEEEEEEECCSCGGGCEEEEEEEEESSCHHHHHHHHHHHHTTC--CEEEEE
T ss_pred HHHHHHHHHHhCCcCceeEEEEEEcCCCCceEEEecCCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCC--CEEEEE
Confidence 999999999999999999999999998875 77899999999999999999999999999999999999997 799999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 401 NLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 401 ~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
|++++|+|++++.++||++.|||++||++|||+|||+|||||||||||||+
T Consensus 158 ~lv~~p~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 2ehj_A 158 VLVAAPEGIAALEKAHPDVELYTASIDQGLNEHGYIIPGLGDAGDKIFGTK 208 (208)
T ss_dssp EEEECHHHHHHHHHHCTTSEEEESCBCSEECTTSCEESCCSCHHHHHHTCC
T ss_pred EEEeCHHHHHHHHHHCCCcEEEEEecCCCCCCCceecCCCCcHHHhhcCCC
Confidence 999999999999999999999999999999999999999999999999985
No 5
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage, oligomerization, structural genomics, RI structural genomics/proteomics initiative; 2.10A {Thermus thermophilus} SCOP: c.61.1.1
Probab=100.00 E-value=7e-60 Score=434.29 Aligned_cols=205 Identities=29% Similarity=0.528 Sum_probs=190.8
Q ss_pred ceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeecc
Q 035513 243 NVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRS 321 (473)
Q Consensus 243 ~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilra 321 (473)
++|+++| |+++|++|+|||++|++.+||++++||++||+|||++++|+++++|+||+| .+.|..+. +++|+|||||+
T Consensus 2 ~v~v~~~-p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~g-~~~g~~~~g~~l~~V~ILra 79 (208)
T 1v9s_A 2 RITLVDH-PLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIA-PARVKVLSGKKLALVAILRA 79 (208)
T ss_dssp CEEECCC-HHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCEEEEEEECSSS-EEEEEEECSSCCEEEEETTT
T ss_pred ceEEcCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHccCCCeEEEEECCCc-eEEEEEecCCceEEEEeccc
Confidence 5788665 899999999999999999999999999999999999999999999999999 57899887 89999999999
Q ss_pred CchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEE
Q 035513 322 GESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400 (473)
Q Consensus 322 G~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~ 400 (473)
|++|++++.+++|++++|+|+++|+++|++ ..||.++|.++++++|+|+|||+|||+|+.+|++.|+++|+ ++|+++
T Consensus 80 G~~~~~~l~~~ip~~~vg~I~~~rd~~t~~~~~~~~~lp~di~~r~vilvDd~laTG~T~~~ai~~L~~~G~--~~I~~~ 157 (208)
T 1v9s_A 80 GLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAERRAFLLDPMLATGGSASLALSLLKERGA--TGVKLM 157 (208)
T ss_dssp HHHHHHHHHTTCTTCEEEEEEEC---------CEEEECCSCGGGSCEEEECSEESSSHHHHHHHHHHHHTTC--CSCEEE
T ss_pred hHHHHHHHHHhCCCCeeeEEEEEEcCCCCCceEEeccCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCC--CEEEEE
Confidence 999999999999999999999999988875 77899999999999999999999999999999999999997 799999
Q ss_pred EEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 401 NLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 401 ~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
|++++|+|++++.++||++.|||++||++|||+|||+|||||||||||||+
T Consensus 158 ~lv~~~~g~~~l~~~~p~v~I~t~~iD~~lne~~yIvPGlGDaGDR~fgt~ 208 (208)
T 1v9s_A 158 AILAAPEGLERIAKDHPDTEVVVAAIDERLNDHGYIVPGLGDAGDRIYGTK 208 (208)
T ss_dssp EEEECHHHHHHHHHHCTTCEEEEEEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEeCHHHHHHHHHHCCCcEEEEEeecCCCCCCceecCCCCcHHHhccCCC
Confidence 999999999999999999999999999999999999999999999999985
No 6
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI, protein structure initiative, joint center for structu genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP: c.61.1.1
Probab=100.00 E-value=8.9e-59 Score=429.87 Aligned_cols=206 Identities=31% Similarity=0.509 Sum_probs=197.0
Q ss_pred cceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeec
Q 035513 242 SNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIR 320 (473)
Q Consensus 242 ~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilr 320 (473)
+.+++ .++|++++++|+|||++|++.+||++++||++||+|||+++||+++++|+||+| .+.|..+. +++|+|||||
T Consensus 14 ~~~~~-~~~p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~yEa~~~lp~~~~~v~TP~g-~~~g~~~~g~~lviV~Ilr 91 (221)
T 1o5o_A 14 KNLVV-VDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEVEVETPIT-KTIGYRINDKDIVVVPILR 91 (221)
T ss_dssp TTEEE-CCCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEECSSC-EEEEEECCSTTEEEEEEET
T ss_pred ceEEe-cCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCceEEEEECCCc-eEEEEEecCCeEEEEEEec
Confidence 45566 455899999999999999999999999999999999999999999999999999 57898887 8999999999
Q ss_pred cCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEE
Q 035513 321 SGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIF 399 (473)
Q Consensus 321 aG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~ 399 (473)
+|++|++++.+++|++++|+|+++|++.+.+ ..||.++|.++++++|||+|||+|||+|+.+|++.|+++|+ ++|++
T Consensus 92 gG~~~~~~l~~~lp~a~vg~I~~~Rd~~t~~~~~~~~~lp~di~gr~VilvDd~laTG~Tl~~ai~~L~~~G~--~~I~~ 169 (221)
T 1o5o_A 92 AGLVMADGILELLPNASVGHIGIYRDPETLQAVEYYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGA--KKITL 169 (221)
T ss_dssp THHHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECCCCCTTCEEEEECSEESSSHHHHHHHHHHHHTTC--CEEEE
T ss_pred chHHHHHHHHHhCCCCcEEEEEEEEcCCCCceeEEEecCCCccCCCEEEEECCccccHHHHHHHHHHHHHcCC--CEEEE
Confidence 9999999999999999999999999988765 78899999999999999999999999999999999999998 79999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 400 LNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 400 ~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
+|++++|+|++++.++||++.|||++||++|||+|||+|||||||||||||+
T Consensus 170 ~~lv~~~~g~~~l~~~~p~v~I~t~~ID~~Lne~~yIvPGlGDaGDR~fGt~ 221 (221)
T 1o5o_A 170 VALIAAPEGVEAVEKKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRTK 221 (221)
T ss_dssp ECSEECHHHHHHHHHHCTTCEEEESEECSEECTTSCEESSCSCHHHHHHTCC
T ss_pred EEEEeCHHHHHHHHHHCCCcEEEEEeccCCCCCCceecCCCCcHHHhccCCC
Confidence 9999999999999999999999999999999999999999999999999985
No 7
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A {Aquifex aeolicus}
Probab=100.00 E-value=9.6e-57 Score=413.44 Aligned_cols=203 Identities=23% Similarity=0.387 Sum_probs=195.1
Q ss_pred eeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeeccC
Q 035513 244 VDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIRSG 322 (473)
Q Consensus 244 v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilraG 322 (473)
+|+++| |+++|++|+|||++|++.+||++++||++||+|||++++|+++++|+||+| .+.|..+. +++|+|||||+|
T Consensus 2 v~~~~h-p~i~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~v~TP~~-~~~~~~~~g~~~~~V~ILraG 79 (208)
T 2e55_A 2 IVELSH-PLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIG-NKRFNYLNEEEIVFVPILRAG 79 (208)
T ss_dssp EEECCC-HHHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHTTTCCCEEEEEEETTE-EEEEEECCGGGEEEEEEETTT
T ss_pred EEecCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhhCCCceeEEeCCCC-ceEeeeecCCcEEEEEEecch
Confidence 566555 899999999999999999999999999999999999999999999999999 57888887 899999999999
Q ss_pred chhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEE
Q 035513 323 ESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLN 401 (473)
Q Consensus 323 ~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~ 401 (473)
++|++++.+++|.+++|||+++|++++++ ..||.++| ++++++|+|+|||+|||+|+.+|++.|+++|+ ++|+++|
T Consensus 80 ~~~~~~l~~~lp~~~vg~i~~~rd~~t~~~~~~~~~lp-di~~r~vilvDd~laTG~T~~~ai~~L~~~G~--~~I~~~~ 156 (208)
T 2e55_A 80 LSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLP-ELKGKIVVILDPMLATGGTLEVALREILKHSP--LKVKSVH 156 (208)
T ss_dssp HHHHHHHHHHSTTCEECEEEEEECTTTCCEEEEEEECC-CCBTSEEEEECSEESSSHHHHHHHHHHHTTCB--SEEEEEE
T ss_pred HHHHHHHHHhCCCCcEEEEEEEEecCCCceEEEecCCC-CCCCCEEEEECCccccHHHHHHHHHHHHHcCC--CEEEEEE
Confidence 99999999999999999999999988774 78899999 99999999999999999999999999999997 8999999
Q ss_pred EEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 402 LIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 402 ~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
++++++|++++.++||++.|||++||++||+++||+|||||||||+|||+
T Consensus 157 lv~~~~g~~~l~~~~p~v~I~t~~iD~~l~e~~~I~PglgdagdR~fgt~ 206 (208)
T 2e55_A 157 AIAAPEGLKRIEEKFKEVEIFVGNVDERLNDKGYIIPGLGDIGDRLYAVS 206 (208)
T ss_dssp EEECHHHHHHHHHHCTTSEEEEEEECSEECTTSCEESSCSSHHHHHHSCC
T ss_pred EEECHHHHHHHHHHCCCcEEEEEeecCCCCCCceeccCccHHHHHhcCCC
Confidence 99999999999999999999999999999999999999999999999996
No 8
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A {Bacillus caldolyticus} SCOP: c.61.1.1
Probab=100.00 E-value=4e-54 Score=399.31 Aligned_cols=206 Identities=33% Similarity=0.542 Sum_probs=197.3
Q ss_pred cceeeccccceeeeeeeeeecCCCCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEec-ceeeEEEeec
Q 035513 242 SNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFC-RRLCGISIIR 320 (473)
Q Consensus 242 ~~v~v~~~~~~~~~~~t~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~-~~~~~v~ilr 320 (473)
.++|+++| |+++|++|+|||++|++.+||++++||++||+|||++++|+++.+|+||++ .+.|.+++ +++|+|||||
T Consensus 2 ~~v~~~~~-p~~~~~lt~lRd~~t~~~~Fr~~~~~l~~ll~~ea~~~l~~~~~~V~tPl~-~~~~~~~~~~~~~vV~Ilr 79 (209)
T 1i5e_A 2 GKVYVFDH-PLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVS-KARAKVIAGKKLGVIPILR 79 (209)
T ss_dssp CCEEECCC-HHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHGGGCCEEEEEEECSSC-EEEEEEECCCCEEEEEBTT
T ss_pred CCeEEcCC-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCcceEEecCCc-eeeeeEecCCceEEEEEec
Confidence 46888765 899999999999999999999999999999999999999999999999999 47888887 7999999999
Q ss_pred cCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEE
Q 035513 321 SGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIF 399 (473)
Q Consensus 321 aG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~ 399 (473)
+|++|++++.+.+|++++|+++++|++.+.+ ..||.++|.++++++|+|+|||++||+|+.+|++.|+++|+ ++|.+
T Consensus 80 ~G~~~~~~L~~~l~~~~~~~i~~~r~~~t~~~~~~~~~lp~~i~~~~VllvDd~l~TG~T~~~a~~~L~~~G~--~~I~~ 157 (209)
T 1i5e_A 80 AGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPSDVEERDFIIVDPMLATGGSAVAAIDALKKRGA--KSIKF 157 (209)
T ss_dssp GGGGGHHHHHHHCTTSEECEEEEECCTTCSSCEEEEEECCTTTTTSEEEEECSEESSSHHHHHHHHHHHHTTC--CCEEE
T ss_pred CChHHHHHHHHhCCCCeEEEEEEEEcCCCCceEEEEEcCCCccCCCEEEEEcCCCcCHHHHHHHHHHHHHcCC--CEEEE
Confidence 9999999999999999999999999988765 68899999999999999999999999999999999999998 79999
Q ss_pred EEEEeCHHHHHHHHHhCCCcEEEEEeecCCCCCCcceecCCCchhhhccCCC
Q 035513 400 LNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGTD 451 (473)
Q Consensus 400 ~~~~~~~~g~~~~~~~~p~v~i~~~~id~~l~~~~~i~PGlGd~gdr~fg~~ 451 (473)
+|++++++|++++.++||++.|||++||++||+++||+|||||||||||||+
T Consensus 158 ~~lv~~~~g~~~l~~~~p~~~I~t~~id~~l~~~~~i~Pglgdagdr~fgt~ 209 (209)
T 1i5e_A 158 MCLIAAPEGVKAVETAHPDVDIYIAALDERLNDHGYIVPGLGDAGDRLFGTK 209 (209)
T ss_dssp ECSEECHHHHHHHHHHCTTCEEEESEECCEECTTCCEESSCSCHHHHHHSCC
T ss_pred EEEEECHHHHHHHHHhCcCcEEEEEEeCCCCCCCceEccCCchHHHHhcCCC
Confidence 9999999999999999999999999999999999999999999999999985
No 9
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=99.90 E-value=8.1e-24 Score=202.58 Aligned_cols=208 Identities=56% Similarity=0.938 Sum_probs=161.3
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-------CCEEEEecCCCCCCCCHHH--HhhccCccCCCCccccHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-------QRVVLVNQDSFYHSLTDEK--LQNLHDYNFDHPDAFDTEL 96 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-------~~~~~is~D~~~~~~~~~~--~~~~~~~~f~~~~~~d~~~ 96 (473)
.+...++.+|+|+|++||||||+|+.|++.++- ..+.++++|+|++.+.... +...+.+.|++|+.+|.+.
T Consensus 16 ~~~~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~~~~~~~~~~~~~g~~~f~~~~~~d~~~ 95 (252)
T 1uj2_A 16 QPNGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAKALKGQFNFDHPDAFDNEL 95 (252)
T ss_dssp -----CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTCSCTTSGGGBCHHH
T ss_pred hccCCCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccccccChhhhhhhccCCCCCCCcchhhHHH
Confidence 345567889999999999999999999998872 1345899999998776543 3456778899999999999
Q ss_pred HHHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccc
Q 035513 97 LLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 97 l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~ 176 (473)
+.+.|..+..+..+..|.|++..+.+..........+++|+||++.++++.+.+.+|++|||+++.+++++|+..|+...
T Consensus 96 l~~~L~~l~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~vIveG~~~~~~~~~~~~~d~vi~l~~~~e~~~~R~~~R~~~~ 175 (252)
T 1uj2_A 96 ILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFEGILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISE 175 (252)
T ss_dssp HHHHHHHHHTTCCEEEEEEETTTTEEEEEEEEECCCSEEEEECTTTTSSHHHHHHCSEEEEEECCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCeeecCccccccccCCCceeeeCCCcEEEEeeeccccCHHHHHhcCeeEEEeCCHHHHHHHHHHHHHhh
Confidence 99999999998888899998888766643333445689999999887777888889999999999999999999987555
Q ss_pred cCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeeccc
Q 035513 177 RGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~ 233 (473)
++.+.+.+..+|..+..+.|..++.+....||++|++..++...++++.+.|...+.
T Consensus 176 rg~~~e~i~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~id~~~s~e~v~~~I~~~l~ 232 (252)
T 1uj2_A 176 RGRDLEQILSQYITFVKPAFEEFCLPTKKYADVIIPRGADNLVAINLIVQHIQDILN 232 (252)
T ss_dssp SCCCHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEETGGGCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHhccHHHHHHhhhhhhcCcEEEecCCCChhHHHHHHHHHHHHHc
Confidence 667788888888887777788888888888999994332334445555555554443
No 10
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=99.88 E-value=3.1e-22 Score=196.84 Aligned_cols=188 Identities=27% Similarity=0.413 Sum_probs=150.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEecCCCCCCCCHHHHhhccC-ccCCCCccccHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD----QRVVLVNQDSFYHSLTDEKLQNLHD-YNFDHPDAFDTELLLSDME 102 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~----~~~~~is~D~~~~~~~~~~~~~~~~-~~f~~~~~~d~~~l~~~l~ 102 (473)
..+++.+|||+|++||||||+++.|+..+.. ..+.++++|+|+.. .......+. ..++.|+++|.+.+.+.+.
T Consensus 88 ~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D~f~~~--~~~l~~~~~~~~~g~P~~~D~~~l~~~L~ 165 (321)
T 3tqc_A 88 EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYS--NAKLEKQGLMKRKGFPESYDMPSLLRVLN 165 (321)
T ss_dssp CCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBCC--HHHHHHTTCGGGTTSGGGBCHHHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeecccccc--hhhhhhHHHHhhccCcccccHHHHHHHHH
Confidence 3567899999999999999999999998752 35889999999843 333333222 2366799999999999999
Q ss_pred HhhcCC-ceecccccccccccccc-ccccCCCcEEEEecccccCChh----------hhhccCeEEEEecChhHHHHHhh
Q 035513 103 KLKHGQ-AVSIPDYDFKSHKRKQQ-SRLINPSDVFILEGILVLHDPR----------VRDLMSMKIFVDTDSDVRLSRRI 170 (473)
Q Consensus 103 ~l~~g~-~i~~p~~~~~~~~~~~~-~~~~~~~~viIlEG~~~l~~~~----------~~~~~Dl~I~L~~~~e~~~~R~~ 170 (473)
.++.|+ .+..|.|++..+.+... ......++++|+||++++..+. +.+.+|.+|||+++.+++++|++
T Consensus 166 ~L~~g~~~v~~P~yd~~~~~r~~~~~~~v~~~dIVIvEGi~lL~~~~~~~~~~~~~~l~~~~D~~I~Vda~~d~~~~R~i 245 (321)
T 3tqc_A 166 AIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLNILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYI 245 (321)
T ss_dssp HHHTTCSSEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCCCSSSSSCCCCGGGGCSEEEEEECCHHHHHHHHH
T ss_pred hhhccccccccchhhhhccccccCceeeccCCCEEEEEccccccccccccccchhhhhhhhcCeEEEEECCHHHHHHHHH
Confidence 999998 89999999999988743 3345678999999999998763 78899999999999999999999
Q ss_pred hccccccC---------------CChH----HHHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 171 QRDTVERG---------------RDIE----DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 171 ~R~~~~~~---------------~~~~----~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
+|+...++ .+.+ ....+|.....|+++.+|.|++..||+|+..+.++
T Consensus 246 ~Rd~~~r~~a~~~~~s~~~~y~~~s~~ea~~~a~~~w~~~~~pn~~~~I~ptr~~Adlil~~g~~~ 311 (321)
T 3tqc_A 246 DRVLSFWRTTFKDPHSYFHYLTQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADH 311 (321)
T ss_dssp HHHHHHHHTGGGSTTSTTGGGGGSCHHHHHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEEECTTS
T ss_pred HhcchhhhhhccChHHHHHHHhcCCHHHHHHHHHHHHHhccccCHHHhCccCccCceEEEecCCCC
Confidence 99855432 1222 23345666667999999999999999999877544
No 11
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=99.88 E-value=3.4e-22 Score=185.74 Aligned_cols=205 Identities=45% Similarity=0.802 Sum_probs=165.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
.+++.+|+|+|++||||||+++.|+..++. .+.++++|.+++............+.|+.+..++.+.+.+.+..+..++
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~-~i~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 81 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE-RVALLPMDHYYKDLGHLPLEERLRVNYDHPDAFDLALYLEHAQALLRGL 81 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG-GEEEEEGGGCBCCCTTSCHHHHHHSCTTSGGGBCHHHHHHHHHHHHTTC
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC-CeEEEecCccccCcccccHHHhcCCCCCChhhhhHHHHHHHHHHHHcCC
Confidence 456789999999999999999999998753 4889999998865432222222334466778888888889998888888
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHH
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQY 188 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 188 (473)
.+..|.++.+...+......+....++++||.+++.++.+...+|.+|||+++.+.++.|+++|+...++.+...+.+++
T Consensus 82 ~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 82 PVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp CEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred CcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 88888887777765543333455789999999999888888899999999999999999999987656788888888888
Q ss_pred HhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecccc
Q 035513 189 ARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 189 ~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~ 234 (473)
.....+.|..|+.++...||+||++++.+...++.+.+.|+..+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~aD~ii~~~~~~~~~~~~~~~~i~~~~~~ 207 (211)
T 3asz_A 162 LEQVKPMHLHFVEPTKRYADVIVPRGGQNPVALEMLAAKALARLAR 207 (211)
T ss_dssp HHTHHHHHHHTTGGGGGGCSEEEESTTSCHHHHHHHHHHHTHHHHC
T ss_pred HHhhhhhHHHhcccchhcCeEEEeCCCcchHHHHHHHHHHHHHHHh
Confidence 8888899999999999999999999888788888888888766654
No 12
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=99.87 E-value=3.1e-21 Score=183.83 Aligned_cols=216 Identities=52% Similarity=0.907 Sum_probs=162.8
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-------CCEEEEecCCCCCCCCHHHH--hhccC
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-------QRVVLVNQDSFYHSLTDEKL--QNLHD 83 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-------~~~~~is~D~~~~~~~~~~~--~~~~~ 83 (473)
+...|+++ ++..+++.+|+|+|++||||||+++.|+..++. ..+.++++|.+++.++.... ...+.
T Consensus 11 ~~~~l~~i-----sl~i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~~~~~~~~~i~~v~~d~~~~~l~~~~~~~~~~~~ 85 (245)
T 2jeo_A 11 VDLGTENL-----YFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYKVLTAEQKAKALKGQ 85 (245)
T ss_dssp -----------------CCSEEEEEECSTTSSHHHHHHHHHHHHTGGGSCGGGCSEEEEEGGGGBCCCCHHHHHHHHTTC
T ss_pred Cceeecce-----eccCCCCEEEEEECCCCCCHHHHHHHHHHHhchhcccccCCceEEEeCCcCccccCHhHhhhhhccC
Confidence 45688999 999999999999999999999999999998762 23568999998887776542 22344
Q ss_pred ccCCCCccccHHHHHHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChh
Q 035513 84 YNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSD 163 (473)
Q Consensus 84 ~~f~~~~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e 163 (473)
+.|..++.++.+.+.+.+..+..+.....+.++...+.++.......+++++|+||+..+.+..+.+.+|.+|++.++.+
T Consensus 86 ~~~~~~~~~~~~~~~~~L~~l~~~~~~~~~~ls~g~~~r~~~~~~~~~~~~lilDg~~~~~~~~l~~~~~~~i~v~th~~ 165 (245)
T 2jeo_A 86 YNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVVYPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSD 165 (245)
T ss_dssp CCTTSGGGBCHHHHHHHHHHHHTTCCEEECCEETTTTEECSSCEEECCCSEEEEECTTTTTSHHHHTTCSEEEEEECCHH
T ss_pred CCCCCcccccHHHHHHHHHHHHCCCCeecccccccccCccCceEEecCCCEEEEeCccccccHHHHHhcCeEEEEECCHH
Confidence 56777888888888888888877777777888888877765433355688999999988877888888899999999999
Q ss_pred HHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecccc
Q 035513 164 VRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 164 ~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~ 234 (473)
.++.|+..|+. .+|.+.+++..+|..+..+.++.++.|.++.||+||++..+|...++.+.+.+...+..
T Consensus 166 ~~~~r~~~r~~-~~G~~~e~~~~~~~~~~~~~~~~~i~p~~~~aD~vi~~~~dn~~~~~~l~~~i~~~~~~ 235 (245)
T 2jeo_A 166 VRLSRRVLRDV-RRGRDLEQILTQYTTFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDILNG 235 (245)
T ss_dssp HHHHHHHHHHT-C---CHHHHHHHHHHTHHHHHHHHTGGGGGGCSEEEESSTTCHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHH-HcCCCHHHHHHHHHHhhhHhHHHhCCcchhcceEEEcCCCCccHHHHHHHHHHHHHHhc
Confidence 99999999876 66788999999999888889999999999999999976555666777777776655543
No 13
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=99.85 E-value=2.2e-21 Score=189.15 Aligned_cols=184 Identities=20% Similarity=0.232 Sum_probs=139.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCC-CCHHHH-----hhcc--CccCCCCccccHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHS-LTDEKL-----QNLH--DYNFDHPDAFDTELLLS 99 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~-~~~~~~-----~~~~--~~~f~~~~~~d~~~l~~ 99 (473)
+++.+|+|+|++||||||+|+.|++.++. ..+.++++|+||+. ...... ...+ .+.+-.++.++.+.+.+
T Consensus 3 ~~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~r~~~~~~~~~~~~~~~~g~~~~~~fg~~~~d~~~l~~ 82 (290)
T 1a7j_A 3 KKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYAAGDATFSHFSYEANELKELER 82 (290)
T ss_dssp TTSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGBSCCHHHHHHHHHHHHHHTCTTCSTTSGGGBCHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhhcCCHHHhhhhhhhhhhccCcCcCCCChhhhcHHHHHH
Confidence 35678999999999999999999998752 33799999999973 332211 1222 33344488999999999
Q ss_pred HHHHhhcCCceecccccc-----ccccccccc----ccc-CCCcEEEEeccccc---CChhhhhccCeEEEEecChhHHH
Q 035513 100 DMEKLKHGQAVSIPDYDF-----KSHKRKQQS----RLI-NPSDVFILEGILVL---HDPRVRDLMSMKIFVDTDSDVRL 166 (473)
Q Consensus 100 ~l~~l~~g~~i~~p~~~~-----~~~~~~~~~----~~~-~~~~viIlEG~~~l---~~~~~~~~~Dl~I~L~~~~e~~~ 166 (473)
.+..+..++.+..|.|++ ..+.+.... ... .+.+++|+||++++ .+..+.+.+|++|||++|.++++
T Consensus 83 ~l~~l~~~~~i~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~vvIvEG~~~~~~~~~~~v~~~~D~~IfV~a~~~~rl 162 (290)
T 1a7j_A 83 VFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDFDSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEW 162 (290)
T ss_dssp HHHHHHHHSCCEECCCC------CCSSCCTTSCCCCEECCSSCSEEEEEESCTTCBCSSCBCGGGCSEEEEEEECHHHHH
T ss_pred HHHHHHcCCcccceeeccccccccccCCCCCccccccccCCCCCEEEEEecccccccchHhHHHhCCEEEEEECCHHHHH
Confidence 999998888888888844 222222111 122 35789999999987 45567788999999999999999
Q ss_pred HHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccE------ecccC
Q 035513 167 SRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADI------IIPRG 214 (473)
Q Consensus 167 ~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~------vI~~~ 214 (473)
+|+++|+...+|.+.+++...+..+ .+.|..|+.|+...||+ +|+|+
T Consensus 163 ~Rrl~Rd~~~RG~s~e~v~~~i~~r-~~~~~r~i~p~~~~AD~~~~~~~vIDns 215 (290)
T 1a7j_A 163 IQKIHRDRATRGYTTEAVTDVILRR-MHAYVHCIVPQFSQTDINFQRVPVVDTS 215 (290)
T ss_dssp HHHHHHTSSSCCSCCCCHHHHHHHH-HHHHHHHTGGGGGTCSEEEEEEESSCCS
T ss_pred HHHhhhhhhhcCCChHHHHHHHHHh-CccHHHhhhhhhccCCEeeccCceecCC
Confidence 9999999888888888888888888 78999999999999999 78776
No 14
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=99.83 E-value=5.5e-21 Score=188.27 Aligned_cols=186 Identities=25% Similarity=0.417 Sum_probs=143.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--C--CCEEEEecCCCCCCCCHHHHhhccC-ccCCCCccccHHHHHHHHHHh
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--D--QRVVLVNQDSFYHSLTDEKLQNLHD-YNFDHPDAFDTELLLSDMEKL 104 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~--~~~~~is~D~~~~~~~~~~~~~~~~-~~f~~~~~~d~~~l~~~l~~l 104 (473)
.++.+|+|+|++||||||+++.|+..++ . -.+.++++|+++. ....+...+- -.|..+..++...+.+.+..+
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~i~vi~~d~~~~--~~~~~~~~~~vq~~~~~~~~~~~~~~~~~~~l 155 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLH--PNQVLKERGLMKKKGFPESYDMHRLVKFVSDL 155 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGGGGBC--CHHHHHHHTCTTCTTSGGGBCHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCeEEEEecCCccC--cHHHHHhCCEeecCCCCCCccHHHHHHHHHHH
Confidence 6789999999999999999999999875 1 2378899999884 2222222221 225557788888888888888
Q ss_pred hcCCc-eeccccccccccccccc-cccCCCcEEEEecccccCCh----------hhhhccCeEEEEecChhHHHHHhhhc
Q 035513 105 KHGQA-VSIPDYDFKSHKRKQQS-RLINPSDVFILEGILVLHDP----------RVRDLMSMKIFVDTDSDVRLSRRIQR 172 (473)
Q Consensus 105 ~~g~~-i~~p~~~~~~~~~~~~~-~~~~~~~viIlEG~~~l~~~----------~~~~~~Dl~I~L~~~~e~~~~R~~~R 172 (473)
..+.. +.+|.|++..+.++... ....+.+++|+||++++... .+.+.+|.+|||++|.+++++|+++|
T Consensus 156 ~~~~~~i~~P~~~~~~~~~~~~~~~~~~~~~ivIlEG~~l~~~~~~~~~~~~~~~~~~~~D~~i~V~~~~~~~~~R~~~R 235 (308)
T 1sq5_A 156 KSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEGLNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINR 235 (308)
T ss_dssp TTTCSCEEECCEETTTTEECTTCCEEEC-CCEEEEECTTTTCCGGGCTTSCCSSCGGGGCSEEEEEECCHHHHHHHHHHH
T ss_pred hCCCCceecccccccccCcccccceecCCCCEEEECchhhCCCccccccccchHHHHHhCCEEEEEECCHHHHHHHHHHH
Confidence 88887 99999999998776532 22356789999999998762 67888999999999999999999998
Q ss_pred cccc---------------cCCChHH----HHHHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 173 DTVE---------------RGRDIED----VLDQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 173 ~~~~---------------~~~~~~~----~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
+... ++.+.++ +..||.....|.+..|+.|.+..||+||+++++.
T Consensus 236 ~~~~r~~~~r~~~~~~~~~~g~s~e~a~~~i~~q~~~~~~~~~~~~i~~~~~~AD~vI~n~~~~ 299 (308)
T 1sq5_A 236 FLKFREGAFTDPDSYFHNYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANH 299 (308)
T ss_dssp HHHHHHTTTTCTTSTTHHHHTSCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECGGG
T ss_pred HHHHHHhhccCCchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHHcccccccCcEEEEeCCCC
Confidence 6321 2444444 4456776677889999999999999999987543
No 15
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=99.79 E-value=1.5e-18 Score=170.72 Aligned_cols=187 Identities=25% Similarity=0.400 Sum_probs=145.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEecCCCCCCCCHHHHhhccCcc-CCCCccccHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD----QRVVLVNQDSFYHSLTDEKLQNLHDYN-FDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~----~~~~~is~D~~~~~~~~~~~~~~~~~~-f~~~~~~d~~~l~~~l~~ 103 (473)
.+++.+|+|.|++||||||+++.|+..+.. ..+.++++|.++.. ....+...... ++.+++++.+.+.+.+..
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~~~v~~v~qd~~~~~--~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~ 164 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYP--NAELQRRNLMHRKGFPESYNRRALMRFVTS 164 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTCCCEEEEEGGGGBCC--HHHHHHTTCTTCTTSGGGBCHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhccccCCCCeEEEEecCccCCc--ccHHHHHHHHHhcCCChHHHHHHHHHHHHH
Confidence 577899999999999999999999998753 35889999998843 32233332221 456788899999999998
Q ss_pred hhcCCc-eeccccccccccccccccc-cCCCcEEEEecccccCC---hhhhhccCeEEEEecChhHHHHHhhhccc----
Q 035513 104 LKHGQA-VSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHD---PRVRDLMSMKIFVDTDSDVRLSRRIQRDT---- 174 (473)
Q Consensus 104 l~~g~~-i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~---~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~---- 174 (473)
+..+.. ...|.|++..++++..+.. ..+++++|+||++.+.+ ..+.+.+|.+|||+++.+++.+|+++|..
T Consensus 165 l~~~~~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~~rd 244 (312)
T 3aez_A 165 VKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRT 244 (312)
T ss_dssp HHTTCSCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSSCCGGGGCSEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred hCCCcccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcchHHHHHhcCcEEEEECCHHHHHHHHHHHHHHHHh
Confidence 886654 7788999999998865443 56789999999999864 56788999999999999999999988732
Q ss_pred -cc----------cCCChHHHH----HHHHhhcccchhhhcCCccccccEecccCCCc
Q 035513 175 -VE----------RGRDIEDVL----DQYARFVKPSFEEFILPSKKYADIIIPRGGDN 217 (473)
Q Consensus 175 -~~----------~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~ 217 (473)
.. .+.+.++.. .+|.....|++..|+.|.+..||+||+++.++
T Consensus 245 ~~~r~~~~~~~~~~g~s~e~a~~~v~~~~~~~~~p~~~~~i~p~~~~ADlii~~~~~~ 302 (312)
T 3aez_A 245 TAFADPESHFHHYAAFSDSQAVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADH 302 (312)
T ss_dssp TGGGSTTSTTGGGTTCCHHHHHHHHHHHHHHTHHHHHHHTTGGGGGGCSEEEEECTTS
T ss_pred ccccCcchhhhcccCCCHHHHHHHHHHHHHhccHHHHHHhccCCCCCCeEEEecCCCC
Confidence 22 144445443 56777778999999999999999999987544
No 16
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=99.79 E-value=1e-18 Score=162.07 Aligned_cols=181 Identities=20% Similarity=0.241 Sum_probs=143.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHhhccCcc-CCCCccccHHHHHHHHHHhh
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEKLQNLHDYN-FDHPDAFDTELLLSDMEKLK 105 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~~~~~~~~~-f~~~~~~d~~~l~~~l~~l~ 105 (473)
.+++.+|+|.|++||||||+++.|+..++. .....++.|+++. ........+.+. .+.+..++...+.+.+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~g~~~g~v~~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~ 96 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHL--DNRLLEPRGLLPRKGAPETFDFEGFQRLCHALK 96 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHTTCCEEEEESGGGBC--CHHHHGGGTCGGGTTSGGGBCHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCceEEEecCCCcC--CHHHHHHhcccccCCCCchhhHHHHHHHHHHHh
Confidence 456789999999999999999999998863 2478899999873 333333333222 34577889888889999999
Q ss_pred cCCceeccccccccccccccccccCCC-cEEEEecccccCCh----hhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 106 HGQAVSIPDYDFKSHKRKQQSRLINPS-DVFILEGILVLHDP----RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~~~~~~~~-~viIlEG~~~l~~~----~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
.++.+..|.|++............... .++++||.+.+.+. .+.+.+|.+||++++.+++++|+.+|+ ..++.+
T Consensus 97 ~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~~~~~R~~~R~-~~~g~t 175 (208)
T 3c8u_A 97 HQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLN 175 (208)
T ss_dssp HCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHHHHHHHHHHHH-HHTTCC
T ss_pred cCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHHHHHHHHHHHH-HhcCCC
Confidence 999999999998888766554444444 89999999886643 346788999999999999999999995 456788
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEeccc
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPR 213 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~ 213 (473)
.+.+.++|.....+++ .|+.|++..||+||+.
T Consensus 176 ~~~~~~~~~~~~~~~~-~~i~~~~~~aD~vi~~ 207 (208)
T 3c8u_A 176 HDAAVARAQGNDLANA-RAIEAARLPADLTWPQ 207 (208)
T ss_dssp HHHHHHHHHTHHHHHH-HHHHTTBCCCSEEEC-
T ss_pred HHHHHHHHHhccHHHH-HHHHhCCCCCCEEeeC
Confidence 9999999987677766 7899999999999974
No 17
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=99.75 E-value=2.5e-18 Score=169.58 Aligned_cols=149 Identities=18% Similarity=0.239 Sum_probs=121.7
Q ss_pred EEEEecCCCCCCCCHHHHhhcc-----CccCCCCccccHHHHHHHHHHhhcC----------------------------
Q 035513 61 VVLVNQDSFYHSLTDEKLQNLH-----DYNFDHPDAFDTELLLSDMEKLKHG---------------------------- 107 (473)
Q Consensus 61 ~~~is~D~~~~~~~~~~~~~~~-----~~~f~~~~~~d~~~l~~~l~~l~~g---------------------------- 107 (473)
+.++++|+|| ++...+...+ ...++.|++||...+.+.+..|+++
T Consensus 156 v~vi~mDgFh--~~~~~L~~~~d~~~~~~rrG~P~tfD~~~l~~~l~~L~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 233 (359)
T 2ga8_A 156 AQIVPMDGFH--LSRRCLDLFKDPQTAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQT 233 (359)
T ss_dssp EEEEEGGGGB--CCHHHHTTSSSTHHHHTTTTSGGGBCHHHHHHHHHHHHHHHTSCCC-------CCCHHHHHHTCEETT
T ss_pred EEEEecCcCC--CCHHHHhhccCcchhhccCCCCccccHHHHHHHHHHHHcCCccccccccccccccccccccccccccc
Confidence 5688999999 4555443332 4567889999999999999988776
Q ss_pred -CceeccccccccccccccccccCC-CcEEEEecccccCCh----hhhhccC-----eEEEEecChhHHHHHhhhccccc
Q 035513 108 -QAVSIPDYDFKSHKRKQQSRLINP-SDVFILEGILVLHDP----RVRDLMS-----MKIFVDTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 108 -~~i~~p~~~~~~~~~~~~~~~~~~-~~viIlEG~~~l~~~----~~~~~~D-----l~I~L~~~~e~~~~R~~~R~~~~ 176 (473)
..+..|.|++..+++........+ .+++|+||++++++. .+.+.+| ++||++++.+++++|+++|+. .
T Consensus 234 ~~~v~~P~yD~~~~d~~~~~~~v~~~~~iVIvEGi~LL~e~~~w~~l~~l~D~~~~~~~i~Vdad~ev~~~Rli~R~~-~ 312 (359)
T 2ga8_A 234 IPDIFVPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDIDYEATEERVAKRHL-Q 312 (359)
T ss_dssp CCCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSHHHHHHHHHHHTTTCEEEEEEECCHHHHHHHHHHHHH-H
T ss_pred CceEeeccccCccCCCCCCceEecCCCCEEEEEeehhhccccchhhhhhccccccceEEEEEECCHHHHHHHHHHhhh-c
Confidence 568899999999998866555444 689999999888873 3456888 999999999999999999975 4
Q ss_pred cCC--ChHHHHHHHHhhcccchhhhcCCccccccEeccc
Q 035513 177 RGR--DIEDVLDQYARFVKPSFEEFILPSKKYADIIIPR 213 (473)
Q Consensus 177 ~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~ 213 (473)
+|. +.++...++.....|+. .+|.|.+..||+|+..
T Consensus 313 ~Gl~~s~eea~~r~~~~d~pN~-~~I~~~~~~ad~i~~~ 350 (359)
T 2ga8_A 313 SGLVTTIAEGREKFRSNDLLNG-RDIDNHLIKVDNIVHI 350 (359)
T ss_dssp TTSCSSHHHHHHHHHHCTTTSS-HHHHHTBCCCTTEEEE
T ss_pred cCCCCCHHHHHHHHHhcCchhh-HhHhhcCCCCCEEEEe
Confidence 566 88999999999888877 7999999999998863
No 18
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=99.75 E-value=1.4e-18 Score=169.13 Aligned_cols=183 Identities=23% Similarity=0.331 Sum_probs=131.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC----CEEEE-ecCCCCCCCCHHHHhhcc--------CccCCCCccccH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ----RVVLV-NQDSFYHSLTDEKLQNLH--------DYNFDHPDAFDT 94 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~----~~~~i-s~D~~~~~~~~~~~~~~~--------~~~f~~~~~~d~ 94 (473)
..+++.+|+|+|++||||||+++.|++.++.. ....+ ++|+||.. ...+..+. .-.++.|+++|.
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~~~g~~~~~~~iv~~D~f~~~--~~~~~~l~~~~~~~~l~~~~g~p~a~d~ 104 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLT--HEDQLKLNEQFKNNKLLQGRGLPGTHDM 104 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHHHHHGGGSCEEEEEGGGGBCC--HHHHHHHHHHTTTCGGGSSSCSTTSBCH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhhhcCCCCceEEEeccccccCC--hHHHHHHhccccccchhhhccCcchhHH
Confidence 34578999999999999999999999988632 24445 99999964 33322211 112456999999
Q ss_pred HHHHHHHHHhhcC------Cceecccccccc----cccccc--ccccCCCcEEEEecccccCChh---------------
Q 035513 95 ELLLSDMEKLKHG------QAVSIPDYDFKS----HKRKQQ--SRLINPSDVFILEGILVLHDPR--------------- 147 (473)
Q Consensus 95 ~~l~~~l~~l~~g------~~i~~p~~~~~~----~~~~~~--~~~~~~~~viIlEG~~~l~~~~--------------- 147 (473)
+.+.+.+..+..+ +.+..|.|++.. ++++.. ...+ +++++|+||++.+.++.
T Consensus 105 ~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~-~~~IlIlEG~~~~ld~~~~~~~~~~~~~~~l~ 183 (290)
T 1odf_A 105 KLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL-PVDIFILEGWFLGFNPILQGIENNDLLTGDMV 183 (290)
T ss_dssp HHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES-SCSEEEEEESSTTCCCCCSCTTTCSSSCTTHH
T ss_pred HHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc-CCCEEEEeCccccCCccchhhhhcccchhhHH
Confidence 9999999999998 678899999888 776643 2445 79999999998876653
Q ss_pred ------------hhhccCeE---EEEecChhHHHHH-hhhc--c-cccc--CCChHHHHHHHHhhcccchhhhcCCcc--
Q 035513 148 ------------VRDLMSMK---IFVDTDSDVRLSR-RIQR--D-TVER--GRDIEDVLDQYARFVKPSFEEFILPSK-- 204 (473)
Q Consensus 148 ------------~~~~~Dl~---I~L~~~~e~~~~R-~~~R--~-~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~-- 204 (473)
+++.+|+. |||+++.+.++.| +++| + ..++ |.+.+++ .+|....+|.|+.|+.+..
T Consensus 184 ~~n~~l~~y~~~l~~~~D~~d~~I~vd~~~~~~i~rWRi~re~~l~~~r~~g~s~e~v-~~~~~~~~p~y~~~~~~~~~~ 262 (290)
T 1odf_A 184 DVNAKLFFYSDLLWRNPEIKSLGIVFTTDNINNVYGWRLQQEHELISKVGKGMTDEQV-HAFVDRYMPSYKLYLNDFVRS 262 (290)
T ss_dssp HHHHHHHHHHHHTTTCTTCCEEEEEEEESCTTHHHHHHHHHHHHHHHHHSCSCCHHHH-HHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhcceEEEECCCHHHHHHHHHHHHHHHHHhccCCCCHHHH-HHHHHHhcchHHHHhHHHHHh
Confidence 23345555 9999976666655 6666 3 2234 7787775 7888888888888765532
Q ss_pred ----ccccEecccC
Q 035513 205 ----KYADIIIPRG 214 (473)
Q Consensus 205 ----~~ad~vI~~~ 214 (473)
+.||+|+..+
T Consensus 263 ~~~~~~adlvl~~~ 276 (290)
T 1odf_A 263 ESLGSIATLTLGID 276 (290)
T ss_dssp TCSSSSEEEEEEEC
T ss_pred ccCCCCCCEEEEEC
Confidence 3688887644
No 19
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=99.71 E-value=5e-18 Score=156.58 Aligned_cols=176 Identities=20% Similarity=0.356 Sum_probs=106.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCCCCCCHHHHhhccCcc-C-CCCccccHHHHHHHH-H
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFYHSLTDEKLQNLHDYN-F-DHPDAFDTELLLSDM-E 102 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~~~~~~~~~~~~~~~~-f-~~~~~~d~~~l~~~l-~ 102 (473)
...++.+|+|+|++||||||+++.|+..+.. ..+.+++.|.+++.. ......+... . ..++.+|++.+.+.+ .
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~--~~~~~~~~~~~~~~~~~~~d~~~l~~~v~~ 95 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVER--AKRYHTGNEEWFEYYYLQWDVEWLTHQLFR 95 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCH--HHHSSSSSCHHHHHHHTSSCHHHHHHHTGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCH--HHHHhcCCCCccCCCccccCHHHHHHHHHH
Confidence 3566799999999999999999999988742 236677889888532 1111111000 0 002567888887654 6
Q ss_pred HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 103 KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 103 ~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.+..++.+.+|.|++...............+++|+||++++ .+.+.+.+|.+||+++|.+++++|+.+|+ +
T Consensus 96 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vIveg~~l~-~~~~~~~~d~~i~v~~~~~~~~~R~~~R~--------~ 166 (201)
T 1rz3_A 96 QLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVFLQ-RKEWRPFFDFVVYLDCPREIRFARENDQV--------K 166 (201)
T ss_dssp GTTTCSEEEEEEEETTTTEEEEEEEECTTCSEEEEEETTTT-STTTGGGCSEEEEECCC---------------------
T ss_pred HHhcCCccccCceeccCCCCCCceEEeCCCcEEEEechhhc-cHHHHhhcCEEEEEeCCHHHHHHHHhcCC--------H
Confidence 67777788888888774432222222345789999999876 45677889999999999999999999996 2
Q ss_pred HHHHHHHhhcccchhhhcCCc--cccccEecccC
Q 035513 183 DVLDQYARFVKPSFEEFILPS--KKYADIIIPRG 214 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~--~~~ad~vI~~~ 214 (473)
+....|.....+.++.|+.+. ...||+||+|+
T Consensus 167 ~~~~~~~~~~~~~~~~y~~~~~~~~~AD~vI~N~ 200 (201)
T 1rz3_A 167 QNIQKFINRYWKAEDYYLETEEPIKRADVVFDMT 200 (201)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHCHHHHCSEEEC--
T ss_pred HHHHHHHhheeHHHHHHhCCCCcHhhCcEEecCC
Confidence 333444333445555554443 57899999876
No 20
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=99.66 E-value=6.9e-18 Score=155.49 Aligned_cols=179 Identities=21% Similarity=0.212 Sum_probs=123.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCC-------HHHHhhccCccCCCCccccHHHHHHHHH-
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLT-------DEKLQNLHDYNFDHPDAFDTELLLSDME- 102 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~-------~~~~~~~~~~~f~~~~~~d~~~l~~~l~- 102 (473)
.+.-|||+|.+||||||+++.|++ ++ +.++++|.+.+.+. ..-.+.++...|...+..|+..|.+.+-
T Consensus 8 ~~~~iglTGgigsGKStv~~~l~~-~g---~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~~~~~dg~ldR~~L~~~vF~ 83 (210)
T 4i1u_A 8 HMYAIGLTGGIGSGKTTVADLFAA-RG---ASLVDTDLIAHRITAPAGLAMPAIEQTFGPAFVAADGSLDRARMRALIFS 83 (210)
T ss_dssp SCCEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHHTSTTCTTHHHHHHHHCGGGBCTTSSBCHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHH-CC---CcEEECcHHHHHHhcCCcHHHHHHHHHhChhhcCCCCCCcHHHHHHHHhC
Confidence 457899999999999999999988 66 99999998554322 1223555665666667788887776552
Q ss_pred ---HhhcCCceeccccccccccccccccccCCCcEEEEecccccCC-hhhhhccCeEEEEecChhHHHHHhhhccccccC
Q 035513 103 ---KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD-PRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERG 178 (473)
Q Consensus 103 ---~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~-~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~ 178 (473)
.+..-+.+.+|.+.......+.. .+..++++|.+. +++ ..+...+|.+|+|++|++++++|+++|+ +
T Consensus 84 d~~~~~~L~~i~HP~I~~~~~~~~~~----~~~~~vv~d~pL-L~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~Rd----g 154 (210)
T 4i1u_A 84 DEDARRRLEAITHPLIRAETEREARD----AQGPYVIFVVPL-LVESRNWKARCDRVLVVDCPVDTQIARVMQRN----G 154 (210)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHT----CCSSSEEEECTT-CTTCHHHHHHCSEEEEEECCHHHHHHHHHHHH----C
T ss_pred CHHHHHHHHHHhhHHHHHHHHHHHHh----cCCCEEEEEEec-ccccCCccccCCeEEEEECCHHHHHHHHHhcC----C
Confidence 23333456667665444433322 245678999654 556 8888899999999999999999999997 3
Q ss_pred CChHHHHHHHHhhcccchhhhcCCccccccEecccC-CCchhhhhhhhhee
Q 035513 179 RDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHI 228 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I 228 (473)
.+.++....+..+. +.. ...+.||+||+|+ ++.++..+++.+.+
T Consensus 155 ~s~eea~~ri~~Q~-~~e-----ek~~~AD~VIdN~~gsle~l~~qV~~l~ 199 (210)
T 4i1u_A 155 FTREQVEAIIARQA-TRE-----ARLAAADDVIVNDAATPDALAVQVDALH 199 (210)
T ss_dssp CCHHHHHHHHHHSC-CHH-----HHHHTCSEEEECSSCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHcC-ChH-----HHHHhCCEEEECCCCCHHHHHHHHHHHH
Confidence 45666665554433 222 1257899999988 66655444444433
No 21
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=99.65 E-value=2e-16 Score=146.31 Aligned_cols=185 Identities=15% Similarity=0.234 Sum_probs=111.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhcc--CccCCCCccccHHHHHHHHHHh
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLH--DYNFDHPDAFDTELLLSDMEKL 104 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~--~~~f~~~~~~d~~~l~~~l~~l 104 (473)
...+++.+|+|+|++||||||+++.|++.++ ++.++++|++++.- ....... ...++.++.++...+.+.+..+
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~--~~~~i~~D~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~ 91 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP--NCSVISQDDFFKPE--SEIETDKNGFLQYDVLEALNMEKMMSAISCW 91 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST--TEEEEEGGGGBCCG--GGSCBCTTSCBCCSSGGGBCHHHHHHHHHHH
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC--CcEEEeCCccccCH--hHhhccccCCChhHHHHHhHHHHHHHHHHHH
Confidence 3456678999999999999999999998873 39999999988532 1111000 0112334567777776666554
Q ss_pred hcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChHHH
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDV 184 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~ 184 (473)
... ...|....... ...+.+++++||++.+..+.+.+.+|.++|++++.+++.+|+..|.. ........
T Consensus 92 l~~--~~~~~~~~~~~-------~~~~~~~vi~eg~~~~~~~~~~~~~d~~i~l~~~~~~~~~R~~~R~~-~~e~~~~~- 160 (207)
T 2qt1_A 92 MES--ARHSVVSTDQE-------SAEEIPILIIEGFLLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVY-QPPDSPGY- 160 (207)
T ss_dssp HHH--HTTSSCCC------------CCCCEEEEECTTCTTCGGGTTTCSEEEEEECCHHHHHHHHHHSCC-SSCCCTTH-
T ss_pred HhC--CCCCCcCCCee-------ecCCCCEEEEeehHHcCcHHHHHhcCeeEEEECCHHHHHHHHHHcCC-CccchHHH-
Confidence 431 11222211111 12456799999987765556778889999999999999999988852 22211111
Q ss_pred HHHHHhhcccchhhhcCCccccccEe--cccCCCchhhhhhhhheee
Q 035513 185 LDQYARFVKPSFEEFILPSKKYADII--IPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 185 ~~~~~~~~~~~~~~~i~~~~~~ad~v--I~~~~~~~~~i~~i~~~I~ 229 (473)
|....++.|..+...+...+|.+ |+++.+.++..+++.+.+.
T Consensus 161 ---~~~~~~~~~~~~~~~~~~~~~~v~~Id~~~~~eev~~~I~~~l~ 204 (207)
T 2qt1_A 161 ---FDGHVWPMYLKYRQEMQDITWEVVYLDGTKSEEDLFLQVYEDLI 204 (207)
T ss_dssp ---HHHTHHHHHHHHHHHGGGCSSCCEEEETTSCHHHHHHHHHHHHT
T ss_pred ---HHHHHhHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHH
Confidence 22122222332322234456655 7777555555566555544
No 22
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=99.64 E-value=4.7e-17 Score=148.74 Aligned_cols=165 Identities=18% Similarity=0.225 Sum_probs=109.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH----HHhhccCccCCCCccccHHHHHHHH----H
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE----KLQNLHDYNFDHPDAFDTELLLSDM----E 102 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~----~~~~~~~~~f~~~~~~d~~~l~~~l----~ 102 (473)
...+|+|+|++||||||+++.|++.++ +.++++|++++.+... -...++...|+ ++.+|+..+.+.+ .
T Consensus 11 ~~~iIgltG~~GSGKSTva~~L~~~lg---~~vid~D~~~~~~~~~~~~~i~~~fG~~~~~-~g~ldr~~L~~~vF~~~~ 86 (192)
T 2grj_A 11 HHMVIGVTGKIGTGKSTVCEILKNKYG---AHVVNVDRIGHEVLEEVKEKLVELFGGSVLE-DGKVNRKKLAGIVFESRE 86 (192)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHTHHHHHHHHCGGGBS-SSSBCHHHHHHHHTTCHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHHhcC---CEEEECcHHHHHHHHHHHHHHHHHhChhhcC-CCCcCHHHHHHHHhCCHH
Confidence 357999999999999999999999887 9999999998765443 12345555566 6778877665532 1
Q ss_pred HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 103 KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 103 ~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.+...+.+.+|.+......++.. ...++++|++.++ +..+...+|.+|||++|++++++|++.
T Consensus 87 ~~~~l~~i~hP~i~~~~~~~~~~-----~~~~vv~d~pll~-e~~~~~~~d~vi~v~a~~e~r~~Rli~----------- 149 (192)
T 2grj_A 87 NLKKLELLVHPLMKKRVQEIINK-----TSGLIVIEAALLK-RMGLDQLCDHVITVVASRETILKRNRE----------- 149 (192)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHT-----CCEEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHCSS-----------
T ss_pred HHHHHHhhhCHHHHHHHHHHHHH-----cCCEEEEEEecee-ecChHHhCCEEEEEECCHHHHHHHHHH-----------
Confidence 12222334556554433332211 1468999976654 456778899999999999999999821
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhe
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQH 227 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~ 227 (473)
.|+.. ++.+..+.||++|+|+++.++..+++.+.
T Consensus 150 ---~q~~~--------~~~~~~~~AD~vI~n~~~~~~l~~~v~~~ 183 (192)
T 2grj_A 150 ---ADRRL--------KFQEDIVPQGIVVANNSTLEDLEKKVEEV 183 (192)
T ss_dssp ---HHHHH--------TTCTTCCCCSEEEECSSCHHHHHHHHHHH
T ss_pred ---hcCCc--------hhhhHHhcCCEEEECCCCHHHHHHHHHHH
Confidence 12222 11223678999999886555444444443
No 23
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=99.58 E-value=8.7e-16 Score=149.03 Aligned_cols=186 Identities=11% Similarity=0.173 Sum_probs=112.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCH-------HHHhhccCccCCCCccccHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD-------EKLQNLHDYNFDHPDAFDTELLLSD 100 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~-------~~~~~~~~~~f~~~~~~d~~~l~~~ 100 (473)
..+++++|+|+|++||||||+|+.|+ .++ +.++++|++++.... .-.+..+...+...+.+|...+...
T Consensus 71 ~~~~~~iI~I~G~~GSGKSTva~~La-~lg---~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~i~~~~g~idr~~l~~~ 146 (281)
T 2f6r_A 71 LPSGLYVLGLTGISGSGKSSVAQRLK-NLG---AYIIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGTINRKVLGSR 146 (281)
T ss_dssp SCTTCEEEEEEECTTSCHHHHHHHHH-HHT---CEEEEHHHHHHHHTSTTSTTHHHHHHHHCGGGBCTTSSBCHHHHHHH
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHH-HCC---CcEEehhHHHHHHhcCChHHHHHHHHHcCccccCCCCCcCHHHHHHH
Confidence 34568899999999999999999999 465 899999987432111 0112222222322234555443211
Q ss_pred H----HHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccc
Q 035513 101 M----EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 101 l----~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~ 176 (473)
+ ..+...+.+..|.+......++.... ..+..++|+||...+ +..+...+|.+|||++|++++++|+.+|+
T Consensus 147 vf~~~~~~~~l~~i~~P~i~~~~~~~~~~~~-~~~~~~vIveg~~l~-~~~~~~~~d~vI~l~a~~ev~~~Rl~~R~--- 221 (281)
T 2f6r_A 147 VFGNKKQMKILTDIVWPVIAKLAREEMDVAV-AKGKTLCVIDAAMLL-EAGWQSMVHEVWTVVIPETEAVRRIVERD--- 221 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHHHHHHHHHH-HTTCCEEEEECTTTT-TTTGGGGCSEEEEEECCHHHHHHHHHHHH---
T ss_pred HhCCHHHHHHhhcccChHHHHHHHHHHHHHh-ccCCCEEEEEechhh-ccchHHhCCEEEEEcCCHHHHHHHHHHcC---
Confidence 1 11111123344544333333332111 233578999998755 44566778999999999999999999985
Q ss_pred cCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 177 RGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+.+.+.....+... .+.. .+ ...||++|+++.+.++..+++.+.+.
T Consensus 222 -g~s~e~~~~ri~~q-~~~~-~~----~~~AD~vIdn~~s~eel~~~I~~~l~ 267 (281)
T 2f6r_A 222 -GLSEAAAQSRLQSQ-MSGQ-QL----VEQSNVVLSTLWESHVTQSQVEKAWN 267 (281)
T ss_dssp -CCCHHHHHHHHHTS-CCHH-HH----HHTCSEEEECSSCHHHHHHHHHHHHH
T ss_pred -CCCHHHHHHHHHHc-CChH-hh----HhhCCEEEECCCCHHHHHHHHHHHHH
Confidence 34566666666554 2221 22 24689999988655555555554444
No 24
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=99.52 E-value=1.2e-14 Score=135.28 Aligned_cols=182 Identities=18% Similarity=0.196 Sum_probs=105.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH-------HHhhccCccCCCCccccHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE-------KLQNLHDYNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~-------~~~~~~~~~f~~~~~~d~~~l~~~l~~ 103 (473)
++++|+|+|++||||||+++.|++ ++ +.+++.|++++..... -....+...|...+.++...+...+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg---~~~id~D~~~~~~~~~~~~~~~~i~~~~g~~~~~~~~~~~~~~l~~~~f~ 78 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LG---INVIDADIIARQVVEPGAPALHAIADHFGANMIAADGTLQRRALRERIFA 78 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TT---CEEEEHHHHHHHTTSTTCTHHHHHHHHHCGGGBCTTSCBCHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cC---CEEEEccHHHHHHhcCChHHHHHHHHHhHHHHcCCCCCCCHHHHHHHHhC
Confidence 568999999999999999999988 65 8999999876543211 122333333433334554443322210
Q ss_pred ----hhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCC
Q 035513 104 ----LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGR 179 (473)
Q Consensus 104 ----l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~ 179 (473)
+...+.+..|.+.......+.. . ...++++|+..... ..+...+|.+|||++|++++.+|+.+|+. .
T Consensus 79 ~~~~~~~l~~~~~p~v~~~~~~~~~~---~-~~~~vi~~~~~l~~-~~~~~~~d~vi~l~~~~e~~~~Rl~~R~~----~ 149 (218)
T 1vht_A 79 NPEEKNWLNALLHPLIQQETQHQIQQ---A-TSPYVLWVVPLLVE-NSLYKKANRVLVVDVSPETQLKRTMQRDD----V 149 (218)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHH---C-CSSEEEEECTTTTT-TTGGGGCSEEEEEECCHHHHHHHHHHHHT----C
T ss_pred CHHHHHHHHHhHCHHHHHHHHHHHHh---c-CCCEEEEEeeeeec-cCccccCCEEEEEECCHHHHHHHHHHcCC----C
Confidence 0000112223322111111110 0 23467788755433 33666789999999999999999998852 3
Q ss_pred ChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeec
Q 035513 180 DIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
+.+.+...+..+ .+.+. +...||++|+++.+.++..+.+.+.+...
T Consensus 150 ~~~~~~~~~~~~-~~~~~-----~~~~ad~vId~~~~~~~~~~~I~~~l~~~ 195 (218)
T 1vht_A 150 TREHVEQILAAQ-ATREA-----RLAVADDVIDNNGAPDAIASDVARLHAHY 195 (218)
T ss_dssp CHHHHHHHHHHS-CCHHH-----HHHHCSEEEECSSCTTSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCHHHHHHHHHHHHHHH
Confidence 444444444443 22222 13568999998865555556666555543
No 25
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=99.51 E-value=5.3e-15 Score=136.48 Aligned_cols=168 Identities=18% Similarity=0.287 Sum_probs=92.1
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH---H----HhhccCccCCCCccccHHHHHHHHH--
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE---K----LQNLHDYNFDHPDAFDTELLLSDME-- 102 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~---~----~~~~~~~~f~~~~~~d~~~l~~~l~-- 102 (473)
+.+|+|+|++||||||+++.|++ ++ +.++++|++++.+... . ....+...|...+..+...+.+.+-
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg---~~~id~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~ 77 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LG---VPLVDADVVAREVVAKDSPLLSKIVEHFGAQILTEQGELNRAALRERVFNH 77 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TT---CCEEEHHHHHHHTTCSSCHHHHHHHHHHCTTCC------CHHHHHHHHHTC
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CC---CcccchHHHHHHHccCChHHHHHHHHHhCHHHhccCccccHHHHHHHHhCC
Confidence 36899999999999999999987 55 8999999876543211 0 1222333332222333332222110
Q ss_pred --HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 103 --KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 103 --~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
.+.....+..|.+.......+.. .....+++|+.... +..+...+|.+|||++|++++.+|+..|+ +.+
T Consensus 78 ~~~~~~l~~~~~p~v~~~~~~~~~~----~~~~~vv~~~~~l~-e~~~~~~~d~vi~l~~~~e~~~~Rl~~R~----~~~ 148 (206)
T 1jjv_A 78 DEDKLWLNNLLHPAIRERMKQKLAE----QTAPYTLFVVPLLI-ENKLTALCDRILVVDVSPQTQLARSAQRD----NNN 148 (206)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT----CCSSEEEEECTTTT-TTTCGGGCSEEEEEECCHHHHHHHHC---------C
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHh----cCCCEEEEEechhh-hcCcHhhCCEEEEEECCHHHHHHHHHHcC----CCC
Confidence 00000112223332221111111 12347888986544 33466788999999999999999999885 335
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCch
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDND 218 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~ 218 (473)
.+.+...+... .+... ..+.||++|+|+++.+
T Consensus 149 ~e~~~~r~~~q-~~~~~-----~~~~ad~vIdn~~~~~ 180 (206)
T 1jjv_A 149 FEQIQRIMNSQ-VSQQE-----RLKWADDVINNDAELA 180 (206)
T ss_dssp HHHHHHHHHHS-CCHHH-----HHHHCSEEEECCSCHH
T ss_pred HHHHHHHHHhc-CChHH-----HHHhCCEEEECCCCcc
Confidence 55555555432 22221 2357999999887555
No 26
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=99.48 E-value=1.5e-14 Score=133.25 Aligned_cols=178 Identities=22% Similarity=0.278 Sum_probs=101.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCH---HH----HhhccCccCCCCccccHHHHHHHHH---
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD---EK----LQNLHDYNFDHPDAFDTELLLSDME--- 102 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~---~~----~~~~~~~~f~~~~~~d~~~l~~~l~--- 102 (473)
++|+|+|++||||||+++.|++ ++ +.++++|++++.... .. ....+...|...+..+...+.+.+.
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g---~~~i~~d~~~~~~~~~~~~~~~~i~~~~g~~~~~~~g~~~r~~l~~~~f~~~ 77 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LG---AYVLDADKLIHSFYRKGHPVYEEVVKTFGKGILDEEGNIDRKKLADIVFKDE 77 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TT---CEEEEHHHHHHGGGSSSSHHHHHHHHHHCTTTTEETTEECHHHHHHTTSSCH
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CC---CEEEEccHHHHHHhcCCHHHHHHHHHHhCHHhhCCCCcCCHHHHHHHHhCCH
Confidence 4799999999999999999999 76 999999988754321 11 1122222232223444444433210
Q ss_pred -HhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCCh
Q 035513 103 -KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 103 -~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
.+.....+..|.+.......+. ...+..++++||.... +..+...+|.+|||++|++++.+|+..| +.+.
T Consensus 78 ~~~~~l~~l~~~~v~~~~~~~~~---~~~~~~~vive~~~l~-~~~~~~~~~~~i~l~~~~e~~~~Rl~~R-----~~~~ 148 (204)
T 2if2_A 78 EKLRKLEEITHRALYKEIEKITK---NLSEDTLFILEASLLV-EKGTYKNYDKLIVVYAPYEVCKERAIKR-----GMSE 148 (204)
T ss_dssp HHHHHHHHHHHHHHTTTHHHHHH---HSCTTCCEEEECSCST-TTTCGGGSSEEEEECCCHHHHHHHHHHT-----CCCH
T ss_pred HHHHHHHHhhCHHHHHHHHHHHH---hccCCCEEEEEccccc-cCCchhhCCEEEEEECCHHHHHHHHHHc-----CCCH
Confidence 0000000111222111111110 0122268889987654 3455667899999999999999999887 2344
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+.+...+.... +.+ ++...||++|+++.+.++..+++.+.+.
T Consensus 149 ~~~~~~~~~~~-~~~-----~~~~~ad~vId~~~~~~~~~~~i~~~l~ 190 (204)
T 2if2_A 149 EDFERRWKKQM-PIE-----EKVKYADYVIDNSGSIEETYKQVKKVYE 190 (204)
T ss_dssp HHHHHHHTTSC-CHH-----HHGGGCSEECCCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCC-Chh-----HHHhcCCEEEECCCCHHHHHHHHHHHHH
Confidence 55444444432 211 2246689999887555555555555443
No 27
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=99.46 E-value=2.3e-14 Score=131.51 Aligned_cols=180 Identities=19% Similarity=0.202 Sum_probs=102.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCC-H---HHHhhccCccCCCCccccHHHHHHHHHH-
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLT-D---EKLQNLHDYNFDHPDAFDTELLLSDMEK- 103 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~-~---~~~~~~~~~~f~~~~~~d~~~l~~~l~~- 103 (473)
.+++.+|+|+|++||||||+++.|++. + +.+++.|++++... . .-...+ ...|. .+.++...+.+....
T Consensus 5 ~~~~~~I~i~G~~GsGKST~~~~La~~-g---~~~id~d~~~~~~~~~~~~~i~~~~-~~~~~-~g~i~~~~l~~~~~~~ 78 (203)
T 1uf9_A 5 AKHPIIIGITGNIGSGKSTVAALLRSW-G---YPVLDLDALAARARENKEEELKRLF-PEAVV-GGRLDRRALARLVFSD 78 (203)
T ss_dssp -CCCEEEEEEECTTSCHHHHHHHHHHT-T---CCEEEHHHHHHHHHHHTHHHHHHHC-GGGEE-TTEECHHHHHHHHTTS
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHC-C---CEEEcccHHHHHhcCChHHHHHHHH-HHHHh-CCCcCHHHHHHHHhCC
Confidence 456789999999999999999999987 4 89999999875433 1 001111 11122 234454444322100
Q ss_pred ---hhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 104 ---LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 104 ---l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
+...+.+..|.+. ...+... ...+..++++|+.... +..+...+|.+|||++|.+++.+|+.+|+. .+
T Consensus 79 ~~~~~~l~~~~~~~i~---~~~i~~~-~~~g~~~vi~d~~~l~-~~~~~~~~d~~i~l~~~~e~~~~R~~~R~~----~~ 149 (203)
T 1uf9_A 79 PERLKALEAVVHPEVR---RLLMEEL-SRLEAPLVFLEIPLLF-EKGWEGRLHGTLLVAAPLEERVRRVMARSG----LS 149 (203)
T ss_dssp HHHHHHHHHHHHHHHH---HHHHHHH-HTCCCSEEEEECTTTT-TTTCGGGSSEEEEECCCHHHHHHHHHTTTC----CT
T ss_pred HHHHHHHHHHhChHHH---HHHHHHh-hhcCCCEEEEEeccee-ccCchhhCCEEEEEECCHHHHHHHHHHcCC----CC
Confidence 0000011112221 1111111 1133578999986544 344556779999999999999999998853 23
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+.....+... .+.+ .+...+|++|+++.+.++..+.+.+.+.
T Consensus 150 ~~~~~~~i~~~-~~~~-----~~~~~ad~vId~~~~~~~~~~~i~~~~~ 192 (203)
T 1uf9_A 150 REEVLARERAQ-MPEE-----EKRKRATWVLENTGSLEDLERALKAVLA 192 (203)
T ss_dssp THHHHHHHTTS-CCHH-----HHHHHCSEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC-CChh-----HHHHhCCEEEECCCCHHHHHHHHHHHHH
Confidence 34444444332 2222 1135689999887544445555555444
No 28
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=99.45 E-value=4.5e-14 Score=129.69 Aligned_cols=176 Identities=17% Similarity=0.180 Sum_probs=90.7
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCcc-
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA- 91 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~- 91 (473)
....++++ ++.+.++.+|+|+|++||||||+++.|++.++ +.+++.|++........... .|...+.
T Consensus 11 ~~~~~~~~-----~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l~---~~~i~~d~~~~~~~g~~i~~----~~~~~~~~ 78 (199)
T 3vaa_A 11 VDLGTENL-----YFQSNAMVRIFLTGYMGAGKTTLGKAFARKLN---VPFIDLDWYIEERFHKTVGE----LFTERGEA 78 (199)
T ss_dssp ------------------CCCEEEEECCTTSCHHHHHHHHHHHHT---CCEEEHHHHHHHHHTSCHHH----HHHHHHHH
T ss_pred CCCCCCce-----eEecCCCCEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcchHHHHHHhCCcHHH----HHHhcChH
Confidence 35578888 88888888999999999999999999999997 88999988652110000000 0100000
Q ss_pred ccHHHHHHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChh---hhhccCeEEEEecChhHHHHH
Q 035513 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR---VRDLMSMKIFVDTDSDVRLSR 168 (473)
Q Consensus 92 ~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~---~~~~~Dl~I~L~~~~e~~~~R 168 (473)
+....-.+.+..+. ....+++..|........ .....+.+|||++|.+++.+|
T Consensus 79 ~~~~~e~~~l~~l~------------------------~~~~~vi~~ggg~~~~~~~~~~l~~~~~vi~L~~~~e~l~~R 134 (199)
T 3vaa_A 79 GFRELERNMLHEVA------------------------EFENVVISTGGGAPCFYDNMEFMNRTGKTVFLNVHPDVLFRR 134 (199)
T ss_dssp HHHHHHHHHHHHHT------------------------TCSSEEEECCTTGGGSTTHHHHHHHHSEEEEEECCHHHHHHH
T ss_pred HHHHHHHHHHHHHh------------------------hcCCcEEECCCcEEccHHHHHHHHcCCEEEEEECCHHHHHHH
Confidence 00000111122211 223455554433222222 223357899999999999999
Q ss_pred hh-hccccc--cCCChHH---HHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeeecc
Q 035513 169 RI-QRDTVE--RGRDIED---VLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILTKL 232 (473)
Q Consensus 169 ~~-~R~~~~--~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~~l 232 (473)
+. .|..+. .+.+.++ .+..+.....+.| .. ||++|+++. +.++.++++++.+...+
T Consensus 135 l~~~~~~Rp~~~~~~~~~~~~~i~~~~~~r~~~y-------~~-ad~~Idt~~~s~ee~~~~I~~~l~~~l 197 (199)
T 3vaa_A 135 LRIAKQQRPILQGKEDDELMDFIIQALEKRAPFY-------TQ-AQYIFNADELEDRWQIESSVQRLQELL 197 (199)
T ss_dssp HHHTGGGCGGGTTCCHHHHHHHHHHHHHHHHHHH-------TT-SSEEEECCCCSSHHHHHHHHHHHHHHT
T ss_pred HhcCCCCCCCcCCCChhhHHHHHHHHHHHHHHHH-------hh-CCEEEECCCCCHHHHHHHHHHHHHHHh
Confidence 98 342221 2333322 2222222222333 33 999999875 56677777777766544
No 29
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=99.41 E-value=1.3e-13 Score=122.86 Aligned_cols=171 Identities=14% Similarity=0.156 Sum_probs=92.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
++|+|+|++||||||+|+.| +.++ +.+++.|++++..... .+ ....+...+.+.+.... +...
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g---~~~i~~~~~~~~~~~~----~~------~~~~~~~~~~~~~~~~~-~~~~-- 64 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERG---AKVIVMSDVVRKRYSI----EA------KPGERLMDFAKRLREIY-GDGV-- 64 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTT---CEEEEHHHHHHHHHHH----HC---------CCHHHHHHHHHHHH-CTTH--
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCC---CcEEEHhHHHHHHHHh----cC------CChhHHHHHHHHHHhhC-CHHH--
Confidence 47999999999999999999 7776 8899988766321111 00 00111111111111100 0000
Q ss_pred cccccccccccccccccCCCcEEEEecccccCC-hhhhhcc---CeEEEEecChhHHHHHhhhccccccCCChHHHHHHH
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHD-PRVRDLM---SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQY 188 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~-~~~~~~~---Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~ 188 (473)
+ ...............+|+||...... ..+...+ +++|||++|++++.+|+..|+......+.+.+...+
T Consensus 65 --~----~~~~~~~l~~~~~~~vi~dg~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~~~~~~~~~~~~~r~ 138 (179)
T 3lw7_A 65 --V----ARLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLLGDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRD 138 (179)
T ss_dssp --H----HHHHHHHHCSCCCSCEEEECCCCHHHHHHHHHHHCSCEEEEEEECCHHHHHHHHHTCC----CCCHHHHHHHH
T ss_pred --H----HHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHhccCCCCcchHHHHHHHH
Confidence 0 00000000013456789998621111 1122333 489999999999999999996544445666666555
Q ss_pred HhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 189 ARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 189 ~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
....... ..++...+|++|+++++.++..+++.+.+..
T Consensus 139 ~~~~~~~----~~~~~~~ad~vId~~~~~~~~~~~i~~~l~~ 176 (179)
T 3lw7_A 139 REELKLG----IGEVIAMADYIITNDSNYEEFKRRCEEVTDR 176 (179)
T ss_dssp HHHHHHT----HHHHHHTCSEEEECCSCHHHHHHHHHHHHHH
T ss_pred HhhhccC----hHhHHHhCCEEEECCCCHHHHHHHHHHHHHH
Confidence 3211100 1123567999999886555555666555543
No 30
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=99.39 E-value=7.1e-13 Score=126.38 Aligned_cols=196 Identities=18% Similarity=0.193 Sum_probs=98.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc-
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH- 106 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~- 106 (473)
+++++.+|+|+|++||||||+++.|+++++ +.+++.|.+++.+....... ..... +......+.+.+.....
T Consensus 23 m~~~g~~I~I~G~~GsGKSTl~k~La~~Lg---~~~~d~g~i~r~~~~~~~~~--g~~~~--~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 23 MTAIAPVITVDGPSGAGKGTLCKALAESLN---WRLLDSGAIYRVLALAALHH--QVDIS--TEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp CTTTSCEEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHHHHHHHHHT--TCCSS--SSTTHHHHHHTCCEEEEE
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHHHhcC---CCcCCCCceehHhHHHHHHc--CCCcc--cHHHHHHHHHcCCEEEec
Confidence 335667999999999999999999999997 88898888773221111000 00000 00011111100000000
Q ss_pred -C--Cceeccccccccc--------------------ccc-ccccccCCCcEEEEecccccCChhhhhccCeEEEEecCh
Q 035513 107 -G--QAVSIPDYDFKSH--------------------KRK-QQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDS 162 (473)
Q Consensus 107 -g--~~i~~p~~~~~~~--------------------~~~-~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~ 162 (473)
+ ..+.+...+.... ..+ ..+..+.....+++||-..... +....|++|||++|+
T Consensus 96 ~~~~~~~~l~~~~v~~~i~~~~v~~~~s~~~~~~~vr~~l~~~~~~~a~~~~~V~~gr~~~~~--v~~~~~~~ifl~A~~ 173 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIRTETVGNTASQAAAFPRVREALLRRQRAFREAPGLIADGRDMGTI--VFPDAPVKIFLDASS 173 (252)
T ss_dssp ETTEEEEEETTEECTTGGGSHHHHHHHHHHTTSHHHHHHHHHHHHTTCCSSCEEEEESSCCCC--CSTTCSEEEEEECCH
T ss_pred CCCCceEEECCeehhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhCCCEEEEeceecee--ecCCCCEEEEEECCH
Confidence 0 0000000000000 000 1111233345578888543321 223357999999999
Q ss_pred hHHHHHhhhcccc-ccCCChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhheeeecc
Q 035513 163 DVRLSRRIQRDTV-ERGRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHILTKL 232 (473)
Q Consensus 163 e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I~~~l 232 (473)
+++.+|+.++... ..+.+.+.+...+..+........+.|..+.+| ++|+++. +.++.++.+.+.+...+
T Consensus 174 e~r~~R~~~~l~~~~~~~~~~~~~~~i~~rd~~~~~r~~~pl~~~~d~~~Idts~~~~eev~~~I~~~i~~~~ 246 (252)
T 4e22_A 174 QERAHRRMLQLQERGFNVNFERLLAEIQERDNRDRNRSVAPLVPAADALVLDSTSMSIEQVIEQALAYAQRIL 246 (252)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHC------------CCCCCTTEEEEECSSSCHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhhhccccchhccCCeEEEECcCCCHHHHHHHHHHHHHHHh
Confidence 9999998763111 123466777777777766666666777777777 8898775 45566666666665443
No 31
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=99.39 E-value=1e-13 Score=129.53 Aligned_cols=182 Identities=18% Similarity=0.220 Sum_probs=92.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCC----------------------
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHP---------------------- 89 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~---------------------- 89 (473)
+.+|+|+|++||||||+++.|++.++ +.+++.|++++......... ...+..+
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g---~~~~d~g~i~~~~~~~~~~~--g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQ---WHLLDSGAIYRVLALAALHH--HVDVASEDALVPLASHLDVRFVSTNGNLE 79 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHHHHH--TCCTTCHHHHHHHHHTCCEEEEEETTEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCcceeehhhHHHHHc--CCCccCHHHHHHHHHhCceeeeccCCCce
Confidence 46899999999999999999999987 89999998885321100000 0001000
Q ss_pred ---------ccccHHHHHHHHHHhhcCCceeccccccccccccc-cccccCCCcEEEEecccccCChhhhhccCeEEEEe
Q 035513 90 ---------DAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQ-QSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVD 159 (473)
Q Consensus 90 ---------~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~-~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~ 159 (473)
+.+..+.+.+.+..+... |.+ ...+. ..........+++||.... . .+...+|++||++
T Consensus 80 ~~l~~~~v~~~~~~~~~~~~~~~~~~~-----~~v----~~~~~~~~~~~~~~~~~vldg~~~~-~-~~~~~~d~~i~l~ 148 (227)
T 1cke_A 80 VILEGEDVSGEIRTQEVANAASQVAAF-----PRV----REALLRRQRAFRELPGLIADGRDMG-T-VVFPDAPVKIFLD 148 (227)
T ss_dssp EEETTEECHHHHTSHHHHHHHHHHTTC-----HHH----HHHHHHHHHTTCCTTCEEEEESSCC-C-CCCTTCSEEEEEE
T ss_pred EEECCeeCchhhCCHHHHHHHHHhcCC-----HHH----HHHHHHHHHHHHhCCCEEEECCCcc-c-eEecCCCEEEEEe
Confidence 000000111111111000 000 00000 0111223467889987432 1 2345679999999
Q ss_pred cChhHHHHHhhhccccccCC--ChHHHHHHHHhhcccchhhhcCCcccc-ccEecccC-CCchhhhhhhhheeee
Q 035513 160 TDSDVRLSRRIQRDTVERGR--DIEDVLDQYARFVKPSFEEFILPSKKY-ADIIIPRG-GDNDVAIDLIVQHILT 230 (473)
Q Consensus 160 ~~~e~~~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~-ad~vI~~~-~~~~~~i~~i~~~I~~ 230 (473)
++.+++.+|+.++ ...++. +.+...+++..+..+.|.....|.... ++++|+++ .+.++..+++.+.+..
T Consensus 149 ~~~e~~~~R~~~~-l~~rg~~~~~~~~~~~i~~R~~~~~~~~~~pl~~~~~~~~Id~~~~~~~ev~~~I~~~l~~ 222 (227)
T 1cke_A 149 ASSEERAHRRMLQ-LQVKGFSVNFERLLAEIKERDDRDRNRAVAPLVPAADALVLDSTTLSIEQVIEKALQYARQ 222 (227)
T ss_dssp CCHHHHHHHHHHH-HHHHTCCCCHHHHHHHHC-------------CCCCTTCEEEETTTSCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH-HHhCCccCCHHHHHHHHHHHHHhhhhhcccCccCCCCEEEEeCCCCCHHHHHHHHHHHHHH
Confidence 9999999996543 112233 556666666665444444444443333 45889877 4555555666655543
No 32
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=99.39 E-value=1.1e-12 Score=120.56 Aligned_cols=174 Identities=18% Similarity=0.247 Sum_probs=92.8
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCH-------HHHhhccCccCCCCccccHHHH
Q 035513 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD-------EKLQNLHDYNFDHPDAFDTELL 97 (473)
Q Consensus 25 ~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~-------~~~~~~~~~~f~~~~~~d~~~l 97 (473)
+.+..+++.+|+|+|++||||||+++.|++.++ +.+++.|++++.... ......-......+.......+
T Consensus 8 ~~~~~~~~~~I~l~G~~GsGKsT~~~~L~~~~g---~~~i~~d~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~l 84 (203)
T 1ukz_A 8 PAFSPDQVSVIFVLGGPGAGKGTQCEKLVKDYS---FVHLSAGDLLRAEQGRAGSQYGELIKNCIKEGQIVPQEITLALL 84 (203)
T ss_dssp CCSCTTTCEEEEEECSTTSSHHHHHHHHHHHSS---CEEEEHHHHHHHHHHSTTCSCHHHHHHHHHTTCCCCHHHHHHHH
T ss_pred CCCCCCCCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEeHHHHHHHHHhccCCHHHHHHHHHHHcCCcCCHHHHHHHH
Confidence 345566788999999999999999999999987 899999876632100 0000000000000111111111
Q ss_pred HHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCCh--h---hhhccCeEEEEecChhHHHHHhhhc
Q 035513 98 LSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--R---VRDLMSMKIFVDTDSDVRLSRRIQR 172 (473)
Q Consensus 98 ~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~---~~~~~Dl~I~L~~~~e~~~~R~~~R 172 (473)
.+.+... ...+.+.+++||.....+. . .....|++|||++|.+++++|+.+|
T Consensus 85 ~~~i~~~-----------------------l~~g~~~~i~dg~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~Rl~~R 141 (203)
T 1ukz_A 85 RNAISDN-----------------------VKANKHKFLIDGFPRKMDQAISFERDIVESKFILFFDCPEDIMLERLLER 141 (203)
T ss_dssp HHHHHHH-----------------------HHTTCCEEEEETCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHH
T ss_pred HHHHHhh-----------------------hccCCCeEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHhc
Confidence 1111110 0122356778875422111 1 1123689999999999999999988
Q ss_pred ccc-ccC-CChHHHH---HHHHhhcccchhhhcCCccccccE--ecccCCCchhhhhhhhheee
Q 035513 173 DTV-ERG-RDIEDVL---DQYARFVKPSFEEFILPSKKYADI--IIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 173 ~~~-~~~-~~~~~~~---~~~~~~~~~~~~~~i~~~~~~ad~--vI~~~~~~~~~i~~i~~~I~ 229 (473)
+.. .+. ...+.+. ..|.....+.++.| ..++. +|+++.+.++..+++.+.+.
T Consensus 142 ~~~~~~~~~~~e~~~~r~~~~~~~~~~~~~~~-----~~~~~vi~id~~~~~e~v~~~i~~~l~ 200 (203)
T 1ukz_A 142 GKTSGRSDDNIESIKKRFNTFKETSMPVIEYF-----ETKSKVVRVRCDRSVEDVYKDVQDAIR 200 (203)
T ss_dssp HHHHCCTTCSHHHHHHHHHHHHHTTHHHHHHH-----HTTTCEEEEECSSCHHHHHHHHHHHHH
T ss_pred cccCCCCCCCHHHHHHHHHHHHHhhHHHHHHH-----HhcCcEEEEECCCCHHHHHHHHHHHHh
Confidence 532 111 2333332 23343333433322 23453 35666555555555555443
No 33
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=99.37 E-value=3.7e-13 Score=126.13 Aligned_cols=192 Identities=17% Similarity=0.211 Sum_probs=108.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc--
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH-- 106 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~-- 106 (473)
+.++++|+|.|++||||||+++.|++.++ +.+++.|.+|+.+....... ... ..|.+.+.+.+..+.-
T Consensus 6 ~~~~~~i~i~G~~GsGKsTla~~la~~lg---~~~~d~g~~~r~~~~~~~~~--gi~-----~~d~~~~~~~~~~~~~~~ 75 (233)
T 3r20_A 6 VSGSLVVAVDGPAGTGKSSVSRGLARALG---ARYLDTGAMYRIATLAVLRA--GAD-----LTDPAAIEKAAADAEIGV 75 (233)
T ss_dssp ---CCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHHHHH--TCC-----TTCHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC---CCcccCCcHHHHHHHHHHHc--CCC-----chhhHHHHHHHHhCCEEE
Confidence 44578999999999999999999999997 89999999885543221111 111 1122222222222100
Q ss_pred -----CCceecccccccc--------------------cccc-ccccccCCC-cEEEEecccccCChhhhhccCeEEEEe
Q 035513 107 -----GQAVSIPDYDFKS--------------------HKRK-QQSRLINPS-DVFILEGILVLHDPRVRDLMSMKIFVD 159 (473)
Q Consensus 107 -----g~~i~~p~~~~~~--------------------~~~~-~~~~~~~~~-~viIlEG~~~l~~~~~~~~~Dl~I~L~ 159 (473)
+..+.+..-+-.. +..+ ..++.+... ..+|+||-..... +....++.|||+
T Consensus 76 ~~~~~~~~v~l~g~~v~~~ir~~~v~~~~s~va~~~~vr~~l~~~qr~~a~~~~~~V~~GRd~gt~--V~pda~lkifl~ 153 (233)
T 3r20_A 76 GSDPDVDAAFLAGEDVSSEIRGDAVTGAVSAVSAVPAVRTRLVDIQRKLATEGGRVVVEGRDIGTV--VLPDADVKIFLT 153 (233)
T ss_dssp CCCTTSCCEEETTEECTTGGGSHHHHHHHHHHHTCHHHHHHHHHHHHHHHTSSSCEEEEESSCCCC--CCTTCSEEEEEE
T ss_pred eecCCCcEEEECCeehhhhhcchHHHHHHHHHhcchHHHHHHHHHHHHHHHhcCcEEEecccceeE--EcCCCCEEEEEE
Confidence 0001100000000 0001 111222333 5678888533211 112247999999
Q ss_pred cChhHHHHHhhhcccc-ccCCChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhheeeecc
Q 035513 160 TDSDVRLSRRIQRDTV-ERGRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHILTKL 232 (473)
Q Consensus 160 ~~~e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I~~~l 232 (473)
+|.++|.+|+.++... ..+.+.+++..+...+.......++.|.....| ++|+++. +.++.++.+++.++..+
T Consensus 154 A~~e~Ra~Rr~~~l~~~~~~~~~~~~~~~i~~rD~~d~~r~~~pl~~~~dal~IDTs~l~iee~v~~I~~~i~~~~ 229 (233)
T 3r20_A 154 ASAEERARRRNAQNVANGLPDDYATVLADVQRRDHLDSTRPVSPLRAADDALVVDTSDMDQAQVIAHLLDLVTAQA 229 (233)
T ss_dssp CCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHSCSSCCSCCTTSEEEECTTSCHHHHHHHHHHHC----
T ss_pred CCHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHhhhhccccccccccCcEEEECCCCCHHHHHHHHHHHHHHhh
Confidence 9999999999864221 124577888888888777777777788766666 9998773 45566666666665443
No 34
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=99.36 E-value=4.4e-13 Score=121.85 Aligned_cols=176 Identities=20% Similarity=0.324 Sum_probs=91.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCce
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV 110 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i 110 (473)
++.+|+|+|++||||||+|+.|++.++ +.+++.|++++.... .. .......+.+.+ ..|...
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~~~~~~----~~--------~~~~~~~~~~~~---~~g~~~ 63 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYG---YTHLSAGELLRDERK----NP--------DSQYGELIEKYI---KEGKIV 63 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH----CT--------TSTTHHHHHHHH---HTTCCC
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHHHHHh----cc--------CChHHHHHHHHH---HCCCcC
Confidence 467999999999999999999999987 899999887632110 00 000001111111 111110
Q ss_pred eccccccccccccccc-cccCCCcEEEEecccccCCh--hhhh------ccCeEEEEecChhHHHHHhhhcccc-ccCC-
Q 035513 111 SIPDYDFKSHKRKQQS-RLINPSDVFILEGILVLHDP--RVRD------LMSMKIFVDTDSDVRLSRRIQRDTV-ERGR- 179 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~-~~~~~~~viIlEG~~~l~~~--~~~~------~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~~- 179 (473)
..+.........+... ........+|+||.+..... .+.. .+|++|||++|++++++|+.+|+.. .+..
T Consensus 64 ~~~~~~~~l~~~~~~~~~~~~~~~~vi~dg~~~~~~~~~~~~~~~~~~~~~~~~i~l~~~~e~~~~R~~~R~~~~~r~~~ 143 (196)
T 1tev_A 64 PVEITISLLKREMDQTMAANAQKNKFLIDGFPRNQDNLQGWNKTMDGKADVSFVLFFDCNNEICIERCLERGKSSGRSDD 143 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHCTTCCEEEEESCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHHTSSCCSC
T ss_pred CHHHHHHHHHHHHHhhhccccCCCeEEEeCCCCCHHHHHHHHHHhcccCCCCEEEEEECCHHHHHHHHHcccccCCCCCC
Confidence 0000000000000000 01223567889987654321 1221 4678999999999999999988642 2222
Q ss_pred ChHH---HHHHHHhhcccchhhhcCCccccccE-ecccCCCchhhhhhhhhee
Q 035513 180 DIED---VLDQYARFVKPSFEEFILPSKKYADI-IIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 180 ~~~~---~~~~~~~~~~~~~~~~i~~~~~~ad~-vI~~~~~~~~~i~~i~~~I 228 (473)
..+. ....|.....|..+.| ...+++ +|+++.+.++..+.+.+.+
T Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~y----~~~~~~~~id~~~~~~~v~~~i~~~l 192 (196)
T 1tev_A 144 NRESLEKRIQTYLQSTKPIIDLY----EEMGKVKKIDASKSVDEVFDEVVQIF 192 (196)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHH----HHTTCEEEEETTSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHH----HhcCCEEEEECCCCHHHHHHHHHHHH
Confidence 2222 2334444433322222 344665 7777644455555555444
No 35
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=99.36 E-value=1.3e-13 Score=126.08 Aligned_cols=121 Identities=15% Similarity=0.244 Sum_probs=70.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHH---HhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK---LQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~---~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
+++.+|+|+|++||||||+|+.|++.++ +.+++.|++++...... ......+ |........+.....+...
T Consensus 10 ~~~~~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~~~~~~~~~~~~~~i~~~-~~~g~~~~~~~~~~~~~~~-- 83 (199)
T 2bwj_A 10 RKCKIIFIIGGPGSGKGTQCEKLVEKYG---FTHLSTGELLREELASESERSKLIRDI-MERGDLVPSGIVLELLKEA-- 83 (199)
T ss_dssp HHSCEEEEEECTTSSHHHHHHHHHHHHT---CEEEEHHHHHHHHHHHTCHHHHHHHHH-HHTTCCCCHHHHHHHHHHH--
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHhCCHHHHHHHHH-HHcCCcCCHHHHHHHHHHH--
Confidence 3467899999999999999999999997 89999998864321100 0000000 0000000111111111100
Q ss_pred CCceeccccccccccccccccccCCCcEEEEecccccCCh--hhhh---ccCeEEEEecChhHHHHHhhhccc
Q 035513 107 GQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RVRD---LMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~~~---~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
+. ........+|+||....... .+.. ..|++|||++|++++.+|+..|+.
T Consensus 84 ----------------i~--~~~~~~~~vi~dg~~~~~~~~~~l~~~~~~~~~~i~l~~~~~~~~~R~~~R~~ 138 (199)
T 2bwj_A 84 ----------------MV--ASLGDTRGFLIDGYPREVKQGEEFGRRIGDPQLVICMDCSADTMTNRLLQMSR 138 (199)
T ss_dssp ----------------HH--HHTTSCSCEEEETCCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHTCC
T ss_pred ----------------Hh--cccccCccEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHcCCC
Confidence 00 01123567889986543221 1222 468999999999999999998854
No 36
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=99.36 E-value=9.9e-13 Score=119.32 Aligned_cols=171 Identities=21% Similarity=0.314 Sum_probs=88.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
..+.+|+|+|++||||||+|+.|++.++ +.+++.|++.+.... . +.+ ....+.+.+ ..+..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~~----~------~~~---~~~~i~~~~---~~g~~ 64 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFG---WVHLSAGDLLRQEQQ----S------GSK---DGEMIATMI---KNGEI 64 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHH----T------TCT---THHHHHHHH---HTTCC
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhC---CeEeeHHHHHHHHHh----c------CCH---HHHHHHHHH---HCCCC
Confidence 3467999999999999999999999987 899999876532110 0 000 000111111 01100
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCCh--hh----hh--ccCeEEEEecChhHHHHHhhhcccc-ccC-C
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RV----RD--LMSMKIFVDTDSDVRLSRRIQRDTV-ERG-R 179 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~----~~--~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~-~ 179 (473)
. ++......+...........+|+||....... .+ .. .+|++|||++|++++.+|+..|+.. .+. .
T Consensus 65 ~----~~~~~~~~l~~~i~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~~~~~r~~~ 140 (194)
T 1qf9_A 65 V----PSIVTVKLLKNAIDANQGKNFLVDGFPRNEENNNSWEENMKDFVDTKFVLFFDCPEEVMTQRLLKRGESSGRSDD 140 (194)
T ss_dssp C----CHHHHHHHHHHHHHTSTTCCEEEETCCCSHHHHHHHHHHHTTTCEEEEEEEEECCHHHHHHHHHHHHTTSCCTTC
T ss_pred C----CHHHHHHHHHHHHHhcCCCCEEEeCcCCCHHHHHHHHHHHhccCCCCEEEEEECCHHHHHHHHHhccccCCCCCC
Confidence 0 00000000000000013457888885432211 12 11 5689999999999999999988532 121 1
Q ss_pred ChHHHHH---HHHhhcccchhhhcCCcccccc--EecccCCCchhhhhhhhhee
Q 035513 180 DIEDVLD---QYARFVKPSFEEFILPSKKYAD--IIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 180 ~~~~~~~---~~~~~~~~~~~~~i~~~~~~ad--~vI~~~~~~~~~i~~i~~~I 228 (473)
..+.+.. .|.....+.++.| ..+| ++|+++.+.++..+.+.+.+
T Consensus 141 ~~~~~~~ri~~~~~~~~~~~~~~-----~~~~~~~~id~~~~~~~~~~~i~~~l 189 (194)
T 1qf9_A 141 NIESIKKRFNTFNVQTKLVIDHY-----NKFDKVKIIPANRDVNEVYNDVENLF 189 (194)
T ss_dssp SHHHHHHHHHHHHHTHHHHHHHH-----HHTTCEEEEECSSCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhHHHHHHHH-----HhCCCEEEEECCCCHHHHHHHHHHHH
Confidence 2333322 2322222322222 3356 67877655555555555444
No 37
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=99.36 E-value=7.2e-14 Score=132.75 Aligned_cols=61 Identities=20% Similarity=0.244 Sum_probs=44.2
Q ss_pred cceeeccc-cc----ccccccccccCCCCCCCCC---CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 3 TVIELADD-FA----DDLSLQSASSESTTMPTKQ---PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 3 ~~i~~~~~-~~----~~~~l~~~~~~~~~~~~~~---~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.+|+++|+ ++ ....|+++ ++...+ +.+|+|+|++||||||+++.|++.++ +.+++.|.+++
T Consensus 16 ~~l~~~~~~~~~~~~~~~~l~~~-----~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~lg---~~~~d~d~~~~ 84 (250)
T 3nwj_A 16 ALLETGSLLHSPFDEEQQILKKK-----AEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSLG---YTFFDCDTLIE 84 (250)
T ss_dssp ----------------CHHHHHH-----HHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred CceEEcceeeEEecCcchhhhhh-----hhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhcC---CcEEeCcHHHH
Confidence 47899999 55 34588899 777777 78999999999999999999999998 89999987763
No 38
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=99.34 E-value=3.4e-12 Score=117.18 Aligned_cols=160 Identities=13% Similarity=0.101 Sum_probs=89.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
+...+.+|+|+|++||||||+++.|++.++ +.+++.|+++........ .. ...|.. .+.....+.+....
T Consensus 14 m~~~~~~I~l~G~~GsGKSTla~~L~~~lg---~~~i~~d~~~~~~~~~~~-~~-g~~~~~---~~~~~~~~~l~~~~-- 83 (202)
T 3t61_A 14 VRRFPGSIVVMGVSGSGKSSVGEAIAEACG---YPFIEGDALHPPENIRKM-SE-GIPLTD---DDRWPWLAAIGERL-- 83 (202)
T ss_dssp -CCCSSCEEEECSTTSCHHHHHHHHHHHHT---CCEEEGGGGCCHHHHHHH-HH-TCCCCH---HHHHHHHHHHHHHH--
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CEEEeCCcCcchhhHHHH-hc-CCCCCc---hhhHHHHHHHHHHH--
Confidence 334467899999999999999999999997 889999998732111111 11 111211 11111111122111
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCC--hhhhhcc---CeEEEEecChhHHHHHhhhccccccCCChH
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD--PRVRDLM---SMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~--~~~~~~~---Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.....+|+|+.+.... ..+.... +.+|||++|.+++++|+.+|+.. ... .
T Consensus 84 ----------------------~~~~~vivd~~~~~~~~~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~~~--~~~-~ 138 (202)
T 3t61_A 84 ----------------------ASREPVVVSCSALKRSYRDKLRESAPGGLAFVFLHGSESVLAERMHHRTGH--FMP-S 138 (202)
T ss_dssp ----------------------TSSSCCEEECCCCSHHHHHHHHHTSTTCCEEEEEECCHHHHHHHHHHHHSS--CCC-H
T ss_pred ----------------------hcCCCEEEECCCCCHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHHHHhhcc--CCC-H
Confidence 1233455665443111 1122222 48999999999999999988532 122 3
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+..........+ ++...++++|+++.+.++..+++.+.+.
T Consensus 139 ~~~~~~~~~~~~-------~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 178 (202)
T 3t61_A 139 SLLQTQLETLED-------PRGEVRTVAVDVAQPLAEIVREALAGLA 178 (202)
T ss_dssp HHHHHHHHHCCC-------CTTSTTEEEEESSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCC-------CCCCCCeEEEeCCCCHHHHHHHHHHHHH
Confidence 333333222221 2245689999877555555555554443
No 39
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=99.33 E-value=5.8e-13 Score=122.52 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=95.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhh--------
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLK-------- 105 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~-------- 105 (473)
+|+|+|++||||||+++.|++.++ +.+++.|++++........ ....++.+ +.+.+.+..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg---~~~~d~d~~~~~~~~~~~~--~g~~~~~~-----~~~~~~~~~~~~~~~~~~~ 73 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG---VPYLSSGLLYRAAAFLALR--AGVDPGDE-----EGLLALLEGLGVRLLAQAE 73 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHHHHH--HTCCTTCH-----HHHHHHHHHTTCEEECCTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC---CceeccchHHHhhhhhhHh--cCCCCCCH-----HHHHHHHHhCceeeeecCC
Confidence 899999999999999999999997 8999999887543211110 01112111 12222222211
Q ss_pred ------cCCceecccccc---------ccc----cccc-cccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHH
Q 035513 106 ------HGQAVSIPDYDF---------KSH----KRKQ-QSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVR 165 (473)
Q Consensus 106 ------~g~~i~~p~~~~---------~~~----~~~~-~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~ 165 (473)
.|+.+..+.... ..+ ..+. ...... ..+|+||.... ..+.+.+|++|||++|++++
T Consensus 74 ~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~vi~g~~~~--~~~~~~~d~~i~l~a~~e~~ 149 (208)
T 3ake_A 74 GNRVLADGEDLTSFLHTPEVDRVVSAVARLPGVRAWVNRRLKEVP--PPFVAEGRDMG--TAVFPEAAHKFYLTASPEVR 149 (208)
T ss_dssp CCEEEETTEECGGGSSSHHHHHHHHHHHTCHHHHHHHHHHHHHSC--SCEEEEESSCC--CCCCTTCSEEEEEECCHHHH
T ss_pred CceEEECCeeCchhhChHHHHHHHHHhcccHHHHHHHHHHHHHhc--CCEEEEcccee--EEEecCCcEEEEEECCHHHH
Confidence 010000000000 000 0000 000122 57889998765 23445678999999999999
Q ss_pred HHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhhee
Q 035513 166 LSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHI 228 (473)
Q Consensus 166 ~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I 228 (473)
.+|+.+|.. .+.++....+..+...+...+ ...+| ++|+++. +.++..+.+.+.+
T Consensus 150 ~~R~~~r~~----~~~~~~~~~~~~R~~~~~~~~----~~~ad~~~Id~~~~~~ee~~~~I~~~~ 206 (208)
T 3ake_A 150 AWRRARERP----QAYEEVLRDLLRRDERDKAQS----APAPDALVLDTGGMTLDEVVAWVLAHI 206 (208)
T ss_dssp HHHHHHTSS----SCHHHHHHHHHHHHHTC--CC----CCCTTCEEEETTTSCHHHHHHHHHHHH
T ss_pred HHHHHhhcc----cCHHHHHHHHHHHHHHHhhcc----cCCCCEEEEECCCCCHHHHHHHHHHHH
Confidence 999988853 344555555554332221111 34577 9998875 5555555555443
No 40
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=99.31 E-value=4.3e-13 Score=121.30 Aligned_cols=162 Identities=19% Similarity=0.191 Sum_probs=87.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcCCce
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHGQAV 110 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g~~i 110 (473)
+.+|+|+|++||||||+++.|++.++ +.+++.|++.+........+ .|...+...+ ..-.+.+..+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~---~~~i~~d~~~~~~~g~~~~~----~~~~~g~~~~~~~~~~~~~~~~----- 72 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTK---RILYDSDKEIEKRTGADIAW----IFEMEGEAGFRRREREMIEALC----- 72 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHHHHHTSCHHH----HHHHHHHHHHHHHHHHHHHHHH-----
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHHHHcCCChhh----HHHHhCHHHHHHHHHHHHHHHH-----
Confidence 56799999999999999999999997 89999988753210000000 0000000000 00111122221
Q ss_pred eccccccccccccccccccCCCcEEEEecccccCChhhh---hccCeEEEEecChhHHHHHh--hhccccccCCC-h---
Q 035513 111 SIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVR---DLMSMKIFVDTDSDVRLSRR--IQRDTVERGRD-I--- 181 (473)
Q Consensus 111 ~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~---~~~Dl~I~L~~~~e~~~~R~--~~R~~~~~~~~-~--- 181 (473)
.....++..|......+... ...+++|||++|.+++.+|+ ..|. .++.. .
T Consensus 73 -------------------~~~~~vi~~gg~~~~~~~~~~~l~~~~~vi~L~~~~e~l~~Rl~~~~~~--~rp~~~~~~~ 131 (185)
T 3trf_A 73 -------------------KLDNIILATGGGVVLDEKNRQQISETGVVIYLTASIDTQLKRIGQKGEM--RRPLFIKNNS 131 (185)
T ss_dssp -------------------HSSSCEEECCTTGGGSHHHHHHHHHHEEEEEEECCHHHHHHHHHCCTTC--SSCCCCCHHH
T ss_pred -------------------hcCCcEEecCCceecCHHHHHHHHhCCcEEEEECCHHHHHHHHhhcCCC--CCCCCCCCCH
Confidence 11334455554333344322 22348999999999999998 3332 22221 1
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeeeccc
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILTKLG 233 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~~l~ 233 (473)
...+........+.| ...+|++|+++. +.++.++.+++.+...+.
T Consensus 132 ~~~l~~~~~~r~~~y-------~~~ad~~Idt~~~~~~e~~~~I~~~l~~~~~ 177 (185)
T 3trf_A 132 KEKLQQLNEIRKPLY-------QAMADLVYPTDDLNPRQLATQILVDIKQTYS 177 (185)
T ss_dssp HHHHHHHHHHHHHHH-------HHHCSEEEECTTCCHHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHHHHHHH-------hhcCCEEEECCCCCHHHHHHHHHHHHHHHhh
Confidence 222332222223333 345999999885 456677777777766553
No 41
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=99.30 E-value=8e-12 Score=113.11 Aligned_cols=43 Identities=19% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHH-hCCCCEEEEecCCCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISR-LRDQRVVLVNQDSFYH 71 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~-l~~~~~~~is~D~~~~ 71 (473)
++...++.+|+|+|++||||||+++.|++. ++ +.++++|++.+
T Consensus 4 ~~~~~~~~~I~l~G~~GsGKSTv~~~La~~l~g---~~~id~d~~~~ 47 (184)
T 1y63_A 4 SMEQPKGINILITGTPGTGKTSMAEMIAAELDG---FQHLEVGKLVK 47 (184)
T ss_dssp --CCCSSCEEEEECSTTSSHHHHHHHHHHHSTT---EEEEEHHHHHH
T ss_pred CcCCCCCCEEEEECCCCCCHHHHHHHHHHhcCC---CEEeeHHHHHH
Confidence 566667789999999999999999999998 66 99999997663
No 42
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=99.30 E-value=4.9e-12 Score=119.26 Aligned_cols=188 Identities=20% Similarity=0.279 Sum_probs=101.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc-
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH- 106 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~- 106 (473)
...++.+|+|+|++||||||+++.|++.++ +.+++.|++++......... ...++. .+.+.+.+..+..
T Consensus 12 ~~~~~~~i~i~G~~gsGKst~~~~l~~~lg---~~~~d~d~~~~~~~~~~~~~--g~~~~~-----~~~~~~~~~~~~~~ 81 (236)
T 1q3t_A 12 DKMKTIQIAIDGPASSGKSTVAKIIAKDFG---FTYLDTGAMYRAATYMALKN--QLGVEE-----VEALLALLDQHPIS 81 (236)
T ss_dssp --CCCCEEEEECSSCSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHHHHT--TCCTTC-----HHHHHHHHHHSCCE
T ss_pred cccCCcEEEEECCCCCCHHHHHHHHHHHcC---CceecCCCeeEcceeeeecc--CCCccc-----HHHHHHHHHhcccc
Confidence 345567899999999999999999999987 89999999885321100000 111111 1112222211100
Q ss_pred -------CCceeccc--ccccccc------------------ccc-cccccCCCcEEEEecccccCChhhhhccCeEEEE
Q 035513 107 -------GQAVSIPD--YDFKSHK------------------RKQ-QSRLINPSDVFILEGILVLHDPRVRDLMSMKIFV 158 (473)
Q Consensus 107 -------g~~i~~p~--~~~~~~~------------------~~~-~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L 158 (473)
+..+.... +...... .+. ..........+++||.... ..+...+|++|||
T Consensus 82 f~~~~~~~~~i~~~G~~~~r~l~~~~v~~~~~~~~~~~~vr~~~~~~~~~~~~~~~~v~~g~~~~--~~~l~~~d~vi~L 159 (236)
T 1q3t_A 82 FGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIG--TVVLPQAELKIFL 159 (236)
T ss_dssp EEEETTTEEEEEETTEEESSSSCSHHHHHHHHHHHTSHHHHHHHHHHHHHHHTTSCEEEECSSCS--SSSGGGCSEEEEE
T ss_pred ccccCCccceEeECCcCchhhhccHHHHHHHHHHccCHHHHHHHHHHHHHhcccCCEEEECCcch--hhhccCCCEEEEE
Confidence 00110000 0000000 000 0011223446777987543 1234567899999
Q ss_pred ecChhHHHHHhhhccccccC--CChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhhee
Q 035513 159 DTDSDVRLSRRIQRDTVERG--RDIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHI 228 (473)
Q Consensus 159 ~~~~e~~~~R~~~R~~~~~~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I 228 (473)
++|++++.+|+..|. ..++ .+.+.+.+.+..+..+....++.|....+| ++|++++ +.++..+.+.+.+
T Consensus 160 ~a~~e~~~~R~~~~~-~~R~~~~~~e~~~~~i~~R~~~~~~~~~~p~~~~~d~~vId~~~~s~eev~~~I~~~l 232 (236)
T 1q3t_A 160 VASVDERAERRYKEN-IAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEA 232 (236)
T ss_dssp ECCHHHHHHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHTTCSSSCCSCCTTCEEEECSSCCHHHHHHHHHHHH
T ss_pred ECCHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHhhhhhhcccccccccCCEEEEcCCCCCHHHHHHHHHHHH
Confidence 999999999985431 1222 355666666665544444444455445556 8998774 5555556655544
No 43
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=99.28 E-value=1.7e-11 Score=112.41 Aligned_cols=163 Identities=15% Similarity=0.133 Sum_probs=87.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
|+..++.+|+|+|++||||||+++.|++.++ ..+++.|++.... ........+.|..+..+. ....+..+..
T Consensus 24 m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~g---~~~i~~d~~~~~~--~~~~~~~g~~~~~~~~~~---~~~~~~~~~~ 95 (200)
T 4eun_A 24 MTGEPTRHVVVMGVSGSGKTTIAHGVADETG---LEFAEADAFHSPE--NIATMQRGIPLTDEDRWP---WLRSLAEWMD 95 (200)
T ss_dssp ----CCCEEEEECCTTSCHHHHHHHHHHHHC---CEEEEGGGGSCHH--HHHHHHTTCCCCHHHHHH---HHHHHHHHHH
T ss_pred hcCCCCcEEEEECCCCCCHHHHHHHHHHhhC---CeEEcccccccHH--HHHHHhcCCCCCCccccc---HHHHHHHHHH
Confidence 3445678999999999999999999999986 8899998876321 111111223333211111 0111111100
Q ss_pred CCceeccccccccccccccccccCCCcEEEEecccccCChhhhhcc------CeEEEEecChhHHHHHhhhccccccCCC
Q 035513 107 GQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM------SMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~------Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
. ....+.. +|++.... .+..+..+ ..+|||++|.+++.+|+.+|+... ..
T Consensus 96 ------------------~-~~~~g~~-viid~~~~--~~~~~~~l~~~~~~~~vv~l~~~~e~l~~Rl~~R~~~~--~~ 151 (200)
T 4eun_A 96 ------------------A-RADAGVS-TIITCSAL--KRTYRDVLREGPPSVDFLHLDGPAEVIKGRMSKREGHF--MP 151 (200)
T ss_dssp ------------------H-HHHTTCC-EEEEECCC--CHHHHHHHTTSSSCCEEEEEECCHHHHHHHHTTCSCCS--SC
T ss_pred ------------------H-HHhcCCC-EEEEchhh--hHHHHHHHHHhCCceEEEEEeCCHHHHHHHHHhcccCC--CC
Confidence 0 0001122 33443221 22222211 268999999999999998885422 22
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+.+..++.... + ++...++++|+++.+.++..+++.+.+.
T Consensus 152 ~~~l~~~~~~~~-~-------~~~~~~~~~Id~~~~~~e~~~~I~~~l~ 192 (200)
T 4eun_A 152 ASLLQSQLATLE-A-------LEPDESGIVLDLRQPPEQLIERALTWLD 192 (200)
T ss_dssp GGGHHHHHHHCC-C-------CCTTSCEEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC-C-------CCCCCCeEEEECCCCHHHHHHHHHHHHH
Confidence 333334443322 1 2345589999987555555566655554
No 44
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=99.28 E-value=1.5e-12 Score=118.68 Aligned_cols=121 Identities=21% Similarity=0.271 Sum_probs=68.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
.++.+|+|+|++||||||+|+.|++.++ +.+++.|++++..... +......+.+.+ ..|+.
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~~~~~~-------------~~~~~~~i~~~~---~~g~~ 67 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYG---YTHLSTGDLLRSEVSS-------------GSARGKKLSEIM---EKGQL 67 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHT-------------TCHHHHHHHHHH---HTTCC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhC---CeEEcHHHHHHHHHHc-------------CChHHHHHHHHH---HcCCc
Confidence 4567899999999999999999999997 8899998876321100 000001111111 11111
Q ss_pred eecccccccccccccc--ccccCCCcEEEEecccccCCh--hh---hhccCeEEEEecChhHHHHHhhhcc
Q 035513 110 VSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDP--RV---RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~--~~---~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
+. +......+.. .........+|+||.....+. .+ ....|++|||++|++++.+|+..|+
T Consensus 68 ~~----~~~~~~~~~~~i~~~~~~~~~vi~d~~~~~~~~~~~~~~~~~~~~~vi~l~~~~e~~~~R~~~R~ 134 (196)
T 2c95_A 68 VP----LETVLDMLRDAMVAKVNTSKGFLIDGYPREVQQGEEFERRIGQPTLLLYVDAGPETMTQRLLKRG 134 (196)
T ss_dssp CC----HHHHHHHHHHHHHHHTTTCSCEEEESCCCSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHHHHH
T ss_pred CC----HHHHHHHHHHHHHhccccCCcEEEeCCCCCHHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHccC
Confidence 10 0000000000 001123457888884332111 01 1346899999999999999998885
No 45
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=99.27 E-value=8.1e-13 Score=119.43 Aligned_cols=159 Identities=14% Similarity=0.136 Sum_probs=85.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHH-HHHHHHHhhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTEL-LLSDMEKLKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~-l~~~l~~l~~g~~i~ 111 (473)
.+|+|+|++||||||+|+.|++.++ +.+++.|++++......... .|...+...+.. ..+.+..+.
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~D~~~~~~~g~~~~~----~~~~~g~~~~~~~~~~~~~~~~------ 69 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALG---VGLLDTDVAIEQRTGRSIAD----IFATDGEQEFRRIEEDVVRAAL------ 69 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHSSCHHH----HHHHHCHHHHHHHHHHHHHHHH------
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcC---CCEEeCchHHHHHcCCCHHH----HHHHhChHHHHHHHHHHHHHHH------
Confidence 3699999999999999999999997 88999998763210000000 000000000000 011111111
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCChhhhhc--cCeEEEEecChhHHHHHhhhccccc--cCCChHHHHHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDL--MSMKIFVDTDSDVRLSRRIQRDTVE--RGRDIEDVLDQ 187 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~--~Dl~I~L~~~~e~~~~R~~~R~~~~--~~~~~~~~~~~ 187 (473)
.....++..|.....++..++. .+.+|||++|.+++.+|+.+|+... ........+..
T Consensus 70 ------------------~~~~~vi~~g~~~v~~~~~~~~l~~~~vV~L~~~~e~~~~Rl~~r~~r~~~~~~~~~~~i~~ 131 (184)
T 2iyv_A 70 ------------------ADHDGVLSLGGGAVTSPGVRAALAGHTVVYLEISAAEGVRRTGGNTVRPLLAGPDRAEKYRA 131 (184)
T ss_dssp ------------------HHCCSEEECCTTGGGSHHHHHHHTTSCEEEEECCHHHHHHHTTCCCCCSSTTSCCHHHHHHH
T ss_pred ------------------hcCCeEEecCCcEEcCHHHHHHHcCCeEEEEeCCHHHHHHHHhCCCCCCCccCCCHHHHHHH
Confidence 0112334444333233322222 5789999999999999998875321 11122333333
Q ss_pred HHhhcccchhhhcCCccccccEecccC-CCchhhhhhhhheee
Q 035513 188 YARFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHIL 229 (473)
Q Consensus 188 ~~~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I~ 229 (473)
+.....+.| ...+|++|+++ .+.++..+.+.+.+.
T Consensus 132 ~~~~r~~~~-------~~~~~~~Idt~~~s~ee~~~~I~~~l~ 167 (184)
T 2iyv_A 132 LMAKRAPLY-------RRVATMRVDTNRRNPGAVVRHILSRLQ 167 (184)
T ss_dssp HHHHHHHHH-------HHHCSEEEECSSSCHHHHHHHHHTTSC
T ss_pred HHHHHHHHH-------hccCCEEEECCCCCHHHHHHHHHHHHh
Confidence 322112222 35689999987 445555566655554
No 46
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=99.26 E-value=3.9e-11 Score=107.36 Aligned_cols=161 Identities=13% Similarity=0.159 Sum_probs=85.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhh-ccCccCCCCcccc-HHHHHHHHHHhh
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQN-LHDYNFDHPDAFD-TELLLSDMEKLK 105 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~-~~~~~f~~~~~~d-~~~l~~~l~~l~ 105 (473)
...++.+|+|+|++||||||+++.|++.++ ..+++.|++.+. ..... .....+....... +..+.+.+..+
T Consensus 4 ~~~~g~~i~l~G~~GsGKSTl~~~l~~~~g---~~~i~~d~~~~~---~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~- 76 (175)
T 1knq_A 4 TNHDHHIYVLMGVSGSGKSAVASEVAHQLH---AAFLDGDFLHPR---RNIEKMASGEPLNDDDRKPWLQALNDAAFAM- 76 (175)
T ss_dssp CCTTSEEEEEECSTTSCHHHHHHHHHHHHT---CEEEEGGGGCCH---HHHHHHHTTCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred cCCCCcEEEEEcCCCCCHHHHHHHHHHhhC---cEEEeCccccch---HHHHHhhcCcCCCccccccHHHHHHHHHHHH-
Confidence 334578999999999999999999999886 899999987632 11111 1111121100000 01111111111
Q ss_pred cCCceeccccccccccccccccccCCCcEEEEecccccCCh---hhhhc-cC-eEEEEecChhHHHHHhhhccccccCCC
Q 035513 106 HGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP---RVRDL-MS-MKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 106 ~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~---~~~~~-~D-l~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
......+|++.... ... .+... .+ .+|||++|.+++.+|+..|+... ..
T Consensus 77 -----------------------~~~~~~~vi~~~~~-~~~~~~~l~~~~~~~~vv~l~~~~e~~~~R~~~R~~~~--~~ 130 (175)
T 1knq_A 77 -----------------------QRTNKVSLIVCSAL-KKHYRDLLREGNPNLSFIYLKGDFDVIESRLKARKGHF--FK 130 (175)
T ss_dssp -----------------------HHHCSEEEEECCCC-SHHHHHHHHTTCTTEEEEEEECCHHHHHHHHHTSTTCC--CC
T ss_pred -----------------------HhcCCcEEEEeCch-HHHHHHHHHhcCCCEEEEEEECCHHHHHHHHHhccCCC--Cc
Confidence 01122445553221 111 12222 25 69999999999999999885321 12
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I 228 (473)
.+.+..++.....+. +...+|++|+++.+.++..+++.+.+
T Consensus 131 ~~~~~~~~~~~~~~~-------~~~~~~~~Id~~~~~~~~~~~i~~~l 171 (175)
T 1knq_A 131 TQMLVTQFETLQEPG-------ADETDVLVVDIDQPLEGVVASTIEVI 171 (175)
T ss_dssp HHHHHHHHHHCCCCC-------TTCTTEEEEECSSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHhhhCcc-------cCCCCeEEEeCCCCHHHHHHHHHHHH
Confidence 222222332211110 34568999997754445555555443
No 47
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=99.25 E-value=2.2e-12 Score=114.85 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=33.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+.+|+|+|++||||||+|+.|++.++ +.++++|.+++
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg---~~~id~D~~~~ 43 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALK---LEVLDTDMIIS 43 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHT---CCEEEHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhC---CCEEEChHHHH
Confidence 46899999999999999999999998 89999988763
No 48
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=99.25 E-value=1.7e-12 Score=120.67 Aligned_cols=183 Identities=18% Similarity=0.262 Sum_probs=94.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhh--------c---cCccC-----------CCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQN--------L---HDYNF-----------DHP 89 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~--------~---~~~~f-----------~~~ 89 (473)
+.+|+|+|++||||||+++.|++.++ +.+++.|++++......... . ....| ..-
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g---~~~~~~d~~~~~~~~~~~~~~~~~~i~~~~~~~~~~f~~~~~~g~~i~~~g 79 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELS---MIYVDTGAMYRALTYKYLKLNKTEDFAKLVDQTTLDLTYKADKGQCVILDN 79 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT---CEEEEHHHHHHHHHHHHHHTTSCSCHHHHHHTCCEEEEECTTCCEEEEETT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC---CceecCChHHHHHHHHHHHhhhhHHHHHHHHhccccccccccccceEEeCC
Confidence 46899999999999999999999987 89999998875321100000 0 00001 000
Q ss_pred ----ccccHHHHHHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHH
Q 035513 90 ----DAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVR 165 (473)
Q Consensus 90 ----~~~d~~~l~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~ 165 (473)
..+....+.+.+..+.. +|........ ..........++++|... ...+...+|++|||++|.+++
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~-----~p~v~~~~~~---~~~~~~~~~~~vi~g~~~--~~~~~~~~~~vi~l~a~~e~~ 149 (219)
T 2h92_A 80 EDVTDFLRNNDVTQHVSYVAS-----KEPVRSFAVK---KQKELAAEKGIVMDGRDI--GTVVLPDADLKVYMIASVEER 149 (219)
T ss_dssp EECGGGSSSSHHHHHHHHHHT-----SHHHHHHHHH---HHHHHHTTCCEEEEESSC--CCCCCTTCSEEEEEECCHHHH
T ss_pred ccchhhcCcHHHHHHHHHhcc-----CHHHHHHHHH---HHHHhccCCcEEEEcCCc--cceecCCCCEEEEEECCHHHH
Confidence 00101111111111100 1111000000 001112234577787533 122344568999999999999
Q ss_pred HHHhhhccccccCC--ChHHHHHHHHhhcccchhhhcCCcccccc-EecccCC-Cchhhhhhhhhee
Q 035513 166 LSRRIQRDTVERGR--DIEDVLDQYARFVKPSFEEFILPSKKYAD-IIIPRGG-DNDVAIDLIVQHI 228 (473)
Q Consensus 166 ~~R~~~R~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~-~~~~~i~~i~~~I 228 (473)
.+|+.+|. ..++. +.+.+...+..+..+.....+.+....+| ++|+++. +.++..+.+.+.+
T Consensus 150 ~~R~~~~~-~~r~~~~~~e~~~~~~~~r~~~d~~r~~~~~~~~~d~~~Id~~~~~~ee~~~~I~~~l 215 (219)
T 2h92_A 150 AERRYKDN-QLRGIESNFEDLKRDIEARDQYDMNREISPLRKADDAVTLDTTGKSIEEVTDEILAMV 215 (219)
T ss_dssp HHHHHHHH-HHTTCCCCHHHHHHHHHHHHHHHHHCSSSCSCCCTTCEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHH-HhcCcccCHHHHHHHHHHHHHhhhhhhccccccCCCeEEEECCCCCHHHHHHHHHHHH
Confidence 99986531 12232 55666666654432223223334344466 9998774 4455555555443
No 49
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=99.24 E-value=3.8e-12 Score=116.81 Aligned_cols=169 Identities=15% Similarity=0.219 Sum_probs=88.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HH-hhccCccCCCCccccHHHHHHHHHHh
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KL-QNLHDYNFDHPDAFDTELLLSDMEKL 104 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~-~~~~~~~f~~~~~~d~~~l~~~l~~l 104 (473)
....+++|+|+|++||||||+|+.|++.++ +.+++.|++.+..... .. .....+ |...+....+.....+...
T Consensus 16 ~~~~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i~~d~~~r~~~~~~~~~g~~i~~~-~~~g~~~~~~~~~~~~~~~ 91 (201)
T 2cdn_A 16 PRGSHMRVLLLGPPGAGKGTQAVKLAEKLG---IPQISTGELFRRNIEEGTKLGVEAKRY-LDAGDLVPSDLTNELVDDR 91 (201)
T ss_dssp CCCSCCEEEEECCTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHHHTTCHHHHHHHHH-HHHTCCCCHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CcEEehhHHHHHHHHcCChHHHHHHHH-HHcCCcccHHHHHHHHHHH
Confidence 345567899999999999999999999987 7899998776321000 00 000000 0000000011111111111
Q ss_pred hcCCceeccccccccccccccccccCCCcEEEEecccccCCh-----h-hh---hccCeEEEEecChhHHHHHhhhcccc
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-----R-VR---DLMSMKIFVDTDSDVRLSRRIQRDTV 175 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-----~-~~---~~~Dl~I~L~~~~e~~~~R~~~R~~~ 175 (473)
.. . ......+|+||....... . +. ..+|++|||++|++++.+|+..|+..
T Consensus 92 ~~------------------~---~~~~~~vIldg~~~~~~~~~~l~~~l~~~~~~~~~vi~l~~~~e~~~~Rl~~R~r~ 150 (201)
T 2cdn_A 92 LN------------------N---PDAANGFILDGYPRSVEQAKALHEMLERRGTDIDAVLEFRVSEEVLLERLKGRGRA 150 (201)
T ss_dssp TT------------------S---GGGTTCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHHHCCT
T ss_pred Hh------------------c---ccCCCeEEEECCCCCHHHHHHHHHHHHhcCCCCCEEEEEECCHHHHHHHHHcCCCC
Confidence 10 0 011234788874321110 1 11 13689999999999999999988421
Q ss_pred ccCCChHHH---HHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhee
Q 035513 176 ERGRDIEDV---LDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 176 ~~~~~~~~~---~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I 228 (473)
....+.+ ...|.....+.++.| ..++++|+++.+.++..+++.+.+
T Consensus 151 --~~~~e~~~~r~~~~~~~~~~~~~~~-----~~~~~~Id~~~~~eev~~~I~~~l 199 (201)
T 2cdn_A 151 --DDTDDVILNRMKVYRDETAPLLEYY-----RDQLKTVDAVGTMDEVFARALRAL 199 (201)
T ss_dssp --TCSHHHHHHHHHHHHHHTTTHHHHT-----TTTEEEEECCSCHHHHHHHHHHHT
T ss_pred --CCCHHHHHHHHHHHHHhhHHHHHHh-----cCcEEEEeCCCCHHHHHHHHHHHH
Confidence 1223322 223333322322222 447888887655555555555443
No 50
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=99.22 E-value=3.6e-11 Score=106.89 Aligned_cols=159 Identities=15% Similarity=0.164 Sum_probs=86.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
.+|+|+|++||||||+++.|++.++ +.+++.|.+..... ....+.+....+..+..+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~---~~~i~~d~~~~~~~------------------~~~~~~~~~~~l~~~~~vi~ 60 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELK---YPIIKGSSFELAKS------------------GNEKLFEHFNKLADEDNVII 60 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHC---CCEEECCCHHHHTT------------------CHHHHHHHHHHHTTCCSEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC---CeeecCcccccchh------------------HHHHHHHHHHHHHhCCCeEE
Confidence 4799999999999999999999997 88999997763211 11122223334444444332
Q ss_pred cccccccccccccccccCCCcEEEEecccccCChh----hh---hccCeEEEEecChhHHHHHhhhccccccCCChHHHH
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR----VR---DLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~----~~---~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~ 185 (473)
..+.. ... ..... . .+. ...... +. ...|++|||++|++++.+|+.+|.. ........
T Consensus 61 dr~~~---~~~----v~~~~-~---~~~-~~~~~~~~~~l~~~~~~~~~~i~l~~~~e~~~~R~~~r~r---~~~~~~~~ 125 (173)
T 3kb2_A 61 DRFVY---SNL----VYAKK-F---KDY-SILTERQLRFIEDKIKAKAKVVYLHADPSVIKKRLRVRGD---EYIEGKDI 125 (173)
T ss_dssp ESCHH---HHH----HHTTT-B---TTC-CCCCHHHHHHHHHHHTTTEEEEEEECCHHHHHHHHHHHSC---SCCCHHHH
T ss_pred eeeec---chH----HHHHH-H---HHh-hHhhHHHHHHHhccCCCCCEEEEEeCCHHHHHHHHHhcCC---cchhhhHH
Confidence 21110 000 00000 0 000 000111 11 2357899999999999999988732 11112222
Q ss_pred HHHHhhcccchhhhcCCccccccEecccCC-Cchhhhhhhhheeeecc
Q 035513 186 DQYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILTKL 232 (473)
Q Consensus 186 ~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~-~~~~~i~~i~~~I~~~l 232 (473)
... ...|+.....+ ..++++|+++. +.++..+++.+.++...
T Consensus 126 ~~~----~~~~~~~~~~~-~~~~~~id~~~~~~~ev~~~I~~~~~~~~ 168 (173)
T 3kb2_A 126 DSI----LELYREVMSNA-GLHTYSWDTGQWSSDEIAKDIIFLVELEH 168 (173)
T ss_dssp HHH----HHHHHHHHHTC-SSCEEEEETTTSCHHHHHHHHHHHHHHGG
T ss_pred HHH----HHHHHHHHhhc-CCCEEEEECCCCCHHHHHHHHHHHHhCCC
Confidence 211 12222222222 35889998774 55666677776666543
No 51
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=99.20 E-value=3.9e-12 Score=114.06 Aligned_cols=156 Identities=16% Similarity=0.154 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccH-HHHHHHHHHhhcCCcee
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT-ELLLSDMEKLKHGQAVS 111 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~-~~l~~~l~~l~~g~~i~ 111 (473)
.+|+|+|++||||||+|+.|++.++ +.+++.|++++......... .|...+...+ +.-.+.+..+.
T Consensus 5 ~~i~i~G~~GsGKsTla~~La~~l~---~~~~d~d~~~~~~~g~~~~~----~~~~~g~~~~~~~~~~~~~~l~------ 71 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLARALAKDLD---LVFLDSDFLIEQKFNQKVSE----IFEQKRENFFREQEQKMADFFS------ 71 (175)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHHHHHTSCHHH----HHHHHCHHHHHHHHHHHHHHHT------
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcC---CCEEcccHHHHHHcCCCHHH----HHHHcCHHHHHHHHHHHHHHHH------
Confidence 3699999999999999999999998 89999998763210000000 0000000000 00011111111
Q ss_pred ccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEEecChhHHHHHhhhccccccCC--ChHHHHHHHH
Q 035513 112 IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGR--DIEDVLDQYA 189 (473)
Q Consensus 112 ~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~--~~~~~~~~~~ 189 (473)
.....++..|.....+..+ ...+.+|||++|.+++.+|+.+|....+.. ..+.+...|.
T Consensus 72 ------------------~~~~~vi~~g~~~~~~~~l-~~~~~~i~l~~~~e~~~~R~~~r~~~~r~~~~~~~~i~~~~~ 132 (175)
T 1via_A 72 ------------------SCEKACIATGGGFVNVSNL-EKAGFCIYLKADFEYLKKRLDKDEISKRPLFYDEIKAKKLYN 132 (175)
T ss_dssp ------------------TCCSEEEECCTTGGGSTTG-GGGCEEEEEECCHHHHTTCCCGGGTTTSCTTCCHHHHHHHHH
T ss_pred ------------------ccCCEEEECCCCEehhhHH-hcCCEEEEEeCCHHHHHHHHhcccCCCCCCcccHHHHHHHHH
Confidence 1123333334222111112 234789999999999999988773112222 1334444444
Q ss_pred hhcccchhhhcCCccccccEecccC-CCchhhhhhhhhee
Q 035513 190 RFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHI 228 (473)
Q Consensus 190 ~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I 228 (473)
.+. +.| ...++++|+++ .+.++..+.+++.+
T Consensus 133 ~r~-~~y-------~~~~~~~Idt~~~~~eev~~~I~~~l 164 (175)
T 1via_A 133 ERL-SKY-------EQKANFILNIENKNIDELLSEIKKVI 164 (175)
T ss_dssp HHH-HHH-------HHHCSEEEECTTCCHHHHHHHHHHHH
T ss_pred HHH-HHH-------HhcCCEEEECCCCCHHHHHHHHHHHH
Confidence 332 222 34579999877 34444445554443
No 52
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=99.20 E-value=9.4e-12 Score=115.43 Aligned_cols=181 Identities=19% Similarity=0.259 Sum_probs=92.5
Q ss_pred CCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHH
Q 035513 24 STTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 24 ~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~ 103 (473)
.++...+++++|.|.|||||||||+|+.|+++++ +.+||++++++.. ... . + +.-.+.-..
T Consensus 21 ~~~~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g---~~hIstGdllR~~-------i~~---~---t---~lg~~~~~~ 81 (217)
T 3umf_A 21 MTDQKLAKAKVIFVLGGPGSGKGTQCEKLVQKFH---FNHLSSGDLLRAE-------VQS---G---S---PKGKELKAM 81 (217)
T ss_dssp ---CCTTSCEEEEEECCTTCCHHHHHHHHHHHHC---CEEECHHHHHHHH-------HTT---C---C---HHHHHHHHH
T ss_pred ccchhccCCcEEEEECCCCCCHHHHHHHHHHHHC---CceEcHHHHHHHH-------HHc---C---C---chHHHHHHH
Confidence 3455667889999999999999999999999998 9999998877421 100 0 0 000111111
Q ss_pred hhcCCceeccccccccccccccccccCCCcEEEEecccccCCh--hh---hhccCeEEEEecChhHHHHHhhhccccc-c
Q 035513 104 LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RV---RDLMSMKIFVDTDSDVRLSRRIQRDTVE-R 177 (473)
Q Consensus 104 l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~---~~~~Dl~I~L~~~~e~~~~R~~~R~~~~-~ 177 (473)
+..|+-+.-.....-...++. .......-+|+||..--..+ .+ ....|.+|++++|.++..+|+..|.... |
T Consensus 82 ~~~G~lVpde~~~~lv~~~l~--~~~~~~~g~ilDGfPRt~~Qa~~l~~~~~~~~~vi~l~v~~e~~~~Rl~~R~~~~~R 159 (217)
T 3umf_A 82 MERGELVPLEVVLALLKEAMI--KLVDKNCHFLIDGYPRELDQGIKFEKEVCPCLCVINFDVSEEVMRKRLLKRAETSNR 159 (217)
T ss_dssp HHHTCCCCHHHHHHHHHHHHH--HHTTTCSEEEEETBCSSHHHHHHHHHHTCCCSEEEEEECCHHHHHHHHSCC------
T ss_pred HhcCCCCCHHHHHHHHHHHHh--hccccccCcccccCCCcHHHHHHHHHhCCccCEEEeccCCHHHHHHHHhcccccCCC
Confidence 222222110000000000110 00123456899986532221 11 2245799999999999999999885321 2
Q ss_pred CCChHH-H---HHHHHhhcccchhhhcCCcccccc-EecccCCCchhhhhhhhheee
Q 035513 178 GRDIED-V---LDQYARFVKPSFEEFILPSKKYAD-IIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 178 ~~~~~~-~---~~~~~~~~~~~~~~~i~~~~~~ad-~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.++.++ + ++.|.+...|..+.| .+... +.|+.+++.++..+++.+.++
T Consensus 160 ~DD~~e~i~~Rl~~Y~~~t~pl~~~Y----~~~~~l~~Idg~~~~eeV~~~I~~~l~ 212 (217)
T 3umf_A 160 VDDNEETIVKRFRTFNELTKPVIEHY----KQQNKVITIDASGTVDAIFDKVNHELQ 212 (217)
T ss_dssp CHHHHHHHHHHHHHHHHHTHHHHHHH----HTTTCEEEEETTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHH----HhcCCEEEEECCCCHHHHHHHHHHHHH
Confidence 222222 2 233444444443333 33333 345544444444555554443
No 53
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=99.20 E-value=1.4e-11 Score=111.75 Aligned_cols=35 Identities=23% Similarity=0.268 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
+|+|+|++||||||+++.|++.++..++.++++|.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d~ 36 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYRE 36 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 69999999999999999999998433578888875
No 54
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=99.19 E-value=1.9e-12 Score=117.54 Aligned_cols=171 Identities=18% Similarity=0.242 Sum_probs=87.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
+++.+|.|+|++||||||+++.|++.++ +.+++.|.+...+. .. ..+.. ..+...........+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~---~~~i~~D~~~~~~~----~~---~~~~~-~~~~~~~~~~~~~~~~~--- 68 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLR---LPLLSKDAFKEVMF----DG---LGWSD-REWSRRVGATAIMMLYH--- 68 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHT---CCEEEHHHHHHHHH----HH---HCCCS-HHHHHHHHHHHHHHHHH---
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcC---CeEecHHHHHHHHH----Hh---cCccc-hHHHHHhhHHHHHHHHH---
Confidence 4578999999999999999999999987 78888877642111 11 11111 11100000000000000
Q ss_pred eeccccccccccccccccccCCCcEEEEecccccCC--hhh---hh---ccCeEEEEecChhHHHHHhhhcccc-ccC--
Q 035513 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD--PRV---RD---LMSMKIFVDTDSDVRLSRRIQRDTV-ERG-- 178 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~--~~~---~~---~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~-- 178 (473)
... ..+.....+|+|+.+.... ..+ .. ..+++||+++|++++++|+.+|... .+.
T Consensus 69 ------------~~~--~~l~~g~~vi~d~~~~~~~~~~~~~~l~~~~~~~~~~v~l~~~~e~~~~R~~~R~~~~~r~~~ 134 (193)
T 2rhm_A 69 ------------TAA--TILQSGQSLIMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDVLVERILSRIAQGARHPG 134 (193)
T ss_dssp ------------HHH--HHHHTTCCEEEEECCCHHHHHHHHHHHHHHSCCEEEEEEEECCHHHHHHHHHHHHHTTCC---
T ss_pred ------------HHH--HHHhCCCeEEEecCCCCHHHHHHHHHHHHhcCCeEEEEEEeCCHHHHHHHHHHhcCccccCcc
Confidence 000 0011234567776552100 011 11 2358999999999999999888531 111
Q ss_pred CChHHHHH--HHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 179 RDIEDVLD--QYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 179 ~~~~~~~~--~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
........ ++... ++.+...+...++++|+++...++.++++++.|...+
T Consensus 135 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~Idt~~~~~~~~~~i~~~i~~~l 186 (193)
T 2rhm_A 135 HCDDRSPADLELVRS----RGDIPPLPLGGPLLTVDTTFPEQIDMNAIVQWVRQHL 186 (193)
T ss_dssp -----CHHHHHHHHH----SCCCCCCCCCSCEEEEECSSGGGCCHHHHHHHHHHHH
T ss_pred cccCccCcchhhHHH----HhcCCCccCCCCEEEEeCCCCcccCHHHHHHHHHHHH
Confidence 00011111 12111 2222112223588999887655566677777666544
No 55
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=99.19 E-value=1.8e-12 Score=115.23 Aligned_cols=34 Identities=26% Similarity=0.287 Sum_probs=31.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+|+|+|++||||||+|+.|++.++ +.+++.|++.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~---~~~i~~d~~~ 35 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLN---IPFYDVDEEV 35 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHT---CCEEEHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC---CCEEECcHHH
Confidence 699999999999999999999987 8899998775
No 56
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=99.18 E-value=1.5e-11 Score=110.71 Aligned_cols=42 Identities=19% Similarity=0.124 Sum_probs=35.0
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
++.+.++.+|+|+|++||||||+++.|++.++ +.+++.|+++
T Consensus 5 ~~~~~~~~~i~i~G~~GsGKst~~~~l~~~~~---~~~~~~d~~~ 46 (180)
T 3iij_A 5 SPEFMLLPNILLTGTPGVGKTTLGKELASKSG---LKYINVGDLA 46 (180)
T ss_dssp -CTTCCCCCEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHH
T ss_pred CcccccCCeEEEEeCCCCCHHHHHHHHHHHhC---CeEEEHHHHH
Confidence 34444566899999999999999999999997 8999998765
No 57
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=99.18 E-value=1.1e-11 Score=115.07 Aligned_cols=35 Identities=14% Similarity=0.283 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|+|+|++||||||+|+.|++.++ +.+++.|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r 36 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYG---IPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS---CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEEeHHHHHH
Confidence 589999999999999999999987 89999988764
No 58
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=99.17 E-value=6.2e-12 Score=123.80 Aligned_cols=146 Identities=18% Similarity=0.205 Sum_probs=85.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC--CCCCCHHH----HhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF--YHSLTDEK----LQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~--~~~~~~~~----~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
.+|+|+|++||||||+|+.|++.++ ..++++|++ |+.+.... .++..... ..+..+..
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~---~~iis~Ds~qvYr~~~i~Takp~~eE~~~v~-------------hhl~di~~ 71 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN---GEIISGDSMQVYQGMDIGTAKVTTEEMEGIP-------------HYMIDILP 71 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT---EEEEECCSSTTBTTCCTTTTCCCTTTTTTCC-------------EESSSCBC
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC---CceeccccccccccccccccCCCHHHHHHHH-------------HHHHHHhC
Confidence 6899999999999999999999998 899999998 76653211 01110000 00000111
Q ss_pred CCceeccccccccccccccc-cccCCCcEEEEecccccCChhhhhccCeEEEEe-cChh--HHHHHhhhccccccCCChH
Q 035513 107 GQAVSIPDYDFKSHKRKQQS-RLINPSDVFILEGILVLHDPRVRDLMSMKIFVD-TDSD--VRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~~-~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L~-~~~e--~~~~R~~~R~~~~~~~~~~ 182 (473)
+.. .++.+++....+.... ....+..+|+++|.. ++.+.+...+| +|++ ++.+ +++.|.+.| ..++|.
T Consensus 72 ~~~-~~~~~dF~~~a~~~i~~i~~~g~~~IlvGGt~-ly~~~l~~~l~--~~~~~~d~~~~~Rlrrrl~r-~~~~G~--- 143 (340)
T 3d3q_A 72 PDA-SFSAYEFKKRAEKYIKDITRRGKVPIIAGGTG-LYIQSLLYNYA--FEDESISEDKMKQVKLKLKE-LEHLNN--- 143 (340)
T ss_dssp TTS-CCCHHHHHHHHHHHHHHHHHTTCEEEEECCCH-HHHHHHHBCSC--CC---CCHHHHHHHHHHHHT-TSSSCH---
T ss_pred Ccc-ccCHHHHHHHHHHHHHHHHhCCCcEEEECChh-hhHHHHHhccc--ccCCCCChHHHHHHHHHHHH-HHhcCH---
Confidence 111 1222222222111111 112345677777766 44455555555 7788 8888 667777777 666663
Q ss_pred HHHHHHHhhcccchhhhcCC
Q 035513 183 DVLDQYARFVKPSFEEFILP 202 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~ 202 (473)
..+.++.....|.+..++.|
T Consensus 144 ~~l~~~L~~vdP~~a~~I~p 163 (340)
T 3d3q_A 144 NKLHEYLASFDKESAKDIHP 163 (340)
T ss_dssp HHHHHHHHHHCHHHHHHSCT
T ss_pred HHHHHHHHhhCcHHHhhcCc
Confidence 46778888888888877766
No 59
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=99.17 E-value=1.5e-11 Score=111.08 Aligned_cols=39 Identities=13% Similarity=0.133 Sum_probs=33.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.++.+|+|+|++||||||+++.|++.++ +.+++.|++++
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l~---~~~i~~d~~~~ 40 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQELG---FKKLSTGDILR 40 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHHT---CEEECHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHHH
Confidence 3567899999999999999999999987 89999887663
No 60
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=99.16 E-value=7.3e-12 Score=116.12 Aligned_cols=35 Identities=20% Similarity=0.346 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|+|+|++||||||+|+.|++.++ +.+++.|++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~---~~~i~~d~~~r 36 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYE---IPHISTGDMFR 36 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC---CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CcEeeHHHHHH
Confidence 589999999999999999999987 88999988764
No 61
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=99.15 E-value=2e-11 Score=115.70 Aligned_cols=123 Identities=12% Similarity=0.042 Sum_probs=70.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
++++++|+|+|++||||||+|+.|++.++ +.+++.|++.+..... +......+.+ .+..+.
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g---~~~is~~~~~r~~~~~-------------~~~~g~~i~~---~~~~g~ 86 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHC---YCHLSTGDLLREAAEK-------------KTELGLKIKN---IINEGK 86 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHTTS-------------SSHHHHHHHH---HHHTTC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEEecHHHHHHHHhc-------------cchHHHHHHH---HHhcCC
Confidence 34688999999999999999999999997 8999998776431100 0000001111 111111
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCCh--hhh-------hccCeEEEEecChhHHHHHhhhcc
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP--RVR-------DLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~--~~~-------~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
.+....+......++.. ......+++||....... .+. ..+|.+|++++|++++++|+..|.
T Consensus 87 ~~~~~~~~~~~~~~l~~---~~~~~~~ildg~p~~~~q~~~l~~~l~~~~~~~d~vi~l~~p~e~~~~Rl~~R~ 157 (243)
T 3tlx_A 87 LVDDQMVLSLVDEKLKT---PQCKKGFILDGYPRNVKQAEDLNKLLQKNQTKLDGVFYFNVPDEVLVNRISGRL 157 (243)
T ss_dssp CCCHHHHHHHHHHHTTS---GGGSSEEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred CCcHHHHHHHHHHHHhc---ccccCCEEecCCCCcHHHHHHHHHHHHHcCCCCceEEEEeCCHHHHHHHHHcCC
Confidence 11100000000000100 112456888984332211 111 236899999999999999999885
No 62
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=99.13 E-value=3.8e-10 Score=107.87 Aligned_cols=196 Identities=15% Similarity=0.174 Sum_probs=99.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE--ecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV--NQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i--s~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
.++.+|+|+|++||||||+|+.|++.+...++.++ +.|.+...+. . |.... ...+.......
T Consensus 2 ~~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~--------~--~~~~~---e~~~~~~~~~~--- 65 (260)
T 3a4m_A 2 GDIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFP--------V--WKEKY---EEFIKKSTYRL--- 65 (260)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSS--------S--CCGGG---HHHHHHHHHHH---
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHh--------h--hhHHH---HHHHHHHHHHH---
Confidence 45789999999999999999999998543335554 7765542221 1 21110 01111111000
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCC--hhhhh------ccCeEEEEecChhHHHHHhhhccccccCC
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD--PRVRD------LMSMKIFVDTDSDVRLSRRIQRDTVERGR 179 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~--~~~~~------~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~ 179 (473)
+. ..+.. ..+|+|+...... ..+.. ..+++||+++|++++++|..+|.. ..
T Consensus 66 ---------------i~--~~l~~-~~vIiD~~~~~~~~~~~l~~~a~~~~~~~~vi~l~~~~e~~~~R~~~R~~---~~ 124 (260)
T 3a4m_A 66 ---------------ID--SALKN-YWVIVDDTNYYNSMRRDLINIAKKYNKNYAIIYLKASLDVLIRRNIERGE---KI 124 (260)
T ss_dssp ---------------HH--HHHTT-SEEEECSCCCSHHHHHHHHHHHHHTTCEEEEEEEECCHHHHHHHHHHTTC---SS
T ss_pred ---------------HH--HHhhC-CEEEEeCCcccHHHHHHHHHHHHHcCCCEEEEEEeCCHHHHHHHHHhCCC---CC
Confidence 00 01123 6788887443211 11221 136899999999999999988841 22
Q ss_pred ChHHHHHHHHhhcccchhhhcCCc-cccccEecccCCCchhhhhhhhheeeeccccccccccccceeeccccceeeeeee
Q 035513 180 DIEDVLDQYARFVKPSFEEFILPS-KKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMHT 258 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~-~~~ad~vI~~~~~~~~~i~~i~~~I~~~l~~~~l~~~~~~v~v~~~~~~~~~~~t 258 (473)
. .+.+...... |+.....+ +..++++|+.+.. ..++++.+.|...+..+. +-..
T Consensus 125 ~-~~~l~~~~~~----~e~~~~~~~~~~~~~~Id~~~~--~~~~ei~~~I~~~l~~~~------~~~~------------ 179 (260)
T 3a4m_A 125 P-NEVIKKMYEK----FDEPGKKYKWDEPFLIIDTTKD--IDFNEIAKKLIEKSKEIP------KFYV------------ 179 (260)
T ss_dssp C-HHHHHHHHHH----CCCTTSSCGGGCCSEEEETTSC--CCHHHHHHHHHHHHTSCC------CC--------------
T ss_pred C-HHHHHHHHHH----hcCccccCCCCCCEEEEeCCCC--CCHHHHHHHHHhcccCCC------Cccc------------
Confidence 2 2333222111 11111111 2458899987641 124444444444443321 0000
Q ss_pred eeecCCCCchhhHHHHHHHHHHHHHHHHCC
Q 035513 259 LIRDVTTTTHDFVFYADRLIRLVVEHGLGH 288 (473)
Q Consensus 259 ~lRd~~t~~~~fr~~~~~l~~~l~~ea~~~ 288 (473)
+.+..++...|.+-+|...+-++.+++..
T Consensus 180 -~~~~~~~~~~~l~~lD~~~~~iv~~~~~~ 208 (260)
T 3a4m_A 180 -LEENKNKNNNISDKIDKETRKIVSEYIKS 208 (260)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHH
T ss_pred -ccCCCCCCccHHHHHHHHHHHHHHHHHHh
Confidence 11223455578888888888877777664
No 63
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=99.13 E-value=5e-11 Score=106.21 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=32.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
++|+|+|++||||||+|+.|++.++ +.+++.|+++
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg---~~~id~d~~~ 37 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALG---YEFVDTDIFM 37 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHT---CEEEEHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhC---CcEEcccHHH
Confidence 4799999999999999999999997 8999998775
No 64
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=99.12 E-value=1.2e-11 Score=110.34 Aligned_cols=155 Identities=15% Similarity=0.181 Sum_probs=77.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHH----HHHHHHhhcC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELL----LSDMEKLKHG 107 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l----~~~l~~l~~g 107 (473)
+.+|+|+|++||||||+++.|++.++ +.+++.|++.+... ..... +.|. .+....+ ...+..+.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~---~~~id~d~~~~~~~---~~~i~-~i~~---~~g~~~~~~~~~~~l~~l~-- 71 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLN---MEFYDSDQEIEKRT---GADVG-WVFD---LEGEEGFRDREEKVINELT-- 71 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTT---CEEEEHHHHHHHHH---TSCHH-HHHH---HHHHHHHHHHHHHHHHHHH--
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhC---CCEEeccHHHHHHh---CcCHH-HHHH---HHhHHHHHHHHHHHHHHHH--
Confidence 45799999999999999999999987 78888886642100 00000 0000 0000000 01111111
Q ss_pred CceeccccccccccccccccccCCCcEEEEecccccCChh---hhhccCeEEEEecChhHHHHHhhhccccc--c-CCC-
Q 035513 108 QAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR---VRDLMSMKIFVDTDSDVRLSRRIQRDTVE--R-GRD- 180 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~---~~~~~Dl~I~L~~~~e~~~~R~~~R~~~~--~-~~~- 180 (473)
....+++..|........ +...+++++|++++++++.+|+.+|.... . ...
T Consensus 72 ----------------------~~~~~v~~~~~~~~~~~~~~~~l~~~~~~i~l~~~~~~l~~R~~~r~~r~~~~~~~~~ 129 (173)
T 1kag_A 72 ----------------------EKQGIVLATGGGSVKSRETRNRLSARGVVVYLETTIEKQLARTQRDKKRPLLHVETPP 129 (173)
T ss_dssp ----------------------TSSSEEEECCTTGGGSHHHHHHHHHHSEEEECCCCHHHHHSCC------CCSSSSCCC
T ss_pred ----------------------hCCCeEEECCCeEEecHHHHHHHHhCCEEEEEeCCHHHHHHHHhCCCCCCCCCCCCch
Confidence 112333332211111221 22456899999999999999998874221 1 112
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccC-CCchhhhhhhhhee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRG-GDNDVAIDLIVQHI 228 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~-~~~~~~i~~i~~~I 228 (473)
.+.+..++..+. +.| ...+|++|+++ .+.++..+++.+.+
T Consensus 130 ~~~~~~~~~~r~-~~~-------~~~a~~~id~~~~~~~~~~~~i~~~l 170 (173)
T 1kag_A 130 REVLEALANERN-PLY-------EEIADVTIRTDDQSAKVVANQIIHML 170 (173)
T ss_dssp HHHHHHHHHHHH-HHH-------HHHCSEEC-----CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHH-------HhhCCEEEECCCCCHHHHHHHHHHHH
Confidence 344444444332 222 45689999977 34455555555444
No 65
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, salvage of nucleosides and nucleotides; HET: GOL; 1.98A {Bacillus anthracis} SCOP: c.61.1.0
Probab=99.12 E-value=3.5e-10 Score=102.18 Aligned_cols=119 Identities=13% Similarity=0.238 Sum_probs=95.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-IKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~ 344 (473)
+..+|+..+++|+..+... .+ + ++.++|+++++|..+...+.+.+.- ..++++.++
T Consensus 14 ~~~~i~~~i~~La~~I~~~----~~---------------~----~~~vvVgi~~gG~~~a~~la~~L~~p~~i~~i~~~ 70 (186)
T 3o7m_A 14 SEEQLQEKVKELALQIERD----FE---------------G----EEIVVIAVLKGSFVFAADLIRHIKNDVTIDFISAS 70 (186)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TT---------------T----SCEEEEEETTTTHHHHHHHHTTCCSCEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHH----cC---------------C----CCCEEEEECcchHHHHHHHHHHhCCCCceEEEEEE
Confidence 5568999999888877654 11 1 3568999999999999999999874 578889885
Q ss_pred E--cC--CCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHH
Q 035513 345 R--EG--NSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGI 409 (473)
Q Consensus 345 r--~~--~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~ 409 (473)
+ +. ++........++.+++|++|+|+|++++||+|+.++++.|+++|+ +.|.+++++..|++-
T Consensus 71 ~Y~~~~~~~~~v~i~~~~~~~~~gk~VliVDDii~TG~Tl~~~~~~l~~~g~--~~v~~~~l~~k~~~~ 137 (186)
T 3o7m_A 71 SYGNQTETTGKVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHKP--KALKFCTLLDKPERR 137 (186)
T ss_dssp ECC-------CEEEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCC--SEEEEEEEEECGGGC
T ss_pred EecCCCcccCcEEEEecCCCCCCcCEEEEEcCeeCCcHHHHHHHHHHHhcCC--cEEEEEEEEECCCCC
Confidence 5 22 223334456788889999999999999999999999999999997 789999999999873
No 66
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=99.12 E-value=4.6e-10 Score=105.22 Aligned_cols=182 Identities=15% Similarity=0.107 Sum_probs=91.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHH--HHHHHHHhhc
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTEL--LLSDMEKLKH 106 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~--l~~~l~~l~~ 106 (473)
+.++.+|+|.|++||||||+++.|++.++. +..++....-.. +. ....+..+. .....++... +.-.......
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p~~--~~-~g~~i~~~~-~~~~~~~~~~~~ll~~a~r~~~ 97 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREPGG--VP-TGEEIRKIV-LEGNDMDIRTEAMLFAASRREH 97 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTTTT--CH-HHHHHHHHT-TC---CCHHHHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCCCC--Cc-hHHHHHHHH-hCCCCCCHHHHHHHHHHHHHHH
Confidence 347889999999999999999999999975 555554422111 11 011111111 1111011110 0000001100
Q ss_pred CCceeccccccccccccccccccCCCcEEEEe----------cccccCChhh----------hhccCeEEEEecChhHHH
Q 035513 107 GQAVSIPDYDFKSHKRKQQSRLINPSDVFILE----------GILVLHDPRV----------RDLMSMKIFVDTDSDVRL 166 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlE----------G~~~l~~~~~----------~~~~Dl~I~L~~~~e~~~ 166 (473)
-... +. ..+....++|+| |......... ....|++|||++|++++.
T Consensus 98 ~~~~------------i~--~~l~~g~~Vi~DRy~~s~~ayqg~~r~~~~~~~~~l~~~~~~~~~pd~vi~L~~~~e~~~ 163 (229)
T 4eaq_A 98 LVLK------------VI--PALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGR 163 (229)
T ss_dssp CCCC------------CH--HHHHTTCEEEEECCHHHHCCCCCCCSCSCHHHHHHHHHHHHTTCCCSEEEEEECCHHHHH
T ss_pred HHHH------------HH--HHHHCCCEEEECCchhHHHHHHHhhcCCCHHHHHHHHHHHhcCCCCCEEEEEeCCHHHHH
Confidence 0000 00 011234567777 5432222211 124689999999999999
Q ss_pred HHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 167 SRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 167 ~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
+|+.+|... .++. +.....|.++....|..+...+ +...++|+++.+.++..+++.+.+...+
T Consensus 164 ~R~~~R~~~-~dr~-e~~~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eev~~~I~~~l~~~l 226 (229)
T 4eaq_A 164 ERIIKNSRD-QNRL-DQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIKYL 226 (229)
T ss_dssp HHHHHC------CC-CHHHHHHHHHHHHHHHHHTTTC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCCC-ccch-hhhhHHHHHHHHHHHHHHHHhC-CCCEEEEeCCCCHHHHHHHHHHHHHHHh
Confidence 999988431 1221 1122334444455555553322 2245678777666667777776666544
No 67
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine phosphoribosyltransferase, 2-(N-morphol ethanesulfonic acid (MES), IDP01892; HET: MES; 1.95A {Bacillus anthracis str} PDB: 3h83_A* 3kb8_A*
Probab=99.11 E-value=4.9e-10 Score=102.51 Aligned_cols=118 Identities=14% Similarity=0.254 Sum_probs=96.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-IKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~ 344 (473)
+..+|+..+++|+..+.+. .+ + ++.++|+++++|..+...+.+.+.. .+++++..+
T Consensus 36 s~~~i~~~i~~LA~~I~~~----~~---------------~----~~~vVVgi~~GG~~~a~~La~~L~~p~~~~~i~~~ 92 (204)
T 3hvu_A 36 SEEQIQEKVLELGAIIAED----YK---------------N----TVPLAIGVLKGAMPFMADLLKRTDTYLEMDFMAVS 92 (204)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TS---------------S----SCCEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHH----cC---------------C----CCCEEEEeCcchHHHHHHHHHHhCCCcceEEEEEE
Confidence 4568999999888877653 11 1 3568999999999999999999874 578888886
Q ss_pred E--cC-C-CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 345 R--EG-N-SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 345 r--~~-~-~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
| ++ . +........+|.+++|++|+|+|+|++||+|+.++++.|+++|+ +.|.+++++..+++
T Consensus 93 ~Y~~~~~~~~~v~i~~~l~~~~~gk~VliVDDii~TG~Tl~~~~~~l~~~g~--~~v~~~~l~~k~~~ 158 (204)
T 3hvu_A 93 SYGHSTVSTGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRKA--KSVKIVTLLDKPTG 158 (204)
T ss_dssp ECSGGGTTSCCEEEEECCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHHTTC--SEEEEEEEEECGGG
T ss_pred EecCCCccCCcEEEEcCCCccCCCCEEEEEeceeCchHHHHHHHHHHHHcCC--CEEEEEEEEECCCC
Confidence 5 32 2 23334456788889999999999999999999999999999997 78999999999986
No 68
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=99.10 E-value=1.5e-10 Score=105.22 Aligned_cols=35 Identities=20% Similarity=0.271 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
+|+|+|++||||||+++.|++.+...++.++..+.
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 69999999999999999999998433477776644
No 69
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=99.09 E-value=1.8e-10 Score=103.07 Aligned_cols=38 Identities=24% Similarity=0.346 Sum_probs=31.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.+|.|+|+|||||||+++.|++.++ .++..++.|.++
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~-~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP-EPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS-SCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC-CCeEEeccchHh
Confidence 45899999999999999999999986 235566788765
No 70
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=99.09 E-value=8e-11 Score=106.58 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=31.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFY 70 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~ 70 (473)
++|+|+|++||||||+++.|++.++..+ +.+++.|+++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~ 41 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFM 41 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHH
Confidence 6899999999999999999999987433 6777766554
No 71
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=99.08 E-value=5.7e-11 Score=109.24 Aligned_cols=183 Identities=17% Similarity=0.191 Sum_probs=92.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
+.++.+|+|+|+|||||||+++.|++.++. .+. .+....-+...... .....+.|.+ .+.+.+. +..+.
T Consensus 9 ~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~-~~~-~~~~~ttR~~~~~e-~~g~~~~~~~-----~~~~~~~---~~~~~ 77 (204)
T 2qor_A 9 MARIPPLVVCGPSGVGKGTLIKKVLSEFPS-RFR-FSISCTTRNKREKE-TNGVDYYFVD-----KDDFERK---LKEGQ 77 (204)
T ss_dssp CCCCCCEEEECCTTSCHHHHHHHHHHHCTT-TEE-ECCEEECSCCCTTC-CBTTTEEECC-----HHHHHHH---HHTTC
T ss_pred cccCCEEEEECCCCCCHHHHHHHHHHhCcc-cee-eeeeecCCCCCCCC-CCCcceeeCC-----HHHHHHH---HHcCC
Confidence 446678999999999999999999998752 122 21111111100000 0001222322 2222222 23343
Q ss_pred ceecccccccccccccc--ccccCCCcEEEEecccccCChhhhhcc---C-eEEEEe-cChhHHHHHhhhccccccCCCh
Q 035513 109 AVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRDLM---S-MKIFVD-TDSDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~~~---D-l~I~L~-~~~e~~~~R~~~R~~~~~~~~~ 181 (473)
.+....+....+..... ...+.....+|+|+.+... ..+...+ + ++|||+ +|.+++.+|+.+|.. .+.
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~l~~~~~~~~~~~i~l~~~s~e~l~~Rl~~R~~----~~~ 152 (204)
T 2qor_A 78 FLEFDKYANNFYGTLKSEYDLAVGEGKICLFEMNINGV-KQLKESKHIQDGIYIFVKPPSIDILLGRLKNRNT----EKP 152 (204)
T ss_dssp EEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHCSSCSCCEEEEEECSCHHHHHHHHHTCTT----SCH
T ss_pred CEEeHHhCCCeecCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCCCeEEEEEcCCCHHHHHHHHHHcCC----CCH
Confidence 33333332222211110 1123346678887533221 2233333 3 789998 899999999987742 133
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
+.+..++.....+.... +...+|++|+|+ +.++.++++.+.|...+
T Consensus 153 ~~i~~rl~~~~~~~~~~----~~~~~d~vi~n~-~~e~~~~~i~~~i~~~~ 198 (204)
T 2qor_A 153 EEINKRMQELTREMDEA----DKVGFNYFIVND-DLARTYAELREYLLGSY 198 (204)
T ss_dssp HHHHHHHHHHHHHHHHH----HHHTCSEEEECS-SHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHh----hhccCcEEEECc-CHHHHHHHHHHHHHHHh
Confidence 33333333221111100 246689998877 66777777777776543
No 72
>2ywu_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 2ywt_A* 2yws_A* 3acb_A 3acc_A* 3acd_A*
Probab=99.08 E-value=4.5e-10 Score=101.11 Aligned_cols=119 Identities=13% Similarity=0.168 Sum_probs=92.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-CceeeEEEE
Q 035513 265 TTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-GIKIGKILI 343 (473)
Q Consensus 265 t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~ 343 (473)
-+..+++..+++|+..+.+. +. .++.++|+++++|..+..++.+.++ .+.++++..
T Consensus 14 i~~~~i~~~i~~La~~I~~~----~~-------------------~~~~vvVgi~~gg~~~a~~la~~L~~p~~~~~i~~ 70 (181)
T 2ywu_A 14 ISAEAIKKRVEELGGEIARD----YQ-------------------GKTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAI 70 (181)
T ss_dssp BCHHHHHHHHHHHHHHHHHH----TT-------------------TCCCEEEEEETTTHHHHHHHHTTCCSCCEEEEEEE
T ss_pred ECHHHHHHHHHHHHHHHHHH----cC-------------------CCCCEEEEECchhHHHHHHHHHHcCCCceEEEEEE
Confidence 35567888888888777653 11 1357899999999999999999997 457788876
Q ss_pred EE--cCC--CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 344 HR--EGN--SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 344 ~r--~~~--~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
++ ++. +........++.+++|++|+|+|||++||+|+.++++.|+++|+ ++|.+++++..+++
T Consensus 71 ~~y~~~~~~~~~v~i~~~~~~~~~gk~vliVDDii~TG~Tl~~~~~~l~~~g~--~~v~~~~l~~k~~~ 137 (181)
T 2ywu_A 71 SSYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKP--ASVRVAALLSKPSR 137 (181)
T ss_dssp C------------CEEECCCSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCC--SEEEEEEEEECGGG
T ss_pred EEecCCccccCcEEEEecCCCCCCCCEEEEECCeeCChHHHHHHHHHHHhcCC--cEEEEEEEEECCCC
Confidence 43 332 22233345678889999999999999999999999999999997 78999999999886
No 73
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Vibrio cholerae} SCOP: c.61.1.1 PDB: 1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Probab=99.08 E-value=4.2e-10 Score=100.93 Aligned_cols=118 Identities=18% Similarity=0.218 Sum_probs=92.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecce-eeEEEeeccCchhHHHHHhhcCC-ceeeEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRR-LCGISIIRSGESMENALRACCKG-IKIGKILI 343 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~-~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~ 343 (473)
+..+++..+++|+..+.... + ..+ .++|+|+|+|.++...+.+.+.. ..++++.+
T Consensus 10 s~~~i~~~i~~La~~I~~~~----~-------------------~~~~~vvVgi~~gG~~~a~~la~~L~~~~~~~~i~~ 66 (177)
T 3ohp_A 10 SEQEVAQRIRELGQQITEHY----Q-------------------GSSDLVLVGLLRGSFVFMADLARQIHLTHQVDFMTA 66 (177)
T ss_dssp CHHHHHHHHHHHHHHHHHHT----T-------------------TCSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHc----C-------------------CCCCeEEEEECcchHHHHHHHHHHcCCCceEEEEEE
Confidence 45578888888888776541 1 012 78999999999999999999874 57888876
Q ss_pred E--EcCC--CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 344 H--REGN--SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 344 ~--r~~~--~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+ |++. +.+......++.+++|++|+|+|++++||+|+.++++.|+++|+ +.|.+++++..+++
T Consensus 67 ~~y~~~~~~~~~v~i~~~~~~~~~gk~vliVDDii~TG~Tl~~~~~~l~~~g~--~~v~~~~l~~~~~~ 133 (177)
T 3ohp_A 67 SSYGNSMQSSRDVRILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALREP--KSIRICTLLDKPTR 133 (177)
T ss_dssp CC--------CCCCEEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCC--SEEEEEEEEECGGG
T ss_pred EEEcCCCccCCcEEEecCCCcccCCCEEEEEeeEeCcHHHHHHHHHHHHhcCC--cEEEEEEEEECCcc
Confidence 4 3432 23333456788889999999999999999999999999999998 78999999999976
No 74
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant, inhibitor design, selectivity; 1.70A {Thermoanaerobacter tengcongensis}
Probab=99.07 E-value=1.4e-10 Score=105.10 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=90.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-IKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~ 344 (473)
+..++...+.+|+..+... ++ .+..++|++.|+|.++...+.+.+.- ..++.+.+.
T Consensus 18 ~~~~i~~~~~~La~~i~~~----~~-------------------~~~~vvv~i~~gG~~~a~~la~~l~~p~~~~~i~~~ 74 (185)
T 2geb_A 18 TEEQLKAKVKELGEMITRD----YE-------------------GKDLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVS 74 (185)
T ss_dssp CHHHHHHHHHHHHHHHHHH----TT-------------------TSCEEEEEETTTTHHHHHHHHHTCCSCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHH----cC-------------------CCCCEEEEECcCcHHHHHHHHHHcCCCceeEEEEEE
Confidence 4446777777776665432 11 02467899999999999999999873 456777655
Q ss_pred EcCC----CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHH
Q 035513 345 REGN----SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGI 409 (473)
Q Consensus 345 r~~~----~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~ 409 (473)
+... +........++.+++|++|+|+||+++||+|+.++++.|+++|+ ++|.+++++..+++.
T Consensus 75 ~y~~~~~~~~~~~~~~~~~~~~~gk~VllVDDvi~TG~Tl~~a~~~L~~~Ga--~~V~~~~l~~~~~~~ 141 (185)
T 2geb_A 75 SYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRKP--RSLKICTILDKPERR 141 (185)
T ss_dssp ECSTTHHHHCCEEEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCC--SEEEEEEEEECGGGC
T ss_pred ecCCCCccCccEEEeccCCCCCCCCEEEEECCccCCHHHHHHHHHHHHhcCC--CEEEEEEEEECCCcc
Confidence 4321 12222345677789999999999999999999999999999998 789999999999874
No 75
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=99.06 E-value=1.8e-10 Score=105.30 Aligned_cols=75 Identities=19% Similarity=0.335 Sum_probs=44.0
Q ss_pred hccCeEEEEecChhHHHHHhhhccccccCCChHHHH-HHHHhhcccchhhhcCCcc-ccccEecccCCCchhhhhhhhhe
Q 035513 150 DLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL-DQYARFVKPSFEEFILPSK-KYADIIIPRGGDNDVAIDLIVQH 227 (473)
Q Consensus 150 ~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~-~~~~~~~~~~~~~~i~~~~-~~ad~vI~~~~~~~~~i~~i~~~ 227 (473)
...|++|||++|++++++|+.+|. +..+... ..+.......|..+...+. ..++++|+++.+.++..+.+.+.
T Consensus 123 ~~~d~vi~L~~~~e~~~~Rl~~R~-----r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~Id~~~~~~~v~~~I~~~ 197 (205)
T 2jaq_A 123 LSFDIVIYLRVSTKTAISRIKKRG-----RSEELLIGEEYWETLNKNYEEFYKQNVYDFPFFVVDAELDVKTQIELIMNK 197 (205)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHT-----CHHHHHSCHHHHHHHHHHHHHHHHHHTTTSCEEEEETTSCHHHHHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcC-----ChhhhcCcHHHHHHHHHHHHHHHHHccccCcEEEEECCCCHHHHHHHHHHH
Confidence 356899999999999999998773 2221110 1222333333433333334 56899998776444555555554
Q ss_pred ee
Q 035513 228 IL 229 (473)
Q Consensus 228 I~ 229 (473)
+.
T Consensus 198 l~ 199 (205)
T 2jaq_A 198 LN 199 (205)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 76
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=99.06 E-value=9.1e-11 Score=106.12 Aligned_cols=40 Identities=25% Similarity=0.305 Sum_probs=33.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYH 71 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~~ 71 (473)
+.+|+|+|++||||||+++.|++.++..+ +.+++.|++++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r 44 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMF 44 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHH
Confidence 46899999999999999999999987544 78888877653
No 77
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=99.06 E-value=1.1e-10 Score=107.27 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=30.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
++|+|.|++||||||+++.|+++++ +.+++ ++++
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg---~~~~D-~~~~ 40 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYN---IPLYS-KELL 40 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTT---CCEEC-HHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhC---cCEEC-HHHH
Confidence 5899999999999999999999998 88988 5444
No 78
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=99.05 E-value=5e-11 Score=111.04 Aligned_cols=38 Identities=24% Similarity=0.561 Sum_probs=33.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
++++|+|.|++||||||+++.|++.++ +.+++.|++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~---~~~i~~d~~~~ 41 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQ---LAHISAGDLLR 41 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHC---CEECCHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHH
Confidence 456899999999999999999999998 78888887764
No 79
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=99.04 E-value=1.5e-10 Score=107.65 Aligned_cols=38 Identities=13% Similarity=0.231 Sum_probs=34.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
++++|+|.|++||||||+|+.|++.++ +.++++|++++
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~ 40 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERFH---AAHLATGDMLR 40 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcC---ceEEehhHHHH
Confidence 457899999999999999999999997 89999988774
No 80
>3ozf_A Hypoxanthine-guanine-xanthine phosphoribosyltrans; transferase-transferase inhibitor complex; HET: HPA; 1.94A {Plasmodium falciparum fcr-3} PDB: 3ozg_A* 1cjb_A*
Probab=99.04 E-value=6.3e-10 Score=104.51 Aligned_cols=118 Identities=12% Similarity=0.104 Sum_probs=95.0
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-----------
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK----------- 334 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p----------- 334 (473)
+..+|+..+++|++.+.++.- .++.++|+|+++|..|...+.+.+.
T Consensus 65 ~~~~I~~~i~~LA~~I~~~~~-----------------------~~~~vVVgIl~gG~~fa~~La~~L~~~~v~~~rk~g 121 (250)
T 3ozf_A 65 PNGVIKNRIEKLAYDIKKVYN-----------------------NEEFHILCLLKGSRGFFTALLKHLSRIHNYSAVETS 121 (250)
T ss_dssp CHHHHHHHHHHHHHHHHHHHT-----------------------TCCEEEEEEETTTHHHHHHHHHHHHHHHHHHCCTTC
T ss_pred CHHHHHHHHHHHHHHHHHHcC-----------------------CCCCEEEEECcchHHHHHHHHHHhcccccccccccc
Confidence 556899999999888876531 1347899999999999999888764
Q ss_pred --CceeeEEEEEE--cCCC-CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 335 --GIKIGKILIHR--EGNS-GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 335 --~a~~g~i~~~r--~~~~-~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
.++++++.+++ ++.+ .+......++.+++|++|+|+|++++||+|+.++++.|+++|+ +.|.+++++..+++
T Consensus 122 klP~~v~fI~~ssY~~~~s~g~v~i~~~~~~~~~gk~VlIVDDii~TG~Tl~~~~~~L~~~g~--~~v~va~l~~k~~~ 198 (250)
T 3ozf_A 122 KPLFGEHYVRVKSYCNDQSTGTLEIVSEDLSCLKGKHVLIVEDIIDTGKTLVKFCEYLKKFEI--KTVAIACLFIKRTP 198 (250)
T ss_dssp CCCEEEEEEEEEEEETTEEEEEEEEECCCGGGGTTCEEEEEEEEESSSHHHHHHHHHHGGGCC--SEEEEEEEEEECCT
T ss_pred CCCceEEEEEEEEecCCcccCcEEEEcCCccccCCCEEEEEeceeCchHHHHHHHHHHHhcCC--CEEEEEEEEECCcc
Confidence 45688888754 3332 2333346777788999999999999999999999999999997 78999999999886
No 81
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=99.04 E-value=1.1e-10 Score=109.16 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.++++|+|.|++||||||+++.|++.++ +.+++.|++++
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~~~~ 43 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFE---LKHLSSGDLLR 43 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSS---SEEEEHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcC---CeEEechHHHH
Confidence 4567899999999999999999999987 89999988764
No 82
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=99.03 E-value=1e-10 Score=107.76 Aligned_cols=29 Identities=28% Similarity=0.364 Sum_probs=26.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++.+|+|+|++||||||+++.|++.++
T Consensus 7 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~ 35 (212)
T 2wwf_A 7 KKKGKFIVFEGLDRSGKSTQSKLLVEYLK 35 (212)
T ss_dssp CBCSCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred hhcCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 34577999999999999999999999876
No 83
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=99.03 E-value=9e-10 Score=100.82 Aligned_cols=178 Identities=15% Similarity=0.140 Sum_probs=84.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
.++++.+|+|+|++||||||+++.|+..++ ...++.....+..... ......+.|.++. .+..... .+
T Consensus 3 ~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-----~~~~~~~---~~ 70 (205)
T 3tr0_A 3 AMNKANLFIISAPSGAGKTSLVRALVKALA---EIKISISHTTRPKRPG-DQEGVDYFFIDET-----RFQAMVK---EG 70 (205)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHSS---SEEECCCEECSCCCTT-CCBTTTBEECCHH-----HHHHHHH---HT
T ss_pred cCCCCcEEEEECcCCCCHHHHHHHHHhhCC---CeEEeceeccCCCchh-HhcCceEEeccHH-----HHHHHHh---cC
Confidence 445667999999999999999999999865 2333332222111100 0111123333322 1211111 11
Q ss_pred Cceecccccccccccc--ccccccCCCcEEEEecccccCChhhhhccC--eEEEEec-ChhHHHHHhhhccccccCCChH
Q 035513 108 QAVSIPDYDFKSHKRK--QQSRLINPSDVFILEGILVLHDPRVRDLMS--MKIFVDT-DSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~--~~~~~~~~~~viIlEG~~~l~~~~~~~~~D--l~I~L~~-~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
.......+....+... .....+.....+++|+..... ..+...++ ..||+.+ +.+++.+|+.+|+.... ....
T Consensus 71 ~~~~~~~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~-~~~~~~~~~~~~v~~~~~~~e~l~~Rl~~R~~~~~-~~i~ 148 (205)
T 3tr0_A 71 AFLEHATIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGA-RQIRELFPPALSIFILPPSIEALRERLIKRRQDDT-AIIE 148 (205)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCHHHH-HHHHHHCTTCEEEEEECSCHHHHHHHHHTCTTSCS-STHH
T ss_pred cEEeeeeeecccccchHHHHHHHHHcCCeEEEEECHHHH-HHHHHhCCCcEEEEEECcCHHHHHHHHHHhCCCCH-HHHH
Confidence 1111111111111000 001112335567777532211 12223222 4677766 58999999998864322 2233
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
..+....... .+...+|++|.|+ +.++..+++.+.+.
T Consensus 149 ~rl~~~~~~~---------~~~~~~d~vi~n~-~~~~~~~~l~~~i~ 185 (205)
T 3tr0_A 149 QRLALAREEM---------AHYKEFDYLVVND-NFDQAVQNLIHIIS 185 (205)
T ss_dssp HHHHHHHHHH---------TTGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---------hcccCCCEEEECC-CHHHHHHHHHHHHH
Confidence 3333222211 1146789999887 66666666666554
No 84
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=99.02 E-value=2.5e-10 Score=105.98 Aligned_cols=38 Identities=18% Similarity=0.338 Sum_probs=33.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+++.|+|.|++||||||+|+.|++.++ +.++++|++++
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~ 41 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYG---LAHLSTGDMLR 41 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHC---CEEEEHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhC---ceEEehhHHHH
Confidence 346799999999999999999999997 89999988764
No 85
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=99.01 E-value=1.5e-09 Score=99.73 Aligned_cols=75 Identities=12% Similarity=0.200 Sum_probs=45.2
Q ss_pred cCeEEEEecChhHHHHHhh-hcccccc---C------CC-hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhh
Q 035513 152 MSMKIFVDTDSDVRLSRRI-QRDTVER---G------RD-IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVA 220 (473)
Q Consensus 152 ~Dl~I~L~~~~e~~~~R~~-~R~~~~~---~------~~-~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~ 220 (473)
.|++|||++|++++.+|+. +|+...+ + .+ .+.. ..+.++....|..+... ..+++|+++.+.++.
T Consensus 122 ~~~vi~l~~~~e~~~~Rl~~~R~~~~~~~~g~~~~~~~d~~e~~-~~~~~r~~~~~~~~~~~---~~~~~Id~~~~~e~v 197 (213)
T 2plr_A 122 PDITFYIRVSPDIALERIKKSKRKIKPQEAGADIFPGLSPEEGF-LKYQGLITEVYDKLVKD---ENFIVIDGTKTPKEI 197 (213)
T ss_dssp CSEEEEEECCHHHHHHHHHHTTCCCCTTTTTTTTCTTSCHHHHH-HHHHHHHHHHHHHHTTT---TTCEEEETTSCHHHH
T ss_pred CCEEEEEeCCHHHHHHHHhcccccccccccccccccccchhhhH-HHHHHHHHHHHHHHHhh---CCEEEEECCCCHHHH
Confidence 6889999999999999998 7752111 0 00 1221 34555545555555332 267888877555555
Q ss_pred hhhhhheeee
Q 035513 221 IDLIVQHILT 230 (473)
Q Consensus 221 i~~i~~~I~~ 230 (473)
.+.+.+.+..
T Consensus 198 ~~~I~~~l~~ 207 (213)
T 2plr_A 198 QIQIRKFVGE 207 (213)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5666555543
No 86
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=99.01 E-value=1.5e-10 Score=106.81 Aligned_cols=35 Identities=20% Similarity=0.275 Sum_probs=27.7
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRV 61 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~ 61 (473)
|+++++.+|+|+|++||||||+++.|++.++..++
T Consensus 4 m~~~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 4 MAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp ---CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred ccccCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 44567789999999999999999999998763333
No 87
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=99.00 E-value=2e-10 Score=107.02 Aligned_cols=39 Identities=15% Similarity=0.250 Sum_probs=32.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
+..+..+|+|+|++||||||+++.|+++++ +.+++.|.+
T Consensus 10 m~~~~~iI~i~g~~gsGk~~i~~~la~~lg---~~~~d~~~~ 48 (223)
T 3hdt_A 10 MGNKNLIITIEREYGSGGRIVGKKLAEELG---IHFYDDDIL 48 (223)
T ss_dssp --CCCEEEEEEECTTSCHHHHHHHHHHHHT---CEEECHHHH
T ss_pred cCCCCeEEEEeCCCCCCHHHHHHHHHHHcC---CcEEcHHHH
Confidence 444568999999999999999999999998 899986543
No 88
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=99.00 E-value=2.7e-10 Score=104.89 Aligned_cols=116 Identities=12% Similarity=0.114 Sum_probs=67.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCCceec
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSI 112 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~i~~ 112 (473)
++|.|.|||||||||+|+.|+++++ +.+||++++++...... + +.-.+.-..+..|+-+.-
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g---~~~istGdllR~~i~~~-------------t---~lg~~~~~~~~~G~lvpd 61 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKG---FVHISTGDILREAVQKG-------------T---PLGKKAKEYMERGELVPD 61 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHC---CEEEEHHHHHHHHHHHT-------------C---HHHHHHHHHHHHTCCCCH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHC---CeEEcHHHHHHHHHHhc-------------C---hhhhhHHHHHhcCCcCCH
Confidence 3688999999999999999999998 99999988874311100 0 000111111222222210
Q ss_pred cccccccccccccccccCCCcEEEEecccccCCh-h-h-------hhccCeEEEEecChhHHHHHhhhcc
Q 035513 113 PDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-V-------RDLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 113 p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~-------~~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
.....-...+ +...+-+|+||..--..+ . + ....|.+|++++|.++..+|+..|.
T Consensus 62 ~iv~~lv~~~------l~~~~~~ilDGfPRt~~Qa~~l~~~l~~~~~~~~~vi~l~v~~e~l~~Rl~~R~ 125 (206)
T 3sr0_A 62 DLIIALIEEV------FPKHGNVIFDGFPRTVKQAEALDEMLEKKGLKVDHVLLFEVPDEVVIERLSGRR 125 (206)
T ss_dssp HHHHHHHHHH------CCSSSCEEEESCCCSHHHHHHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEE
T ss_pred HHHHHHHHHh------hccCCceEecCCchhHHHHHHHHhhHHHhccccceeeecCCCHHHHHHHHhCCc
Confidence 0000000001 122334899996533222 1 1 1236789999999999999999884
No 89
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.98 E-value=2.5e-10 Score=107.20 Aligned_cols=41 Identities=12% Similarity=0.144 Sum_probs=34.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
...+++.|+|.|++||||||+|+.|++.++ +.++++|++++
T Consensus 12 ~~~~~~~I~l~G~~GsGKsT~a~~La~~l~---~~~i~~d~li~ 52 (233)
T 1ak2_A 12 ESPKGVRAVLLGPPGAGKGTQAPKLAKNFC---VCHLATGDMLR 52 (233)
T ss_dssp --CCCCEEEEECCTTSSHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC---CceecHHHHHH
Confidence 344567899999999999999999999997 89999988764
No 90
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=98.97 E-value=1.9e-11 Score=114.78 Aligned_cols=75 Identities=12% Similarity=0.099 Sum_probs=37.4
Q ss_pred hccCeEEEEecChhHHHHHhhhcccc-ccCCChHHHHHHHHhhcccchhhhcCCc--cccc-cEecccCCCchhhhhhhh
Q 035513 150 DLMSMKIFVDTDSDVRLSRRIQRDTV-ERGRDIEDVLDQYARFVKPSFEEFILPS--KKYA-DIIIPRGGDNDVAIDLIV 225 (473)
Q Consensus 150 ~~~Dl~I~L~~~~e~~~~R~~~R~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~--~~~a-d~vI~~~~~~~~~i~~i~ 225 (473)
..+|++|||++|++++++|+.+|+.. ++... ..|.++.+..|..+...+ ...+ .++|+++.+.++..+++.
T Consensus 145 ~~pD~vi~Ld~~~e~~~~Ri~~R~r~~e~~~~-----~~~~~rv~~~~~~~~~~~~~~~~~~~~vId~~~~~eev~~~I~ 219 (230)
T 2vp4_A 145 VQADLIIYLRTSPEVAYERIRQRARSEESCVP-----LKYLQELHELHEDWLIHQRRPQSCKVLVLDADLNLENIGTEYQ 219 (230)
T ss_dssp CCCSEEEEEECCHHHHHHHHHHHCCGGGTTCC-----HHHHHHHHHHHHHHHTSCCSSCCCEEEEEECCC----------
T ss_pred CCCCEEEEEeCCHHHHHHHHHHcCCcccccCc-----HHHHHHHHHHHHHHHHHhcccCCCCEEEEECCCCHHHHHHHHH
Confidence 45799999999999999999888432 11111 124444445555554322 2334 478877655555555555
Q ss_pred heee
Q 035513 226 QHIL 229 (473)
Q Consensus 226 ~~I~ 229 (473)
+.+.
T Consensus 220 ~~l~ 223 (230)
T 2vp4_A 220 RSES 223 (230)
T ss_dssp ----
T ss_pred HHHH
Confidence 5444
No 91
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.96 E-value=6.6e-10 Score=103.66 Aligned_cols=35 Identities=20% Similarity=0.345 Sum_probs=31.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+|+|.|++||||||+++.|++.++ +.++++|++++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg---~~~i~~dd~~r 36 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS---LAHIESGGIFR 36 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT---CEEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEchHHHHH
Confidence 689999999999999999999997 89999988764
No 92
>1z7g_A HGPRT, HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; flexibility, trans CIS peptide bond isomerization, nucleotide binding; 1.90A {Homo sapiens} SCOP: c.61.1.1 PDB: 1hmp_A* 1bzy_A 3gep_A* 3ggc_A* 3ggj_A* 1d6n_A* 2vfa_A*
Probab=98.95 E-value=1.2e-09 Score=101.32 Aligned_cols=128 Identities=13% Similarity=0.172 Sum_probs=88.0
Q ss_pred CCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC----------
Q 035513 265 TTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK---------- 334 (473)
Q Consensus 265 t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p---------- 334 (473)
.+..+|+...++|+..|..+. . .+..++|+|+|+|.++...+.+.+.
T Consensus 36 ~~~~~~~~~~~~La~~i~~~~-------------------~----~~~~vVvgi~~GG~~~a~~la~~L~~~~~i~~g~~ 92 (217)
T 1z7g_A 36 IPHGLIMDRTERLARDVMKEM-------------------G----GHHIVALCVLKGGYKFFADLLDYIKALNRNSDRSI 92 (217)
T ss_dssp ECHHHHHHHHHHHHHHHHHHH-------------------T----TSCEEEEEECSSCCHHHHHHHHHHHHHHTTCSSCC
T ss_pred ECHHHHHHHHHHHHHHHHHHc-------------------C----CCCCEEEEECCCCHHHHHHHHHHhCCccccCCCce
Confidence 456789999998888876431 0 1346799999999999988887765
Q ss_pred CceeeEEEE--EEcCCCCceEEee--cCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHH
Q 035513 335 GIKIGKILI--HREGNSGRQLIYQ--KLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIH 410 (473)
Q Consensus 335 ~a~~g~i~~--~r~~~~~~~~~~~--~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~ 410 (473)
....+++.+ ++++.+.....+. ..+.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.++++++.+++
T Consensus 93 ~~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~~gk~VliVDDii~TG~Tl~~~~~~L~~~g~--~~v~~~~l~~k~~~-- 168 (217)
T 1z7g_A 93 PMTVDFIRLKSYCNDQSTGDIKVIGGDDLSTLTGKNVLIVEDIIDTGKTMQTLLSLVRQYNP--KMVKVASLLVKRTP-- 168 (217)
T ss_dssp CEEEEEECBC----------CCBCCSSCGGGGTTSEEEEEEEECCCHHHHHHHHHHHHTTCC--SEEEEEEEEEECC---
T ss_pred EeeeeeEEEEEecccccccceEEecCCCccccCCCEEEEEeceeCcHHHHHHHHHHHHhcCC--CEEEEEEEEECccc--
Confidence 334566553 2332211122222 234578999999999999999999999999999998 78999999998886
Q ss_pred HHHHhCCCc
Q 035513 411 AICKRFPKI 419 (473)
Q Consensus 411 ~~~~~~p~v 419 (473)
+.....|+.
T Consensus 169 ~~~~~~~dy 177 (217)
T 1z7g_A 169 RSVGYKPDF 177 (217)
T ss_dssp ----CCCSE
T ss_pred ccCCCCCcE
Confidence 444545653
No 93
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.93 E-value=3.8e-10 Score=104.47 Aligned_cols=35 Identities=17% Similarity=0.324 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|+|+|++||||||+++.|++.++ +.++++|++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g---~~~i~~d~~~r 36 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYG---IPQISTGDMLR 36 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC---CCEEEHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC---CeEEeHHHHHH
Confidence 589999999999999999999987 88999988764
No 94
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=98.92 E-value=5.5e-10 Score=102.34 Aligned_cols=179 Identities=16% Similarity=0.137 Sum_probs=72.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhcC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHG 107 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g 107 (473)
...++.+|+|+|++||||||+++.|+..+.. ... +......+.... .......+.|.++. .+.+. ...+
T Consensus 2 ~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~-~~~-~~i~~~~~~~~~-~~~~~~~~~~~~~~-----~~~~~---~~~~ 70 (207)
T 2j41_A 2 DNEKGLLIVLSGPSGVGKGTVRKRIFEDPST-SYK-YSISMTTRQMRE-GEVDGVDYFFKTRD-----AFEAL---IKDD 70 (207)
T ss_dssp --CCCCEEEEECSTTSCHHHHHHHHHHCTTC-CEE-CCCCEECSCCCT-TCCBTTTBEECCHH-----HHHHH---HHTT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHhhCC-CeE-EecccccCCCCC-CccCCCceEEcCHH-----HHHHH---HHcC
Confidence 3456779999999999999999999988731 122 111111111100 00001123333221 12221 2334
Q ss_pred Cceeccccccccccccc-c-ccccCCCcEEEEecccccCChhhhhcc-C-eEEEEe-cChhHHHHHhhhccccccCCChH
Q 035513 108 QAVSIPDYDFKSHKRKQ-Q-SRLINPSDVFILEGILVLHDPRVRDLM-S-MKIFVD-TDSDVRLSRRIQRDTVERGRDIE 182 (473)
Q Consensus 108 ~~i~~p~~~~~~~~~~~-~-~~~~~~~~viIlEG~~~l~~~~~~~~~-D-l~I~L~-~~~e~~~~R~~~R~~~~~~~~~~ 182 (473)
..+..+.+....+.... . ...+.....+++|+.+... ..+...+ | ..+|+. ++.+++.+|+..|+.. +.+
T Consensus 71 ~~~~~~~~~~~~~g~~~~~i~~~l~~g~~vv~d~~~~~~-~~~~~~~~~~~~i~~~~~~~~~~~~Rl~~R~~~----~~~ 145 (207)
T 2j41_A 71 QFIEYAEYVGNYYGTPVQYVKDTMDEGHDVFLEIEVEGA-KQVRKKFPDALFIFLAPPSLEHLRERLVGRGTE----SDE 145 (207)
T ss_dssp CEEEEEEETTEEEEEEHHHHHHHHHTTCEEEEECCGGGH-HHHHHHCTTSEEEEEECCC---------------------
T ss_pred CeEEEEeECCeecCCCHHHHHHHHHcCCeEEEEECHHHH-HHHHHhcCCeEEEEEECCCHHHHHHHHHhcCCC----CHH
Confidence 44444444322111110 0 1112335788899865432 3444444 6 445554 4577999998888531 122
Q ss_pred HHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 183 ~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
.+...+... .+... +...+|++|+|+ +.++..+++.+.+.
T Consensus 146 ~~~~rl~~~-~~~~~-----~~~~~d~vI~n~-~~e~~~~~i~~~l~ 185 (207)
T 2j41_A 146 KIQSRINEA-RKEVE-----MMNLYDYVVVND-EVELAKNRIQCIVE 185 (207)
T ss_dssp -----------CGGG-----GGGGCSEEEECS-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-HHHHh-----ccccCCEEEECC-CHHHHHHHHHHHHH
Confidence 222222111 11111 235689998876 55555555555443
No 95
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.91 E-value=5.8e-10 Score=103.82 Aligned_cols=117 Identities=13% Similarity=0.237 Sum_probs=67.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HH-hhccCccCCCCccccHHHHHHHHHHhhcCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KL-QNLHDYNFDHPDAFDTELLLSDMEKLKHGQ 108 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~-~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~ 108 (473)
.+.+||.|++||||||+|+.|++.++ +.+++++++++..... .. .....+ +..-.....+.+.+.+..
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g---~~~is~gdllR~~~~~~t~lG~~i~~~-~~~G~lvpdei~~~ll~~----- 78 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFG---IPQISTGDMLRAAVKAGTPLGVEAKTY-MDEGKLVPDSLIIGLVKE----- 78 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHT---CCEECHHHHHHHHHHTTCHHHHHHHHH-HTTTCCCCHHHHHHHHHH-----
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhC---CCeeechHHHHHhccCCChHHHHHHHH-HhhccccccHHHHHHHHH-----
Confidence 35799999999999999999999997 9999998877431100 00 000000 010001111111111111
Q ss_pred ceeccccccccccccccccccCCCcEEEEecccccCCh-h-hh---hccCeEEEEecChhHHHHHhhhcc
Q 035513 109 AVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-R-VR---DLMSMKIFVDTDSDVRLSRRIQRD 173 (473)
Q Consensus 109 ~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~-~-~~---~~~Dl~I~L~~~~e~~~~R~~~R~ 173 (473)
++.. .....-+|+||..--..+ . +. ...|.+|||++|.+++++|+..|.
T Consensus 79 -------------~l~~---~~~~~g~ILDGfPRt~~Qa~~L~~~~~~~d~VI~Ldvp~e~l~~Rl~~R~ 132 (230)
T 3gmt_A 79 -------------RLKE---ADCANGYLFDGFPRTIAQADAMKEAGVAIDYVLEIDVPFSEIIERMSGRR 132 (230)
T ss_dssp -------------HHHS---GGGTTCEEEESCCCSHHHHHHHHHTTCCCSEEEEECCCHHHHHHHHHTEE
T ss_pred -------------HHhC---cccCCCeEecCCCCcHHHHHHHHHhCCCccEEEEEeCCHHHHHHHHHcCC
Confidence 1100 011234788986432211 1 22 246899999999999999999995
No 96
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase); transferase,phosphoribosyltransferase, purine salvage, nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A* 1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Probab=98.91 E-value=4.3e-09 Score=97.67 Aligned_cols=124 Identities=14% Similarity=0.189 Sum_probs=90.2
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecce-eeEEEeeccCchhHHHHHhhc---C-CceeeE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRR-LCGISIIRSGESMENALRACC---K-GIKIGK 340 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~-~~~v~ilraG~~~~~~~~~~~---p-~a~~g~ 340 (473)
+..++....++|+..+..+.-.. + + ...++ .++|+|+|+|..+...+.+.+ . ...++.
T Consensus 13 ~~~~i~~~~~~La~~I~~~~~~~-~--------~--------~~~~p~~vVv~v~~gG~~~a~~La~~L~~~~~p~~~~~ 75 (220)
T 1tc1_A 13 TEEEIRTRIKEVAKRIADDYKGK-G--------L--------RPYVNPLVLISVLKGSFMFTADLCRALCDFNVPVRMEF 75 (220)
T ss_dssp CHHHHHHHHHHHHHHHHHHHTTS-C--------C--------BTTTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHccCc-c--------c--------ccCCCCeEEEEeccCCHHHHHHHHHHHHhcCCCccccE
Confidence 44578888888887776532110 0 0 00134 689999999999999998888 4 234677
Q ss_pred EEEEEcC-C---CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 341 ILIHREG-N---SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 341 i~~~r~~-~---~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+.+.+.. . +........++.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++++..+++
T Consensus 76 l~~~~y~~~~~~~~~v~~~~~~~~~v~Gk~VLLVDDii~TG~Tl~~a~~~L~~~Ga--~~V~v~~l~~k~~~ 145 (220)
T 1tc1_A 76 ICVSSYGEGLTSSGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRRP--ASLKTVVLLDKREG 145 (220)
T ss_dssp EEEECC---------CEEEECCSSCCTTSEEEEEEEEESSCHHHHHHHHHHHTTCC--SEEEEEEEEECTTC
T ss_pred EEEeecCCCcccCCcEEEecCCCccCCCCEEEEEeCccCcHHHHHHHHHHHHhcCC--CEEEEEEEEECCcc
Confidence 7665431 1 22222235677789999999999999999999999999999998 78999999999887
No 97
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide complex; HET: IMP; 2.20A {Thermoanaerobacter tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Probab=98.91 E-value=4.8e-09 Score=96.49 Aligned_cols=96 Identities=18% Similarity=0.272 Sum_probs=77.2
Q ss_pred eeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEEEcCC----CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHH
Q 035513 312 RLCGISIIRSGESMENALRACCKG-IKIGKILIHREGN----SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISL 386 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~r~~~----~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~ 386 (473)
..++|+|.|+|.++...+.+.+.- ..++.+...+... +........++.+++|++|+|+||+++||+|+.+|++.
T Consensus 61 ~~viv~v~~gG~~~a~~la~~l~~p~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~gk~VllVDDvi~TG~Tl~~a~~~ 140 (205)
T 1yfz_A 61 DLVLIGVLKGAIMFMSGLSRAIDLPLSIDFLAVSSYGSSTKSSGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRET 140 (205)
T ss_dssp CEEEEEETTTHHHHHHHHHHTCCSCCEEEEEEEEECSHHHHHHCCEEEEECCCSCCTTSEEEEEEEEESSCHHHHHHHHH
T ss_pred CCEEEEECcCCHHHHHHHHHHhCCCceeEEEEEEeccCCccccceEEEeccCCCCCCcCEEEEECCccCcHHHHHHHHHH
Confidence 457899999999999999999863 3556666554221 22222345677789999999999999999999999999
Q ss_pred HHhcCCCCCcEEEEEEEeCHHHH
Q 035513 387 ILSKGVPESNIIFLNLIAAPQGI 409 (473)
Q Consensus 387 L~~~g~~~~~i~~~~~~~~~~g~ 409 (473)
|+++|+ ++|.+++++..++|.
T Consensus 141 L~~~Ga--~~V~~~~l~~~~~~~ 161 (205)
T 1yfz_A 141 LLGRKP--RSLKICTILDKPERR 161 (205)
T ss_dssp HHTTCC--SEEEEEEEEECGGGC
T ss_pred HHhcCC--CEEEEEEEEecCccc
Confidence 999998 789999999999884
No 98
>1hgx_A HGXPRTASE, hypoxanthine-guanine-xanthine phosphoribosyltransferase; glycosyltransferase, purine salvage, transferase (glycosyltransferase); HET: 5GP; 1.90A {Tritrichomonas foetus} SCOP: c.61.1.1
Probab=98.91 E-value=3.6e-09 Score=95.52 Aligned_cols=120 Identities=15% Similarity=0.161 Sum_probs=87.4
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC-ceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG-IKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~-a~~g~i~~~ 344 (473)
+..++.....+|+..+.... + .+..++|++.|+|.++...+.+.+.- ..++.+.++
T Consensus 16 ~~~~i~~~~~~la~~i~~~~----~-------------------~~~~vvv~i~~gg~~~a~~la~~l~~p~~~~~~~~~ 72 (183)
T 1hgx_A 16 NQDDIQKRIRELAAELTEFY----E-------------------DKNPVMICVLTGAVFFYTDLLKHLDFQLEPDYIICS 72 (183)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----T-------------------TTCCEEEEETTTTHHHHHHHHTTCCSCCEEEEEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHc----C-------------------CCCcEEEEeCcChHHHHHHHHHHcCCCcceeEEEEE
Confidence 45577777777776664321 0 03467899999999999999999863 455666553
Q ss_pred Ec--CC-CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHH
Q 035513 345 RE--GN-SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIH 410 (473)
Q Consensus 345 r~--~~-~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~ 410 (473)
+- +. +........++.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++++..++|.+
T Consensus 73 ~y~~~~~~~~~~~~~~~~~~~~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga--~~v~~~~l~~~~~g~~ 139 (183)
T 1hgx_A 73 SYSGTKSTGNLTISKDLKTNIEGRHVLVVEDIIDTGLTMYQLLNNLQMRKP--ASLKVCTLCDKDIGKK 139 (183)
T ss_dssp C---------CEEEECCSSCCTTSEEEEEEEEESSSHHHHHHHHHHHTTCC--SEEEEEEEEEECCSSC
T ss_pred ecCCcccccceEEeecCCCCCCCCEEEEECCccCCHHHHHHHHHHHHhcCC--CEEEEEEEEecCcccc
Confidence 21 11 12222334667789999999999999999999999999999998 7899999988887643
No 99
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.50A {Pyrococcus horikoshii} SCOP: c.61.1.1
Probab=98.90 E-value=6e-09 Score=91.19 Aligned_cols=93 Identities=18% Similarity=0.217 Sum_probs=73.5
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC--C-Cc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHh
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGN--S-GR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILS 389 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~--~-~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~ 389 (473)
++|+|.|+|.++..++.+.+....++.+...+... + .. ..+...++.+++|++|+|+|++++||+|+.++++.|++
T Consensus 29 ~iv~v~~gg~~~a~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VllVDDvitTG~Tl~~a~~~L~~ 108 (153)
T 1vdm_A 29 VIIGVARGGLIPAVRLSHILGDIPLKVIDVKFYKGIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKK 108 (153)
T ss_dssp EEEEETTTTHHHHHHHHHHTTSCCEEEEEEECCCC--CCCSSCEEEECCCSCCBTCEEEEEEEEESSCHHHHHHHHHHHT
T ss_pred EEEEECCcCHHHHHHHHHHhCCCceEEEEEEEecCCcccccceeEeccCCcCCCCCEEEEEecccCChHHHHHHHHHHHH
Confidence 67788999999999999998755555554433211 1 11 23445666788999999999999999999999999999
Q ss_pred cCCCCCcEEEEEEEeCHHH
Q 035513 390 KGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 390 ~g~~~~~i~~~~~~~~~~g 408 (473)
+|+ +.|.+++++..+++
T Consensus 109 ~ga--~~v~~~~l~~~~~~ 125 (153)
T 1vdm_A 109 LGA--KEIKIACLAMKPWT 125 (153)
T ss_dssp TTB--SEEEEEEEEECTTC
T ss_pred cCC--CEEEEEEEEeCCCC
Confidence 998 78999999998876
No 100
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Probab=98.89 E-value=8.2e-09 Score=95.16 Aligned_cols=110 Identities=19% Similarity=0.356 Sum_probs=82.3
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC-------------CCceEE-------------------------
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGN-------------SGRQLI------------------------- 354 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~-------------~~~~~~------------------------- 354 (473)
.++|++.|+|.++...+.+.+. ++...+.+.|... ++....
T Consensus 25 ~vVv~v~rGg~~~A~~la~~l~-~p~~~~~~rk~~~~~~~e~~~ga~s~~g~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 103 (208)
T 1wd5_A 25 PVVLGLPRGGVVVADEVARRLG-GELDVVLVRKVGAPGNPEFALGAVGEGGELVLMPYALRYADQSYLEREAARQRDVLR 103 (208)
T ss_dssp CEEEECTTHHHHHHHHHHHHHT-CEEEECCEEEEEETTEEEEEEEEEETTCCEEECTTHHHHSCHHHHHHHHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHhC-CCeEEEEEEEecCCCCchhhcceecCCCcEEechhhhcccCHHHHHHHHHHHHHHHH
Confidence 4688888999999999888763 4444333443211 111110
Q ss_pred -----e--ecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEEEeec
Q 035513 355 -----Y--QKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEID 427 (473)
Q Consensus 355 -----~--~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~~~id 427 (473)
| ...+.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++.+.++++.+++.... .+++..+-
T Consensus 104 ~r~~~~~~~~~~~~~~gk~VllVDDvi~TG~Tl~~a~~~L~~~ga--~~V~v~~~v~~~~~~~~l~~~~---~~v~~~~~ 178 (208)
T 1wd5_A 104 KRAERYRRVRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVPVASPEAVERLKARA---EVVALSVP 178 (208)
T ss_dssp HHHHHHHHHSCCCCCTTSEEEEECSCBSSCHHHHHHHHHHHTTCC--SEEEEEEEEBCHHHHHHHHTTS---EEEEEECC
T ss_pred HHHHHhhccCCCCCCCCCEEEEECCCccHHHHHHHHHHHHHHcCC--CEEEEEEEEcCHHHHHHhcccC---cEEEEecC
Confidence 1 2445678999999999999999999999999999998 7899999999999999887753 77776654
Q ss_pred C
Q 035513 428 S 428 (473)
Q Consensus 428 ~ 428 (473)
+
T Consensus 179 ~ 179 (208)
T 1wd5_A 179 Q 179 (208)
T ss_dssp T
T ss_pred c
Confidence 4
No 101
>2jbh_A Phosphoribosyltransferase domain-containing prote; glycosyltransferase, purine salvage; HET: 5GP; 1.7A {Homo sapiens}
Probab=98.88 E-value=2.3e-09 Score=100.03 Aligned_cols=118 Identities=15% Similarity=0.214 Sum_probs=84.7
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC----------C
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK----------G 335 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p----------~ 335 (473)
+..++.....+|+..+..+. + .++.++|+|+|+|.++...+.+.+. .
T Consensus 45 ~~~~i~~~~~~La~~i~~~~----~-------------------~~~~vvv~i~~gG~~~a~~la~~L~~~~~~~~~~~p 101 (225)
T 2jbh_A 45 PHGIIVDRIERLAKDIMKDI----G-------------------YSDIMVLCVLKGGYKFXADLVEHLKNISRNSDRFVS 101 (225)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----T-------------------TSCEEEEEEETTTHHHHHHHHHHHHHHHHHSSCCCC
T ss_pred CHHHHHHHHHHHHHHHHHHc----C-------------------CCCCEEEEEcCCCEehhHHHHHHhhhhccccccCCC
Confidence 44567777777777665431 0 1346789999999999998888765 3
Q ss_pred ceeeEEEEEE--cCC-CCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 336 IKIGKILIHR--EGN-SGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 336 a~~g~i~~~r--~~~-~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+.++++...+ ++. +.+ .......+.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++++..+++
T Consensus 102 ~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~v~Gk~VllVDDii~TG~Tl~~a~~~L~~~ga--~~V~va~l~~k~~~ 176 (225)
T 2jbh_A 102 MKVDFIRLKSYRNDQSMGEMQIIGGDDLSTLAGKNVLIVEDVVGTGRTMKALLSNIEKYKP--NMIKVASLLVKRTS 176 (225)
T ss_dssp EEEEEEEEC----------CCEESSSCGGGGTTSEEEEEEEEESSSHHHHHHHHHHHTTCC--SEEEEEEEEEECC-
T ss_pred ceEEEEEEEeccCccccccEEEecCCCccccCCCEEEEEccccCcHHHHHHHHHHHHhcCC--CEEEEEEEEECCcc
Confidence 5577777543 222 222 22212234578999999999999999999999999999998 78999999998876
No 102
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.88 E-value=5.7e-10 Score=100.23 Aligned_cols=31 Identities=26% Similarity=0.314 Sum_probs=22.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i 64 (473)
++++|+|+|++||||||+|+.|++.++ ..++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~---~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLP---GSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHST---TCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcC---CCEE
Confidence 467899999999999999999999987 4455
No 103
>1dku_A Protein (phosphoribosyl pyrophosphate synthetase); open alpha-beta structure, domain duplication, phosphoribosyltransferase type I fold; HET: AP2 ABM; 2.20A {Bacillus subtilis} SCOP: c.61.1.2 c.61.1.2 PDB: 1dkr_A* 1ibs_A*
Probab=98.87 E-value=1.5e-09 Score=106.22 Aligned_cols=133 Identities=17% Similarity=0.159 Sum_probs=92.0
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.+.++|++.++|..+...+.+.+. +++..+.-.|...+... ...++.+++|++|+|+|||++||+|+.+|++.|+++
T Consensus 167 ~~~vVv~pd~Gg~~~A~~la~~L~-~p~~~l~k~r~~~~~~~--~~~l~~~v~gk~VlLVDDiitTG~Tl~~aa~~Lk~~ 243 (317)
T 1dku_A 167 EDIVIVSPDHGGVTRARKLADRLK-APIAIIDKRRPRPNVAE--VMNIVGNIEGKTAILIDDIIDTAGTITLAANALVEN 243 (317)
T ss_dssp CSEEEEESSGGGHHHHHHHHHHTT-CCEEEEECC-----------CEEESCCTTCEEEEECSEESSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCcchHHHHHHHHHHhC-CCEEEEEEEecccccee--EEEecccCCCCEEEEEecccCCCHHHHHHHHHHHHc
Confidence 467899999999999999999885 55554332232222221 223456899999999999999999999999999999
Q ss_pred CCCCCcEEEEE---EEeCHHHHHHHHHhCCCcEEEEEeecCCC--CCCc----ceecCCCchhhhccC
Q 035513 391 GVPESNIIFLN---LIAAPQGIHAICKRFPKIKIVTSEIDSSI--DEHA----CVIPGMGEFGDRYFG 449 (473)
Q Consensus 391 g~~~~~i~~~~---~~~~~~g~~~~~~~~p~v~i~~~~id~~l--~~~~----~i~PGlGd~gdr~fg 449 (473)
|+ ++|.+++ +++. .+++++.+...+.-++|..+-..- .-++ -+-|=++++-.|.++
T Consensus 244 Ga--~~V~~~~tH~v~~~-~a~~~l~~~~i~~vv~t~tip~~~~~~~~k~~~~~va~~~a~ai~~~~~ 308 (317)
T 1dku_A 244 GA--KEVYACCTHPVLSG-PAVERINNSTIKELVVTNSIKLPEEKKIERFKQLSVGPLLAEAIIRVHE 308 (317)
T ss_dssp TC--SEEEEECSEECCCT-THHHHHHTSSEEEEEEETTSCC----CCSSEEEECCHHHHHHHHHHHHH
T ss_pred CC--cEEEEEEECcccCh-HHHHHHhhCCCCEEEEeCCcCcchhhcCCCeEEEEhHHHHHHHHHHHhc
Confidence 98 7888888 6655 599999877777777777663311 1111 133445566666654
No 104
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=98.87 E-value=4.1e-10 Score=103.93 Aligned_cols=181 Identities=18% Similarity=0.127 Sum_probs=80.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
.+++++.+|+|+||+||||||+++.|++.++.. +. ......-+..... ......|.| .+.+.+.+.+ ..
T Consensus 3 ~m~~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~-~~-~~~~~~tr~~~~~-e~~g~~y~~-----~~~~~f~~~~---~~ 71 (208)
T 3tau_A 3 AMTERGLLIVLSGPSGVGKGTVREAVFKDPETS-FD-YSISMTTRLPREG-EQDGVDYYF-----RSREVFEQAI---KD 71 (208)
T ss_dssp --CCCCCEEEEECCTTSCHHHHHHHHHHSTTCC-CE-ECCCEESSCCCTT-CCBTTTBEE-----CCHHHHHHHH---HT
T ss_pred cccCCCcEEEEECcCCCCHHHHHHHHHhhCCCc-EE-EEEecccccCcCc-ccCCceeEE-----ecHHHHHHHH---hc
Confidence 345677899999999999999999999987521 11 1111000000000 000011222 2223333322 23
Q ss_pred CCceecccccccccccccc--ccccCCCcEEEEecccccCChhhhh-ccC-eEEEEecC-hhHHHHHhhhccccccCCCh
Q 035513 107 GQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRD-LMS-MKIFVDTD-SDVRLSRRIQRDTVERGRDI 181 (473)
Q Consensus 107 g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~-~~D-l~I~L~~~-~e~~~~R~~~R~~~~~~~~~ 181 (473)
+..+.+..+....+..... ...+.....+++|+-.... ..+.. ..+ ..||+.++ .+++.+|+.+|+. .+.
T Consensus 72 ~~~le~~~~~~~~yg~~~~~i~~~l~~g~~vild~~~~g~-~~~~~~~~~~~~i~i~~ps~~~l~~Rl~~R~~----~~~ 146 (208)
T 3tau_A 72 GKMLEYAEYVGNYYGTPLEYVEEKLAAGVDIFLEIEVQGA-MQVRKAMPEGIFIFLTPPDLSELKNRIIGRGT----ESM 146 (208)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHHTTCCEEEECCHHHH-HHHHHHCTTSEEEEEECTTTTTSSCC-----------CC
T ss_pred CcEEEEEEEccccCCCcHHHHHHHHHcCCeEEEEeeHHHH-HHHHHhCCCeEEEEEeCCCHHHHHHHHHhcCC----CCH
Confidence 3333322222111111100 1112334556666422211 12222 223 57788765 8888888888753 223
Q ss_pred HHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 182 EDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
+.+...+..... .. .....+|++|.|+ +.+++++++.+.|..
T Consensus 147 e~i~~Rl~~~~~-e~-----~~~~~~d~vivN~-~~~~~~~~l~~~i~~ 188 (208)
T 3tau_A 147 EVVEERMETAKK-EI-----EMMASYDYAVVND-VVANAVQKIKGIVET 188 (208)
T ss_dssp HHHHHHHHHHHH-HH-----HHGGGSSEEEECS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HH-----HhhccCCEEEECc-CHHHHHHHHHHHHHH
Confidence 333333222211 00 1145689999877 566666666666643
No 105
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=98.84 E-value=7.3e-09 Score=93.45 Aligned_cols=40 Identities=25% Similarity=0.348 Sum_probs=32.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSF 69 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~ 69 (473)
.++.+|+|+|++||||||+++.|++.++..+ +.+++.|.+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4578999999999999999999999886322 566776654
No 106
>1fsg_A HGPRTASE, hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: PRP 9DG; 1.05A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1qk3_A* 1qk4_A* 1qk5_A* 1dbr_A
Probab=98.83 E-value=5.2e-09 Score=98.10 Aligned_cols=118 Identities=14% Similarity=0.099 Sum_probs=88.1
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcCC----------
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKG---------- 335 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p~---------- 335 (473)
+..++....++|+..+.... + .+..++|+++|+|.++...+.+.+..
T Consensus 51 ~~~~i~~~~~~La~~i~~~~----~-------------------~~~~vVvgi~~gG~~~a~~la~~L~~~~~~~~~k~~ 107 (233)
T 1fsg_A 51 PGGLVKDRVEKLAYDIHRTY----F-------------------GEELHIICILKGSRGFFNLLIDYLATIQKYSGRESS 107 (233)
T ss_dssp CHHHHHHHHHHHHHHHHHHH----T-------------------TSCEEEEEEETTTHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred CHHHHHHHHHHHHHHHHHHc----C-------------------CCCCEEEEEccCCHHHHHHHHHHhCCcccccccccC
Confidence 45578888888887776541 0 13467899999999998888876642
Q ss_pred ---ceeeEEEEEE--cCCC-CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 336 ---IKIGKILIHR--EGNS-GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 336 ---a~~g~i~~~r--~~~~-~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
..++++..++ ++.+ .+..+....+.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++++..+++
T Consensus 108 ~~P~~~~~i~~~~y~~~~~~~~~~~~~~~~~~~~Gk~VLIVDDii~TG~Tl~~a~~~L~~~ga--~~V~vavl~~k~~~ 184 (233)
T 1fsg_A 108 VPPFFEHYVRLKSYQNDNSTGQLTVLSDDLSIFRDKHVLIVEDIVDTGFTLTEFGERLKAVGP--KSMRIATLVEKRTD 184 (233)
T ss_dssp SCSCEEEEEEEEEEETTEEEEEEEEECSCGGGGTTCEEEEEEEEESSSHHHHHHHHHHHTTCC--SEEEEEEEEEECCT
T ss_pred CCCcEEEEEEEEeccCccccccEEEecCCccccCCCEEEEEccccCcHHHHHHHHHHHHhcCC--CEEEEEEEEECCcc
Confidence 4477777654 2211 2222223345678999999999999999999999999999998 78999999988876
No 107
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.83 E-value=6e-09 Score=93.05 Aligned_cols=36 Identities=25% Similarity=0.292 Sum_probs=31.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH-HhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS-RLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~-~l~~~~~~~is~D~~~ 70 (473)
+.+|+|+|++||||||+|+.|++ .++ +.+++.|.+.
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~---~~~i~~d~~r 38 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPG---FYNINRDDYR 38 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTT---EEEECHHHHH
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCC---cEEecHHHHH
Confidence 47899999999999999999998 454 8999987653
No 108
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP; 2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Probab=98.83 E-value=6.3e-09 Score=96.06 Aligned_cols=125 Identities=15% Similarity=0.206 Sum_probs=89.5
Q ss_pred CCchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhc---C-CceeeE
Q 035513 265 TTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACC---K-GIKIGK 340 (473)
Q Consensus 265 t~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~---p-~a~~g~ 340 (473)
.+..++.....+|+..+....-... +. ..+..++|++.|+|..+...+.+.+ . ....+.
T Consensus 28 ~~~~~i~~~~~~La~~i~~~~~~~~---------~~--------~~~~~vvvgi~~gG~~~a~~la~~L~~~~~p~~~~~ 90 (211)
T 1pzm_A 28 VTQEQVWAATAKCAKKIAADYKDFH---------LT--------ADNPLYLLCVLKGSFIFTADLARFLADEGVPVKVEF 90 (211)
T ss_dssp ECHHHHHHHHHHHHHHHHHHHGGGT---------CB--------TTBCEEEEEETTTTHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eCHHHHHHHHHHHHHHHHHhccccc---------cc--------CCCCCEEEEEccchHHHHHHHHHHHhhcCCCceeee
Confidence 3556788888888887765432111 00 0135689999999999999998888 5 344666
Q ss_pred EEEE--EcC--CCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 341 ILIH--REG--NSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 341 i~~~--r~~--~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+... ++. .+........++.+++|++|+|+|++++||+|+.++++.|+++|+ ++|.+++++..+++
T Consensus 91 i~~~~y~~~~~~~~~~~~~~~~~~~v~gk~VllVDDvi~TG~Tl~aa~~~L~~~Ga--~~V~v~~l~~k~~~ 160 (211)
T 1pzm_A 91 ICASSYGSGVETSGQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKKP--ASLKTVVLLDKPSG 160 (211)
T ss_dssp EBCC-------------CCBCCSSCCTTCEEEEEEEEESSCHHHHHHHHHHHTTCC--SEEEEEEEEECGGG
T ss_pred EEeeeccCccccCCceEEeccCCCCCCCCEEEEECCccccHHHHHHHHHHHHhcCC--CEEEEEEEEecCcc
Confidence 6543 221 122211234567789999999999999999999999999999998 78999999999987
No 109
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=98.79 E-value=6.3e-09 Score=95.13 Aligned_cols=46 Identities=24% Similarity=0.336 Sum_probs=36.3
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE--EEecCCCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV--LVNQDSFYH 71 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~--~is~D~~~~ 71 (473)
.++..++.+|+|+|+|||||||+++.|+..++..|.. +++.|++.+
T Consensus 19 ~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~ 66 (200)
T 3uie_A 19 RLLDQKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRH 66 (200)
T ss_dssp HHHTSCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred HhcCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhh
Confidence 4455678999999999999999999999988532343 788777654
No 110
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=98.77 E-value=8e-09 Score=95.54 Aligned_cols=188 Identities=12% Similarity=0.069 Sum_probs=88.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HHhh-ccCccCC--CCcc------cc-HHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KLQN-LHDYNFD--HPDA------FD-TELLL 98 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~~~-~~~~~f~--~~~~------~d-~~~l~ 98 (473)
++.+|+|.|++||||||+++.|++.+...++.++.+..-- -+.. .... +...... .+.+ .+ ++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~--~~~~g~~i~~~l~~~~~~~~~~~~~~llf~a~R~~~~~ 82 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPG--GTPLAERIRELLLAPSDEPMAADTELLLMFAARAQHLA 82 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSC--SSHHHHHHHHHHHSCCSSCCCHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCC--CCHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 4689999999999999999999999976665555432111 1111 0111 1100000 0100 00 01111
Q ss_pred HHH-HHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhh---hhccCeEEEEecChhHHHHHhhhccc
Q 035513 99 SDM-EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV---RDLMSMKIFVDTDSDVRLSRRIQRDT 174 (473)
Q Consensus 99 ~~l-~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~---~~~~Dl~I~L~~~~e~~~~R~~~R~~ 174 (473)
+.+ ..+..|..|....|-.+...-. ....+-+ .+ ++.-. ..+ ....|++|||++|+++.++|+.+|..
T Consensus 83 ~~i~p~l~~g~~Vi~DRy~~S~~ayq---~~~~g~~---~~-~~~~l-~~~~~~~~~PDlvi~Ld~~~e~~~~Ri~~R~~ 154 (213)
T 4edh_A 83 GVIRPALARGAVVLCDRFTDATYAYQ---GGGRGLP---EA-RIAAL-ESFVQGDLRPDLTLVFDLPVEIGLARAAARGR 154 (213)
T ss_dssp HTHHHHHHTTCEEEEESCHHHHHHHT---TTTTCCC---HH-HHHHH-HHHHHTTCCCSEEEEEECCHHHHHHHHCCCSS
T ss_pred HHHHHHHHCCCEEEECccHhHHHHHh---hhccCCC---HH-HHHHH-HHHHhcCCCCCEEEEEeCCHHHHHHHHHhcCC
Confidence 212 2334455455444422211000 0000000 00 00000 001 13468999999999999999988853
Q ss_pred cccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeecc
Q 035513 175 VERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232 (473)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~l 232 (473)
..+.+.. ...|.++.+..|..+...+ +...++|+.+.+.++..+.+.+.|...+
T Consensus 155 ~dr~E~~---~~~~~~rv~~~y~~l~~~~-~~~~~vIDa~~s~eeV~~~I~~~l~~~l 208 (213)
T 4edh_A 155 LDRFEQE---DRRFFEAVRQTYLQRAAQA-PERYQVLDAGLPLAEVQAGLDRLLPNLL 208 (213)
T ss_dssp CCTTTTS---CHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHHHHH
T ss_pred cCccccc---HHHHHHHHHHHHHHHHHHC-CCcEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 2222111 1123333333343332211 2246788877666666666666665544
No 111
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=98.75 E-value=6.8e-09 Score=95.99 Aligned_cols=78 Identities=13% Similarity=0.151 Sum_probs=48.0
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
..|++|||++|+++.++|+.+|....+.+. ....|.++.+..|..+... ...-++|+.+.+.++..+++.+.+..
T Consensus 132 ~PDl~i~Ldv~~e~~~~Ri~~R~~~dr~E~---~~~~f~~rv~~~y~~la~~--~~~~~vIDa~~s~eeV~~~I~~~l~~ 206 (213)
T 4tmk_A 132 RPDLTLYLDVTPEVGLKRARARGELDRIEQ---ESFDFFNRTRARYLELAAQ--DKSIHTIDATQPLEAVMDAIRTTVTH 206 (213)
T ss_dssp CCSEEEEEECCHHHHHHHHHHHSSCCTTTT---SCHHHHHHHHHHHHHHHHT--CTTEEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCccchhh---hHHHHHHHHHHHHHHHHHH--CCcEEEECCCCCHHHHHHHHHHHHHH
Confidence 468999999999999999999853222211 1122344444445444321 12356777776666666777777765
Q ss_pred ccc
Q 035513 231 KLG 233 (473)
Q Consensus 231 ~l~ 233 (473)
.+.
T Consensus 207 ~l~ 209 (213)
T 4tmk_A 207 WVK 209 (213)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
No 112
>2aee_A OPRT, oprtase, orotate phosphoribosyltransferase; structural genomics, PSI, structure initiative; 1.95A {Streptococcus pyogenes} SCOP: c.61.1.1
Probab=98.75 E-value=4.5e-09 Score=97.13 Aligned_cols=117 Identities=9% Similarity=0.149 Sum_probs=85.1
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++...|.++...+.+.+. .+ .+.+ |.+.. +...... ...++|++|+|+|++++||+|+.++++.|+++|
T Consensus 71 ~vv~v~~~g~~~a~~la~~l~-~p--~~~~-rk~~~~~g~~~~i~--g~~~~gk~VliVDDvitTG~Tl~~a~~~L~~~G 144 (211)
T 2aee_A 71 VIAGTATAGIPHGAIIADKMT-LP--FAYI-RSKPKDHGAGNQIE--GRVLKGQKMVIIEDLISTGGSVLDAAAAASREG 144 (211)
T ss_dssp EEEEETTTTHHHHHHHHHHHT-CC--EEEE-CSSCC----CCSEE--SCCCTTCEEEEEEEEESSCHHHHHHHHHHHHTT
T ss_pred EEEEeccCcHHHHHHHHHHhC-CC--EEEE-EeecCCcCCcceec--CCCCCcCEEEEEeecccchHHHHHHHHHHHHCC
Confidence 566777788888877777653 23 2223 32221 1111111 135789999999999999999999999999999
Q ss_pred CCCCcEEEEEEEe--CHHHHHHHHHh-CCCcEEEEE-eecCCCCCCcceec
Q 035513 392 VPESNIIFLNLIA--APQGIHAICKR-FPKIKIVTS-EIDSSIDEHACVIP 438 (473)
Q Consensus 392 ~~~~~i~~~~~~~--~~~g~~~~~~~-~p~v~i~~~-~id~~l~~~~~i~P 438 (473)
+ +.|.+++++. +++|.+++.+. +|.+.+++. .+++.+++++||.+
T Consensus 145 a--~~v~v~~l~~~~~~~~~~~l~~~~~~~~~l~~~~~i~~~l~~~~~i~~ 193 (211)
T 2aee_A 145 A--DVLGVVAIFTYELPKASQNFKEAGIKLITLSNYTELIAVAKLQGYITN 193 (211)
T ss_dssp C--EEEEEEEEEECCCHHHHHHHHHHTCCEEESCCHHHHHHHHHHHTSSCH
T ss_pred C--cEEEEEEEEecccccHHHHHHhCCCCEEEEeeHHHHHHHHHHcCCCCH
Confidence 8 6777888777 68999999765 787777777 68888888888753
No 113
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=98.75 E-value=2.6e-08 Score=90.84 Aligned_cols=35 Identities=26% Similarity=0.292 Sum_probs=28.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D 67 (473)
++++|+|+|++||||||+++.|++.++ ++.+++.+
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~--g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIP--ANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSC--GGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHC--CCceEEEe
Confidence 567899999999999999999999883 24455544
No 114
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=98.74 E-value=6.7e-09 Score=97.48 Aligned_cols=79 Identities=14% Similarity=0.177 Sum_probs=43.7
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
..|++|||++|+++.++|+.+|+...+.+.. ...|.++....|..+...+ .. .++|+++.+.++..+++.+.+..
T Consensus 154 ~PDlvi~Ldv~~e~~~~Ri~~R~~~dr~E~~---~~~~~~rv~~~y~~la~~~-~~-~~vIDa~~sieeV~~~I~~~l~~ 228 (236)
T 3lv8_A 154 KPDLTLYLDIDPKLGLERARGRGELDRIEKM---DISFFERARERYLELANSD-DS-VVMIDAAQSIEQVTADIRRALQD 228 (236)
T ss_dssp CCSEEEEEECCHHHHHHC-----CCCTTTTS---CHHHHHHHHHHHHHHHHHC-TT-EEEEETTSCHHHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhcCCcchhhhh---HHHHHHHHHHHHHHHHHHC-CC-EEEEeCCCCHHHHHHHHHHHHHH
Confidence 4699999999999999999888532222111 1123333333444332211 12 67888776666777777777766
Q ss_pred cccc
Q 035513 231 KLGQ 234 (473)
Q Consensus 231 ~l~~ 234 (473)
.+.+
T Consensus 229 ~l~~ 232 (236)
T 3lv8_A 229 WLSQ 232 (236)
T ss_dssp HHTT
T ss_pred HHHh
Confidence 5543
No 115
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=98.72 E-value=5e-09 Score=94.73 Aligned_cols=25 Identities=20% Similarity=0.352 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+++|+||+||||||+++.|+..++
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4789999999999999999998875
No 116
>1u9y_A RPPK;, ribose-phosphate pyrophosphokinase; PRPP synthase, transferase; 2.65A {Methanocaldococcus jannaschii} SCOP: c.61.1.2 c.61.1.2 PDB: 1u9z_A*
Probab=98.72 E-value=2.7e-08 Score=95.94 Aligned_cols=99 Identities=13% Similarity=0.170 Sum_probs=74.0
Q ss_pred eeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCC-CCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 312 RLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPA-DISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~-~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
+.++|++.++|..+...+.+.+ +++...+.-+|...+ .....++. +++|++|+|+|||++||+|+.+|++.|+++
T Consensus 156 ~~vVv~pd~Gg~~~a~~la~~l-~~p~~~i~k~r~~~~---~~~~~l~g~~v~Gk~VlIVDDii~TG~Tl~~aa~~Lk~~ 231 (284)
T 1u9y_A 156 DPIVLAPDKGALEFAKTASKIL-NAEYDYLEKTRLSPT---EIQIAPKTLDAKDRDVFIVDDIISTGGTMATAVKLLKEQ 231 (284)
T ss_dssp SCEEEESSGGGHHHHHHHHHHH-TCCEEEBC-------------CCBSSCCCTTCCEEEEEEECSSSHHHHHHHHHHHHT
T ss_pred CcEEEEEcCChHHHHHHHHHHh-CCCEEEEEEEEcCCC---eEEEEecCccCCCCEEEEEecccCchHHHHHHHHHHHHC
Confidence 4678889999999999888776 344444333333222 22344564 799999999999999999999999999999
Q ss_pred CCCCCcEEEEEE--EeCHHHHHHHHHhC
Q 035513 391 GVPESNIIFLNL--IAAPQGIHAICKRF 416 (473)
Q Consensus 391 g~~~~~i~~~~~--~~~~~g~~~~~~~~ 416 (473)
|+ ++|.++++ +.+..|.+++.+..
T Consensus 232 Ga--~~V~~~~~h~v~s~~a~~~l~~~~ 257 (284)
T 1u9y_A 232 GA--KKIIAACVHPVLIGDALNKLYSAG 257 (284)
T ss_dssp TC--CSEEEEEEECCCCTTHHHHHHHHT
T ss_pred CC--cEEEEEEEeEecCcHHHHHHHhCC
Confidence 98 68888886 67889999998873
No 117
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=98.72 E-value=3e-09 Score=99.24 Aligned_cols=74 Identities=7% Similarity=0.025 Sum_probs=43.6
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhhee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHI 228 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I 228 (473)
..|++|||++|+++.++|+.+|....+.+. ....|.++.+..|..+...+ +...++|+.+.+.++..+++.+.+
T Consensus 151 ~PDl~I~Ldv~~e~~~~Ri~~R~~~dr~E~---~~~ef~~rv~~~Y~~la~~~-~~~~~vIDa~~s~eeV~~~I~~~l 224 (227)
T 3v9p_A 151 QPDLTVLFDVPPQIASARRGAVRMPDKFES---ESDAFFARTRAEYLRRAQEA-PHRFVIVDSSEPIAQIRKQLEGVL 224 (227)
T ss_dssp CCSEEEEEECCSSCGGGTTTCCCCC---CC---HHHHHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHhccCccchhh---hhHHHHHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHHHHHHHHHH
Confidence 468999999999999999988852222221 12334455555555543221 223577876655555555555444
No 118
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI, protein structure initiative, TB structural genomics consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP: c.61.1.1
Probab=98.70 E-value=2.8e-08 Score=91.02 Aligned_cols=124 Identities=21% Similarity=0.250 Sum_probs=86.5
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-----CceeeE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-----GIKIGK 340 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-----~a~~g~ 340 (473)
+..+|...+++|+..+.+..-...|. + ...++.++|+|.+.|..+...+.+.+. ..+++.
T Consensus 18 ~~~~i~~~i~~La~~i~~~~~~~~~~---------~------~~~~~~vvvgi~~gG~~~a~~La~~L~~~~g~p~~~~~ 82 (201)
T 1w30_A 18 SAANVGRTISRIAHQIIEKTALDDPV---------G------PDAPRVVLLGIPTRGVTLANRLAGNITEYSGIHVGHGA 82 (201)
T ss_dssp CHHHHHHHHHHHHHHHHHHTTTTSCC---------B------TTBCCEEEEECTTHHHHHHHHHHHHHHHHHSCCCEEEE
T ss_pred CHHHHHHHHHHHHHHHHHHccccccc---------c------ccCCCcEEEEEcccHHHHHHHHHHHHhHHHCCCcccce
Confidence 45678888888888777543211121 0 111467899999999999988888774 234555
Q ss_pred EEEE--EcCCCC--c-eEEeecCCC-CCCCcEEEEEcccccccHHHHHHHHHHHhcC-CCCCcEEEEEEEeCH
Q 035513 341 ILIH--REGNSG--R-QLIYQKLPA-DISSRHVLLLDPILASGNSAVKAISLILSKG-VPESNIIFLNLIAAP 406 (473)
Q Consensus 341 i~~~--r~~~~~--~-~~~~~~lP~-~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g-~~~~~i~~~~~~~~~ 406 (473)
+... |+..+. . ...+..+|. +++|++|+|+|++++||+|+.++++.|+++| + +.|.+++++..+
T Consensus 83 l~~~~y~~~~~~~~~~~~~~~~~~~~~~~gk~VlLVDDVitTG~Tl~aa~~~L~~~G~a--~~V~vavlv~k~ 153 (201)
T 1w30_A 83 LDITLYRDDLMIKPPRPLASTSIPAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRP--RAVQLAVLVDRG 153 (201)
T ss_dssp CCCGGGCC--------CCCCCBCCTTCSTTCEEEEEEEEESSSHHHHHHHHHHHHHCCC--SEEEEEEEEECC
T ss_pred EEEEEecCCccccccceeecccCCCccCCCCEEEEECCccchHHHHHHHHHHHHhCCCC--cEEEEEEEEecC
Confidence 5432 322211 1 233446664 4899999999999999999999999999999 7 789888888764
No 119
>1a3c_A PYRR, pyrimidine operon regulatory protein PYRR; transcription regulation, attenuation protein, RNA-binding P pyrimidine biosynthesis; 1.60A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 1a4x_A 2igb_A* 1xz8_A* 1non_A 1xzn_A*
Probab=98.70 E-value=2.5e-08 Score=89.79 Aligned_cols=93 Identities=20% Similarity=0.307 Sum_probs=70.2
Q ss_pred eeeEEEeeccCchhHHHHHhhcC-----CceeeEEEEEE--cCCC----C--ceEEeecCCCCCCCcEEEEEcccccccH
Q 035513 312 RLCGISIIRSGESMENALRACCK-----GIKIGKILIHR--EGNS----G--RQLIYQKLPADISSRHVLLLDPILASGN 378 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p-----~a~~g~i~~~r--~~~~----~--~~~~~~~lP~~~~~~~v~l~dp~~aTG~ 378 (473)
..++|++.+.|..+...+.+.+. .+.++++...+ ++.+ . .......++.+++|++|+|+|++++||+
T Consensus 33 ~~~iv~i~~~G~~~a~~la~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VllVDDvitTG~ 112 (181)
T 1a3c_A 33 NCILVGIKTRGIYLAKRLAERIEQIEGNPVTVGEIDITLYRDDLSKKTSNDEPLVKGADIPVDITDQKVILVDDVLYTGR 112 (181)
T ss_dssp -CEEEEESHHHHHHHHHHHHHHHHHHSSCCEEEEEEEECCC--------CCCCEEEEEECSSCCTTSEEEEEEEEESSSH
T ss_pred CeEEEEEcCCCHHHHHHHHHHHhHHhCCCcccCeEEEEEecCcccccCccceeeecccccCcCCCCCEEEEEeCccCcHH
Confidence 35788999999999888887765 24567766543 2211 1 2233446677899999999999999999
Q ss_pred HHHHHHHHHHhcC-CCCCcEEEEEEEeCH
Q 035513 379 SAVKAISLILSKG-VPESNIIFLNLIAAP 406 (473)
Q Consensus 379 t~~~~~~~L~~~g-~~~~~i~~~~~~~~~ 406 (473)
|+.++++.|+++| + +.|.+++++..+
T Consensus 113 Tl~~a~~~L~~~G~a--~~V~~~~l~~k~ 139 (181)
T 1a3c_A 113 TVRAGMDALVDVGRP--SSIQLAVLVDRG 139 (181)
T ss_dssp HHHHHHHHHHHHCCC--SEEEEEEEEECC
T ss_pred HHHHHHHHHHhcCCC--cEEEEEEEEccC
Confidence 9999999999997 7 788888888765
No 120
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=98.69 E-value=3.2e-08 Score=88.63 Aligned_cols=34 Identities=21% Similarity=0.173 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEE
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~i 64 (473)
++.+|+|+|++||||||+++.|++.+...++.++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i 37 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCY 37 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEE
Confidence 4688999999999999999999998732234444
No 121
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=98.69 E-value=7.6e-09 Score=93.46 Aligned_cols=171 Identities=17% Similarity=0.162 Sum_probs=85.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEE-EecCCCCCCCCHHHH---hhccCccCCCCccccHHHHHHHHHHhhcCCc
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVL-VNQDSFYHSLTDEKL---QNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~-is~D~~~~~~~~~~~---~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~~ 109 (473)
.|+|+||||||||||++.|.+.++. .+.+ ++. .+...+ .+..+|.|-+.+ ++...+.+++.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~-~~~~svs~------TTR~pR~gE~~G~dY~Fvs~~--------eF~~~i~~g~f 67 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPD-SFGFSVSS------TTRTPRAGEVNGKDYNFVSVD--------EFKSMIKNNEF 67 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTT-TEEECCCE------ECSCCCTTCCBTTTBEECCHH--------HHHHHHHTTCE
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCC-CeEEEEEE------eccCCCCCCcCCceeEeecHH--------HHHHHHHcCCE
Confidence 3789999999999999999888652 1211 110 011111 112234454332 22234455666
Q ss_pred eecccccccccccccc--ccccCCCcEEEEecccccCChhhhhcc--C-eEEEEecC-hhHHHHHhhhccccccCCChHH
Q 035513 110 VSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVRDLM--S-MKIFVDTD-SDVRLSRRIQRDTVERGRDIED 183 (473)
Q Consensus 110 i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~~~~--D-l~I~L~~~-~e~~~~R~~~R~~~~~~~~~~~ 183 (473)
+.+..+....+..... ...+..+..+|+|.-.... ..+...+ + ..||+..| .+++.+|+..|.. .+.+.
T Consensus 68 lE~~~~~g~~YGt~~~~v~~~l~~g~~vil~id~~g~-~~~k~~~~~~~~~Ifi~pps~e~L~~RL~~Rg~----e~~e~ 142 (186)
T 1ex7_A 68 IEWAQFSGNYYGSTVASVKQVSKSGKTCILDIDMQGV-KSVKAIPELNARFLFIAPPSVEDLKKRLEGRGT----ETEES 142 (186)
T ss_dssp EEEEEETTEEEEEEHHHHHHHHHHTSEEEEECCHHHH-HHHHTCGGGCCEEEEEECSCHHHHHHHHHHHCC----SCHHH
T ss_pred EEEEEEcCceeeeecceeeehhhCCCEEEecCCHHHH-HHHHHhcccCceEEEEeCCCHHHHHHHHHhcCC----CCHHH
Confidence 6655443333322111 1123345677777533222 2233322 2 56777665 5777777777732 23333
Q ss_pred HHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 184 VLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 184 ~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
+..++..... ....+ .....|++|.|+ +.+.+++++.+.|.
T Consensus 143 i~~Rl~~a~~-e~~~~---~~~~fD~vIvNd-dle~a~~~l~~iI~ 183 (186)
T 1ex7_A 143 INKRLSAAQA-ELAYA---ETGAHDKVIVND-DLDKAYKELKDFIF 183 (186)
T ss_dssp HHHHHHHHHH-HHHHH---TTTCSSEEEECS-SHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHhhc---cccCCcEEEECc-CHHHHHHHHHHHHH
Confidence 4333322211 11110 123468888887 67777777766654
No 122
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.66 E-value=7.8e-08 Score=93.46 Aligned_cols=37 Identities=24% Similarity=0.292 Sum_probs=31.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.+|.|+|++||||||+++.|++.+. ++.+++.|.+.
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~--~~~~i~~D~~r 38 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNP--GFYNINRDDYR 38 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHST--TEEEECHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCC--CcEEecccHHH
Confidence 46899999999999999999999752 48999998543
No 123
>3s5j_B Ribose-phosphate pyrophosphokinase 1; nucleotide synthesis, transferase; 2.02A {Homo sapiens} PDB: 2hcr_A* 3efh_A 2h06_A 2h07_A 2h08_A
Probab=98.66 E-value=4.2e-08 Score=95.70 Aligned_cols=135 Identities=16% Similarity=0.121 Sum_probs=93.4
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
++.++|++..+|..+...+.+.+. ++++.+.-+|... .+ .....+..+++|++|+|+|+|++||+|+.+|++.|+++
T Consensus 163 ~~~vVVspd~Ggv~~A~~lA~~L~-~~~~~i~K~r~~~-~~-v~~~~l~g~v~gk~viIVDDii~TG~Tl~~a~~~L~~~ 239 (326)
T 3s5j_B 163 RNCTIVSPDAGGAKRVTSIADRLN-VDFALIHKERKKA-NE-VDRMVLVGDVKDRVAILVDDMADTCGTICHAADKLLSA 239 (326)
T ss_dssp GGCEEEESSGGGHHHHHHHHHHHT-CEEEEEEEC---------CCEEEESCCTTSEEEEEEEEESSCHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCchHHHHHHHHHcC-CCEEEEEEEecCC-Ce-eeEEeccccCCCCEEEEEccccCCcHHHHHHHHHHHHc
Confidence 467888899999999888887763 4555443333222 11 11123566899999999999999999999999999999
Q ss_pred CCCCCcEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecCCCC---CCc----ceecCCCchhhhccCC
Q 035513 391 GVPESNIIFLNL--IAAPQGIHAICKRFPKIKIVTSEIDSSID---EHA----CVIPGMGEFGDRYFGT 450 (473)
Q Consensus 391 g~~~~~i~~~~~--~~~~~g~~~~~~~~p~v~i~~~~id~~l~---~~~----~i~PGlGd~gdr~fg~ 450 (473)
|+ ++|.+++. +.++.+++++.+...+--++|-.|...-+ -.+ -+-|=++++-.|.+..
T Consensus 240 Ga--~~v~~~~tH~v~~~~a~e~l~~~~i~~vv~t~tip~~~~~~~~~k~~~lsva~lla~aI~~i~~~ 306 (326)
T 3s5j_B 240 GA--TRVYAILTHGIFSGPAISRINNACFEAVVVTNTIPQEDKMKHCSKIQVIDISMILAEAIRRTHNG 306 (326)
T ss_dssp TC--SEEEEEEEEECCCTTHHHHHHHSCCSEEEEETTSCCHHHHHTCTTEEEECCHHHHHHHHHHHHHT
T ss_pred CC--CEEEEEEEecccCchHHHHHhhCCCCEEEEecCCCChhhhccCCCeEEEEcHHHHHHHHHHHHcC
Confidence 99 68888885 66899999999876666677766653211 111 1334556666776653
No 124
>3acd_A Hypoxanthine-guanine phosphoribosyltransferase; rossmann fold, structural genomics, NPPSFA; HET: IMP; 1.89A {Thermus thermophilus} PDB: 3acc_A* 3acb_A*
Probab=98.66 E-value=1e-07 Score=85.42 Aligned_cols=117 Identities=15% Similarity=0.227 Sum_probs=89.6
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-CceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-GIKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~~ 344 (473)
+..+.++.++||+.-+.+. . .| +++++|.|++.|..|..-+.+.+. ...+.++.++
T Consensus 15 s~~~I~~~i~rlA~eI~e~----~---------------~~----~~~vlvgIl~Gg~~fa~~L~~~l~~~~~~~~i~~s 71 (181)
T 3acd_A 15 SAEAIKKRVEELGGEIARD----Y---------------QG----KTPHLICVLNGAFIFMADLVRAIPLPLTMDFIAIS 71 (181)
T ss_dssp CHHHHHHHHHHHHHHHHHH----T---------------TT----CCCEEEEEETTTHHHHHHHHTTCCSCCEEEEEEEC
T ss_pred CHHHHHHHHHHHHHHHHHH----h---------------CC----CCcEEEEEecCcHHHHHHHHHhcCCCccccceEEE
Confidence 4457777888887766542 1 11 457889999999999988888876 6678888887
Q ss_pred EcCC----CCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHH
Q 035513 345 REGN----SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQ 407 (473)
Q Consensus 345 r~~~----~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~ 407 (473)
+... +++......++.+++|++|+|+|+++.||.|+.++++.|.++|+ ++|.+++++-.+.
T Consensus 72 sy~~~~~~~g~~~~~~~~~~~i~gk~VllVDDIldTG~Tl~~~~~~l~~~~p--~sv~~avLl~K~~ 136 (181)
T 3acd_A 72 SYGNAFKSSGEVELLKDLRLPIHGRDVIVVEDIVDTGLTLSYLLDYLEARKP--ASVRVAALLSKPS 136 (181)
T ss_dssp ------------CEEECCCSCCTTCEEEEEEEEESSSHHHHHHHHHHHTTCC--SEEEEEEEEECGG
T ss_pred EecCCcCCCCceEeccCCCcccCCCeeEEEEEEEcCchhHHHHHHHHhcCCC--CEEEEEEEEEcCc
Confidence 7543 22344456788899999999999999999999999999999987 7899999998765
No 125
>1ufr_A TT1027, PYR mRNA-binding attenuation protein; pyrimidine nucleotide biosynthesis, transcriptional attenuation, RNA-binding protein; 2.60A {Thermus thermophilus} SCOP: c.61.1.1
Probab=98.66 E-value=5.7e-08 Score=87.46 Aligned_cols=93 Identities=20% Similarity=0.380 Sum_probs=68.5
Q ss_pred eeeEEEeeccCchhHHHHHhhcC-----CceeeEEEEE--EcCCC--C--ceEEeecCCCCCCCcEEEEEcccccccHHH
Q 035513 312 RLCGISIIRSGESMENALRACCK-----GIKIGKILIH--REGNS--G--RQLIYQKLPADISSRHVLLLDPILASGNSA 380 (473)
Q Consensus 312 ~~~~v~ilraG~~~~~~~~~~~p-----~a~~g~i~~~--r~~~~--~--~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~ 380 (473)
+.++|||.+.|..+...+.+.+. ....+.+... +++.+ . .......++.+++|++|+|+|++++||+|+
T Consensus 33 ~~~iv~v~~rG~~~a~~la~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~gk~VllVDDvitTG~Tl 112 (181)
T 1ufr_A 33 GLALVGIHTRGIPLAHRIARFIAEFEGKEVPVGVLDITLYRDDLTEIGYRPQVRETRIPFDLTGKAIVLVDDVLYTGRTA 112 (181)
T ss_dssp TEEEEEETTTHHHHHHHHHHHHHHHHCSCCCEEEEEEEC-----------CEEEEEEECSCCTTCEEEEEEEEESSSHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHhHHhCCCcccCeEEEEEecCccccccccceecccccCcCCCCCEEEEEecCCCcHHHH
Confidence 46788999999999888877664 3345566542 22211 1 122234466788999999999999999999
Q ss_pred HHHHHHHHhcC-CCCCcEEEEEEEeCH
Q 035513 381 VKAISLILSKG-VPESNIIFLNLIAAP 406 (473)
Q Consensus 381 ~~~~~~L~~~g-~~~~~i~~~~~~~~~ 406 (473)
.++++.|+++| + ++|.+++++..+
T Consensus 113 ~~a~~~L~~~G~a--~~V~~~~l~~~~ 137 (181)
T 1ufr_A 113 RAALDALIDLGRP--RRIYLAVLVDRG 137 (181)
T ss_dssp HHHHHHHHHHCCC--SEEEEEEEEECC
T ss_pred HHHHHHHHhcCCC--cEEEEEEEEcCC
Confidence 99999999999 7 789888888776
No 126
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=98.66 E-value=9.8e-09 Score=96.04 Aligned_cols=32 Identities=22% Similarity=0.351 Sum_probs=21.7
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHH-HHhC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMII-SRLR 57 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La-~~l~ 57 (473)
|++.+++.+|+|+|++||||||+++.|+ ..++
T Consensus 21 sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 21 SMLKSVGVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp -CCEECCCEEEEECSCC----CHHHHHHC----
T ss_pred CcccCCCCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 7788888999999999999999999999 8765
No 127
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=98.65 E-value=6.3e-08 Score=88.94 Aligned_cols=79 Identities=14% Similarity=0.178 Sum_probs=44.2
Q ss_pred cCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeec
Q 035513 152 MSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 152 ~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
.|++|||++|+++.++|+.+|... .++ .+.....|.++.+..|..+.... +.--++||.+.+.++..+++.+.|...
T Consensus 125 PDl~i~Ld~~~e~~~~Ri~~r~~~-~dr-~e~~~~~f~~~v~~~Y~~l~~~~-~~~~~~IDa~~~~e~V~~~i~~~i~~~ 201 (205)
T 4hlc_A 125 PDLTIYLNVSAEVGRERIIKNSRD-QNR-LDQEDLKFHEKVIEGYQEIIHNE-SQRFKSVNADQPLENVVEDTYQTIIKY 201 (205)
T ss_dssp CSEEEEEECCHHHHHHHHHC---------CCHHHHHHHHHHHHHHHHHHHSC-CTTEEEEETTSCHHHHHHHHHHHHHHH
T ss_pred CCEEeeeCCCHHHHHHHHHhcCCc-ccc-hhccCHHHHHHHHHHHHHHHHhC-CCCEEEEECCCCHHHHHHHHHHHHHHH
Confidence 589999999999999999887432 111 11222234455555555543221 112356776655566666666666655
Q ss_pred cc
Q 035513 232 LG 233 (473)
Q Consensus 232 l~ 233 (473)
|+
T Consensus 202 L~ 203 (205)
T 4hlc_A 202 LE 203 (205)
T ss_dssp HC
T ss_pred Hh
Confidence 43
No 128
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=98.64 E-value=3.2e-08 Score=98.25 Aligned_cols=52 Identities=13% Similarity=0.199 Sum_probs=45.7
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|..+|+++|+++ +...|+++ ++..+++.+++|.||+||||||+.+.|+..+.
T Consensus 1 M~~~l~i~~ls~~y~~~~~L~~v-----sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 55 (359)
T 3fvq_A 1 MTAALHIGHLSKSFQNTPVLNDI-----SLSLDPGEILFIIGASGCGKTTLLRCLAGFEQ 55 (359)
T ss_dssp --CCEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEEESTTSSHHHHHHHHHTSSC
T ss_pred CCcEEEEEeEEEEECCEEEEEee-----EEEEcCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 767899999977 46689999 99999999999999999999999999998764
No 129
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=98.64 E-value=4.3e-09 Score=96.22 Aligned_cols=73 Identities=10% Similarity=0.172 Sum_probs=40.2
Q ss_pred cCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeec
Q 035513 152 MSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 152 ~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
.|+++|+++|+++.++|...|+..+ .. .|.++.+..|....... ..--++||.+.+.++..+++++.|++.
T Consensus 122 PDl~i~Ld~~~e~~~~R~~~~dr~e---~~-----ef~~rv~~~y~~la~~~-~~~~~~IDa~~~~eeV~~~I~~~i~~r 192 (197)
T 3hjn_A 122 PDLTFYIDVDVETALKRKGELNRFE---KR-----EFLERVREGYLVLAREH-PERIVVLDGKRSIEEIHRDVVREVKRR 192 (197)
T ss_dssp CSEEEEEECCHHHHHHHC---CTTC---CH-----HHHHHHHHHHHHHHHHC-TTTEEEEETTSCHHHHHHHHHHHHSCC
T ss_pred CCceeecCcChHHHHHhCcCcCccc---cH-----HHHHHHHHHHHHHHHhC-CCCEEEEcCCCCHHHHHHHHHHHHHHH
Confidence 5899999999999999977665322 21 23333333333332111 111356776656666667777777665
Q ss_pred cc
Q 035513 232 LG 233 (473)
Q Consensus 232 l~ 233 (473)
++
T Consensus 193 l~ 194 (197)
T 3hjn_A 193 WK 194 (197)
T ss_dssp --
T ss_pred hC
Confidence 53
No 130
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=98.64 E-value=3e-08 Score=91.38 Aligned_cols=42 Identities=26% Similarity=0.362 Sum_probs=33.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCC--EEEEecCCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR-DQR--VVLVNQDSFY 70 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~--~~~is~D~~~ 70 (473)
..++.+|+|.|++||||||+++.|++.++ ..| +.+++.|.+.
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 34578999999999999999999999886 333 7777766654
No 131
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=98.62 E-value=6.6e-08 Score=91.85 Aligned_cols=35 Identities=26% Similarity=0.213 Sum_probs=32.3
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.+|+|+|++||||||+|+.|++.++ +.+++.|++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~---~~~i~~D~~~ 36 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETG---WPVVALDRVQ 36 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHC---CCEEECCSGG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCC---CeEEeccHHh
Confidence 5899999999999999999999997 8899999964
No 132
>3dah_A Ribose-phosphate pyrophosphokinase; pyrophosphoki seattle structural genomics center for infectious disease, magnesium, metal binding; HET: AMP; 2.30A {Burkholderia pseudomallei}
Probab=98.62 E-value=6.8e-08 Score=94.09 Aligned_cols=113 Identities=14% Similarity=0.145 Sum_probs=76.8
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
++.++|++..+|..+...+.+.+ ++++..+.-+|...+ . ..-..++.+++|++|+|+|+|++||+|+.+|++.|+++
T Consensus 166 ~~~vVVspd~Ggv~~A~~lA~~L-~~p~~~i~K~r~~~~-~-v~~~~i~g~v~gk~viiVDDii~TG~Tl~~a~~~L~~~ 242 (319)
T 3dah_A 166 PDLLVVSPDVGGVVRARALAKQL-NCDLAIIDKRRPKAN-V-AEVMNIIGEVEGRTCVIMDDMVDTAGTLCKAAQVLKER 242 (319)
T ss_dssp TTEEEECCSSTTHHHHHHHHHHT-TCEEEC----------------------CCSEEEEEEEEESSCHHHHHHHHHHHHT
T ss_pred CCcEEEEeCCCccHHHHHHHHHh-CCCEEEEEEEeccCC-c-eEEEEccccCCCCEEEEEecccCchHHHHHHHHHHHHc
Confidence 45788888889999988888877 355554433332211 1 11235667899999999999999999999999999999
Q ss_pred CCCCCcEEEEEE--EeCHHHHHHHHHhCCCcEEEEEeecC
Q 035513 391 GVPESNIIFLNL--IAAPQGIHAICKRFPKIKIVTSEIDS 428 (473)
Q Consensus 391 g~~~~~i~~~~~--~~~~~g~~~~~~~~p~v~i~~~~id~ 428 (473)
|+ ++|.+++. +.++.+++++.+...+--++|-.|-.
T Consensus 243 Ga--~~v~~~~tH~v~s~~a~~~l~~~~i~~vv~t~tip~ 280 (319)
T 3dah_A 243 GA--KQVFAYATHPVLSGGAADRIAASALDELVVTDTIPL 280 (319)
T ss_dssp TC--SCEEEEEEEECCCTTHHHHHHTSSCSEEEEESSSCC
T ss_pred CC--CEEEEEEEeecCChHHHHHHHhCCCCEEEEeccccC
Confidence 99 67888885 55889999998766666666766543
No 133
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=98.59 E-value=1.9e-07 Score=84.26 Aligned_cols=43 Identities=16% Similarity=0.231 Sum_probs=33.9
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+..+++.+|+|.|++||||||+++.|+..+ ..+..+++.|++.
T Consensus 4 ~~i~~g~~i~l~G~~GsGKSTl~~~La~~~-~~g~i~i~~d~~~ 46 (191)
T 1zp6_A 4 TDDLGGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLW 46 (191)
T ss_dssp --CCTTEEEEEEECTTSCHHHHHHHHHTCS-SSCEEEECTTHHH
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHhcc-CCCeEEEcccchh
Confidence 455678899999999999999999999874 3456778877654
No 134
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=98.58 E-value=1e-08 Score=95.22 Aligned_cols=73 Identities=16% Similarity=0.110 Sum_probs=35.6
Q ss_pred ccCeEEEEecChhHHHHHhhhccccccCCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 151 ~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
..|++|||++|+++.++|+ +|+..+. ....|.++.+..|..+...+ +...++|+++.+.++. +++.+.+..
T Consensus 145 ~PDl~I~Ldv~~e~~~~Ri-~rdr~E~------~~~e~~~rv~~~y~~la~~~-~~~~~vIDa~~sieeV-~~I~~~l~~ 215 (223)
T 3ld9_A 145 YPDITFIIDVDINESLSRS-CKNGYEF------ADMEFYYRVRDGFYDIAKKN-PHRCHVITDKSETYDI-DDINFVHLE 215 (223)
T ss_dssp CCSEEEEEECC-----------------------CHHHHHHHHHHHHHHHHHC-TTTEEEEESSCSSSCC-CHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHh-ccCcccc------chHHHHHHHHHHHHHHHHHC-CCCEEEEcCCCCHHHH-HHHHHHHHH
Confidence 5699999999999999998 5543221 11234444444444443222 2357888887666666 777776665
Q ss_pred cc
Q 035513 231 KL 232 (473)
Q Consensus 231 ~l 232 (473)
.+
T Consensus 216 ~l 217 (223)
T 3ld9_A 216 VI 217 (223)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 135
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=98.52 E-value=4.3e-08 Score=91.41 Aligned_cols=52 Identities=15% Similarity=0.178 Sum_probs=46.0
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ ....|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 m~~~l~~~~l~~~y~~~~~l~~v-----sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 1 MAEILRAENIKKVIRGYEILKGI-----SLSVKKGEFVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp -CEEEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEEECTTSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEeEEEEECCEeeEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 777899999977 45689999 99999999999999999999999999998765
No 136
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=98.52 E-value=9.1e-08 Score=86.92 Aligned_cols=164 Identities=16% Similarity=0.114 Sum_probs=83.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHH-hhccCccCCC--CccccHHHHHHHHHHh
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL-QNLHDYNFDH--PDAFDTELLLSDMEKL 104 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~-~~~~~~~f~~--~~~~d~~~l~~~l~~l 104 (473)
+...+.+|+|+|.+||||+|+|+.|.+.++..++.++++.+..+....... ........+. .+.+ ...+.+.-..+
T Consensus 7 ~~~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~a~~~gl~~~~~l~~~~ykE~~-R~~m~~~g~~~ 85 (202)
T 3ch4_B 7 GGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQYAQEHGLNFQRLLDTSTYKEAF-RKDMIRWGEEK 85 (202)
T ss_dssp BCCCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHHHHTTTCCCC-------CCSSH-HHHHHHHHHHH
T ss_pred ccCCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHHHHHcCCCchhhcchhhhHHHH-HHHHHHHHHHH
Confidence 345678999999999999999999998885445888887665531110000 0000000000 0111 11222221222
Q ss_pred hcCCceeccccccccccccccccccCCCcEEEEecccccCChhh-hhcc-C--eEEEEecChhHHHHHhhhccccccCCC
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV-RDLM-S--MKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~-~~~~-D--l~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
... -|.+ ..+... .....+++|++|+-...+-.+ +..+ . .+|++.+++++|++|...+. .+.+
T Consensus 86 R~~----d~~~----~~~~~~--~~~~~~~vII~dvR~~~Ev~~fr~~~g~~~~iirI~as~~~R~~Rg~~~~---~~~D 152 (202)
T 3ch4_B 86 RQA----DPGF----FCRKIV--EGISQPIWLVSDTRRVSDIQWFREAYGAVTQTVRVVALEQSRQQRGWVFT---PGVD 152 (202)
T ss_dssp HHH----CTTT----THHHHS--BTCCCSEEEECCCCSHHHHHHHHHHHGGGEEEEEEEECHHHHHHTTCCCC---TTTT
T ss_pred Hhc----CchH----HHHHHH--HhcCCCcEEEeCCCCHHHHHHHHHhCCCcEEEEEEECCHHHHHHHhhhcc---cccc
Confidence 210 0111 000000 011345899999876554433 2332 2 47999999999999954331 1111
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCch
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDND 218 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~ 218 (473)
... . +.-+... ..+|++|.|+++.+
T Consensus 153 d~e--s----------E~gL~~~-~~~D~vI~Ndgt~e 177 (202)
T 3ch4_B 153 DAE--S----------ECGLDNF-GDFDWVIENHGVEQ 177 (202)
T ss_dssp TSH--H----------HHTTTTC-CCCSEEEEECSCHH
T ss_pred ccc--c----------ccCCCCC-CcCCEEEEeCCCHH
Confidence 111 0 1112222 57999999886544
No 137
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.52 E-value=9.2e-08 Score=97.56 Aligned_cols=41 Identities=24% Similarity=0.325 Sum_probs=35.9
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
.....++.+|.|+|+|||||||+|+.|++.++ +.+++.|.+
T Consensus 252 ~~~~~~~~lIil~G~pGSGKSTla~~L~~~~~---~~~i~~D~~ 292 (416)
T 3zvl_A 252 SLLSPNPEVVVAVGFPGAGKSTFIQEHLVSAG---YVHVNRDTL 292 (416)
T ss_dssp CSCCSSCCEEEEESCTTSSHHHHHHHHTGGGT---CEECCGGGS
T ss_pred ccCCCCCEEEEEECCCCCCHHHHHHHHHHhcC---cEEEccchH
Confidence 44556778999999999999999999999886 899999886
No 138
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=98.51 E-value=3.6e-08 Score=88.54 Aligned_cols=27 Identities=15% Similarity=0.270 Sum_probs=23.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++.+|+|+|+|||||||+++.|++.++
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 346899999999999999999998764
No 139
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=98.51 E-value=5.8e-08 Score=102.19 Aligned_cols=40 Identities=28% Similarity=0.525 Sum_probs=32.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
+.+.+|+++|++||||||+|+.|++.++. ..+.+++.|.+
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 34689999999999999999999998762 33677777654
No 140
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=98.50 E-value=2.9e-07 Score=90.23 Aligned_cols=40 Identities=20% Similarity=0.432 Sum_probs=35.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC--CCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF--YHSL 73 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~--~~~~ 73 (473)
++.+|+|+||+|||||||+..|+++++ ..+||.|++ |+.+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l~---~eiIs~Ds~qvYr~m 80 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHFP---LEVINSDKMQVYKGL 80 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTSC---EEEEECCSSTTBSSC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHCC---CcEEcccccccccce
Confidence 457999999999999999999999987 899999985 4444
No 141
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=98.49 E-value=1.1e-07 Score=90.71 Aligned_cols=52 Identities=19% Similarity=0.133 Sum_probs=45.7
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ +...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 21 m~~~l~i~~l~~~y~~~~vL~~v-----sl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 21 MLQMIDVHQLKKSFGSLEVLKGI-----NVHIREGEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp -CCSEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred chheEEEEeEEEEECCEEEEEee-----EEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 556899999977 35689999 99999999999999999999999999998765
No 142
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=98.48 E-value=2.3e-09 Score=101.10 Aligned_cols=27 Identities=22% Similarity=0.423 Sum_probs=25.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++++|+|.|++||||||+++.|++.++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 468999999999999999999999985
No 143
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=98.47 E-value=8.9e-08 Score=95.80 Aligned_cols=51 Identities=14% Similarity=0.170 Sum_probs=45.2
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 M~~l~~~~l~~~yg~~~~L~~v-----sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 1 MASVQLQNVTKAWGEVVVSKDI-----NLDIHEGEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp -CCEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEeEEEEECCEEEEeee-----EEEECCCCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 13799999977 56689999 99999999999999999999999999998764
No 144
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=98.46 E-value=7e-08 Score=92.68 Aligned_cols=50 Identities=22% Similarity=0.312 Sum_probs=44.4
Q ss_pred cceeeccccc---c-cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---D-DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~-~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ + ...|+++ +++.+++.+++|.|++||||||+.+.|+..+.
T Consensus 6 ~~l~i~~ls~~y~~~~~~L~~i-----sl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 6 YILKVEELNYNYSDGTHALKGI-----NMNIKRGEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp EEEEEEEEEEECTTSCEEEEEE-----EEEEETTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cEEEEEEEEEEECCCCeEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 4899999977 2 3489999 99999999999999999999999999998764
No 145
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.44 E-value=2.9e-07 Score=86.64 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=44.6
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 5 ~~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 5 IVLEVQSLHVYYGAIHAIKGI-----DLKVPRGQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEeEEEEECCeeEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4899999976 45689999 99999999999999999999999999998764
No 146
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=98.44 E-value=1.6e-07 Score=93.27 Aligned_cols=52 Identities=19% Similarity=0.253 Sum_probs=44.7
Q ss_pred Cccceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ + ...|+++ |+..+++.+++|.|++|||||||.+.|+..+.
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~v-----sl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~ 79 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNV-----SLHVPAGQIYGVIGASGAGKSTLIRCVNLLER 79 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEee-----EEEEcCCCEEEEEcCCCchHHHHHHHHhcCCC
Confidence 356899999977 2 2479999 99999999999999999999999999998765
No 147
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=98.43 E-value=2.8e-07 Score=92.08 Aligned_cols=49 Identities=18% Similarity=0.182 Sum_probs=44.1
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 11 ~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 11 EVKLENLTKRFGNFTAVNKL-----NLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp CEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEEEEEEECCEEEEeee-----EEEECCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 699999977 34589999 99999999999999999999999999998764
No 148
>2ji4_A Phosphoribosyl pyrophosphate synthetase-associated protein 2; phosphorylation, nucleotide biosynthesis, transferase; 2.55A {Homo sapiens} PDB: 2c4k_A*
Probab=98.43 E-value=5e-07 Score=90.33 Aligned_cols=113 Identities=13% Similarity=0.150 Sum_probs=80.1
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC-------CC--ceE--------------------EeecCCCC
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGN-------SG--RQL--------------------IYQKLPAD 361 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~-------~~--~~~--------------------~~~~lP~~ 361 (473)
++.++|++.++|.++...+.+.+. ++.+.+-.+|... .. +.+ .-..++.+
T Consensus 191 ~~~vVV~pd~GGv~~A~~lA~~L~-~pl~ii~k~r~~~~~e~~~gr~~~~~v~~~~~~~~g~~i~~~~~~~~~~~~l~g~ 269 (379)
T 2ji4_A 191 RNAVIVAKSPASAKRAQSFAERLR-LGIAVIHGEAQDAESDLVDGRHSPPMVRSVAAIHPSLEIPMLIPKEKPPITVVGD 269 (379)
T ss_dssp GGEEEEESSGGGHHHHHHHHHHTT-CEEEEEC-----------------------------------------CCCEESC
T ss_pred CCcEEEEEccchHHHHHHHHHHhC-CCEEEEEEEeecccccccccccCCcccccccccccccchhhhhhhcccccccccC
Confidence 456888889999999888887773 4555544444320 00 000 01134567
Q ss_pred CCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEE--EeCHHHHHHHHHhCCCcEEEEEee
Q 035513 362 ISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNL--IAAPQGIHAICKRFPKIKIVTSEI 426 (473)
Q Consensus 362 ~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~--~~~~~g~~~~~~~~p~v~i~~~~i 426 (473)
++|++|+|+|||++||+|+.+|++.|+++|+ ++|.+++. +.++.+.+++.+...+--++|-.+
T Consensus 270 v~Gk~viiVDDii~TG~Tl~~a~~~L~~~Ga--~~v~~~~tH~v~s~~a~~~l~~s~id~vvvTnti 334 (379)
T 2ji4_A 270 VGGRIAIIVDDIIDDVDSFLAAAETLKERGA--YKIFVMATHGLLSSDAPRRIEESAIDEVVVTNTI 334 (379)
T ss_dssp CTTSEEEEEEEEECSCHHHHHHHHHHHHTTC--CEEEEEEEEECCCTTHHHHHHHSSCCEEEEESSS
T ss_pred CCCCEEEEEecCCCchHHHHHHHHHHHhcCC--CEEEEEEEeecCCcHHHHHHHhCCCCEEEEecCC
Confidence 9999999999999999999999999999999 67877774 568899999988665666666555
No 149
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=98.43 E-value=2e-07 Score=92.71 Aligned_cols=51 Identities=18% Similarity=0.219 Sum_probs=44.6
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ +...|+++ ++..+.+.+++|.|++||||||+.+.|+..+.
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 1 MP-SIRVVNLKKYFGKVKAVDGV-----SFEVKDGEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp -C-CEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred Cc-EEEEEEEEEEECCEEEEeee-----EEEEcCCCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 53 799999977 44589999 99999999999999999999999999998764
No 150
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=98.43 E-value=1.1e-07 Score=87.91 Aligned_cols=189 Identities=19% Similarity=0.199 Sum_probs=91.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHH--HH-hhccCccCC-CCcc------ccH-HHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDE--KL-QNLHDYNFD-HPDA------FDT-ELL 97 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~--~~-~~~~~~~f~-~~~~------~d~-~~l 97 (473)
++++.+|.|.|++||||||+++.|++.++. ....+..- ..-+.. .. .-+....+. ++.+ .++ +..
T Consensus 2 m~~g~~i~~eG~~g~GKst~~~~l~~~l~~-~~~~~~ep---~~~t~~g~~ir~~l~~~~~~~~~~~~~llf~a~R~~~~ 77 (216)
T 3tmk_A 2 MGRGKLILIEGLDRTGKTTQCNILYKKLQP-NCKLLKFP---ERSTRIGGLINEYLTDDSFQLSDQAIHLLFSANRWEIV 77 (216)
T ss_dssp CCCCCEEEEEECSSSSHHHHHHHHHHHHCS-SEEEEESS---CTTSHHHHHHHHHHHCTTSCCCHHHHHHHHHHHHHTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcc-cceEEEec---CCCChHHHHHHHHHHhcccCCCHHHHHHHHHHHHHHHH
Confidence 346789999999999999999999999974 23333211 001111 01 111100000 0000 011 101
Q ss_pred HHHHHHhhcCCceeccccccccccccccccccCCCcEEEEecccccCChhhhhccCeEEEE-ecChhHHHHHhhhccccc
Q 035513 98 LSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFV-DTDSDVRLSRRIQRDTVE 176 (473)
Q Consensus 98 ~~~l~~l~~g~~i~~p~~~~~~~~~~~~~~~~~~~~viIlEG~~~l~~~~~~~~~Dl~I~L-~~~~e~~~~R~~~R~~~~ 176 (473)
......+..|..|....|-.+...- .....+.... ++ +..-. ..-....|++||| ++|+++.++|...|. .
T Consensus 78 ~~I~paL~~g~~VI~DRy~~S~~ay-q~~~~l~~~~---~~-~l~~~-~~~~~~PDlti~L~dv~pe~~~~R~~~~~--d 149 (216)
T 3tmk_A 78 DKIKKDLLEGKNIVMDRYVYSGVAY-SAAKGTNGMD---LD-WCLQP-DVGLLKPDLTLFLSTQDVDNNAEKSGFGD--E 149 (216)
T ss_dssp HHHHHHHHTTCEEEEESCHHHHHHH-HHTTCCTTCC---HH-HHHGG-GTTSBCCSEEEEEECSCCSCGGGCCSSSC--C
T ss_pred HHHHHHHHcCCEEEEeccHhHHHHH-HHhcCCCHHH---HH-HHHHH-hhCCCCCCEEEEEeCCCHHHHHHHhccCc--c
Confidence 1222344556656655553332110 0000001000 01 00000 0011345899999 999999998865431 2
Q ss_pred cCCChHHHHHHHHhhcccchhhhcCC---ccccccEecc-cCCCchhhhhhhhheeeecccc
Q 035513 177 RGRDIEDVLDQYARFVKPSFEEFILP---SKKYADIIIP-RGGDNDVAIDLIVQHILTKLGQ 234 (473)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~i~~---~~~~ad~vI~-~~~~~~~~i~~i~~~I~~~l~~ 234 (473)
+.+. ..|.++.+..|..+... +.+..-++|| .+.+.++..+++.+.|...+..
T Consensus 150 r~E~-----~~f~~rvr~~Y~~la~~~~~~~~~~~~vID~a~~s~eeV~~~I~~~i~~~l~~ 206 (216)
T 3tmk_A 150 RYET-----VKFQEKVKQTFMKLLDKEIRKGDESITIVDVTNKGIQEVEALIWQIVEPVLST 206 (216)
T ss_dssp TTCC-----HHHHHHHHHHHHHHHHHHHHTTCCSEEEEECTTCCHHHHHHHHHHHHHHHHHS
T ss_pred cccH-----HHHHHHHHHHHHHHHHhccccCCCCEEEEeCCCCCHHHHHHHHHHHHHHHHhc
Confidence 2221 25666666666666432 1223356777 5556666667777766665543
No 151
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=98.42 E-value=1.5e-07 Score=89.49 Aligned_cols=50 Identities=18% Similarity=0.278 Sum_probs=45.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 14 ~~l~i~~l~~~y~~~~vl~~v-----sl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 14 GAVVVKDLRKRIGKKEILKGI-----SFEIEEGEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp CCEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CeEEEEEEEEEECCEEEEEee-----EEEEcCCcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5899999977 45689999 99999999999999999999999999998764
No 152
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=98.42 E-value=2.2e-07 Score=88.23 Aligned_cols=142 Identities=13% Similarity=0.156 Sum_probs=85.2
Q ss_pred Cccceeeccccc--c--cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--------CCEEEEecCC
Q 035513 1 METVIELADDFA--D--DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD--------QRVVLVNQDS 68 (473)
Q Consensus 1 m~~~i~~~~~~~--~--~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--------~~~~~is~D~ 68 (473)
|+.+|+++|+++ + ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.. ..+.++..+.
T Consensus 1 M~~~l~i~~l~~~y~~~~~vl~~i-----sl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~~~i~~v~q~~ 75 (253)
T 2nq2_C 1 MNKALSVENLGFYYQAENFLFQQL-----NFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVYQSIGFVPQFF 75 (253)
T ss_dssp -CEEEEEEEEEEEETTTTEEEEEE-----EEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEECSCEEEECSCC
T ss_pred CCceEEEeeEEEEeCCCCeEEEEE-----EEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEeccEEEEcCCC
Confidence 777899999976 3 3589999 999999999999999999999999999987642 2345666653
Q ss_pred -CCCCCCHHHHhhccCcc----CCCCccccHHHHHHHHHHhhcCCce--eccccccccccccccccc-cCCCcEEEEecc
Q 035513 69 -FYHSLTDEKLQNLHDYN----FDHPDAFDTELLLSDMEKLKHGQAV--SIPDYDFKSHKRKQQSRL-INPSDVFILEGI 140 (473)
Q Consensus 69 -~~~~~~~~~~~~~~~~~----f~~~~~~d~~~l~~~l~~l~~g~~i--~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~ 140 (473)
++..++..+.-.+.... +..+...+.+.+.+.++.+.-.... ....++....+++.-++. +.+++++++|.+
T Consensus 76 ~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~lllLDEP 155 (253)
T 2nq2_C 76 SSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECKLILLDEP 155 (253)
T ss_dssp CCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCSEEEESSS
T ss_pred ccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 23233433322221110 1011222233444455443211111 112344444455544433 568999999988
Q ss_pred cccCChh
Q 035513 141 LVLHDPR 147 (473)
Q Consensus 141 ~~l~~~~ 147 (473)
....++.
T Consensus 156 ts~LD~~ 162 (253)
T 2nq2_C 156 TSALDLA 162 (253)
T ss_dssp STTSCHH
T ss_pred cccCCHH
Confidence 8877763
No 153
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=98.42 E-value=1.1e-07 Score=89.85 Aligned_cols=38 Identities=24% Similarity=0.378 Sum_probs=30.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.++.+|+|.|++||||||+++.|++.++ ...++.|++.
T Consensus 25 ~~~~~i~l~G~~GsGKSTl~k~La~~lg---~~~~~~G~i~ 62 (246)
T 2bbw_A 25 SKLLRAVILGPPGSGKGTVCQRIAQNFG---LQHLSSGHFL 62 (246)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHC---CCCEEHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhC---CeEecHHHHH
Confidence 3467999999999999999999999987 5556655543
No 154
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=98.41 E-value=2.5e-07 Score=92.20 Aligned_cols=51 Identities=22% Similarity=0.261 Sum_probs=45.2
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 m~-~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 1 MV-EIKLENIVKKFGNFTALNNI-----NLKIKDGEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp CC-CEEEEEEEEESSSSEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred Cc-EEEEEeEEEEECCEEEEEee-----EEEECCCCEEEEECCCCchHHHHHHHHhcCCC
Confidence 53 799999977 34589999 99999999999999999999999999998764
No 155
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase; glycosyltransferase, purine salvage, FLIP pepti; HET: 5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A* 2jky_A*
Probab=98.41 E-value=7.2e-07 Score=82.73 Aligned_cols=95 Identities=23% Similarity=0.231 Sum_probs=71.0
Q ss_pred eeEEEeeccCchhHHHHHhhcC-----CceeeEEEEEE--cCCC--------Cce-E--Eeec---CCCCCCCcEEEEEc
Q 035513 313 LCGISIIRSGESMENALRACCK-----GIKIGKILIHR--EGNS--------GRQ-L--IYQK---LPADISSRHVLLLD 371 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p-----~a~~g~i~~~r--~~~~--------~~~-~--~~~~---lP~~~~~~~v~l~d 371 (473)
.++|.|+|+|..+...+.+.+. ..+++.+.++. +..+ +.. . .|.. ++.+++|++|+|+|
T Consensus 31 ~vIVgI~~GG~~~A~~La~~L~~~~~~~lpi~~i~~s~y~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~v~Gk~VLIVD 110 (221)
T 2xbu_A 31 DLIIAIGGGGFIPARILRTFLKEPGVPTIRIFAIILSLYEDLNSVGSEVEEVGVKVSRTQWIDYEQCKLDLVGKNVLIVD 110 (221)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHCCTTSCCCEEEEEEEEEEC-------------CEEEEEECCCHHHHTCCCTTCEEEEEE
T ss_pred CEEEEECCCcHHHHHHHHHHhCCCCCCCccEEEEEEEEecCCccccccccccCceeeeeeeeecccccccCCCCEEEEEe
Confidence 4788999999999988888763 45788887653 2111 111 1 1122 46789999999999
Q ss_pred ccccccHHHHHHHHHHHh--------cCCC-------CCcEEEEEEEeCHH
Q 035513 372 PILASGNSAVKAISLILS--------KGVP-------ESNIIFLNLIAAPQ 407 (473)
Q Consensus 372 p~~aTG~t~~~~~~~L~~--------~g~~-------~~~i~~~~~~~~~~ 407 (473)
++++||+|+.+|++.|++ +|.. +.+|.+++++..+.
T Consensus 111 DIidTG~Tl~aa~~~L~~~ga~~~~~~g~~~~~~~~~~~~v~iavL~~K~~ 161 (221)
T 2xbu_A 111 EVDDTRTTLHYALSELEKDAAEQAKAKGIDTEKSPEMKTNFGIFVLHDKQK 161 (221)
T ss_dssp EEESSSHHHHHHHHHHHHHHHHHHHHTTCCTTTCGGGSCEEEEEEEEEECS
T ss_pred ccCCcHHHHHHHHHHHHhhcchhhhhcCccccccccCcceEEEEEEEeccc
Confidence 999999999999999997 7863 36899999998654
No 156
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=98.41 E-value=4.4e-07 Score=95.95 Aligned_cols=42 Identities=26% Similarity=0.338 Sum_probs=34.3
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEecCCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD---QRVVLVNQDSFY 70 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~---~~~~~is~D~~~ 70 (473)
..++.+|+|+|.+||||||+|+.|++.++. ..+.+++.|.+.
T Consensus 393 gq~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir 437 (573)
T 1m8p_A 393 ATQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVR 437 (573)
T ss_dssp TTCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHH
T ss_pred cccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHH
Confidence 345789999999999999999999999863 447788877643
No 157
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=98.41 E-value=2.3e-07 Score=88.45 Aligned_cols=36 Identities=22% Similarity=0.253 Sum_probs=28.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is 65 (473)
+.+++++|+|.|++||||||+++.|++.++ ++.+++
T Consensus 20 ~~~~~~~I~ieG~~GsGKST~~~~L~~~l~--~~~~i~ 55 (263)
T 1p5z_B 20 EGTRIKKISIEGNIAAGKSTFVNILKQLCE--DWEVVP 55 (263)
T ss_dssp ---CCEEEEEECSTTSSHHHHHTTTGGGCT--TEEEEC
T ss_pred cccCceEEEEECCCCCCHHHHHHHHHHhcC--CCEEEe
Confidence 446789999999999999999999999985 266664
No 158
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=98.41 E-value=2.9e-09 Score=98.10 Aligned_cols=28 Identities=21% Similarity=0.379 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRV 61 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~ 61 (473)
+|+|.|++||||||+++.|++.++..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~ 29 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGR 29 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCC
Confidence 7999999999999999999999864333
No 159
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=98.40 E-value=5.5e-07 Score=95.52 Aligned_cols=37 Identities=22% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D 67 (473)
++.+|.|+|.+||||||+|+.|++.+...++.++.+|
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lD 87 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLD 87 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEES
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 6789999999999999999999999832234444443
No 160
>3lrt_A Ribose-phosphate pyrophosphokinase; phosphoribosyl transferase, ATP analog binding, ATP-binding, metal-binding, nucleotide biosynthesis; HET: ADP; 1.53A {Thermoplasma volcanium} PDB: 3lpn_A* 3nag_A* 3mbi_A*
Probab=98.38 E-value=2.7e-06 Score=81.64 Aligned_cols=97 Identities=19% Similarity=0.157 Sum_probs=72.5
Q ss_pred ceeeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 311 RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 311 ~~~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
++.++|++..+|..+...+.+.+. ++...+.=+|. .+. ......+..+++|++|+|+|+|++||+|+..+++.|+++
T Consensus 153 ~~~vVV~pd~Gg~~~A~~lA~~L~-~p~~~i~K~r~-~~g-~v~i~~~~~dv~gk~vliVDDii~TG~Tl~~a~~~L~~~ 229 (286)
T 3lrt_A 153 DVDYVVSPDDGGLARVADISAKLG-KKHFFIEKKRI-DDR-TVEMKVPNVDVNGKKLLIVDDIISTGGTIAKSSGLLREK 229 (286)
T ss_dssp CCSEEEESSSSSHHHHHHHHHHHT-CEEEEEEEEEE-TTE-EEEEEESCCCCTTCEEEEEEEEESSCHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCccHHHHHHHHHhC-CCeEEEeeeec-CCC-cEEEeeccccCCcCEEEEEeccccccHHHHHHHHHHHhC
Confidence 345788888899998888877763 44444433342 122 222233455789999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEe--CHHHHHHH
Q 035513 391 GVPESNIIFLNLIA--APQGIHAI 412 (473)
Q Consensus 391 g~~~~~i~~~~~~~--~~~g~~~~ 412 (473)
|+ +.|.+++... +..|.+++
T Consensus 230 Ga--~~v~~~~th~v~s~~a~~~l 251 (286)
T 3lrt_A 230 GA--SKIYVSAVHGLFVNGSENKI 251 (286)
T ss_dssp TC--SEEEEEEEEECCCTTHHHHH
T ss_pred CC--CEEEEEEEEeecCchHHHHH
Confidence 98 6788888654 78899999
No 161
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=98.37 E-value=6.5e-07 Score=80.64 Aligned_cols=37 Identities=19% Similarity=0.354 Sum_probs=30.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.+|+|.|++||||||+++.|++.++ +..+++.|++.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~~~~--g~~~i~~d~~~ 38 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAAQLD--NSAYIEGDIIN 38 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHSS--SEEEEEHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhcccC--CeEEEcccchh
Confidence 36899999999999999999998664 45788887765
No 162
>1y0b_A Xanthine phosphoribosyltransferase; purine metabolism, STRU genomics, PSI, protein structure initative, midwest center structural genomics; HET: G4P; 1.80A {Bacillus subtilis} SCOP: c.61.1.1 PDB: 2fxv_A*
Probab=98.36 E-value=2.5e-06 Score=77.69 Aligned_cols=96 Identities=21% Similarity=0.154 Sum_probs=66.6
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCC----c--------------eEEeecCCCCCCCcEEEEEccccc
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNSG----R--------------QLIYQKLPADISSRHVLLLDPILA 375 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~----~--------------~~~~~~lP~~~~~~~v~l~dp~~a 375 (473)
++||+.+.|..+...+.+.+. .+ .+. .|...+. + ......-+...+|++|+|+|++++
T Consensus 56 ~Iv~v~~rG~~~a~~la~~l~-~p--~~~-~rk~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gk~VllVDDvit 131 (197)
T 1y0b_A 56 KIVTIESSGIAPAVMTGLKLG-VP--VVF-ARKHKSLTLTDNLLTASVYSFTKQTESQIAVSGTHLSDQDHVLIIDDFLA 131 (197)
T ss_dssp EEEEETTTTHHHHHHHHHHHT-CC--EEE-EBSSCCSSCCSSEEEEEEEETTTTEEEEEEEEGGGCCTTCEEEEEEEEES
T ss_pred EEEEEcccCHHHHHHHHHHhC-CC--EEE-EEecCCCCCCCceEEEeeeccccCceEEEEEeccccCCcCEEEEEEcccc
Confidence 566777899988888877653 22 222 2322211 1 011111122357999999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEEEEEeCH--HHHHHHHHh
Q 035513 376 SGNSAVKAISLILSKGVPESNIIFLNLIAAP--QGIHAICKR 415 (473)
Q Consensus 376 TG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~--~g~~~~~~~ 415 (473)
||+|+.++++.|++.|+ +.|.+++++..+ .|.+++.+.
T Consensus 132 TG~Tl~~a~~~L~~~Ga--~~V~~~~l~~~~~~~~~~~l~~~ 171 (197)
T 1y0b_A 132 NGQAAHGLVSIVKQAGA--SIAGIGIVIEKSFQPGRDELVKL 171 (197)
T ss_dssp SCHHHHHHHHHHHHTTC--EEEEEEEEEEETTSTHHHHHHHT
T ss_pred cCHHHHHHHHHHHHCCC--EEEEEEEEEEecccchhhhHHhc
Confidence 99999999999999998 678888888765 688888763
No 163
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=98.36 E-value=1.8e-07 Score=89.38 Aligned_cols=58 Identities=10% Similarity=0.193 Sum_probs=48.4
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
.+|+++|+++ +...|+++ +++.+++.+++|.|++||||||+.+.|+..+.. .|-..++
T Consensus 10 ~~l~~~~l~~~~~~~~vL~~v-----sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~ 71 (266)
T 4g1u_C 10 ALLEASHLHYHVQQQALINDV-----SLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLL 71 (266)
T ss_dssp CEEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEET
T ss_pred ceEEEEeEEEEeCCeeEEEee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC
Confidence 4799999977 56689999 999999999999999999999999999987643 3444443
No 164
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=98.35 E-value=3.8e-07 Score=85.54 Aligned_cols=49 Identities=20% Similarity=0.295 Sum_probs=43.1
Q ss_pred ceeeccccc--c-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ + ...|+++ |+....+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~i-----sl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNV-----NLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEEEEEeCCCCcceeeEEee-----eEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 489999976 2 2479999 99999999999999999999999999998764
No 165
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=98.34 E-value=2.9e-07 Score=87.55 Aligned_cols=51 Identities=20% Similarity=0.265 Sum_probs=45.4
Q ss_pred ccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+++|+++ +...|+++ ++..+.+.+++|.|++||||||+.+.|+..+.
T Consensus 5 ~~~l~i~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 5 MEILRTENIVKYFGEFKALDGV-----SISVNKGDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp CEEEEEEEEEEEETTEEEEEEE-----CCEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEeeeEEEECCEeeEeee-----EEEEeCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 35799999976 45689999 99999999999999999999999999998765
No 166
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.33 E-value=7.9e-07 Score=84.30 Aligned_cols=44 Identities=30% Similarity=0.542 Sum_probs=36.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS 72 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~ 72 (473)
...++.+|+|+|+|||||||+++.|++.++ .++.+++.|.+.+.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~-~~~~~~~~D~~r~~ 71 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ-GNIVIIDGDSFRSQ 71 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT-TCCEEECGGGGGTT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC-CCcEEEecHHHHHh
Confidence 455678999999999999999999999986 24678888877543
No 167
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=98.33 E-value=4.4e-07 Score=84.10 Aligned_cols=40 Identities=13% Similarity=0.176 Sum_probs=25.5
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..+|+++ ++..+++.+++|.|++||||||+++.|+..++
T Consensus 9 ~~~~l~~i-----sl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~p 48 (218)
T 1z6g_A 9 HHSSGLVP-----RGSMNNIYPLVICGPSGVGKGTLIKKLLNEFP 48 (218)
T ss_dssp ------------------CCCCEEEECSTTSSHHHHHHHHHHHST
T ss_pred ccccccCC-----ceecCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45588999 99999999999999999999999999999773
No 168
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.32 E-value=3.4e-07 Score=88.54 Aligned_cols=44 Identities=23% Similarity=0.455 Sum_probs=35.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS 72 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~ 72 (473)
...++.+|.|+|+|||||||+++.|++.++ .++.+||.|.+...
T Consensus 29 ~~~~~~livl~G~sGsGKSTla~~L~~~~~-~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 29 AVESPTAFLLGGQPGSGKTSLRSAIFEETQ-GNVIVIDNDTFKQQ 72 (287)
T ss_dssp CCSSCEEEEEECCTTSCTHHHHHHHHHHTT-TCCEEECTHHHHTT
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCeEEEechHhHHh
Confidence 344578999999999999999999999884 24788998877543
No 169
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=98.31 E-value=9e-07 Score=80.41 Aligned_cols=32 Identities=13% Similarity=0.233 Sum_probs=25.9
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++...++.+|+|+||||||||||++.|.+.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 44555678899999999999999999998865
No 170
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=98.31 E-value=5.6e-07 Score=89.43 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=44.9
Q ss_pred Cccceeeccccc---ccc--cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDL--SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~--~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ +.. .|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 M~-~l~i~~l~~~y~~~~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 56 (353)
T 1oxx_K 1 MV-RIIVKNVSKVFKKGKVVALDNV-----NINIENGERFGILGPSGAGKTTFMRIIAGLDV 56 (353)
T ss_dssp CC-CEEEEEEEEEEGGGTEEEEEEE-----EEEECTTCEEEEECSCHHHHHHHHHHHHTSSC
T ss_pred Cc-EEEEEeEEEEECCEeeeeEece-----EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 53 799999977 345 89999 99999999999999999999999999998664
No 171
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=98.31 E-value=7e-07 Score=85.35 Aligned_cols=49 Identities=22% Similarity=0.315 Sum_probs=43.3
Q ss_pred ceeeccccc--c------cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D------DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~------~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ + ...|+++ ++....+.+++|.|++|||||||.+.|+..+.
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~v-----sl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENV-----SLVINEGECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEEEEEEEecCCCccccceeeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 689999966 3 2479999 99999999999999999999999999988764
No 172
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=98.29 E-value=4e-07 Score=87.32 Aligned_cols=51 Identities=22% Similarity=0.229 Sum_probs=44.9
Q ss_pred ccceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 2 ETVIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 2 ~~~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+|+++|+++ + ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~v-----sl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGL-----TFTLYPGKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CceEEEEEEEEEeCCCCCceeeEee-----EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 35799999976 2 4589999 99999999999999999999999999998765
No 173
>1zn8_A APRT, adenine phosphoribosyltransferase; glycosyltransferase, purine salvage; HET: AMP; 1.76A {Homo sapiens} SCOP: c.61.1.1 PDB: 1ore_A* 1zn7_A* 1zn9_A*
Probab=98.29 E-value=2.9e-06 Score=76.02 Aligned_cols=94 Identities=16% Similarity=0.161 Sum_probs=65.0
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCC--------------ceEEeecCCCCCCCcEEEEEcccccccHH
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNSG--------------RQLIYQKLPADISSRHVLLLDPILASGNS 379 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~--------------~~~~~~~lP~~~~~~~v~l~dp~~aTG~t 379 (473)
++|++.+.|..+...+.+.+. .+. +.+ |...+. ...+...-+..++|++|+|+|++++||+|
T Consensus 60 ~vv~v~~~G~~~a~~la~~l~-~p~--~~~-r~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gk~VllVDDvitTG~T 135 (180)
T 1zn8_A 60 YIAGLDSRGFLFGPSLAQELG-LGC--VLI-RKRGKLPGPTLWASYSLEYGKAELEIQKDALEPGQRVVVVDDLLATGGT 135 (180)
T ss_dssp EEEEETTTHHHHHHHHHHHHT-CEE--EEE-EETTCCCSSEEEEEEEETTEEEEEEEETTSSCTTCEEEEEEEEESSSHH
T ss_pred EEEEECCCchHHHHHHHHHhC-CCE--EEE-EecCCCCcccccHHHHHhcCccEEEEeccccCCCCEEEEEcCCcccHHH
Confidence 466667788888777776653 232 223 322221 11122222334689999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEEeCH--HHHHHHH
Q 035513 380 AVKAISLILSKGVPESNIIFLNLIAAP--QGIHAIC 413 (473)
Q Consensus 380 ~~~~~~~L~~~g~~~~~i~~~~~~~~~--~g~~~~~ 413 (473)
+.++++.|++.|+ +.|.+++++..+ .|.+++.
T Consensus 136 l~~~~~~L~~~Ga--~~v~~~~l~~~~~~~~~~~l~ 169 (180)
T 1zn8_A 136 MNAACELLGRLQA--EVLECVSLVELTSLKGREKLA 169 (180)
T ss_dssp HHHHHHHHHHTTC--EEEEEEEEEEEGGGCHHHHHT
T ss_pred HHHHHHHHHHcCC--EEEEEEEEEEccCcchhhhhc
Confidence 9999999999998 678888888776 4677764
No 174
>2dy0_A APRT, adenine phosphoribosyltransferase; structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.25A {Escherichia coli K12}
Probab=98.28 E-value=2.5e-06 Score=77.24 Aligned_cols=59 Identities=22% Similarity=0.198 Sum_probs=48.2
Q ss_pred CCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCH--HHHHHHHHhCCCcEEEE
Q 035513 361 DISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAP--QGIHAICKRFPKIKIVT 423 (473)
Q Consensus 361 ~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~--~g~~~~~~~~p~v~i~~ 423 (473)
..+|++|+|+|++++||+|+.++++.|++.|+ +.|.+++++..+ .|.+++.+. ++.+++
T Consensus 123 ~~~gk~VLlVDDvitTG~Tl~~a~~~L~~~Ga--~~V~~~~l~~~~~~~~~~~l~~~--g~~v~s 183 (190)
T 2dy0_A 123 IKPGDKVLVVDDLLATGGTIEATVKLIRRLGG--EVADAAFIINLFDLGGEQRLEKQ--GITSYS 183 (190)
T ss_dssp CCTTCEEEEEEEEESSCHHHHHHHHHHHHTTC--EEEEEEEEEEEGGGCHHHHHHTT--TCEEEE
T ss_pred cCCcCEEEEEEccccchHHHHHHHHHHHHcCC--EEEEEEEEEEccCcchHHHHhhC--CCcEEE
Confidence 35799999999999999999999999999998 678888887776 377877542 455544
No 175
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=98.23 E-value=8.1e-07 Score=82.02 Aligned_cols=50 Identities=28% Similarity=0.345 Sum_probs=44.0
Q ss_pred cceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 9 ~~l~~~~ls~~y~~~il~~v-----sl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 9 SKLEIRDLSVGYDKPVLERI-----TMTIEKGNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEEEEEEEESSSEEEEEE-----EEEEETTCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEEEEEEeCCeEEeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4799999976 22789999 99999999999999999999999999988764
No 176
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=98.23 E-value=7.4e-07 Score=89.15 Aligned_cols=51 Identities=22% Similarity=0.270 Sum_probs=45.1
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ +...|+++ ++..+.+.+++|.|++||||||+.+.|+..+.
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (372)
T 1g29_1 1 MA-GVRLVDVWKVFGEVTAVREM-----SLEVKDGEFMILLGPSGCGKTTTLRMIAGLEE 54 (372)
T ss_dssp CE-EEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CC-EEEEEeEEEEECCEEEEeee-----EEEEcCCCEEEEECCCCcHHHHHHHHHHcCCC
Confidence 53 799999977 34589999 99999999999999999999999999998764
No 177
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=98.22 E-value=7.6e-07 Score=88.37 Aligned_cols=50 Identities=24% Similarity=0.313 Sum_probs=44.0
Q ss_pred cceeecccccc----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFAD----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++. ...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 13 ~~l~~~~l~~~y~g~~~vl~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 13 MTIEFVGVEKIYPGGARSVRGV-----SFQIREGEMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp EEEEEEEEEECCTTSTTCEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred ceEEEEEEEEEEcCCCEEEeee-----EEEECCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 57999999762 3589999 99999999999999999999999999998764
No 178
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=98.21 E-value=6.9e-07 Score=88.51 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=42.9
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +. .|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 1 ml~~~~l~~~y~~~-~l~~v-----sl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 1 MIEIESLSRKWKNF-SLDNL-----SLKVESGEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp CEEEEEEEEECSSC-EEEEE-----EEEECTTCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CEEEEEEEEEECCE-EEeee-----EEEEcCCCEEEEECCCCccHHHHHHHHHcCCC
Confidence 489999977 34 89999 99999999999999999999999999998764
No 179
>2p1z_A Phosphoribosyltransferase; STRU genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.44A {Corynebacterium diphtheriae}
Probab=98.20 E-value=3.2e-06 Score=75.84 Aligned_cols=103 Identities=13% Similarity=0.195 Sum_probs=67.8
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++.+.|.++...+.+.+. .++..+.+ |...+ +... ... ...++|++|+|+|++++||+|+.++++.|++.|
T Consensus 66 ~vv~v~~gG~~~a~~la~~l~-~~~~~~~~-rk~~~~~g~~~-~~~-g~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~G 141 (180)
T 2p1z_A 66 AVGGLTLGADPVATSVMHADG-REIHAFVV-RKEAKKHGMQR-RIE-GPDVVGKKVLVVEDTTTTGNSPLTAVKALREAG 141 (180)
T ss_dssp EEEEETTTHHHHHHHHHHSSS-SCCEEEEE-CSCCC-CC-CC-SEE-SSCCTTCEEEEEEEECSSSHHHHHHHHHHHHHT
T ss_pred EEEEecCCCHHHHHHHHHHHC-CCCCeEEE-Eeccccccchh-hcc-CCCCCcCEEEEEEeccCCcHHHHHHHHHHHHcC
Confidence 577888889999988888663 22333333 43321 1110 011 123679999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCHHHHHHHHHhCCCcEEEE
Q 035513 392 VPESNIIFLNLIAAPQGIHAICKRFPKIKIVT 423 (473)
Q Consensus 392 ~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i~~ 423 (473)
+ +.|.+++++..++|-.+..+++ ++.+++
T Consensus 142 a--~~v~~~~l~~~~~~g~~~l~~~-g~~~~s 170 (180)
T 2p1z_A 142 A--EVVGVATVVDRATGAADVIAAE-GLEYRY 170 (180)
T ss_dssp C--EEEEEEEEEC-CCCHHHHHHTT-TCCEEE
T ss_pred C--eEEEEEEEEEcCcchHHHHHhc-CCeEEE
Confidence 8 6788888877665543333332 455544
No 180
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=98.19 E-value=4.6e-07 Score=88.25 Aligned_cols=49 Identities=16% Similarity=0.271 Sum_probs=43.8
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ ....|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 53 ~i~~~~vs~~y~~~~~vL~~i-----sl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 53 RIEFENVHFSYADGRETLQDV-----SFTVMPGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp CEEEEEEEEESSTTCEEEEEE-----EEEECTTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred eEEEEEEEEEcCCCCceeeee-----eEEEcCCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 589999966 35689999 99999999999999999999999999998765
No 181
>1l1q_A Adenine phosphoribosyltransferase; aprtase, giardia lamblia, purine metabolism, cataly transferase; HET: 9DA; 1.85A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1l1r_A*
Probab=98.19 E-value=7.6e-06 Score=73.73 Aligned_cols=97 Identities=20% Similarity=0.187 Sum_probs=66.9
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--------------Cc-eEEeecCCCCCCCcEEEEEcccccccH
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--------------GR-QLIYQKLPADISSRHVLLLDPILASGN 378 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--------------~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~ 378 (473)
++|+|.+.|..+...+.+.+. .+. +.+.+ ..+ .. ..+...-+..++|++|+|+|++++||+
T Consensus 56 ~Iv~vp~rG~~~A~~la~~l~-~p~--~~~rk-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~gk~VLLVDDVitTG~ 131 (186)
T 1l1q_A 56 KVVGIESRGFILGGIVANSLG-VGF--VALRK-AGKLPGDVCKCTFDMEYQKGVTIEVQKRQLGPHDVVLLHDDVLATGG 131 (186)
T ss_dssp EEEEESGGGHHHHHHHHHHHT-CEE--EEEEE-TTSSCSSEEEEEEEETTEEEEEEEEEGGGCCTTCCEEEEEEEESSSH
T ss_pred EEEEcCcccHHHHHHHHHHhC-CCE--EEEEe-cCCCCCceechhhhhhcCcceEEEEecccCCCcCEEEEEecccccHH
Confidence 566777889988888877653 222 22222 111 00 122222122357999999999999999
Q ss_pred HHHHHHHHHHhcCCCCC--cEEEEEEEeCHH--HHHHHHHhCC
Q 035513 379 SAVKAISLILSKGVPES--NIIFLNLIAAPQ--GIHAICKRFP 417 (473)
Q Consensus 379 t~~~~~~~L~~~g~~~~--~i~~~~~~~~~~--g~~~~~~~~p 417 (473)
|+.++++.|++.|+ + .|.+++++..++ |-+++. .|+
T Consensus 132 Tl~aa~~~L~~~Ga--~~~~V~~~~l~~k~~~~g~~~l~-~~~ 171 (186)
T 1l1q_A 132 TLLAAIELCETAGV--KPENIYINVLYEIEALKGREKVG-QKC 171 (186)
T ss_dssp HHHHHHHHHHHTTC--CGGGEEEEEEEECGGGCHHHHHT-TTC
T ss_pred HHHHHHHHHHHcCC--CcceEEEEEEEEccCccHHHHHh-hcC
Confidence 99999999999998 6 799999988874 666664 454
No 182
>2yzk_A OPRT, oprtase, orotate phosphoribosyltransferase; rossmann fold, glycosyltransferase, magnesium, pyrimidine biosynthesis, structural genomics; 1.80A {Aeropyrum pernix}
Probab=98.19 E-value=5.3e-06 Score=74.23 Aligned_cols=101 Identities=17% Similarity=0.203 Sum_probs=69.2
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhc
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSK 390 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~ 390 (473)
.++|++.+.|.++...+.+.+. .+. .+.|...+ .... .+..+++|++|+|+|++++||+|+.++++.|++.
T Consensus 60 ~~iv~v~~~G~~~a~~la~~l~-~p~---~~~r~~~~~~g~~~---~i~~~~~gk~VllVDDvitTG~Tl~~~~~~L~~~ 132 (178)
T 2yzk_A 60 SAVIGVATGGLPWAAMLALRLS-KPL---GYVRPERKGHGTLS---QVEGDPPKGRVVVVDDVATTGTSIAKSIEVLRSN 132 (178)
T ss_dssp SEEEEETTTTHHHHHHHHHHHT-CCE---EEECCCCTTSCCCC---CCBTCCCSSEEEEEEEEESSSHHHHHHHHHHHHT
T ss_pred CEEEEecccchHHHHHHHHHHC-CCE---EEEEccccccCccc---eecccCCCCEEEEEEeccCCcHHHHHHHHHHHHc
Confidence 3567778899998888877653 232 23443321 1110 1224678999999999999999999999999999
Q ss_pred CCCCCcEEEEEEEeCH-HHHHHHHHhCCCcEEEEE
Q 035513 391 GVPESNIIFLNLIAAP-QGIHAICKRFPKIKIVTS 424 (473)
Q Consensus 391 g~~~~~i~~~~~~~~~-~g~~~~~~~~p~v~i~~~ 424 (473)
|+ +.+.+++++..+ .|.+++.+. ++.+++-
T Consensus 133 Ga--~~v~~~~l~~r~~~~~~~l~~~--g~~~~sl 163 (178)
T 2yzk_A 133 GY--TVGTALVLVDRGEGAGELLARM--GVRLVSV 163 (178)
T ss_dssp TC--EEEEEEEEEECCSSHHHHHHTT--TCEEEEE
T ss_pred CC--eEEEEEEEEEcCcCHHHHHHHc--CCcEEEE
Confidence 98 677777877754 456666432 4565553
No 183
>3dez_A OPRT, oprtase, orotate phosphoribosyltransferase; glycosyltransferase, MAGN pyrimidine biosynthesis; 2.40A {Streptococcus mutans}
Probab=98.18 E-value=1.1e-05 Score=75.54 Aligned_cols=101 Identities=11% Similarity=0.161 Sum_probs=68.3
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCCc-eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~~-~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~ 392 (473)
++|++..+|.++...+.+.+. .+ .+. -|.+.+.. ...... ...++|++|+|+|++++||+|+.++++.|++.|+
T Consensus 103 vIvg~~~gGi~~A~~lA~~L~-~p--~~~-vrk~~k~~G~~~~ie-g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~Ga 177 (243)
T 3dez_A 103 VIAGTATAGIPHGAIIADKMN-LP--LAY-IRSKPKDHGAGNQIE-GRVTKGQKMVIIEDLISTGGSVLDAVAAAQREGA 177 (243)
T ss_dssp EEEEETTTTHHHHHHHHHHTT-CC--EEE-ECSSCC-----CCEE-SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTTC
T ss_pred EEEEecCchHHHHHHHHHHcC-CC--EEE-EEEeeccCCceeEEE-eccCCCCEEEEEEeeccccHHHHHHHHHHHHCCC
Confidence 466677788888888777653 22 333 34332211 000011 1246799999999999999999999999999998
Q ss_pred CCCcEEEEEEEeC--HHHHHHHHHhCCCcEEEE
Q 035513 393 PESNIIFLNLIAA--PQGIHAICKRFPKIKIVT 423 (473)
Q Consensus 393 ~~~~i~~~~~~~~--~~g~~~~~~~~p~v~i~~ 423 (473)
+.+.+++++.. +.|.+++.+. ++++++
T Consensus 178 --~vv~v~~l~d~~~~~a~e~l~~~--gi~~~s 206 (243)
T 3dez_A 178 --DVLGVVAIFTYELPKATANFEKA--SVKLVT 206 (243)
T ss_dssp --EEEEEEEEEECCCHHHHHHHHHH--TCCEEE
T ss_pred --EEEEEEEEEECCCchHHHHHHhc--CCCEEE
Confidence 66777777775 6788888765 454443
No 184
>1qb7_A APRT, adenine phosphoribosyltransferase; dinucleotide binding fold; HET: ADE CIT; 1.50A {Leishmania donovani} SCOP: c.61.1.1 PDB: 1qb8_A* 1qcc_A* 1qcd_A 1mzv_A*
Probab=98.16 E-value=8.8e-06 Score=76.18 Aligned_cols=112 Identities=16% Similarity=0.300 Sum_probs=73.4
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCCC------------------ceEEeecCCCCCCCcEEEEEccccc
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNSG------------------RQLIYQKLPADISSRHVLLLDPILA 375 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~~------------------~~~~~~~lP~~~~~~~v~l~dp~~a 375 (473)
++|++.+.|.++...+.+.+. .+ .+.+ |...+. ......+-....+|++|+|+|++++
T Consensus 74 ~Ivgv~~gG~~~a~~lA~~L~-~p--~~~~-rk~~k~~~~~~~s~~~~~~~~~~~~~~~~i~~~~~~~Gk~VLIVDDvit 149 (236)
T 1qb7_A 74 HILGFDARGFLFGPMIAVELE-IP--FVLM-RKADKNAGLLIRSEPYEKEYKEAAPEVMTIRYGSIGKGSRVVLIDDVLA 149 (236)
T ss_dssp EEEEETTGGGGTHHHHHHHHT-CC--EEEE-BCGGGCCSSEEECCCCCCCTTSCCCCCCEEETTSSCTTCEEEEEEEEES
T ss_pred EEEEECcCcHHHHHHHHHHhC-CC--EEEE-EEecCCCCcceeceeccchhhhcCcceEEEecCCCCCcCEEEEEecccc
Confidence 456677788888877776653 22 2323 322111 0011111122347899999999999
Q ss_pred ccHHHHHHHHHHHhcCCCCCcEEEEEEEeCH--HHHHHHHH----hCCCcEEEEEeecCCCC
Q 035513 376 SGNSAVKAISLILSKGVPESNIIFLNLIAAP--QGIHAICK----RFPKIKIVTSEIDSSID 431 (473)
Q Consensus 376 TG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~--~g~~~~~~----~~p~v~i~~~~id~~l~ 431 (473)
||+|+.++++.|++.|+ +.|.+++++... .|.+++.+ .+.++.+++-..-..++
T Consensus 150 TG~Tl~~a~~~L~~~Ga--~~v~v~~l~~~~~~~g~~~l~~~~~~~~~g~~v~sl~~~~~~~ 209 (236)
T 1qb7_A 150 TGGTALSGLQLVEASDA--VVVEMVSILSIPFLKAAEKIHSTANSRYKDIKFISLLSDDALT 209 (236)
T ss_dssp SCHHHHHHHHHHHHTTC--EEEEEEEEEECGGGCHHHHHHHHHHHTTTTCCEEEEEEGGGCC
T ss_pred cHHHHHHHHHHHHHcCC--eEEEEEEEEEcccccHHHHHhhhcccccCCCcEEEEEEccccc
Confidence 99999999999999998 678888888776 47888875 34556666544333343
No 185
>1g2q_A Adenine phosphoribosyltransferase 1; dimer, single domain, catalytic loop; 1.50A {Saccharomyces cerevisiae} SCOP: c.61.1.1 PDB: 1g2p_A
Probab=98.15 E-value=8.5e-06 Score=73.46 Aligned_cols=95 Identities=17% Similarity=0.196 Sum_probs=65.5
Q ss_pred eeEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC-------------CceEEeecCCCCCCCcEEEEEcccccccHH
Q 035513 313 LCGISIIRSGESMENALRACCKGIKIGKILIHREGNS-------------GRQLIYQKLPADISSRHVLLLDPILASGNS 379 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~-------------~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t 379 (473)
-++|++.+.|..+...+.+.+. .+. +.+.+...+ ....+...-+..++|++|+|+|++++||+|
T Consensus 61 d~Iv~v~~~G~~~a~~la~~l~-~p~--~~~rk~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~gk~VLlVDDvitTG~T 137 (187)
T 1g2q_A 61 DYIVGLESRGFLFGPTLALALG-VGF--VPVRKAGKLPGECFKATYEKEYGSDLFEIQKNAIPAGSNVIIVDDIIATGGS 137 (187)
T ss_dssp CEEEEETTTHHHHHHHHHHHHT-CEE--EEEEETTCSCSSEEEEEEECSSCEEEEEEETTSSCTTCEEEEEEEEESSCHH
T ss_pred CEEEEEccCcHHHHHHHHHHHC-CCE--EEEEEeCCCCcceecHHHHHHhCCCcEEEecccCCCcCEEEEECCCcccHHH
Confidence 3677888889888888877653 232 223332211 111222222345789999999999999999
Q ss_pred HHHHHHHHHhcCCCCCcEEEEEEEeCHH--HHHHH
Q 035513 380 AVKAISLILSKGVPESNIIFLNLIAAPQ--GIHAI 412 (473)
Q Consensus 380 ~~~~~~~L~~~g~~~~~i~~~~~~~~~~--g~~~~ 412 (473)
+.++++.|++.|+ +.|.+++++..++ |-+++
T Consensus 138 l~~~~~~L~~~Ga--~~v~~~~l~~~~~~~g~~~l 170 (187)
T 1g2q_A 138 AAAAGELVEQLEA--NLLEYNFVMELDFLKGRSKL 170 (187)
T ss_dssp HHHHHHHHHHTTC--EEEEEEEEEECCCSSCCCCC
T ss_pred HHHHHHHHHHcCC--eEEEEEEEEEccCcCchhhc
Confidence 9999999999998 6888888887763 54443
No 186
>3m3h_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, structural genomics, infectious diseases; 1.75A {Bacillus anthracis} PDB: 3osc_A*
Probab=98.14 E-value=9.8e-06 Score=75.48 Aligned_cols=101 Identities=9% Similarity=0.166 Sum_probs=64.0
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++..+|.++...+.+.+. .+ .+.+ |.+.+ +...... ...++|++|+|+|++++||+|+.++++.|++.|
T Consensus 91 ~Ivg~~~gGi~~a~~lA~~L~-~p--~~~v-rk~~k~~G~~~~i~--g~~~~Gk~VLIVDDvitTG~Tl~~a~~~L~~~G 164 (234)
T 3m3h_A 91 VIAGTATAGIAHAAWVSDRMD-LP--MCYV-RSKAKGHGKGNQIE--GKAEKGQKVVVVEDLISTGGSAITCVEALREAG 164 (234)
T ss_dssp EEEEC---CHHHHHHHHHHHT-CC--EEEE-C---------CCEE--SCCCTTCEEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred EEEEeccchHHHHHHHHHHcC-CC--EEEE-EEeeccCCcceEEe--cccCCCCEEEEEecccchhHHHHHHHHHHHHCC
Confidence 455666788888777766542 23 2323 32221 1110001 124679999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeC--HHHHHHHHHhCCCcEEEEE
Q 035513 392 VPESNIIFLNLIAA--PQGIHAICKRFPKIKIVTS 424 (473)
Q Consensus 392 ~~~~~i~~~~~~~~--~~g~~~~~~~~p~v~i~~~ 424 (473)
+ +.+.+++++.. +.|.+++.+. ++++++.
T Consensus 165 a--~vv~v~~l~~~~~~~~~e~l~~~--gi~v~sL 195 (234)
T 3m3h_A 165 C--EVLGIVSIFTYELEAGKEKLEAA--NVASYSL 195 (234)
T ss_dssp C--EEEEEEEEEECCCHHHHHHHHHT--TCCEEES
T ss_pred C--EEEEEEEEEECcCchHHHHHHhc--CCCEEEE
Confidence 8 67778888775 6677777654 5665553
No 187
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=98.14 E-value=1.6e-06 Score=91.05 Aligned_cols=41 Identities=27% Similarity=0.444 Sum_probs=33.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCC---EEEEecCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQR---VVLVNQDSF 69 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~---~~~is~D~~ 69 (473)
..++.+|+|+|++||||||+++.|+..++..+ +.+++.|++
T Consensus 366 ~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 366 ERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred cccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 34678999999999999999999999986322 566777655
No 188
>1dqn_A Guanine phosphoribosyltransferase; protein-inhibitor complex, Mg IONS, pyrophosphate, transition state analogue; HET: IMU; 1.75A {Giardia intestinalis} SCOP: c.61.1.1 PDB: 1dqp_A*
Probab=98.13 E-value=1.5e-06 Score=80.78 Aligned_cols=132 Identities=11% Similarity=0.060 Sum_probs=91.3
Q ss_pred CchhhHHHHHHHHHHHHHHHHCCCCCeeeeecCCCCceeeeeEecceeeEEEeeccCchhHHHHHhhcC-CceeeEEEEE
Q 035513 266 TTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCK-GIKIGKILIH 344 (473)
Q Consensus 266 ~~~~fr~~~~~l~~~l~~ea~~~l~~~~~~v~tp~~~~~~g~~~~~~~~~v~ilraG~~~~~~~~~~~p-~a~~g~i~~~ 344 (473)
+..++...+.+|+..+.+.. +.. .+++++|.++|+|..+...+.+.+. ...++++.++
T Consensus 37 s~~~I~~~i~~LA~~I~~~~-~~~--------------------~~~~vvVgi~~Gg~~~a~~La~~L~~p~~v~~i~vs 95 (230)
T 1dqn_A 37 TFEECKALAADTARRMNEYY-KDV--------------------AEPVTLVALLTGAYLYASLLTVHLTFPYTLHFVKVS 95 (230)
T ss_dssp CHHHHHHHHHHHHHHHHHHH-TTC--------------------SSCEEEEEETTTHHHHHHHHHTTCCSCEEEEEECCE
T ss_pred CHHHHHHHHHHHHHHHHHHh-cCC--------------------CCCcEEEEECCCCHHHHHHHHHHhCCCceEEEEEEE
Confidence 34467778888877766431 110 1467899999999999999999886 3355666655
Q ss_pred EcCCCC-ceEE--eecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHHHHHHHHhCCCcEE
Q 035513 345 REGNSG-RQLI--YQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKI 421 (473)
Q Consensus 345 r~~~~~-~~~~--~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g~~~~~~~~p~v~i 421 (473)
+-..+. .... ...++.+++|++|+|+|++++||.|+.++++.|++ |.+++++..+..+.+-..-.||.+-
T Consensus 96 ~y~~~~s~~v~i~~~~l~~~v~Gk~VLIVDDIidTG~Tl~~a~~~L~~-------V~vavLl~k~~~~~r~~~i~~D~~~ 168 (230)
T 1dqn_A 96 SYKGTRQESVVFDEEDLKQLKEKREVVLIDEYVDSGHTIFSIQEQIKH-------AKICSCFVKDVDAIKKHSALADTKM 168 (230)
T ss_dssp EEECSSCEEEECCHHHHHHHHHCSSEEEEEEEESSSHHHHHHHHHSTT-------CEEEEEEESCHHHHHTSTTTTTCCE
T ss_pred EeCCCccCceEEEeccCccCCCCCEEEEEeeEcChHHHHHHHHHHhhc-------CEEEEEEECCccccccCCcCCCCce
Confidence 432111 1122 13445678999999999999999999999999987 7888899888743443334466555
Q ss_pred EEEe
Q 035513 422 VTSE 425 (473)
Q Consensus 422 ~~~~ 425 (473)
|+|.
T Consensus 169 yvg~ 172 (230)
T 1dqn_A 169 FYGY 172 (230)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 189
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=98.13 E-value=5.1e-06 Score=76.93 Aligned_cols=175 Identities=14% Similarity=0.076 Sum_probs=83.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEE-EEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHHHHhhc
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV-LVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKH 106 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~-~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~ 106 (473)
.++++.+++|.||||||||||.+.|+..++...+. .++... +.... .......|.|..+. .+..... .
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~tt--r~~~~-~e~~gi~y~fq~~~-----~f~~~~~---~ 80 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTT--RQPRP-GEVHGEHYFFVNHD-----EFKEMIS---R 80 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEEC--SCCCT-TCCBTTTBEECCHH-----HHHHHHH---T
T ss_pred cCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecC--CCCCc-ccccCceEEECCHH-----HHHHHHh---c
Confidence 45667899999999999999999999887520111 111110 11100 00111234444332 2222111 1
Q ss_pred CCceecccccccccc-cc-ccccccCCCcEEEEecccccCCh----hhhhcc--CeEEEEec-ChhHHHHHhhhcccccc
Q 035513 107 GQAVSIPDYDFKSHK-RK-QQSRLINPSDVFILEGILVLHDP----RVRDLM--SMKIFVDT-DSDVRLSRRIQRDTVER 177 (473)
Q Consensus 107 g~~i~~p~~~~~~~~-~~-~~~~~~~~~~viIlEG~~~l~~~----~~~~~~--Dl~I~L~~-~~e~~~~R~~~R~~~~~ 177 (473)
+.....-.+....+. .. .....+..++++++| .++ .+.+.+ ...|++.. +.+...+|+..|.
T Consensus 81 ~~f~E~~~~~~~~yg~~~~~v~~~l~~G~illLD-----LD~~~~~~i~~~l~~~~tI~i~th~~~~l~~Rl~~rG---- 151 (219)
T 1s96_A 81 DAFLEHAEVFGNYYGTSREAIEQVLATGVDVFLD-----IDWQGAQQIRQKMPHARSIFILPPSKIELDRRLRGRG---- 151 (219)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHTTTCEEEEE-----CCHHHHHHHHHHCTTCEEEEEECSSHHHHHHHHHTTS----
T ss_pred CHHHHHHHHHhccCCCCHHHHHHHHhcCCeEEEE-----ECHHHHHHHHHHccCCEEEEEECCCHHHHHHHHHHcC----
Confidence 111111111000000 00 011123456899999 233 222222 25666655 5677777776663
Q ss_pred CCChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheee
Q 035513 178 GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229 (473)
Q Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~ 229 (473)
..+.+.+..++..... .. .+....|++|.|+ +.+.+++++.+.|.
T Consensus 152 ~~~~e~i~~rl~~a~~-e~-----~~~~~~d~~i~Nd-~l~~a~~~l~~ii~ 196 (219)
T 1s96_A 152 QDSEEVIAKRMAQAVA-EM-----SHYAEYDYLIVND-DFDTALTDLKTIIR 196 (219)
T ss_dssp CSCHHHHHHHHHHHHH-HH-----TTGGGSSEEEECS-SHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHH-HH-----hhccCCCEEEECc-CHHHHHHHHHHHHH
Confidence 1345555555443211 11 1235678888886 66677777766664
No 190
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=98.13 E-value=7.9e-07 Score=89.41 Aligned_cols=59 Identities=19% Similarity=0.281 Sum_probs=47.4
Q ss_pred cceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 3 TVIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 3 ~~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
..|+++|+++ ....|+++ ++..+++.+++|.|++||||||+.+.|+..+...|-..++.
T Consensus 18 ~~i~~~~l~~~y~~~~~~~L~~v-----sl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~~~G~I~i~G 81 (390)
T 3gd7_A 18 GQMTVKDLTAKYTEGGNAILENI-----SFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTEGEIQIDG 81 (390)
T ss_dssp CCEEEEEEEEESSSSSCCSEEEE-----EEEECTTCEEEEEESTTSSHHHHHHHHHTCSEEEEEEEESS
T ss_pred CeEEEEEEEEEecCCCeEEeece-----eEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCeEEEECC
Confidence 4689999976 24589999 99999999999999999999999999997654223344433
No 191
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=98.11 E-value=1.2e-06 Score=82.69 Aligned_cols=49 Identities=27% Similarity=0.306 Sum_probs=42.8
Q ss_pred ceeecccccc-----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFAD-----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~~-----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++. ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNI-----NLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred ceeEEEEEEEeCCCCcceeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 5889999652 3589999 99999999999999999999999999998765
No 192
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=98.10 E-value=7e-06 Score=74.67 Aligned_cols=27 Identities=19% Similarity=0.349 Sum_probs=23.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++.+++|.|||||||||+.+.|...+.
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999998764
No 193
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=98.09 E-value=6.8e-07 Score=84.54 Aligned_cols=51 Identities=18% Similarity=0.231 Sum_probs=46.0
Q ss_pred CccceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++. ..|+++ ++...++.+++|.|++|||||||.+.|+..+.
T Consensus 1 M~~~l~~~~l~~~-~vl~~v-----sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 1 MSIVMQLQDVAES-TRLGPL-----SGEVRAGEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp -CEEEEEEEEEET-TTEEEE-----EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCcEEEEEceEEE-EEEeee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 7778999999887 789999 99999999999999999999999999998764
No 194
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=98.07 E-value=8.7e-07 Score=82.76 Aligned_cols=52 Identities=25% Similarity=0.369 Sum_probs=46.3
Q ss_pred Cccceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+.+|+++|+++ . ...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 3 ~~~~l~~~~l~~~y~~~~~~il~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 3 TTTEVVMENVTAFWEEGGTPVLKDI-----NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CCEEEEEEEEEECSSTTSCCSEEEE-----EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ccceEEEEEEEEEeCCCCceeeeee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 777999999976 2 4589999 99999999999999999999999999998765
No 195
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=98.06 E-value=1.5e-06 Score=82.82 Aligned_cols=47 Identities=26% Similarity=0.272 Sum_probs=41.8
Q ss_pred ceeeccccc---c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 4 VIELADDFA---D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 4 ~i~~~~~~~---~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+|+++|+++ . ...|+++ ++..+ +.+++|.|++|||||||.+.|+..+
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~v-----sl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENI-----NLEVN-GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEE-----EEEEC-SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEEEEEeCCCCccceeEEee-----eEEEC-CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999976 3 4689999 99999 9999999999999999999999876
No 196
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=98.05 E-value=2e-06 Score=80.69 Aligned_cols=33 Identities=27% Similarity=0.306 Sum_probs=28.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
++|+|+|++||||||+++.|++.++ +.+++..+
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g---~~~~~~~~ 34 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYS---AVKYQLAG 34 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSC---EEECCTTH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcC---CeEEecCh
Confidence 6899999999999999999998876 77766543
No 197
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=98.03 E-value=1.2e-06 Score=82.98 Aligned_cols=49 Identities=20% Similarity=0.340 Sum_probs=43.4
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
|. +|+++|+++ +...|+++ ++..+++.+++|.|++|||||||.+.|+..
T Consensus 1 M~-~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 1 MS-QLEIRDLWASIDGETILKGV-----NLVVPKGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp -C-EEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred Cc-eEEEEeEEEEECCEEEEece-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 54 799999976 45689999 999999999999999999999999999985
No 198
>2wns_A Orotate phosphoribosyltransferase; alternative splicing, multifunctional enzyme, lyase, polymorphism, decarboxylase, phosphoprotein; HET: OMP; 1.90A {Homo sapiens}
Probab=98.02 E-value=1.2e-05 Score=73.51 Aligned_cols=101 Identities=11% Similarity=0.250 Sum_probs=67.0
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++-.+|.++...+.+.+. .+. +. .|.+.. +...... ....+|++|+|+|++++||+|+.++++.|++.|
T Consensus 65 ~Iv~v~~~g~~~a~~la~~l~-~p~--~~-~rk~~k~~g~~~~~~--g~~~~gk~VliVDDvitTG~Tl~~a~~~L~~~G 138 (205)
T 2wns_A 65 TVCGVPYTALPLATVICSTNQ-IPM--LI-RRKETKDYGTKRLVE--GTINPGETCLIIEDVVTSGSSVLETVEVLQKEG 138 (205)
T ss_dssp EEEECTTTTHHHHHHHHHHHT-CCE--EE-ECCTTTTSSSCCSEE--SCCCTTCBEEEEEEEESSSHHHHHHHHHHHHTT
T ss_pred EEEEcCCchHHHHHHHHHHHC-cCE--EE-EecCcCccCcccccc--CCCCCCCEEEEEEEeccccHHHHHHHHHHHHCC
Confidence 566777778888888877653 332 22 343221 1111111 112378999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCH-HHHHHHHHhCCCcEEEEE
Q 035513 392 VPESNIIFLNLIAAP-QGIHAICKRFPKIKIVTS 424 (473)
Q Consensus 392 ~~~~~i~~~~~~~~~-~g~~~~~~~~p~v~i~~~ 424 (473)
+ +.|.+++++... .|.+++.+. ++.+++-
T Consensus 139 a--~~v~~~~l~~~~~~~~~~l~~~--g~~v~sl 168 (205)
T 2wns_A 139 L--KVTDAIVLLDREQGGKDKLQAH--GIRLHSV 168 (205)
T ss_dssp C--BCCEEEEEEECCSSHHHHHHTT--TCEEEEE
T ss_pred C--EEEEEEEEEEcCcchHHHHHHc--CCeEEEE
Confidence 8 678888888876 445565432 4555553
No 199
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=97.99 E-value=1.5e-06 Score=82.76 Aligned_cols=50 Identities=20% Similarity=0.243 Sum_probs=44.9
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 5 ~~l~i~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 5 NKLHVIDLHKRYGGHEVLKGV-----SLQARAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CCEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEeeEEEEECCEEEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3899999977 35689999 99999999999999999999999999998765
No 200
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=97.99 E-value=4.3e-06 Score=88.88 Aligned_cols=50 Identities=18% Similarity=0.281 Sum_probs=44.2
Q ss_pred cceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ + ...|+++ +...+++.+++|.|++||||||+.+.|+..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i-----~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 394 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHV-----SFSIPQGKTVALVGRSGSGKSTIANLFTRFYD 394 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccc-----eEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999966 2 4589999 99999999999999999999999999998765
No 201
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=97.98 E-value=1.8e-06 Score=81.05 Aligned_cols=51 Identities=16% Similarity=0.317 Sum_probs=44.2
Q ss_pred Cccceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 1 METVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 1 m~~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|. +|+++|+++ + ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 1 M~-~l~~~~l~~~y~~~~~~vl~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 56 (237)
T 2cbz_A 1 MN-SITVRNATFTWARSDPPTLNGI-----TFSIPEGALVAVVGQVGCGKSSLLSALLAEMD 56 (237)
T ss_dssp -C-CEEEEEEEEESCTTSCCSEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHTTCSE
T ss_pred CC-eEEEEEEEEEeCCCCCceeeee-----EEEECCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 54 799999976 3 4589999 99999999999999999999999999987664
No 202
>2ps1_A Orotate phosphoribosyltransferase 1; alpha beta, oprtase-OA-PRPP complex; HET: ORO PRP; 1.75A {Saccharomyces cerevisiae} PDB: 2pry_A* 2prz_A*
Probab=97.97 E-value=1.7e-05 Score=73.68 Aligned_cols=88 Identities=10% Similarity=0.123 Sum_probs=59.3
Q ss_pred EEEeeccCchhHHHHHhhc--------CCceeeEEEEEEcCCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHH
Q 035513 315 GISIIRSGESMENALRACC--------KGIKIGKILIHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISL 386 (473)
Q Consensus 315 ~v~ilraG~~~~~~~~~~~--------p~a~~g~i~~~r~~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~ 386 (473)
++.+...|.++...+.+.+ .+.++..+--.|.. .+...... ...++|++|+|+|++++||+|+.++++.
T Consensus 71 Vvg~~~~G~~~a~~lA~~L~~~~~~~~~~~p~~~~rk~~k~-~g~~~~~~--~~~i~Gk~VlIVDDvitTG~Tl~~a~~~ 147 (226)
T 2ps1_A 71 IFGPAYKGIPLAAIVCVKLAEIGGSKFQNIQYAFNRKEAKD-HGEGGIIV--GSALENKRILIIDDVMTAGTAINEAFEI 147 (226)
T ss_dssp EEECTTTHHHHHHHHHHHHHHHSTTTTTTCEEEEEEEEEES-STTCEEEE--ESCCTTCEEEEEEEEESSSHHHHHHHHH
T ss_pred EEEeccCCHHHHHHHHHHHHhhhccccCCCCEEEEechhhh-cCCCceEe--cCCCCcCEEEEEEecccChHHHHHHHHH
Confidence 3455566888777776665 24453333222211 22212222 2457899999999999999999999999
Q ss_pred HHhcCCCCCcEEEEEEEeCHH
Q 035513 387 ILSKGVPESNIIFLNLIAAPQ 407 (473)
Q Consensus 387 L~~~g~~~~~i~~~~~~~~~~ 407 (473)
|++.|+ +.+.+++++..++
T Consensus 148 L~~~Ga--~~v~v~~l~dr~~ 166 (226)
T 2ps1_A 148 ISNAKG--QVVGSIIALDRQE 166 (226)
T ss_dssp HHHTTC--EEEEEEEEEECCB
T ss_pred HHHcCC--eEEEEEEEEEccC
Confidence 999998 6787888876663
No 203
>1vch_A Phosphoribosyltransferase-related protein; structural genomics, riken structural genomics/proteomics initiative, RSGI; 1.94A {Thermus thermophilus} SCOP: c.61.1.1
Probab=97.97 E-value=7.8e-06 Score=72.83 Aligned_cols=88 Identities=14% Similarity=0.223 Sum_probs=61.4
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCC---CCc-------------eEEeecCCCC----CCCcEEEEEccc
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGN---SGR-------------QLIYQKLPAD----ISSRHVLLLDPI 373 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~---~~~-------------~~~~~~lP~~----~~~~~v~l~dp~ 373 (473)
++|++.+.|.++...+.+.+. .+. +.+.+... +.. ..++ +..+ ++|++|+|+|++
T Consensus 55 ~Iv~v~~gg~~~a~~la~~l~-~p~--~~~rk~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~~~~v~gk~VllVDDv 129 (175)
T 1vch_A 55 ILFTTETSPIPLTHVLAEALG-LPY--VVARRRRRPYMEDPIIQEVQTLTLGVGEVLW--LDRRFAEKLLNQRVVLVSDV 129 (175)
T ss_dssp EEEEESSTHHHHHHHHHHHHT-CCE--EEEBSSCCTTCCSCEEEECCC------CEEE--ECHHHHHHHTTCEEEEEEEE
T ss_pred EEEEeCCcChHHHHHHHHHhC-CCE--EEEEecCCCCCCcceeeeeeccccCCceEEE--EecccccccCCCEEEEEecc
Confidence 567778899999888877653 232 22222111 111 1122 2222 489999999999
Q ss_pred ccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 374 LASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 374 ~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
++||+|+.++++.|++.|+ +.|.+++++..+.+
T Consensus 130 itTG~Tl~~~~~~L~~~Ga--~~V~~~~l~~~~~~ 162 (175)
T 1vch_A 130 VASGETMRAMEKMVLRAGG--HVVARLAVFRQGTP 162 (175)
T ss_dssp ESSSHHHHHHHHHHHHTTC--EEEEEEEEEECSCC
T ss_pred ccchHHHHHHHHHHHHcCC--eEEEEEEEEecCCC
Confidence 9999999999999999998 78888888876654
No 204
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=97.95 E-value=2.4e-06 Score=81.71 Aligned_cols=48 Identities=21% Similarity=0.328 Sum_probs=43.1
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++|||||||.+.|+..
T Consensus 19 ~~l~~~~l~~~y~~~~vl~~v-----sl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 19 HMLSIKDLHVSVEDKAILRGL-----SLDVHPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp -CEEEEEEEEEETTEEEEEEE-----EEEECTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred ceEEEEeEEEEECCEEEEEee-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 5799999976 45689999 999999999999999999999999999986
No 205
>1nul_A XPRT, xanthine-guanine phosphoribosyltransferase; purine salvage enzym; 1.80A {Escherichia coli} SCOP: c.61.1.1 PDB: 1a96_A* 1a95_A 1a98_A 1a97_A*
Probab=97.93 E-value=1e-05 Score=70.40 Aligned_cols=86 Identities=19% Similarity=0.219 Sum_probs=60.3
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEc--CCCCceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHRE--GNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~--~~~~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|.+.++|..+...+.+.+.--.+..+.+++- .+++. ....+-+ +++|++|+|+|++++||+|+.+|++.|++
T Consensus 31 ~vvgi~~Gg~~~a~~la~~l~~~~~~~i~~~~y~~~~~~~-~~~~~~~-~~~gk~VliVDDii~TG~Tl~~a~~~l~~-- 106 (152)
T 1nul_A 31 GIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRE-LKVLKRA-EGDGEGFIVIDDLVDTGGTAVAIREMYPK-- 106 (152)
T ss_dssp EEEEEETTTHHHHHHHHHHHTCCCEEEEEEEC---------CEEEECC-SSCCTTEEEEEEEECTTSSHHHHHHHCTT--
T ss_pred EEEEEcCCCHHHHHHHHHHcCCCcceEEEEEEecCcccce-EEEecCC-CCCcCEEEEEEeecCchHHHHHHHHHHhh--
Confidence 588999999999999988864223555544332 11222 1112223 47899999999999999999999999875
Q ss_pred CCCCcEEEEEEEeCHHH
Q 035513 392 VPESNIIFLNLIAAPQG 408 (473)
Q Consensus 392 ~~~~~i~~~~~~~~~~g 408 (473)
+.+++++--+.+
T Consensus 107 -----v~~a~L~~k~~~ 118 (152)
T 1nul_A 107 -----AHFVTIFAKPAG 118 (152)
T ss_dssp -----SEEEEEEECGGG
T ss_pred -----CCEEEEEECCCC
Confidence 677888877653
No 206
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=97.91 E-value=2.3e-06 Score=82.32 Aligned_cols=50 Identities=18% Similarity=0.081 Sum_probs=44.8
Q ss_pred cceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ +...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 20 ~~l~~~~l~~~y~~~~vL~~i-----sl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 20 MLIQLDQIGRMKQGKTILKKI-----SWQIAKGDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEeEEEEECCEEEEEee-----eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4799999976 45689999 99999999999999999999999999998765
No 207
>3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A
Probab=97.90 E-value=4.1e-06 Score=89.07 Aligned_cols=50 Identities=16% Similarity=0.214 Sum_probs=44.1
Q ss_pred cceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ + ...|+++ +...+++.+++|.|++||||||+.+.|+..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v-----~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 394 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNI-----NLKIPAGKTVALVGRSGSGKSTIASLITRFYD 394 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEE-----EEEECTTCEEEEEECTTSSHHHHHHHHTTTTC
T ss_pred CcEEEEEEEEEcCCCCCccccce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhhccC
Confidence 3689999966 2 4589999 99999999999999999999999999998765
No 208
>3mjd_A Orotate phosphoribosyltransferase; IDP02311, csgid, structural genomics, center for structural genomics of infectious diseases; 1.90A {Francisella tularensis}
Probab=97.88 E-value=1.4e-05 Score=74.32 Aligned_cols=85 Identities=14% Similarity=0.167 Sum_probs=58.9
Q ss_pred eEEEeeccCchhHHHHHhhc-----CCceeeEEEEEEcCCC----CceEEeecCCCCCCCcEEEEEcccccccHHHHHHH
Q 035513 314 CGISIIRSGESMENALRACC-----KGIKIGKILIHREGNS----GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAI 384 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~-----p~a~~g~i~~~r~~~~----~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~ 384 (473)
++|++..+|.++...+...+ -+.+ .+-+ |.+.+ ...+.- ..++|++|+|+|++++||+|+.+++
T Consensus 84 ~Ivg~~~gGi~~A~~lA~~L~~~~g~~~p--~~~~-RK~~k~~g~~~~i~g----~~~~Gk~VLIVDDVitTG~Tl~~a~ 156 (232)
T 3mjd_A 84 ILFGPAYKGIPLVAAISTVLALKYNIDMP--YAFD-RKEAKDHGEGGVFVG----ADMTNKKVLLIDDVMTAGTAFYESY 156 (232)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHHCCCCB--EEEE-CCC-------CCEEE----SCCTTCEEEEECSCCSSSHHHHHHH
T ss_pred EEEEecCCcHHHHHHHHHHHhhhcCCCCc--EEEE-EeecccCCCCceEec----cCCCCCEEEEEEeeccccHHHHHHH
Confidence 45666678888887777665 2344 3333 33221 111211 2568999999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEEEEeCHH
Q 035513 385 SLILSKGVPESNIIFLNLIAAPQ 407 (473)
Q Consensus 385 ~~L~~~g~~~~~i~~~~~~~~~~ 407 (473)
+.|++.|+ +-+.+++++.-.+
T Consensus 157 ~~L~~~Ga--~vv~v~vlvdr~e 177 (232)
T 3mjd_A 157 NKLKIINA--KIAGVVLSIDRQE 177 (232)
T ss_dssp HHHHTTTC--EEEEEEEEEECCB
T ss_pred HHHHHCCC--EEEEEEEEEECCc
Confidence 99999998 5677778887554
No 209
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=97.87 E-value=4.5e-06 Score=78.62 Aligned_cols=49 Identities=14% Similarity=0.238 Sum_probs=43.1
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ ....|+++ ++..+.+.+++|.|++|||||||.+.|+..+.
T Consensus 1 ml~~~~l~~~y~~~~~vl~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 53 (243)
T 1mv5_A 1 MLSARHVDFAYDDSEQILRDI-----SFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQ 53 (243)
T ss_dssp CEEEEEEEECSSSSSCSEEEE-----EEEECTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEEEEEeCCCCceEEEe-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 488999966 24589999 99999999999999999999999999998764
No 210
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=97.83 E-value=1.2e-05 Score=78.95 Aligned_cols=28 Identities=21% Similarity=0.154 Sum_probs=25.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
+++.|.|.|+.||||||+++.|++.++.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4689999999999999999999999874
No 211
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.83 E-value=1.6e-05 Score=77.56 Aligned_cols=36 Identities=33% Similarity=0.378 Sum_probs=33.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.+|+|+|++||||||+++.|++.++ ..+++.|++.
T Consensus 5 ~~~i~i~GptGsGKTtla~~La~~l~---~~iis~Ds~q 40 (323)
T 3crm_A 5 PPAIFLMGPTAAGKTDLAMALADALP---CELISVDSAL 40 (323)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSC---EEEEEECTTT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CcEEeccchh
Confidence 46899999999999999999999997 8999999864
No 212
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.83 E-value=2.2e-05 Score=75.91 Aligned_cols=42 Identities=36% Similarity=0.430 Sum_probs=36.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC--CCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS--FYHSLT 74 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~--~~~~~~ 74 (473)
+.+.+|+|+||+|||||||+..|++.++ ..+++.|+ +|+.++
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~qvY~~~~ 51 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILP---VELISVDSALIYKGMD 51 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSC---EEEEECCTTTTBTTCC
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCC---CcEEeccccccccccc
Confidence 3467899999999999999999999987 89999997 566554
No 213
>3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.81 E-value=5.6e-06 Score=88.31 Aligned_cols=49 Identities=27% Similarity=0.356 Sum_probs=43.5
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+++ +...|+++ +...+++.+++|.|++||||||+.+.|+..+.
T Consensus 354 ~i~~~~v~~~y~~~~~~l~~i-----sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 406 (598)
T 3qf4_B 354 EIEFKNVWFSYDKKKPVLKDI-----TFHIKPGQKVALVGPTGSGKTTIVNLLMRFYD 406 (598)
T ss_dssp CEEEEEEECCSSSSSCSCCSE-----EEECCTTCEEEEECCTTSSTTHHHHHHTTSSC
T ss_pred eEEEEEEEEECCCCCccccce-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCcC
Confidence 589999966 24589999 99999999999999999999999999998765
No 214
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.81 E-value=1.6e-05 Score=76.94 Aligned_cols=41 Identities=29% Similarity=0.451 Sum_probs=36.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC--CCCCCH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF--YHSLTD 75 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~--~~~~~~ 75 (473)
+.+|+|+||+||||||++..|++.++ ..+||.|++ |+.++-
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~---~~iis~Ds~QvYr~~~i 45 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLN---GEVISGDSMQVYRGMDI 45 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTT---EEEEECCGGGGBTTCCT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCc---cceeecCcccceeeeee
Confidence 56899999999999999999999987 899999986 776543
No 215
>3n2l_A OPRT, oprtase, orotate phosphoribosyltransferase; pyrimidine ribonucleotide biosynthesis, infectious diseases; 2.10A {Vibrio cholerae}
Probab=97.81 E-value=6.8e-05 Score=69.78 Aligned_cols=102 Identities=13% Similarity=0.227 Sum_probs=65.7
Q ss_pred eEEEeeccCchhHHHHHhhcC---CceeeEEEEEEcCCCC--c--eEEeecCCCCCCCcEEEEEcccccccHHHHHHHHH
Q 035513 314 CGISIIRSGESMENALRACCK---GIKIGKILIHREGNSG--R--QLIYQKLPADISSRHVLLLDPILASGNSAVKAISL 386 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p---~a~~g~i~~~r~~~~~--~--~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~ 386 (473)
++|.+-.+|.++...+...+- ...+..+-+ |.+... . .+. ...++| +|+|+|++++||+|+..+++.
T Consensus 91 ~Vvg~~~gGi~~A~~lA~~L~~~~g~~vp~~~~-RK~~k~~g~~~~i~----G~~~~G-~VliVDDvitTG~T~~~a~~~ 164 (238)
T 3n2l_A 91 VLFGPAYKGIPIATTTAVALADHHDVDTPYCFN-RKEAKNHGEGGNLV----GSKLEG-RVMLVDDVITAGTAIRESMEL 164 (238)
T ss_dssp EEEECTTTHHHHHHHHHHHHHHHSCCCCBEEEE-CCC--------CEE----ESCCCS-EEEEECSCCSSSHHHHHHHHH
T ss_pred EEEecccChHHHHHHHHHHHhHhhCCCccEEEE-eeccCCCCCCceEe----ccccCC-cEEEEeeeecccHHHHHHHHH
Confidence 345566678888777766541 122223333 433221 1 221 135679 999999999999999999999
Q ss_pred HHhcCCCCCcEEEEEEEeCHH-------HHHHHHHhCCCcEEEEE
Q 035513 387 ILSKGVPESNIIFLNLIAAPQ-------GIHAICKRFPKIKIVTS 424 (473)
Q Consensus 387 L~~~g~~~~~i~~~~~~~~~~-------g~~~~~~~~p~v~i~~~ 424 (473)
|++.|+ +-+.+++++.-.+ |++++.+++ ++++++.
T Consensus 165 l~~~Ga--~vv~v~vlvdr~egG~~~l~a~~~~~~~~-Gv~v~SL 206 (238)
T 3n2l_A 165 IQANKA--DLAGVLVAIDRQEKGKGELSAIQEVERDF-GCAVISI 206 (238)
T ss_dssp HHHTTC--EEEEEEEEEECCCBCSSSSBHHHHHHHHH-CCEEEEE
T ss_pred HHHcCC--EEEEEEEEEEcccCccchhhHHHHHHHHc-CCCEEEE
Confidence 999998 5566777777543 577774544 4666654
No 216
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=97.79 E-value=5.3e-06 Score=78.90 Aligned_cols=50 Identities=22% Similarity=0.238 Sum_probs=43.9
Q ss_pred cceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ + ...|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~v-----sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 71 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSI-----NFFIPSGTTCALVGHTGSGKSTIAKLLYRFYD 71 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEE-----EEEECTTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CeEEEEEEEEEeCCCCcCceeEee-----EEEECCCCEEEEECCCCCCHHHHHHHHhccCC
Confidence 4699999976 2 2489999 99999999999999999999999999998765
No 217
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=97.79 E-value=6.8e-06 Score=87.27 Aligned_cols=49 Identities=16% Similarity=0.216 Sum_probs=43.2
Q ss_pred ceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+++ ....|+++ |...+++.+++|.|++||||||+.+.|+..+.
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~i-----sl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~ 392 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDI-----NLSIEKGETVAFVGMSGGGKSTLINLIPRFYD 392 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEE-----EEEECTTCEEEEECSTTSSHHHHHTTTTTSSC
T ss_pred eEEEEEEEEEcCCCCCcceeee-----EEEECCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 589999966 23589999 99999999999999999999999999988765
No 218
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=97.74 E-value=7.6e-06 Score=76.86 Aligned_cols=47 Identities=11% Similarity=0.070 Sum_probs=41.4
Q ss_pred ceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++|+++ +. .|+++ ++..++ .+++|.|++||||||+.+.|+..+.
T Consensus 1 ml~~~~l~~~y~~-~l~~i-----sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 1 MFLKVRAEKRLGN-FRLNV-----DFEMGR-DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp CCEEEEEEEEETT-EEEEE-----EEEECS-SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CEEEEEEEEEeCC-EEeee-----EEEECC-EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 488999977 33 59999 999989 9999999999999999999998765
No 219
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=97.73 E-value=9.5e-06 Score=86.31 Aligned_cols=50 Identities=24% Similarity=0.301 Sum_probs=43.9
Q ss_pred cceeeccccc-----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA-----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~-----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ ....|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i-----sl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 340 GSVSFENVEFRYFENTDPVLSGV-----NFSVKPGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEE-----EEEECTTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CcEEEEEEEEEcCCCCCcceece-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 3589999965 24589999 99999999999999999999999999988765
No 220
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=97.71 E-value=7.8e-06 Score=85.52 Aligned_cols=43 Identities=26% Similarity=0.298 Sum_probs=33.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFY 70 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~ 70 (473)
....+.+|.++|.+||||||+|+.|++.++ .....+++.|++.
T Consensus 31 ~~~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r 75 (520)
T 2axn_A 31 LTNSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYR 75 (520)
T ss_dssp --CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHH
Confidence 345678999999999999999999999874 2346778888754
No 221
>2yl4_A ATP-binding cassette SUB-family B member 10, mitochondrial; membrane protein, mitochondrial transport; HET: ACP LMT CDL 14Y; 2.85A {Homo sapiens} PDB: 4aa3_A*
Probab=97.71 E-value=1.6e-05 Score=84.79 Aligned_cols=48 Identities=19% Similarity=0.252 Sum_probs=42.7
Q ss_pred eeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 5 IELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 5 i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
|+++|+++ + ...|+++ ++..+++.+++|.|++||||||+.+.|+..+.
T Consensus 342 i~~~~v~~~y~~~~~~~vl~~i-----sl~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~ 395 (595)
T 2yl4_A 342 LEFKNVHFAYPARPEVPIFQDF-----SLSIPSGSVTALVGPSGSGKSTVLSLLLRLYD 395 (595)
T ss_dssp EEEEEEEEECSSCTTSEEEEEE-----EEEECTTCEEEEECCTTSSSTHHHHHHTTSSC
T ss_pred EEEEEEEEEeCCCCCCccccce-----EEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 89999966 2 2489999 99999999999999999999999999998765
No 222
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.70 E-value=1.4e-05 Score=92.63 Aligned_cols=132 Identities=15% Similarity=0.237 Sum_probs=81.8
Q ss_pred ceeeccccc------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q 035513 4 VIELADDFA------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ------------------ 59 (473)
Q Consensus 4 ~i~~~~~~~------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~------------------ 59 (473)
-|+++|++. +.+.|+++ |+..+++..++|.|++||||||+++.|...+...
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~i-----sl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~ 489 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGM-----NLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEF 489 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEE-----EEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHH
T ss_pred cEEEEEeeeeCCCCCCCceeece-----EEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccHHH
Confidence 589999955 34689999 9999999999999999999999999999877531
Q ss_pred ---CEEEEecCCCCCCCCHHHHhhccCccCCCCccccHHHHHHHH---------HHhhcCCceec----ccccccccccc
Q 035513 60 ---RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDM---------EKLKHGQAVSI----PDYDFKSHKRK 123 (473)
Q Consensus 60 ---~~~~is~D~~~~~~~~~~~~~~~~~~f~~~~~~d~~~l~~~l---------~~l~~g~~i~~----p~~~~~~~~~~ 123 (473)
.+.++++|.+...-+-.+ + ..|+.++ .+.+.+.+.+ ..+-+|-...+ -..+...++|+
T Consensus 490 lr~~i~~v~Q~~~Lf~~TI~e--N---I~~g~~~-~~~~~v~~a~~~a~l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRi 563 (1321)
T 4f4c_A 490 LRKNVAVVSQEPALFNCTIEE--N---ISLGKEG-ITREEMVAACKMANAEKFIKTLPNGYNTLVGDRGTQLSGGQKQRI 563 (1321)
T ss_dssp HHHHEEEECSSCCCCSEEHHH--H---HHTTCTT-CCHHHHHHHHHHTTCHHHHHHSTTTTSSEESSSSCCCCHHHHHHH
T ss_pred HhhcccccCCcceeeCCchhH--H---Hhhhccc-chHHHHHHHHHHccchhHHHcCCCCCccEecCCCCCCCHHHHHHH
Confidence 145555555553322222 1 1233332 2333333333 33333322111 12344444555
Q ss_pred ccccc-cCCCcEEEEecccccCCh
Q 035513 124 QQSRL-INPSDVFILEGILVLHDP 146 (473)
Q Consensus 124 ~~~~~-~~~~~viIlEG~~~l~~~ 146 (473)
..++. ..+++++++|.+....++
T Consensus 564 aiARAl~~~~~IliLDE~tSaLD~ 587 (1321)
T 4f4c_A 564 AIARALVRNPKILLLDEATSALDA 587 (1321)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCT
T ss_pred HHHHHHccCCCEEEEecccccCCH
Confidence 54444 568999999988776665
No 223
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=97.69 E-value=1.3e-05 Score=92.84 Aligned_cols=49 Identities=12% Similarity=0.150 Sum_probs=43.4
Q ss_pred ceeeccccc------ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA------DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~------~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|++. +..+|+++ |+..+.+..|+|+|++||||||+++.|.+.+.
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~i-----sl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~ 1130 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGL-----SFSVEPGQTLALVGPSGCGKSTVVALLERFYD 1130 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEE-----EEEECTTCEEEEECSTTSSTTSHHHHHTTSSC
T ss_pred eEEEEEEEEeCCCCCCCccccce-----eEEECCCCEEEEECCCCChHHHHHHHHhcCcc
Confidence 589999955 22589999 99999999999999999999999999988765
No 224
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=97.68 E-value=9.1e-06 Score=78.49 Aligned_cols=50 Identities=22% Similarity=0.335 Sum_probs=36.3
Q ss_pred cceeeccccc-ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA-DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..|+++|+++ ....|+++ ++..+++.+++|.|++|||||||.+.|+..+.
T Consensus 39 ~~l~~~~l~~~~~~vl~~i-----sl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 89 (290)
T 2bbs_A 39 DSLSFSNFSLLGTPVLKDI-----NFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89 (290)
T ss_dssp -----------CCCSEEEE-----EEEECTTCEEEEEESTTSSHHHHHHHHTTSSC
T ss_pred ceEEEEEEEEcCceEEEee-----EEEEcCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4688999977 55689999 99999999999999999999999999987764
No 225
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.67 E-value=4.1e-05 Score=76.67 Aligned_cols=41 Identities=27% Similarity=0.395 Sum_probs=36.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC--CCCCCCH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS--FYHSLTD 75 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~--~~~~~~~ 75 (473)
+.+|+|+||+|||||||+..|++.++ ..+|+.|+ +|+.++.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~---~~iis~Ds~QvYr~l~i 44 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFN---GEVINSDSMQVYKDIPI 44 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHT---EEEEECCTTTTBSSCTT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCC---CeEeecCccceeccccc
Confidence 35899999999999999999999998 78999998 7877653
No 226
>1lh0_A OMP synthase; loop closure, monomer closure, orotate phosphoribosyltransferase; HET: ORO PRP; 2.00A {Salmonella typhimurium} SCOP: c.61.1.1 PDB: 1opr_A* 1sto_A* 1oro_A
Probab=97.64 E-value=6.9e-05 Score=68.91 Aligned_cols=85 Identities=12% Similarity=0.205 Sum_probs=59.3
Q ss_pred eEEEeeccCchhHHHHHhhc----C-CceeeEEEEEEcCCCC----ceEEeecCCCCCCCcEEEEEcccccccHHHHHHH
Q 035513 314 CGISIIRSGESMENALRACC----K-GIKIGKILIHREGNSG----RQLIYQKLPADISSRHVLLLDPILASGNSAVKAI 384 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~----p-~a~~g~i~~~r~~~~~----~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~ 384 (473)
++|++...|.++...+.+.+ . +.+ .+ +.|.+.+. ..+.- ..++| +|+|+|++++||+|+.+++
T Consensus 66 ~Ivgv~~~G~~~a~~lA~~L~~~~~~~~~--~~-~~rk~~~~~~~~~~~~g----~~~~g-~VliVDDvitTG~Tl~~a~ 137 (213)
T 1lh0_A 66 LLFGPAYKGIPIATTTAVALAEHHDKDLP--YC-FNRKEAKDHGEGGSLVG----SALQG-RVMLVDDVITAGTAIRESM 137 (213)
T ss_dssp EEECCTTTHHHHHHHHHHHHHHHHCCCCB--EE-EECSSCCSSTTCSSEEE----SCCCS-EEEEECSCCSSSCHHHHHH
T ss_pred EEEEcCCCcHHHHHHHHHHHHHhhCCCCC--EE-EEEeccCccCCCCceeC----CCCCC-CEEEEEecccchHHHHHHH
Confidence 46666677888877777666 2 333 33 33433221 12211 24679 9999999999999999999
Q ss_pred HHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 385 SLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 385 ~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
+.|++.|+ +.+.+++++.-++|
T Consensus 138 ~~l~~~Ga--~~v~v~~l~dr~~~ 159 (213)
T 1lh0_A 138 EIIQAHGA--TLAGVLISLDRQER 159 (213)
T ss_dssp HHHHHTTC--EEEEEEEEEECCBB
T ss_pred HHHHHCCC--eEEEEEEEEEcccC
Confidence 99999998 67888888876643
No 227
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=97.62 E-value=9.1e-06 Score=78.89 Aligned_cols=49 Identities=16% Similarity=0.129 Sum_probs=42.9
Q ss_pred ceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ ....|+++ +...+++.+++|.|++|||||||++.|+..+.
T Consensus 101 ~i~~~~vs~~y~~~vL~~v-----sl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 101 FFNYQNIELITFINALKLW-----LKGIPKKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp HHHHTTCCHHHHHHHHHHH-----HHTCTTCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred eEEEEEEEEEcChhhhccc-----eEEecCCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 478888866 34588999 89999999999999999999999999999883
No 228
>1o57_A PUR operon repressor; purine operon repressor, helix-turn-helix domain, phosphoribosyltranseferases, domain recombination, DNA binding; HET: EPE P6G 2PE PG4 1PE; 2.20A {Bacillus subtilis} SCOP: a.4.5.40 c.61.1.1 PDB: 1p4a_A*
Probab=97.60 E-value=9.5e-05 Score=71.24 Aligned_cols=46 Identities=17% Similarity=0.151 Sum_probs=40.9
Q ss_pred CCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEEEeCHHH
Q 035513 361 DISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQG 408 (473)
Q Consensus 361 ~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~~~~~~g 408 (473)
..+|++|+|+|++++||+|+..+++.|++.|+ +.+.+++++..+++
T Consensus 193 l~~Gk~VLIVDDViTTG~Tl~~a~~~L~~aGA--~vV~v~vlvdr~~~ 238 (291)
T 1o57_A 193 MKTGSNVLIIDDFMKAGGTINGMINLLDEFNA--NVAGIGVLVEAEGV 238 (291)
T ss_dssp SCTTCEEEEEEEEESSSHHHHHHHHHTGGGTC--EEEEEEEEEEESSC
T ss_pred CCCcCEEEEEEEEcCcHHHHHHHHHHHHHCCC--EEEEEEEEEEcCcc
Confidence 35799999999999999999999999999998 67778888877776
No 229
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=97.59 E-value=1.2e-05 Score=70.32 Aligned_cols=40 Identities=15% Similarity=0.275 Sum_probs=35.8
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+...++++ ++..+.+.+++|.|++||||||+.+.|+..++
T Consensus 19 ~~~~l~~v-----sl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l~ 58 (158)
T 1htw_A 19 KKFAEILL-----KLHTEKAIMVYLNGDLGAGKTTLTRGMLQGIG 58 (158)
T ss_dssp HHHHHHHH-----HHCCSSCEEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred HHHHHhcc-----ccccCCCCEEEEECCCCCCHHHHHHHHHHhCC
Confidence 35578888 88889999999999999999999999999874
No 230
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.55 E-value=0.00015 Score=74.92 Aligned_cols=29 Identities=31% Similarity=0.375 Sum_probs=24.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+++.+|.++|.+||||||+++.|++.++
T Consensus 36 ~~~~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 36 TNCPTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999998875
No 231
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=97.44 E-value=7e-05 Score=71.15 Aligned_cols=57 Identities=19% Similarity=0.167 Sum_probs=42.4
Q ss_pred ceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCC
Q 035513 4 VIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~ 68 (473)
+++++++... ..|+++ + ...+.+++|+|++||||||+.+.|+..+.. .+-..+..++
T Consensus 5 ~~~l~~l~~~-~vl~~i-----~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~ 63 (261)
T 2eyu_A 5 IPEFKKLGLP-DKVLEL-----C--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDP 63 (261)
T ss_dssp -CCGGGSSCC-THHHHG-----G--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESS
T ss_pred CCChHHCCCH-HHHHHH-----h--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCc
Confidence 5778888654 478888 5 567789999999999999999999987752 3444444443
No 232
>1ecf_A Glutamine phosphoribosylpyrophosphate amidotransf; purine biosynthesis, transferase, glycosyltransferase, gluta amidotransferase; HET: PIN; 2.00A {Escherichia coli} SCOP: c.61.1.1 d.153.1.1 PDB: 1ecb_A* 1ecc_A* 1ecg_A* 1ecj_A*
Probab=97.41 E-value=0.00018 Score=74.79 Aligned_cols=86 Identities=14% Similarity=0.142 Sum_probs=59.0
Q ss_pred eeEEEeeccCchhHHHHHhhc--CCceeeEEEEEEcC-CCC--c---------eEEeecCCCCCCCcEEEEEcccccccH
Q 035513 313 LCGISIIRSGESMENALRACC--KGIKIGKILIHREG-NSG--R---------QLIYQKLPADISSRHVLLLDPILASGN 378 (473)
Q Consensus 313 ~~~v~ilraG~~~~~~~~~~~--p~a~~g~i~~~r~~-~~~--~---------~~~~~~lP~~~~~~~v~l~dp~~aTG~ 378 (473)
-++|+|..+|..+..++.+.+ |-.. +.+- .|.. .+. + ...+..++.+++|++|+|+|++++||+
T Consensus 296 dvVv~vP~~g~~~A~~la~~lg~p~~~-~~~k-~r~~~~t~i~~~~~~R~~~v~~~~~~~~~~v~Gk~VllVDDii~TG~ 373 (504)
T 1ecf_A 296 DVVIPIPETSCDIALEIARILGKPYRQ-GFVK-NRYVGRTFIMPGQQLRRKSVRRKLNANRAEFRDKNVLLVDDSIVRGT 373 (504)
T ss_dssp CEEEECTTTTHHHHHHHHHHHTCCBCC-CEEE-CSCCCCCCCCSSSCCCCCCSTTTEEECGGGTTTCCEEEEESCCSSSH
T ss_pred eEEEEECCcHHHHHHHHHHHhCCCcee-eEEE-ecccCCceeCccHHHHHHHHHhhhccccccCCCCeEEEEeccccccH
Confidence 367788888888888887775 3221 2222 1211 110 0 011222356789999999999999999
Q ss_pred HHHHHHHHHHhcCCCCCcEEEEEE
Q 035513 379 SAVKAISLILSKGVPESNIIFLNL 402 (473)
Q Consensus 379 t~~~~~~~L~~~g~~~~~i~~~~~ 402 (473)
|+.++++.|++.|+ +.|.++++
T Consensus 374 Tl~~~~~~L~~~Ga--~~V~~~~l 395 (504)
T 1ecf_A 374 TSEQIIEMAREAGA--KKVYLASA 395 (504)
T ss_dssp HHHHHHHHHHHTTC--SSEEEEES
T ss_pred HHHHHHHHHHhcCC--cEEEEEEE
Confidence 99999999999998 67776665
No 233
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.34 E-value=0.00067 Score=69.70 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=29.2
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
++..+++.+|+|.|++||||||+++.|+..+.
T Consensus 287 sl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~ 318 (503)
T 2yhs_A 287 NVEGKAPFVILMVGVNGVGKTTTIGKLARQFE 318 (503)
T ss_dssp CCCSCTTEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred eeeccCCeEEEEECCCcccHHHHHHHHHHHhh
Confidence 67778899999999999999999999998774
No 234
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=97.34 E-value=0.00013 Score=76.62 Aligned_cols=49 Identities=20% Similarity=0.350 Sum_probs=39.0
Q ss_pred ceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++++|+++ +...+... +....++.+++|.|++||||||+++.|+..+.
T Consensus 269 ~l~~~~l~~~~~~~~l~~~-----~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~ 319 (538)
T 3ozx_A 269 KMKWTKIIKKLGDFQLVVD-----NGEAKEGEIIGILGPNGIGKTTFARILVGEIT 319 (538)
T ss_dssp EEEECCEEEEETTEEEEEC-----CEEEETTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEcceEEEECCEEEEec-----cceECCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 577778765 44556555 55667888999999999999999999998664
No 235
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=97.33 E-value=4e-05 Score=73.74 Aligned_cols=36 Identities=14% Similarity=0.185 Sum_probs=33.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
.+.+|++.|.-||||||..+.|.+.+++.++.++..
T Consensus 85 ~~vlIvfEG~DgAGKgt~Ik~L~e~Ldprg~~V~~~ 120 (304)
T 3czq_A 85 KRVMAVFEGRDAAGKGGAIHATTANMNPRSARVVAL 120 (304)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHTTSCTTTEEEEEC
T ss_pred CCeEEEEeCCCCCCHHHHHHHHHHHhcccCCeEEEe
Confidence 578999999999999999999999999888888765
No 236
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.33 E-value=0.0002 Score=66.82 Aligned_cols=61 Identities=16% Similarity=0.101 Sum_probs=40.7
Q ss_pred ceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHH--HH-hCCCCEEEEecCC
Q 035513 4 VIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMII--SR-LRDQRVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La--~~-l~~~~~~~is~D~ 68 (473)
+++++++..+...|..++ .-...++.+++|.|++||||||+++.|+ .. ....+..+++.+.
T Consensus 6 ~~~~~~i~tg~~~lD~~l----~Ggi~~G~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 6 YQPVRRVKSGIPGFDELI----EGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp --CCCEECCSCTTTGGGT----TTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred ccccceeecCCHhHHHHh----cCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 577777766555565552 1134567899999999999999999998 33 2334566665543
No 237
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.30 E-value=7.8e-05 Score=86.17 Aligned_cols=49 Identities=14% Similarity=0.214 Sum_probs=43.2
Q ss_pred ceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
-|+++|+++ . ...|+++ ++..+++.+++|.|++||||||+.+.|...+.
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~i-----sl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~ 441 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGL-----NLKVKSGQTVALVGNSGCGKSTTVQLMQRLYD 441 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEE-----EEEECTTCEEEEECCSSSSHHHHHHHTTTSSC
T ss_pred eEEEEEEEEEcCCCCCCcceecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 589999966 2 2589999 99999999999999999999999999988765
No 238
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=97.26 E-value=0.00019 Score=74.47 Aligned_cols=39 Identities=13% Similarity=0.233 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC----CCEEEEecCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD----QRVVLVNQDS 68 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~----~~~~~is~D~ 68 (473)
+++.+|+++|.|||||||+|+.|+++|+. ..+.+++.|+
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~~~g~r~~~~lDgD~ 435 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQFGGGRYYKIFEHNN 435 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTSCSCCCEEECCCTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHHhhcCcceEEecCCC
Confidence 45689999999999999999999999984 3367888776
No 239
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=97.26 E-value=0.00011 Score=72.51 Aligned_cols=59 Identities=19% Similarity=0.208 Sum_probs=46.1
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQD 67 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D 67 (473)
+|+++|+.+ ....++++ +....++.+++|.|++||||||+.+.|...+. .-.+.++..|
T Consensus 29 ~ie~~~~~~~~~~~~~l~~i-----~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d 92 (337)
T 2qm8_A 29 LAESRRADHRAAVRDLIDAV-----LPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVD 92 (337)
T ss_dssp HHTCSSHHHHHHHHHHHHHH-----GGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHeeCCcccccChHHHHHhC-----CcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEc
Confidence 678888865 34578888 88888899999999999999999999997663 1235555444
No 240
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.26 E-value=8.4e-05 Score=65.70 Aligned_cols=28 Identities=18% Similarity=0.297 Sum_probs=23.9
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMII 53 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La 53 (473)
++...++.+++|.|++||||||+++.+.
T Consensus 3 sl~i~~gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 3 KLTIPELSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp EEEEESSEEEEEECCTTSCHHHHHHHHS
T ss_pred cccCCCCEEEEEECCCCCCHHHHHHHHc
Confidence 4556678999999999999999999753
No 241
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=97.25 E-value=0.00014 Score=84.03 Aligned_cols=49 Identities=16% Similarity=0.236 Sum_probs=42.9
Q ss_pred ceeeccccc--c----cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA--D----DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~--~----~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+++ . ...|+++ ++..+++.+++|.|++||||||+++.|...+.
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~v-----sl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~ 1084 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGL-----SLEVKKGQTLALVGSSGCGKSTVVQLLERFYD 1084 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSC-----CEEECSSSEEEEECSSSTTHHHHHHHHTTSSC
T ss_pred cEEEEEEEEECCCCCCCeeecce-----eEEEcCCCEEEEECCCCCCHHHHHHHHhcCcC
Confidence 589999966 1 2479999 99999999999999999999999999998764
No 242
>1ao0_A Glutamine phosphoribosylpyrophosphate amidotransferase; glutamine amidotransferase, prtase, purine biosynthesis, phosphoribosyltransferase; HET: 5GP ADP; 2.80A {Bacillus subtilis} SCOP: c.61.1.1 d.153.1.1 PDB: 1gph_1*
Probab=97.21 E-value=0.00018 Score=74.05 Aligned_cols=42 Identities=10% Similarity=0.310 Sum_probs=36.5
Q ss_pred CCCCCCcEEEEEcccccccHHHHHHHHHHHhcCCCCCcEEEEEE
Q 035513 359 PADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNL 402 (473)
Q Consensus 359 P~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g~~~~~i~~~~~ 402 (473)
+.+++|++|+|+|++++||+|+.++++.|++.|+ +.|.++++
T Consensus 333 ~~~v~gk~VlLVDDvitTG~Tl~~a~~~L~~~Ga--~~V~~~~l 374 (459)
T 1ao0_A 333 RGVVEGKRVVMVDDSIVRGTTSRRIVTMLREAGA--TEVHVKIS 374 (459)
T ss_dssp HHHHTTCEEEEEESCCSSSHHHHHHHHHHHHTTC--SEEEEEES
T ss_pred cccCCCCeEEEEeeeecCHHHHHHHHHHHHHcCC--CEEEEEEe
Confidence 3468899999999999999999999999999998 56665553
No 243
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=97.18 E-value=0.00014 Score=65.96 Aligned_cols=46 Identities=15% Similarity=0.350 Sum_probs=27.6
Q ss_pred Cccceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 1 METVIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 1 m~~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
|. +|+++|+++ ....+++ +....+..|+|.|++|||||||.+.|..
T Consensus 1 m~-~l~~~~~~~~~~~~~l~~-------~~~~~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 1 MT-NLNYQQTHFVMSAPDIRH-------LPSDTGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp -----------CEEEESSGGG-------SSCSCSEEEEEEECTTSSHHHHHTTTCC
T ss_pred Cc-chhhhhhhheeecCCHhH-------CCCCCCcEEEEECCCCCCHHHHHHHHhC
Confidence 54 789999977 3334444 3566778999999999999999998863
No 244
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=97.15 E-value=0.00021 Score=65.06 Aligned_cols=30 Identities=30% Similarity=0.438 Sum_probs=25.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..++.+++|.|++||||||+++.|+..++
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 445678999999999999999999998875
No 245
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=97.08 E-value=0.00028 Score=73.89 Aligned_cols=62 Identities=15% Similarity=0.002 Sum_probs=45.8
Q ss_pred ccceeeccccc---ccccccccccCCCCC-CCCCCEEEEEEcCCCCcHHHHHHH--HHHHhC-CCCEEEEecCC
Q 035513 2 ETVIELADDFA---DDLSLQSASSESTTM-PTKQPFVIGVAGGTASGKTTVCNM--IISRLR-DQRVVLVNQDS 68 (473)
Q Consensus 2 ~~~i~~~~~~~---~~~~l~~~~~~~~~~-~~~~~~iI~I~G~sGSGKTTla~~--La~~l~-~~~~~~is~D~ 68 (473)
+.+++.+++.+ +...|+++ +. ...++.+++|.|++|||||||++. ++..+. ..+..+++..+
T Consensus 10 ~~~~~~~~~~~~~~g~~~Ld~i-----~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~ 78 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTMIEGFDDI-----SHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEE 78 (525)
T ss_dssp ----CCSSCCEECCCCTTHHHH-----TTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred CCCccccccccccCCchhHHHh-----cCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeC
Confidence 45677776644 56789999 88 888899999999999999999999 555554 45677776644
No 246
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.05 E-value=0.00024 Score=65.28 Aligned_cols=48 Identities=17% Similarity=0.112 Sum_probs=34.3
Q ss_pred eeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 5 IELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 5 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
++++++..+-..|..++ .-...++.+++|.|++||||||+++.|+..+
T Consensus 2 ~~~~~i~tG~~~LD~~l----~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 2 ATIGRISTGSKSLDKLL----GGGIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp CCCCEECCSCHHHHHHT----TSSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcCCccCCCChhHHhHh----cCCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566655544554442 1234567899999999999999999999754
No 247
>3qw4_B UMP synthase; N-terminal orotidine monophosphate decarboxylase domain C-TE orotate phosphoribosyltransferase domain, transferase, LYAS; HET: U5P; 3.00A {Leishmania donovani}
Probab=97.05 E-value=0.001 Score=67.89 Aligned_cols=100 Identities=15% Similarity=0.222 Sum_probs=63.7
Q ss_pred eEEEeeccCchhHHHHHhhcCCceeeEEEEEEcCCC--CceEEeecCCCCCCCcEEEEEcccccccHHHHHHHHHHHhcC
Q 035513 314 CGISIIRSGESMENALRACCKGIKIGKILIHREGNS--GRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391 (473)
Q Consensus 314 ~~v~ilraG~~~~~~~~~~~p~a~~g~i~~~r~~~~--~~~~~~~~lP~~~~~~~v~l~dp~~aTG~t~~~~~~~L~~~g 391 (473)
++|++..+|.++...+.+.+. .+ .+ +-|.+.+ +....... ...+|++|+|+|++++||+|+..+++.|++.|
T Consensus 319 ~Ivg~~~gGi~~A~~lA~~L~-~p--~~-~~rk~~k~~g~~~~i~g--~~~~G~~VliVDDvitTG~T~~~~~~~l~~~g 392 (453)
T 3qw4_B 319 RIAGLPYAALPIASAISNEMN-VP--LI-YPRREAKIYGTKAAIEG--EYKKGDRVVIIDDLVSTGETKVEAIEKLRSAG 392 (453)
T ss_dssp EEEECTTTTHHHHHHHHHHHC-CC--EE-EESSCC-------CEES--CCCTTCEEEEEEEEECC-CCHHHHHHHHHTTT
T ss_pred EEEeccCCcHHHHHHHHHHhC-CC--EE-EEEeeccccCcCceEec--ccCCCCEEEEEeeeechhHHHHHHHHHHHHcC
Confidence 456667788888877766652 22 33 3343221 11111111 12479999999999999999999999999999
Q ss_pred CCCCcEEEEEEEeCHHHH-HHHHHhCCCcEEEE
Q 035513 392 VPESNIIFLNLIAAPQGI-HAICKRFPKIKIVT 423 (473)
Q Consensus 392 ~~~~~i~~~~~~~~~~g~-~~~~~~~p~v~i~~ 423 (473)
+ +.+.+++++...+|- +++.+ + ++++++
T Consensus 393 ~--~vv~v~~lvdr~~~g~~~l~~-~-g~~v~s 421 (453)
T 3qw4_B 393 L--EVVSIVVLVDRDMGAKAFLNK-L-GYDFEA 421 (453)
T ss_dssp C--EEEEEEEEEECSSSHHHHHHH-T-TCCEEE
T ss_pred C--EEEEEEEEEECCcchHHHHHh-c-CCCEEE
Confidence 8 677888888776644 44443 3 455544
No 248
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=97.04 E-value=0.00055 Score=60.34 Aligned_cols=37 Identities=30% Similarity=0.205 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQD 67 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D 67 (473)
++.+|+|+|++||||||++..|...+.. ..+.++..|
T Consensus 3 ~~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~~ 41 (169)
T 1xjc_A 3 AMNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHH 41 (169)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEeC
Confidence 3568999999999999999999988753 346666554
No 249
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=97.04 E-value=0.00031 Score=62.54 Aligned_cols=24 Identities=38% Similarity=0.527 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.++|.|++||||||+++.|+..++
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~ 25 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG 25 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999998875
No 250
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=97.00 E-value=0.00071 Score=64.58 Aligned_cols=48 Identities=15% Similarity=0.170 Sum_probs=35.7
Q ss_pred ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 15 LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
..++++ +...+++ ++|.|++||||||+++.|+..++. +...++..++.
T Consensus 34 ~~l~~~-----~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~-~~i~i~g~~l~ 81 (274)
T 2x8a_A 34 DQFKAL-----GLVTPAG--VLLAGPPGCGKTLLAKAVANESGL-NFISVKGPELL 81 (274)
T ss_dssp HHHHHT-----TCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC-EEEEEETTTTC
T ss_pred HHHHHc-----CCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC-CEEEEEcHHHH
Confidence 345566 6666665 999999999999999999998763 45555555554
No 251
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=97.00 E-value=0.00092 Score=64.74 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+...+++.+|+|.|++||||||+++.|+..+.
T Consensus 94 ~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 125 (302)
T 3b9q_A 94 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 125 (302)
T ss_dssp CCCSSSCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ccccCCCcEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 55667889999999999999999999998874
No 252
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=96.95 E-value=0.00059 Score=58.87 Aligned_cols=40 Identities=15% Similarity=0.195 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCC--EEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~--~~~is~D~~~ 70 (473)
.+..++|.|++||||||+++.++..+...+ ..+++..++.
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~ 76 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMP 76 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhh
Confidence 456899999999999999999998875444 6666665544
No 253
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.93 E-value=0.011 Score=57.59 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=31.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.-|.|.|++|+|||++|+.+++.++...+..++..++.
T Consensus 45 ~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~ 83 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 83 (322)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSC
T ss_pred CceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHH
Confidence 456889999999999999999999854456666766554
No 254
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.91 E-value=0.00043 Score=65.02 Aligned_cols=44 Identities=11% Similarity=0.166 Sum_probs=32.5
Q ss_pred ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 15 LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 15 ~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
..++++ +...+++ ++|.|++||||||+++.|+..++ .++..++.
T Consensus 39 ~~~~~~-----~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~-~~~i~~~~ 82 (254)
T 1ixz_A 39 SRFHEM-----GARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 82 (254)
T ss_dssp HHHHHT-----TCCCCSE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred HHHHHc-----CCCCCCe--EEEECCCCCCHHHHHHHHHHHhC-CCEEEeeH
Confidence 345555 5555555 89999999999999999999876 34555543
No 255
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.90 E-value=0.004 Score=60.07 Aligned_cols=40 Identities=20% Similarity=0.331 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEecCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR---DQRVVLVNQDSF 69 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~---~~~~~~is~D~~ 69 (473)
.++.+|+|.|++||||||++..|+..+. +..+.+++.|.+
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~~ 145 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDTY 145 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCCS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCcc
Confidence 3567999999999999999999998774 245788888875
No 256
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.88 E-value=0.00043 Score=61.33 Aligned_cols=30 Identities=13% Similarity=0.185 Sum_probs=25.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
....+..++|.|++||||||+++.++..+.
T Consensus 34 ~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~ 63 (180)
T 3ec2_A 34 NPEEGKGLTFVGSPGVGKTHLAVATLKAIY 63 (180)
T ss_dssp CGGGCCEEEECCSSSSSHHHHHHHHHHHHH
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 344567899999999999999999998763
No 257
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.88 E-value=0.0014 Score=64.10 Aligned_cols=44 Identities=18% Similarity=0.295 Sum_probs=35.8
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSF 69 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~ 69 (473)
+...+++.+|+|+|++||||||++..|+..+. +..+.+++.|-+
T Consensus 99 ~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~ 144 (320)
T 1zu4_A 99 DFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTF 144 (320)
T ss_dssp CCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred cccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCc
Confidence 56677889999999999999999999998774 234777777743
No 258
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.84 E-value=0.0004 Score=72.89 Aligned_cols=50 Identities=24% Similarity=0.296 Sum_probs=40.1
Q ss_pred cceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+++++|+++ +...++.+ +....++.+++|.|++|||||||.+.|+..+.
T Consensus 286 ~~l~~~~l~~~~~~~~l~~~-----~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~ 337 (538)
T 1yqt_A 286 TLVTYPRLVKDYGSFRLEVE-----PGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE 337 (538)
T ss_dssp EEEEECCEEEEETTEEEEEC-----CEEEETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEeeEEEEECCEEEEeC-----ccccCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3688888865 44456665 66667888999999999999999999998764
No 259
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.84 E-value=0.0008 Score=60.67 Aligned_cols=35 Identities=17% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
.+..|+|+|++||||||+|..|+++. ..+++.|..
T Consensus 33 ~g~~ilI~GpsGsGKStLA~~La~~g----~~iIsdDs~ 67 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSETALELVQRG----HRLIADDRV 67 (205)
T ss_dssp TTEEEEEECCCTTTTHHHHHHHHTTT----CEEEESSEE
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhC----CeEEecchh
Confidence 45789999999999999999999875 378888753
No 260
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.84 E-value=0.00041 Score=73.79 Aligned_cols=50 Identities=24% Similarity=0.319 Sum_probs=40.5
Q ss_pred cceeeccccc--ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ ++..++.+ +....++.+++|.|++|||||||.+.|+..+.
T Consensus 356 ~~l~~~~l~~~~~~~~l~~~-----~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~ 407 (607)
T 3bk7_A 356 TLVEYPRLVKDYGSFKLEVE-----PGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407 (607)
T ss_dssp EEEEECCEEEECSSCEEEEC-----CEEEETTCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEeceEEEecceEEEec-----ccccCCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3688888866 44566666 66667888999999999999999999998664
No 261
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.83 E-value=0.0014 Score=63.60 Aligned_cols=42 Identities=43% Similarity=0.721 Sum_probs=33.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
..+++.+|+|+|++||||||++..|+..+.. ..+.+++.|.+
T Consensus 100 ~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~ 143 (306)
T 1vma_A 100 PPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF 143 (306)
T ss_dssp CSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT
T ss_pred cCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc
Confidence 4567899999999999999999999987742 34777777754
No 262
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=96.82 E-value=0.0006 Score=72.48 Aligned_cols=48 Identities=25% Similarity=0.426 Sum_probs=39.8
Q ss_pred ceee--------ccccc--c-c-ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIEL--------ADDFA--D-D-LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~--------~~~~~--~-~-~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|++ +|+++ + . ..|+++ + ....+.+++|.|++||||||+.+.|+..+.
T Consensus 83 ~i~i~~l~~~~~~~ls~~yg~~~~~l~~v-----s-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~ 142 (607)
T 3bk7_A 83 AISIVNLPEQLDEDCVHRYGVNAFVLYRL-----P-IVKDGMVVGIVGPNGTGKTTAVKILAGQLI 142 (607)
T ss_dssp CCEEEEECTTGGGSEEEECSTTCCEEECC-----C-CCCTTSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred eEEEecCCccccCCeEEEECCCCeeeCCC-----C-CCCCCCEEEEECCCCChHHHHHHHHhCCCC
Confidence 6788 77755 3 2 378888 7 778889999999999999999999997664
No 263
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.81 E-value=0.00058 Score=65.15 Aligned_cols=38 Identities=13% Similarity=0.188 Sum_probs=29.4
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+....++ |+|.|++||||||+++.|+..++ .++..++.
T Consensus 69 ~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~-~~~i~~~~ 106 (278)
T 1iy2_A 69 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASG 106 (278)
T ss_dssp TCCCCCE--EEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCCCCCe--EEEECCCcChHHHHHHHHHHHcC-CCEEEecH
Confidence 5555555 89999999999999999999876 34555543
No 264
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=96.80 E-value=0.0016 Score=64.46 Aligned_cols=32 Identities=31% Similarity=0.468 Sum_probs=28.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+...+++.+|+|.|++||||||+++.|+..+.
T Consensus 151 ~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~ 182 (359)
T 2og2_A 151 QLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLK 182 (359)
T ss_dssp CCCSSSSEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceecCCCeEEEEEcCCCChHHHHHHHHHhhcc
Confidence 55667899999999999999999999998874
No 265
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.78 E-value=0.00058 Score=65.73 Aligned_cols=53 Identities=19% Similarity=0.154 Sum_probs=39.4
Q ss_pred cccc-ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC---CCEEEEec
Q 035513 9 DDFA-DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD---QRVVLVNQ 66 (473)
Q Consensus 9 ~~~~-~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~---~~~~~is~ 66 (473)
++.. +...|+++ +....++.+++|.|++||||||+++.|+..+.. ..+.+++.
T Consensus 16 ~i~t~g~~~Ld~i-----~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 16 GLLFSGCTGINDK-----TLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp CBCCCSCTTHHHH-----HCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CcccCCHHHHHHH-----hcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 3444 45567777 677788899999999999999999999887642 12555554
No 266
>2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.75 E-value=0.00087 Score=67.86 Aligned_cols=44 Identities=20% Similarity=0.252 Sum_probs=29.8
Q ss_pred Cccceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 1 METVIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 1 m~~~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
|..+|+++|+.+ +...++++ .+.|+|.|++|||||||.+.|...
T Consensus 8 ~~~~l~~~~l~~~y~~~~vl~~v-----------sf~I~lvG~sGaGKSTLln~L~g~ 54 (418)
T 2qag_C 8 LEGYVGFANLPNQVYRKSVKRGF-----------EFTLMVVGESGLGKSTLINSLFLT 54 (418)
T ss_dssp -------CCCCCCTTTTTCC-CC-----------CEEEEEECCTTSSHHHHHHHHTTC
T ss_pred CcCcEEEEecceeECCEEEecCC-----------CEEEEEECCCCCcHHHHHHHHhCC
Confidence 456789999976 45567777 366899999999999999999764
No 267
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=96.72 E-value=0.00091 Score=59.30 Aligned_cols=26 Identities=27% Similarity=0.310 Sum_probs=23.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+++|+|++||||||+++.|...+.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~ 31 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALC 31 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhcc
Confidence 56899999999999999999988764
No 268
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=96.72 E-value=0.00096 Score=65.12 Aligned_cols=37 Identities=19% Similarity=0.274 Sum_probs=29.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
++..+++|+|++||||||+.+.|.......++.++.-
T Consensus 2 ~~i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~ 38 (318)
T 1nij_A 2 NPIAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIEN 38 (318)
T ss_dssp CCEEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECS
T ss_pred CcccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEe
Confidence 3467999999999999999999998765455666643
No 269
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=96.68 E-value=0.00049 Score=60.85 Aligned_cols=26 Identities=31% Similarity=0.630 Sum_probs=23.6
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+|+|+|+|||||||+++.|...+..
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~ 28 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRE 28 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 57999999999999999999988763
No 270
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=96.68 E-value=0.00017 Score=74.14 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=35.6
Q ss_pred cceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 3 TVIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 3 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+|+++|+.+.. .++ ++..+++.+++|.|++|||||||++.|+..+
T Consensus 117 ~mi~~~nl~~~y---~~v-----sl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 117 TMKYIYNLHFML---EKI-----RMSNFEGPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp THHHHHHHHHHH---HHH-----HHHSSSCCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred chhhhhhhhehh---hcC-----ceEeCCCCEEEEECCCCCCHHHHHHHHhCcc
Confidence 356777776522 145 5666678899999999999999999999865
No 271
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.68 E-value=0.00031 Score=78.00 Aligned_cols=50 Identities=16% Similarity=0.255 Sum_probs=43.5
Q ss_pred cceeeccccc--c---cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 3 TVIELADDFA--D---DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 3 ~~i~~~~~~~--~---~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+|+++|+++ . ...|+++ |+....+.+++|.|++|||||||.+.|+..+.
T Consensus 670 ~mL~v~nLs~~Y~g~~~~iL~dV-----Sl~I~~GeivaIiGpNGSGKSTLLklLaGll~ 724 (986)
T 2iw3_A 670 AIVKVTNMEFQYPGTSKPQITDI-----NFQCSLSSRIAVIGPNGAGKSTLINVLTGELL 724 (986)
T ss_dssp EEEEEEEEEECCTTCSSCSEEEE-----EEEEETTCEEEECSCCCHHHHHHHHHHTTSSC
T ss_pred ceEEEEeeEEEeCCCCceeeecc-----EEEEcCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3689999975 2 3579999 99999999999999999999999999998764
No 272
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=96.64 E-value=0.0021 Score=62.97 Aligned_cols=41 Identities=34% Similarity=0.545 Sum_probs=31.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
.+++.+|+|.|++||||||+++.|+..+.. -.+.+...|-+
T Consensus 126 ~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~ 168 (328)
T 3e70_C 126 AEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTF 168 (328)
T ss_dssp SCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeeccc
Confidence 367899999999999999999999987742 12455555543
No 273
>1kjw_A Postsynaptic density protein 95; protein-protein interaction, scaffold, neuropeptide; 1.80A {Rattus norvegicus} SCOP: b.34.2.1 c.37.1.1 PDB: 1jxm_A* 1jxo_A
Probab=96.64 E-value=0.002 Score=62.05 Aligned_cols=168 Identities=14% Similarity=0.111 Sum_probs=84.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHH------hhccCccCC-CCccccHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL------QNLHDYNFD-HPDAFDTELLLSDMEK 103 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~------~~~~~~~f~-~~~~~d~~~l~~~l~~ 103 (473)
.+..|+|+|| ||+|+.+.|.+.++. .+. ...+...+ .+..+|.|- +.+ ++...
T Consensus 104 ~~r~ivl~GP---gK~tl~~~L~~~~~~-~~~--------~~vs~TTR~~R~gE~~G~dY~Fv~s~e--------ef~~~ 163 (295)
T 1kjw_A 104 YARPIIILGP---TKDRANDDLLSEFPD-KFG--------SCVPHTTRPKREYEIDGRDYHFVSSRE--------KMEKD 163 (295)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTT-TEE--------CCCCEECSCCCTTCCBTTTBEECSCHH--------HHHHH
T ss_pred CCCEEEEECC---CHHHHHHHHHhhCcc-cee--------eeeeecccCCCCccccCceeEecCCHH--------HHHHH
Confidence 4456888998 799999999987641 121 11111111 112234453 322 22334
Q ss_pred hhcCCceecccccccccccccc--ccccCCCcEEEEecccccCChhh--hhccCeEEEEecChhHHHHHhhhccccccCC
Q 035513 104 LKHGQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRV--RDLMSMKIFVDTDSDVRLSRRIQRDTVERGR 179 (473)
Q Consensus 104 l~~g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~--~~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~ 179 (473)
+.+|..+.+..+....+..... ...+.....+|+|.-.... ..+ ...+-+.|||.+|....++++..|.
T Consensus 164 i~~g~flE~~~~~g~~YGt~~~~V~~~~~~G~~vildid~~g~-~~l~~~~~~pi~IfI~pps~~~L~~L~~R~------ 236 (295)
T 1kjw_A 164 IQAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKRI------ 236 (295)
T ss_dssp HHTTCEEEEEEETTEEEEEEHHHHHHHHHTTCEEEECCCTTHH-HHHHHTTCCCEEEEECCSSHHHHHHHCTTS------
T ss_pred HHCCCcEEEEEEcCcEeeeeHHHHHHHHhcCCeEEEEeCHHHH-HHHHhcccCCeEEEEECCCHHHHHHHHhcC------
Confidence 4556666655444333221111 1113345677777432211 112 2234489999988666666654442
Q ss_pred ChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeeec
Q 035513 180 DIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTK 231 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~~ 231 (473)
+.+.+..++..... .... +....|++|.|+ +.+.+++++.+.|...
T Consensus 237 t~~~i~~rl~~a~~-~e~~----~~~~fd~vivNd-~le~a~~~l~~ii~~~ 282 (295)
T 1kjw_A 237 TEEQARKAFDRATK-LEQE----FTECFSAIVEGD-SFEEIYHKVKRVIEDL 282 (295)
T ss_dssp CHHHHHHHHHHHHH-HHHH----HGGGCSEEECCS-SHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH-HHHh----ccccCeEEEECc-CHHHHHHHHHHHHHhc
Confidence 12233222222111 0001 134578888887 6777777777766543
No 274
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=96.63 E-value=0.001 Score=69.68 Aligned_cols=44 Identities=23% Similarity=0.416 Sum_probs=36.3
Q ss_pred ccccc--c-c-ccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 8 ADDFA--D-D-LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 8 ~~~~~--~-~-~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+|+++ + . ..|.++ + ....+.+++|.|++|||||||.+.|+..+.
T Consensus 25 ~~ls~~yg~~~~~l~~v-----s-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~ 72 (538)
T 1yqt_A 25 EDCVHRYGVNAFVLYRL-----P-VVKEGMVVGIVGPNGTGKSTAVKILAGQLI 72 (538)
T ss_dssp CCEEEECSTTCCEEECC-----C-CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred cCcEEEECCccccccCc-----C-cCCCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 46655 3 2 378888 7 788889999999999999999999998664
No 275
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=96.61 E-value=0.00067 Score=67.75 Aligned_cols=37 Identities=19% Similarity=0.123 Sum_probs=31.7
Q ss_pred cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 16 SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.++++ +...+.+.+|+|.|++||||||+++.|+..++
T Consensus 158 ~l~~~-----~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~ 194 (377)
T 1svm_A 158 FLKCM-----VYNIPKKRYWLFKGPIDSGKTTLAAALLELCG 194 (377)
T ss_dssp HHHHH-----HHCCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred HHHhc-----ccccCCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45555 66777788999999999999999999999876
No 276
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=96.59 E-value=0.0012 Score=64.06 Aligned_cols=28 Identities=25% Similarity=0.211 Sum_probs=25.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
++.+|+|.|++||||||+++.|+..+..
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~ 128 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 128 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 5789999999999999999999988753
No 277
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=96.51 E-value=0.0017 Score=64.56 Aligned_cols=32 Identities=19% Similarity=0.408 Sum_probs=28.5
Q ss_pred CCCCCC--CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 26 TMPTKQ--PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 26 ~~~~~~--~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+....+ ...++|.|++|||||||++.|+..++
T Consensus 162 ~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~ 195 (365)
T 1lw7_A 162 PKEARPFFAKTVAILGGESSGKSVLVNKLAAVFN 195 (365)
T ss_dssp CTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTT
T ss_pred CHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 566666 78999999999999999999999876
No 278
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=96.48 E-value=0.0012 Score=65.03 Aligned_cols=60 Identities=18% Similarity=0.208 Sum_probs=43.1
Q ss_pred ceeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCC
Q 035513 4 VIELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDS 68 (473)
Q Consensus 4 ~i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~ 68 (473)
+++.++..+ ....++++ +....++.+|+|+|++|+||||+++.|+..+. +..+.+++.|-
T Consensus 30 ~ie~~~~~~~~~~~~~~~~l-----~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQALSTQLLDAI-----MPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHHHHHHHHHH-----GGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhHHHHHHHhC-----CcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 345555533 33456666 66667889999999999999999999987763 23467777664
No 279
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.47 E-value=0.0021 Score=58.47 Aligned_cols=39 Identities=28% Similarity=0.267 Sum_probs=31.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
..++.+++|.|++||||||++..|+. ..+.++.+++.+.
T Consensus 17 i~~G~~~~i~G~~GsGKTtl~~~l~~-~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 17 FAPGVLTQVYGPYASGKTTLALQTGL-LSGKKVAYVDTEG 55 (220)
T ss_dssp BCTTSEEEEECSTTSSHHHHHHHHHH-HHCSEEEEEESSC
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH-HcCCcEEEEECCC
Confidence 45567999999999999999999987 3334577777764
No 280
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=96.46 E-value=0.0012 Score=67.97 Aligned_cols=39 Identities=21% Similarity=0.303 Sum_probs=34.2
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
....++++ ++..++ .+++|.|++||||||+.+.|+..+.
T Consensus 16 ~~~~l~~v-----sl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~ 54 (483)
T 3euj_A 16 NWNGFFAR-----TFDFDE-LVTTLSGGNGAGKSTTMAGFVTALI 54 (483)
T ss_dssp EETTEEEE-----EEECCS-SEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred ccccccce-----EEEEcc-ceEEEECCCCCcHHHHHHHHhcCCC
Confidence 34578888 888888 8999999999999999999998775
No 281
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=96.43 E-value=0.0012 Score=66.79 Aligned_cols=29 Identities=31% Similarity=0.312 Sum_probs=25.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
...-+|+|+|++||||||+.+.|...++.
T Consensus 165 ~~ggii~I~GpnGSGKTTlL~allg~l~~ 193 (418)
T 1p9r_A 165 RPHGIILVTGPTGSGKSTTLYAGLQELNS 193 (418)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCC
T ss_pred hcCCeEEEECCCCCCHHHHHHHHHhhcCC
Confidence 45678999999999999999999998864
No 282
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=96.41 E-value=0.0014 Score=58.80 Aligned_cols=24 Identities=25% Similarity=0.286 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++|.|++||||||+.+.|+..+.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~~ 26 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVLK 26 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhcc
Confidence 689999999999999999998764
No 283
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=96.41 E-value=0.0015 Score=62.99 Aligned_cols=39 Identities=21% Similarity=0.624 Sum_probs=30.4
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
.+.|..+.+.||+|+|||++|+.+++.++ ..+..+++.+
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~-~~~i~v~~~~ 71 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMG-INPIMMSAGE 71 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHT-CCCEEEEHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC-CCEEEEeHHH
Confidence 45567889999999999999999999986 3355555433
No 284
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=96.39 E-value=0.0009 Score=67.68 Aligned_cols=34 Identities=26% Similarity=0.311 Sum_probs=30.1
Q ss_pred ccccccCCCCCCCCCCEE--EEEEcCCCCcHHHHHHHHHHH
Q 035513 17 LQSASSESTTMPTKQPFV--IGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 17 l~~~~~~~~~~~~~~~~i--I~I~G~sGSGKTTla~~La~~ 55 (473)
|+++ ++..+.+.+ ++|.|++|||||||.+.|+..
T Consensus 30 L~~v-----sl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 30 DQLV-----NKSVSQGFCFNILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp HHHH-----HHSCC-CCEEEEEEECSTTSSSHHHHHHHHTS
T ss_pred cCCC-----ceEecCCCeeEEEEECCCCCCHHHHHHHHhCc
Confidence 8888 888888888 999999999999999999864
No 285
>3tvt_A Disks large 1 tumor suppressor protein; DLG, SRC-homology-3, guanylate kinase, phosphorylation-depen cell membrane; 1.60A {Drosophila melanogaster} PDB: 3uat_A*
Probab=96.36 E-value=0.002 Score=61.98 Aligned_cols=168 Identities=14% Similarity=0.147 Sum_probs=81.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHH------hhccCccCCCCccccHHHHHHHHHHh
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL------QNLHDYNFDHPDAFDTELLLSDMEKL 104 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~------~~~~~~~f~~~~~~d~~~l~~~l~~l 104 (473)
.++.|+|+|| ||+|+.+.|.+.++. .|...++...+ .+..+|.|-. ..+. +-..+
T Consensus 99 ~~RpvVl~Gp---~K~tl~~~Ll~~~p~---------~f~~sVs~TTR~pR~gE~dG~dY~Fv~----s~e~---fe~~i 159 (292)
T 3tvt_A 99 YTRPVIILGP---LKDRINDDLISEYPD---------KFGSCVPHTTRPKREYEVDGRDYHFVS----SREQ---MERDI 159 (292)
T ss_dssp SCCCEEEEST---THHHHHHHHHHHCTT---------TEECCCCEECSCCCTTCCBTTTBEECS----CHHH---HHHHH
T ss_pred CCCeEEEeCC---CHHHHHHHHHHhChh---------hccccccCCccCCcCCccCCccccccC----CHHH---HHHHH
Confidence 3455778887 499999999998762 22222221111 1122344421 1111 22334
Q ss_pred hcCCceecccccccccccccc--ccccCCCcEEEEecccccCChhhh--hccCeEEEEecChhHHHHHhhhccccccCCC
Q 035513 105 KHGQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVR--DLMSMKIFVDTDSDVRLSRRIQRDTVERGRD 180 (473)
Q Consensus 105 ~~g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~--~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~~~ 180 (473)
.++..+.+..+....+..... ...+..+..+|+|--.... ..+. ...-+.||+.+|.-..++++.+|.. .+.
T Consensus 160 ~~~~flE~a~~~gn~YGT~~~~V~~~~~~gk~viLdid~qg~-~~lk~~~~~pi~IFI~PpS~e~L~~r~~~r~---~e~ 235 (292)
T 3tvt_A 160 QNHLFIEAGQYNDNLYGTSVASVREVAEKGKHCILDVSGNAI-KRLQVAQLYPVAVFIKPKSVDSVMEMNRRMT---EEQ 235 (292)
T ss_dssp HTTCEEEEEEETTEEEEEEHHHHHHHHHHTCEEEECCCTHHH-HHHHHTTCCCEEEEECCSCHHHHHHTCTTSC---TTH
T ss_pred hcCceEEEEEEccceeEEehHHHHHHHHcCCcEEEeccchhh-hhcccccccceEEEEECCCHHHHHHHHhCCC---chh
Confidence 455555554443333221111 1112345667776321111 1121 2223789999876655555544321 122
Q ss_pred hHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 181 IEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
.+.+..+..+.. .++ ....|++|.|+ +.+.+++++.+.|.+
T Consensus 236 ~~~~~~r~~k~e----~e~----~~~fD~vIvNd-dle~a~~~l~~iI~~ 276 (292)
T 3tvt_A 236 AKKTYERAIKME----QEF----GEYFTGVVQGD-TIEEIYSKVKSMIWS 276 (292)
T ss_dssp HHHHHHHHHHHH----HHH----TTTCSEEECCS-SHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----Hhh----hhhCCEEEECc-CHHHHHHHHHHHHHH
Confidence 333333322211 111 34579999887 667777777766654
No 286
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.35 E-value=0.0051 Score=62.47 Aligned_cols=40 Identities=25% Similarity=0.374 Sum_probs=33.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~~ 70 (473)
+|.+|+++|++||||||++..|+..+.. ..+.++++|-+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 5899999999999999999999987753 457788888664
No 287
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.34 E-value=0.0045 Score=62.82 Aligned_cols=40 Identities=35% Similarity=0.488 Sum_probs=33.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSF 69 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~ 69 (473)
.++.+|+++|++||||||++..|+..+. +..+.+++.|-+
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~ 136 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVY 136 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCcc
Confidence 3589999999999999999999998774 345778888854
No 288
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=96.32 E-value=0.001 Score=73.88 Aligned_cols=131 Identities=14% Similarity=0.118 Sum_probs=71.8
Q ss_pred eeeccccc---ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH-hCC------CCEEEEecC--CCCCC
Q 035513 5 IELADDFA---DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR-LRD------QRVVLVNQD--SFYHS 72 (473)
Q Consensus 5 i~~~~~~~---~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~-l~~------~~~~~is~D--~~~~~ 72 (473)
|...|+++ +...|+++ ++...++.+++|.|++|||||||.+.|+.- +.+ ....++..+ .++..
T Consensus 436 L~~~~ls~~yg~~~iL~~v-----sl~I~~Ge~v~LiGpNGsGKSTLLk~LagG~i~g~~~~~~~~~~~v~q~~~~~~~~ 510 (986)
T 2iw3_A 436 LCNCEFSLAYGAKILLNKT-----QLRLKRARRYGICGPNGCGKSTLMRAIANGQVDGFPTQEECRTVYVEHDIDGTHSD 510 (986)
T ss_dssp EEEEEEEEEETTEEEEEEE-----EEEEETTCEEEEECSTTSSHHHHHHHHHHTCSTTCCCTTTSCEEETTCCCCCCCTT
T ss_pred eEEeeEEEEECCEEeEecc-----eEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCccccceeEEEEcccccccccC
Confidence 34446655 45689999 999999999999999999999999999841 100 112222221 12222
Q ss_pred CCHHHHhhccCccCCCCccccHHHHHHHHHHhhcCC-c--eeccccccccccccccccc-cCCCcEEEEecccccCChh
Q 035513 73 LTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQ-A--VSIPDYDFKSHKRKQQSRL-INPSDVFILEGILVLHDPR 147 (473)
Q Consensus 73 ~~~~~~~~~~~~~f~~~~~~d~~~l~~~l~~l~~g~-~--i~~p~~~~~~~~~~~~~~~-~~~~~viIlEG~~~l~~~~ 147 (473)
++....-.. . + .. . .+...+.+..+.-.. . -....++....+++..++. +.+++++++|.+....++.
T Consensus 511 ltv~e~l~~-~--~--~~-~-~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~ 582 (986)
T 2iw3_A 511 TSVLDFVFE-S--G--VG-T-KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTV 582 (986)
T ss_dssp SBHHHHHHT-T--C--SS-C-HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHH
T ss_pred CcHHHHHHH-h--h--cC-H-HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHH
Confidence 222111100 0 0 00 1 233444444432210 0 1112344444455544333 5679999999998888863
No 289
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=96.32 E-value=0.0016 Score=59.49 Aligned_cols=25 Identities=20% Similarity=0.123 Sum_probs=22.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+.+++|.|++|||||||.+.|+..
T Consensus 21 ~Ge~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 21 TNTIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp HCSEEEEECCTTSSTTHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999876
No 290
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.30 E-value=0.015 Score=59.35 Aligned_cols=39 Identities=10% Similarity=0.140 Sum_probs=28.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.-|.|.|++|+|||++|+.++..+....+..++..++.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~ 205 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLV 205 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHH
Confidence 356889999999999999999999843445556665554
No 291
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=96.30 E-value=0.0017 Score=66.31 Aligned_cols=48 Identities=13% Similarity=0.173 Sum_probs=37.5
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++++|+++ +...|+++ ++..++.+++|.|++|||||||.+.|+....
T Consensus 131 ~l~~~~v~~~~~tg~~vld~v------l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 131 PLQRTPIEHVLDTGVRAINAL------LTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp TTTSCCCCSBCCCSCHHHHHH------SCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeccceecCCCceEEeee------EEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 567777765 23355555 4566778999999999999999999998875
No 292
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=96.27 E-value=0.00041 Score=69.01 Aligned_cols=40 Identities=33% Similarity=0.414 Sum_probs=32.2
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
+...+.+.+|+|+|++||||||+.+.|...++. .+...+.
T Consensus 169 ~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 169 RRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 666677889999999999999999999988763 3444444
No 293
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.27 E-value=0.0027 Score=59.62 Aligned_cols=37 Identities=16% Similarity=0.225 Sum_probs=28.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.-|.|.|++|+||||+++.|+..++. .+..++..++.
T Consensus 46 ~~vll~G~~GtGKT~la~~la~~~~~-~~~~i~~~~~~ 82 (257)
T 1lv7_A 46 KGVLMVGPPGTGKTLLAKAIAGEAKV-PFFTISGSDFV 82 (257)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTC-CEEEECSCSST
T ss_pred CeEEEECcCCCCHHHHHHHHHHHcCC-CEEEEeHHHHH
Confidence 34889999999999999999998862 35556555544
No 294
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.26 E-value=0.005 Score=57.60 Aligned_cols=40 Identities=18% Similarity=0.219 Sum_probs=31.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
..+.-|.|.|++|+||||+|+.+++.++ ..+..++..++.
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~-~~~~~~~~~~~~ 76 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQ-VPFLAMAGAEFV 76 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CCEEEEETTTTS
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-CCEEEechHHHH
Confidence 3445688999999999999999999886 236666666654
No 295
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=96.25 E-value=0.0018 Score=59.22 Aligned_cols=39 Identities=23% Similarity=0.355 Sum_probs=28.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQD 67 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D 67 (473)
..++.+++|.|++||||||+++.|+..+. ...+.+++.+
T Consensus 20 i~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~ 60 (235)
T 2w0m_A 20 IPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTE 60 (235)
T ss_dssp EETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESS
T ss_pred CcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcc
Confidence 34567899999999999999999986542 1235555543
No 296
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=96.24 E-value=0.0027 Score=65.72 Aligned_cols=42 Identities=14% Similarity=0.225 Sum_probs=32.6
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+...+++ |+|.|++|+||||+++.|+..++ .++..++..++.
T Consensus 60 g~~ip~G--vLL~GppGtGKTtLaraIa~~~~-~~~i~i~g~~~~ 101 (499)
T 2dhr_A 60 GARIPKG--VLLVGPPGVGKTHLARAVAGEAR-VPFITASGSDFV 101 (499)
T ss_dssp SCCCCSE--EEEECSSSSSHHHHHHHHHHHTT-CCEEEEEGGGGT
T ss_pred cCCCCce--EEEECCCCCCHHHHHHHHHHHhC-CCEEEEehhHHH
Confidence 4444444 89999999999999999999876 456677765554
No 297
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=96.23 E-value=0.003 Score=55.53 Aligned_cols=36 Identities=22% Similarity=0.285 Sum_probs=28.9
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
...-|.|+|+||+||||+|..|.++ |..+++-|...
T Consensus 15 ~G~gvli~G~SGaGKStlal~L~~r----G~~lvaDD~v~ 50 (181)
T 3tqf_A 15 DKMGVLITGEANIGKSELSLALIDR----GHQLVCDDVID 50 (181)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHHT----TCEEEESSEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc----CCeEecCCEEE
Confidence 3567999999999999999999874 47777666443
No 298
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=96.23 E-value=0.0015 Score=64.47 Aligned_cols=48 Identities=17% Similarity=0.115 Sum_probs=37.6
Q ss_pred ceeeccccc----ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA----DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~----~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++.+++.+ +...++++ ++..++.+++|.|++||||||+.+.|+....
T Consensus 45 ~i~~~~l~~~~~tg~~ald~l------l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 45 PLLRQVIDQPFILGVRAIDGL------LTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp STTCCCCCSEECCSCHHHHHH------SCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CeeecccceecCCCCEEEEee------eeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 577777766 23355555 4566778999999999999999999998875
No 299
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.22 E-value=0.0032 Score=60.76 Aligned_cols=28 Identities=18% Similarity=0.167 Sum_probs=24.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+..|.|.|++|+||||+|+.|+..++
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~ 74 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQ 74 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTT
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhC
Confidence 3456789999999999999999999886
No 300
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=96.16 E-value=0.003 Score=60.12 Aligned_cols=25 Identities=32% Similarity=0.444 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.++|.|++||||||+.+.|+....
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~~ 27 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQV 27 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5799999999999999999998764
No 301
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.10 E-value=0.0034 Score=62.21 Aligned_cols=28 Identities=29% Similarity=0.315 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
...-+|+|+|++||||||+.+.|...++
T Consensus 121 ~~~g~i~I~GptGSGKTTlL~~l~g~~~ 148 (356)
T 3jvv_A 121 VPRGLVLVTGPTGSGKSTTLAAMLDYLN 148 (356)
T ss_dssp CSSEEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccc
Confidence 3456999999999999999999988775
No 302
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A* 1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B* 1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A* 1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Probab=96.10 E-value=0.0025 Score=62.24 Aligned_cols=30 Identities=17% Similarity=0.243 Sum_probs=23.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQR 60 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~ 60 (473)
+++.|.|.|+.||||||+++.|++.++..+
T Consensus 3 ~~~fI~~EG~dGsGKTT~~~~La~~L~~~g 32 (331)
T 1e2k_A 3 TLLRVYIDGPHGMGKTTTTQLLVALGSRDD 32 (331)
T ss_dssp EEEEEEECSCTTSSHHHHHHHHTC----CC
T ss_pred ccEEEEEECCCCCCHHHHHHHHHHHhhhCC
Confidence 457899999999999999999999887555
No 303
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.09 E-value=0.0036 Score=55.60 Aligned_cols=33 Identities=27% Similarity=0.473 Sum_probs=25.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
+|.|+|++||||||+|..|+.. + ....++.+..
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~-~~~~yiaT~~ 33 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-A-PQVLYIATSQ 33 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-C-SSEEEEECCC
T ss_pred CEEEECCCCCcHHHHHHHHHhc-C-CCeEEEecCC
Confidence 3789999999999999999876 4 3466666643
No 304
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A {Herpes simplex virus} SCOP: c.37.1.1
Probab=96.09 E-value=0.003 Score=62.67 Aligned_cols=32 Identities=16% Similarity=0.254 Sum_probs=24.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCE
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRV 61 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~ 61 (473)
.+++.|.|.|+.||||||+++.|++.+...++
T Consensus 47 ~~~~fIt~EG~dGsGKTT~~~~Lae~L~~~gv 78 (376)
T 1of1_A 47 PTLLRVYIDGPHGMGKTTTTQLLVALGSRDDI 78 (376)
T ss_dssp CEEEEEEECSSTTSSHHHHHHHHHC----CCE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhhhCCE
Confidence 45678999999999999999999998875553
No 305
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.09 E-value=0.0038 Score=62.25 Aligned_cols=29 Identities=31% Similarity=0.360 Sum_probs=26.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+.+.+|+|+|++||||||+.+.|+..+.
T Consensus 133 ~~~g~~i~ivG~~GsGKTTll~~l~~~~~ 161 (372)
T 2ewv_A 133 HRKMGLILVTGPTGSGKSTTIASMIDYIN 161 (372)
T ss_dssp TSSSEEEEEECSSSSSHHHHHHHHHHHHH
T ss_pred hcCCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 45678999999999999999999998775
No 306
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=96.06 E-value=0.0043 Score=54.73 Aligned_cols=24 Identities=25% Similarity=0.458 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.+|+|++||||||+.++|.-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 789999999999999999988765
No 307
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=96.05 E-value=0.0039 Score=66.13 Aligned_cols=30 Identities=20% Similarity=0.443 Sum_probs=26.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
...++.+++|.|++||||||+.+.|+..+.
T Consensus 99 ~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~ 128 (608)
T 3j16_B 99 TPRPGQVLGLVGTNGIGKSTALKILAGKQK 128 (608)
T ss_dssp CCCTTSEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCCCCCEEEEECCCCChHHHHHHHHhcCCC
Confidence 456778999999999999999999998764
No 308
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.04 E-value=0.0039 Score=54.72 Aligned_cols=26 Identities=19% Similarity=0.198 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..+.|.|++|+||||+++.+++.+.
T Consensus 43 ~~~~ll~G~~G~GKT~l~~~~~~~~~ 68 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIVEGLAQRII 68 (195)
T ss_dssp SCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998873
No 309
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.02 E-value=0.0031 Score=61.84 Aligned_cols=35 Identities=26% Similarity=0.319 Sum_probs=27.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
..++|.|++|+||||+++.|+..++. .+...+...
T Consensus 52 ~~~ll~Gp~G~GKTTLa~~ia~~l~~-~~~~~sg~~ 86 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLAHIIASELQT-NIHVTSGPV 86 (334)
T ss_dssp CCEEEESSTTSSHHHHHHHHHHHHTC-CEEEEETTT
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEechH
Confidence 56899999999999999999999862 234444433
No 310
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=96.01 E-value=0.0085 Score=57.69 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=31.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDS 68 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~ 68 (473)
++.+|+|+|++||||||++..|+..+. +..+.+++.|-
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~ 136 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCc
Confidence 778999999999999999999998764 23467777764
No 311
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.99 E-value=0.0036 Score=57.43 Aligned_cols=39 Identities=18% Similarity=0.192 Sum_probs=29.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
.+..+.|.|++|+||||+++.+++.+.. ..+.+++.+++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 3457899999999999999999987652 33566665443
No 312
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=95.98 E-value=0.0042 Score=54.41 Aligned_cols=26 Identities=15% Similarity=0.143 Sum_probs=22.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+..+.|.|++|+||||+++.+++.+.
T Consensus 43 ~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHH
Confidence 45678999999999999999998874
No 313
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=95.98 E-value=0.024 Score=55.98 Aligned_cols=41 Identities=17% Similarity=0.274 Sum_probs=31.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~ 70 (473)
.++.++.|.|++|||||||+..++..+. +..+.+++...-.
T Consensus 59 ~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 59 PRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp ETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 3567999999999999999999987653 2246778776543
No 314
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=95.98 E-value=0.0046 Score=57.05 Aligned_cols=39 Identities=15% Similarity=0.413 Sum_probs=29.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH--hC------CCCEEEEecCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR--LR------DQRVVLVNQDS 68 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~--l~------~~~~~~is~D~ 68 (473)
.++.+++|.|++||||||++..|+.. ++ ..++.+++...
T Consensus 22 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 22 ETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 45679999999999999999999984 31 23466666654
No 315
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.94 E-value=0.00047 Score=67.71 Aligned_cols=40 Identities=28% Similarity=0.325 Sum_probs=30.7
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEe
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVN 65 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is 65 (473)
+...+.+.+++|.|++||||||+.+.|+..++. .+...+.
T Consensus 165 ~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~ 205 (330)
T 2pt7_A 165 KDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIE 205 (330)
T ss_dssp HHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEE
T ss_pred hhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEEC
Confidence 444556678999999999999999999988753 3444444
No 316
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=95.94 E-value=0.0043 Score=59.44 Aligned_cols=38 Identities=13% Similarity=0.158 Sum_probs=29.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.-|.|.|++|+||||+|+.+++.++ ..+..++..++.
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~-~~~~~i~~~~l~ 91 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECS-ATFLNISAASLT 91 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTT-CEEEEEESTTTS
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhC-CCeEEeeHHHHh
Confidence 45789999999999999999999886 224455555443
No 317
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.93 E-value=0.0086 Score=59.22 Aligned_cols=38 Identities=24% Similarity=0.372 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQD 67 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D 67 (473)
++..+|+|+|.+|+||||++..|+..+. +..+.+++.|
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~~D 116 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLAVD 116 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEEC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEecC
Confidence 4578999999999999999999988763 3457788777
No 318
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=95.84 E-value=0.0062 Score=57.88 Aligned_cols=39 Identities=18% Similarity=0.224 Sum_probs=29.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.+.-+.|.|++|+||||+++.+++.++. .+..++..++.
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~-~~~~v~~~~~~ 88 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNA-TFIRVVGSELV 88 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTC-EEEEEEGGGGC
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCC-CEEEEehHHHH
Confidence 3445899999999999999999998862 24445554444
No 319
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=95.83 E-value=0.0077 Score=57.87 Aligned_cols=40 Identities=25% Similarity=0.379 Sum_probs=29.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC------CCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD------QRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~------~~~~~is~D~~~ 70 (473)
.+.-+.|.|++|+||||+|+.+++.+.. ..+..++..++.
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~ 111 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLV 111 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhh
Confidence 3456899999999999999999988742 125555555444
No 320
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.83 E-value=0.011 Score=60.04 Aligned_cols=42 Identities=31% Similarity=0.450 Sum_probs=34.8
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEecCCCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR---DQRVVLVNQDSFY 70 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~---~~~~~~is~D~~~ 70 (473)
.+++.+|+++|.+||||||++..|+..+. +..+.++++|-+.
T Consensus 97 ~~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~r 141 (433)
T 2xxa_A 97 AQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYR 141 (433)
T ss_dssp SSSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCCC
Confidence 35678999999999999999999997764 4568889998654
No 321
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.82 E-value=0.0083 Score=56.71 Aligned_cols=28 Identities=21% Similarity=0.230 Sum_probs=25.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.-+.|.|++|+||||+|+.+++.++
T Consensus 62 ~~~~~vLl~G~~GtGKT~la~~ia~~~~ 89 (272)
T 1d2n_A 62 TPLVSVLLEGPPHSGKTALAAKIAEESN 89 (272)
T ss_dssp CSEEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4457899999999999999999999876
No 322
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=95.82 E-value=0.0049 Score=55.39 Aligned_cols=25 Identities=24% Similarity=0.203 Sum_probs=22.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.|.|++|+||||+++.++..+.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~ 79 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELA 79 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 5788999999999999999998774
No 323
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=95.80 E-value=0.011 Score=58.20 Aligned_cols=38 Identities=21% Similarity=0.404 Sum_probs=29.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQD 67 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D 67 (473)
....+|+|+|++||||||+.+.|...+. ...+.++..|
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~d 111 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVD 111 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeec
Confidence 4578999999999999999999987653 1246666655
No 324
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.78 E-value=0.0061 Score=61.73 Aligned_cols=41 Identities=22% Similarity=0.357 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
..+.=|.+.||||+|||++|+++|..++ ..+..++..++..
T Consensus 204 ~~prGiLL~GPPGtGKT~lakAiA~~~~-~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 204 DPPRGVLLYGPPGTGKTMLVKAVANSTK-AAFIRVNGSEFVH 244 (428)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHHHHT-CEEEEEEGGGTCC
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhC-CCeEEEecchhhc
Confidence 3445689999999999999999999987 2345555555543
No 325
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.77 E-value=0.009 Score=61.82 Aligned_cols=41 Identities=29% Similarity=0.394 Sum_probs=32.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~ 70 (473)
.++.+|+|+|.+||||||++..|+..+. +..+.+++.|-+.
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~~r 141 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICADTFR 141 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccccc
Confidence 5678999999999999999999997764 3457888887653
No 326
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.76 E-value=0.0063 Score=61.68 Aligned_cols=40 Identities=13% Similarity=0.156 Sum_probs=31.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.|.=|.+.||||+|||++|+++|..++ ..+..++..++.
T Consensus 213 ~~prGvLLyGPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~ 252 (434)
T 4b4t_M 213 RAPKGALMYGPPGTGKTLLARACAAQTN-ATFLKLAAPQLV 252 (434)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGC
T ss_pred CCCCeeEEECcCCCCHHHHHHHHHHHhC-CCEEEEehhhhh
Confidence 4456799999999999999999999987 234555555554
No 327
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.75 E-value=0.011 Score=57.03 Aligned_cols=43 Identities=28% Similarity=0.379 Sum_probs=33.5
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCC
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSF 69 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~ 69 (473)
+...+ +.+|+++|++|+||||++..|+..+. +..+.+++.|-+
T Consensus 93 ~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 93 IPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp SCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 34444 88999999999999999999998764 234777777754
No 328
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.75 E-value=0.013 Score=59.33 Aligned_cols=38 Identities=26% Similarity=0.285 Sum_probs=31.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDS 68 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~ 68 (473)
++.+|+++|++||||||++..|+..+.. ..+.+++.|-
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 6789999999999999999999988753 3477777764
No 329
>4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans}
Probab=95.69 E-value=0.0025 Score=64.32 Aligned_cols=36 Identities=14% Similarity=0.214 Sum_probs=31.4
Q ss_pred cccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 16 SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 16 ~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.++++ ++....+ +++|+|++||||||+.+.|.-.++
T Consensus 50 ~l~~v-----~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~ 85 (415)
T 4aby_A 50 TITQL-----ELELGGG-FCAFTGETGAGKSIIVDALGLLLG 85 (415)
T ss_dssp TEEEE-----EEECCSS-EEEEEESHHHHHHHHTHHHHHHTT
T ss_pred ceeeE-----EEecCCC-cEEEECCCCCCHHHHHHHHHHHhC
Confidence 56677 7777888 999999999999999999988776
No 330
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.67 E-value=0.0072 Score=61.34 Aligned_cols=41 Identities=15% Similarity=0.263 Sum_probs=31.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
+.|.=|.+.||||+|||++|+++|..++ ..+..++..++..
T Consensus 213 ~~prGvLL~GPPGtGKTllAkAiA~e~~-~~~~~v~~s~l~s 253 (437)
T 4b4t_L 213 KPPKGVLLYGPPGTGKTLLAKAVAATIG-ANFIFSPASGIVD 253 (437)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHT-CEEEEEEGGGTCC
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhC-CCEEEEehhhhcc
Confidence 3456689999999999999999999987 2355556655553
No 331
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.65 E-value=0.0042 Score=61.36 Aligned_cols=30 Identities=20% Similarity=0.206 Sum_probs=26.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.....+.+++|.|++|||||||++.|+...
T Consensus 126 ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 126 GGIETQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345677899999999999999999999876
No 332
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=95.62 E-value=0.0071 Score=63.28 Aligned_cols=38 Identities=26% Similarity=0.416 Sum_probs=30.0
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+.|+.+ . ..+++.+++|.|++||||||+.+.|+..+.
T Consensus 13 ~f~l~~l-----~-~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~ 50 (538)
T 3ozx_A 13 GFKLFGL-----P-TPKNNTILGVLGKNGVGKTTVLKILAGEII 50 (538)
T ss_dssp SCEEECC-----C-CCCTTEEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred ceeecCC-----C-CCCCCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 4566666 2 344668999999999999999999997654
No 333
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.62 E-value=0.0015 Score=71.57 Aligned_cols=46 Identities=20% Similarity=0.273 Sum_probs=38.1
Q ss_pred cceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHH-HHHH
Q 035513 3 TVIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNM-IISR 55 (473)
Q Consensus 3 ~~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~-La~~ 55 (473)
..|+++|+... .|+++ +.....+.+++|+|++|||||||++. |...
T Consensus 501 ~~L~v~~l~~~--~L~~v-----sl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~ 547 (842)
T 2vf7_A 501 GWLELNGVTRN--NLDNL-----DVRFPLGVMTSVTGVSGSGKSTLVSQALVDA 547 (842)
T ss_dssp CEEEEEEEEET--TEEEE-----EEEEESSSEEEEECCTTSSHHHHCCCCCHHH
T ss_pred ceEEEEeeeec--ccccc-----eEEEcCCCEEEEEcCCCcCHHHHHHHHHHHH
Confidence 35788888653 58899 88999999999999999999999996 5533
No 334
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.62 E-value=0.012 Score=54.27 Aligned_cols=39 Identities=18% Similarity=0.248 Sum_probs=28.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh--CCCCEEEEecCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRL--RDQRVVLVNQDS 68 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l--~~~~~~~is~D~ 68 (473)
.++.+++|.|++||||||++..++... .+.++.+++.+.
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 456789999999999999998886543 223466776643
No 335
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.61 E-value=0.0051 Score=52.35 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
-|.|.|++|+|||++|+.|...... ..+. +++..+
T Consensus 26 ~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~ 62 (145)
T 3n70_A 26 AVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTP 62 (145)
T ss_dssp CEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCT
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCC
Confidence 4789999999999999999886532 2234 555443
No 336
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.59 E-value=0.0067 Score=60.75 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=30.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
.|.=|.+.||||+|||++|+++|..++ ..+..++..++..
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~-~~f~~v~~s~l~s 220 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTD-CKFIRVSGAELVQ 220 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHT-CEEEEEEGGGGSC
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhC-CCceEEEhHHhhc
Confidence 345589999999999999999999987 2344455555543
No 337
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=95.58 E-value=0.0058 Score=60.53 Aligned_cols=34 Identities=24% Similarity=0.244 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+.-|.|.|++|+||||+|+.|++.++ ..+..++.
T Consensus 51 ~~~vll~GppGtGKT~la~~ia~~~~-~~~~~~~~ 84 (363)
T 3hws_A 51 KSNILLIGPTGSGKTLLAETLARLLD-VPFTMADA 84 (363)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcC-CCEEEech
Confidence 34688999999999999999999986 22444444
No 338
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=95.56 E-value=0.013 Score=56.17 Aligned_cols=39 Identities=18% Similarity=0.242 Sum_probs=30.0
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCC--CEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~--~~~~is~D~~~ 70 (473)
...+.|.|++|+||||+|+.|++.+... .+..+++..+.
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~ 87 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYM 87 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCC
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeeccccc
Confidence 3579999999999999999999987432 25666665544
No 339
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.54 E-value=0.016 Score=52.60 Aligned_cols=37 Identities=22% Similarity=0.359 Sum_probs=28.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQD 67 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D 67 (473)
+...|+|+|.+||||||+++.|...+.. ..+.+++.|
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~~d 66 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAMLGD 66 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEECS
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEecC
Confidence 4578999999999999999999887532 235666554
No 340
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=95.54 E-value=0.024 Score=52.98 Aligned_cols=41 Identities=27% Similarity=0.343 Sum_probs=32.5
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQDS 68 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D~ 68 (473)
...+..++++.|..||||||++..|+..+. +..+.+++.|-
T Consensus 10 ~~~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~D~ 51 (262)
T 1yrb_A 10 HGMASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNLDT 51 (262)
T ss_dssp TTCCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEECCS
T ss_pred CCcceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344678999999999999999999997664 23477888774
No 341
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=95.52 E-value=0.0076 Score=53.89 Aligned_cols=25 Identities=16% Similarity=0.290 Sum_probs=22.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
....|+|.|++|||||||.+.|...
T Consensus 4 ~~~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 4 YLFKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECcCCCCHHHHHHHHhcC
Confidence 3478999999999999999999864
No 342
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET: BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Probab=95.49 E-value=0.0048 Score=60.47 Aligned_cols=33 Identities=18% Similarity=0.114 Sum_probs=28.0
Q ss_pred CCCCCEEEEEEcCCCCcHHHHH-HHHHHHhCCCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVC-NMIISRLRDQR 60 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla-~~La~~l~~~~ 60 (473)
++.+++.|.|.|+.||||||++ +.|++.++..+
T Consensus 8 ~~~~~~~I~iEG~~GaGKTT~~~~~L~~~l~~~g 41 (341)
T 1osn_A 8 VKMGVLRIYLDGAYGIGKTTAAEEFLHHFAITPN 41 (341)
T ss_dssp CCEEEEEEEEEESSSSCTTHHHHHHHHTTTTSGG
T ss_pred ccCCceEEEEeCCCCCCHHHHHHHHHHHHHhhCC
Confidence 3445689999999999999999 99999887544
No 343
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=95.49 E-value=0.0079 Score=53.54 Aligned_cols=24 Identities=17% Similarity=0.325 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
...|+|.|++|||||||.+.|...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~ 52 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRN 52 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 478999999999999999999864
No 344
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=95.48 E-value=0.0066 Score=61.70 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=27.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
+.-|.+.|++|+||||+|+.|++.++. .+..++...+
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~-~~~~v~~~~~ 86 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANA-PFIKVEATKF 86 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTC-CEEEEEGGGG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCC-Cceeecchhh
Confidence 345889999999999999999999872 2444444333
No 345
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.48 E-value=0.0024 Score=68.92 Aligned_cols=34 Identities=24% Similarity=0.391 Sum_probs=29.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMI 52 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L 52 (473)
...|+++ ++..+++.+++|.|++||||||+.+.+
T Consensus 335 ~~~L~~v-----sl~I~~Ge~vaIiGpnGsGKSTLl~~i 368 (670)
T 3ux8_A 335 EHNLKNV-----SVKIPLGTFVAVTGVSGSGKSTLVNEV 368 (670)
T ss_dssp STTCCSE-----EEEEETTSEEEEECSTTSSHHHHHTTT
T ss_pred ccccccc-----eeEecCCCEEEEEeeCCCCHHHHHHHH
Confidence 3468888 888888999999999999999999755
No 346
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=95.46 E-value=0.0074 Score=61.33 Aligned_cols=41 Identities=27% Similarity=0.364 Sum_probs=33.3
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~ 70 (473)
.++.+|+|+|++||||||++..|+..+. +..+.++++|-+.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~r 139 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAADTYR 139 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCCC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeccccC
Confidence 4467899999999999999999998763 2358888888754
No 347
>2xkx_A Disks large homolog 4; structural protein, scaffold protein, membrane associated GU kinase; 22.9A {Rattus norvegicus}
Probab=95.45 E-value=0.031 Score=60.67 Aligned_cols=168 Identities=15% Similarity=0.129 Sum_probs=84.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCCCCCHHHH------hhccCccCC-CCccccHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL------QNLHDYNFD-HPDAFDTELLLSDME 102 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~~~~~~~~------~~~~~~~f~-~~~~~d~~~l~~~l~ 102 (473)
..++.|+|+||+ |+|+.+.|.+.++. .|........+ .+..+|.|- ..+ ++..
T Consensus 529 ~~~r~vvl~GP~---K~tl~~~L~~~~~~---------~~~~~vs~TTR~~r~gE~~G~dY~Fv~s~~--------~f~~ 588 (721)
T 2xkx_A 529 HYARPIIILGPT---KDRANDDLLSEFPD---------KFGSCVPHTTRPKREYEIDGRDYHFVSSRE--------KMEK 588 (721)
T ss_pred CCCCEEEEECCC---HHHHHHHHHHhCcc---------ceeecccccccCCCCCccCCceeEEecCHH--------HHHH
Confidence 345678899994 99999999887641 11111111111 112234453 322 2334
Q ss_pred HhhcCCceecccccccccccccc--ccccCCCcEEEEecccccCChhhh--hccCeEEEEecChhHHHHHhhhccccccC
Q 035513 103 KLKHGQAVSIPDYDFKSHKRKQQ--SRLINPSDVFILEGILVLHDPRVR--DLMSMKIFVDTDSDVRLSRRIQRDTVERG 178 (473)
Q Consensus 103 ~l~~g~~i~~p~~~~~~~~~~~~--~~~~~~~~viIlEG~~~l~~~~~~--~~~Dl~I~L~~~~e~~~~R~~~R~~~~~~ 178 (473)
.+.+++.+.+..|....+..... ...+.....+|+|.-.... ..+. ..+-+.||+.++....++++..|.
T Consensus 589 ~i~~~~flE~~~~~g~~YGt~~~~v~~~~~~g~~~ildi~~~~~-~~l~~~~~~p~~ifi~pps~~~L~~l~~R~----- 662 (721)
T 2xkx_A 589 DIRAHKFIEAGQYNSHLYGTSVQSVREVAEQGKHCILDVSANAV-RRLQAAHLHPIAIFIRPRSLENVLEINKRI----- 662 (721)
T ss_pred HHhcCCceEEEEECCccceeeHHHHHHHHHCCCcEEEeCCHHHH-HHHHhcccCCEEEEEeCCcHHHHHHHhccC-----
Confidence 45556666555443333321111 1123445667777422111 1121 334489999988766666655552
Q ss_pred CChHHHHHHHHhhcccchhhhcCCccccccEecccCCCchhhhhhhhheeee
Q 035513 179 RDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230 (473)
Q Consensus 179 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~ad~vI~~~~~~~~~i~~i~~~I~~ 230 (473)
+.+.+..++....+ ... .+....|++|.|+ +.+.+++++.+.|..
T Consensus 663 -t~~~~~~rl~~a~~-~e~----~~~~~fd~vi~Nd-~l~~a~~~l~~~i~~ 707 (721)
T 2xkx_A 663 -TEEQARKAFDRATK-LEQ----EFTECFSAIVEGD-SFEEIYHKVKRVIED 707 (721)
T ss_pred -CHHHHHHHHHHHHH-HHH----hccccCcEEEECc-CHHHHHHHHHHHHHh
Confidence 11223223222211 000 1134678899887 667777777766654
No 348
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=95.45 E-value=0.0091 Score=58.08 Aligned_cols=26 Identities=15% Similarity=0.199 Sum_probs=23.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.-|.|.|++|+|||++|+.+++.++
T Consensus 51 ~~~vLl~GppGtGKT~la~aia~~~~ 76 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLAKAVATEAN 76 (322)
T ss_dssp CCEEEEECSSSSCHHHHHHHHHHHHT
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHC
Confidence 45699999999999999999999886
No 349
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=95.40 E-value=0.01 Score=56.75 Aligned_cols=38 Identities=24% Similarity=0.284 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.-+.|.|++|+||||+|+.+++.++ ..+..+++.++.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~-~~~~~i~~~~~~ 87 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLAN-APFIKVEATKFT 87 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGGGGS
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhC-CCEEEEcchhcc
Confidence 34578999999999999999999986 235666665443
No 350
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.39 E-value=0.0087 Score=60.86 Aligned_cols=40 Identities=20% Similarity=0.225 Sum_probs=30.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.|.=|.+.||+|+|||++|+++|..++ ..+..++..++.
T Consensus 241 ~pprGILLyGPPGTGKTlLAkAiA~e~~-~~fi~vs~s~L~ 280 (467)
T 4b4t_H 241 DPPKGILLYGPPGTGKTLCARAVANRTD-ATFIRVIGSELV 280 (467)
T ss_dssp CCCSEEEECSCTTSSHHHHHHHHHHHHT-CEEEEEEGGGGC
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccC-CCeEEEEhHHhh
Confidence 4456789999999999999999999987 234445555554
No 351
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=95.39 E-value=0.0077 Score=67.69 Aligned_cols=45 Identities=20% Similarity=0.299 Sum_probs=34.8
Q ss_pred cceeecc-----ccc----ccccccccccCCCCCCCCC-------CEEEEEEcCCCCcHHHHHHHH
Q 035513 3 TVIELAD-----DFA----DDLSLQSASSESTTMPTKQ-------PFVIGVAGGTASGKTTVCNMI 52 (473)
Q Consensus 3 ~~i~~~~-----~~~----~~~~l~~~~~~~~~~~~~~-------~~iI~I~G~sGSGKTTla~~L 52 (473)
.+|+++| +.+ +..+++++ ++.... +.+++|+||+||||||+.+.+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~~~v~ndi-----~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i 809 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGDDFIPNDI-----LIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA 809 (1022)
T ss_dssp CCEEEEEECCCC------CCCCCCEEE-----EESCCCSCC---CCCEEEEECCTTSSHHHHHHHH
T ss_pred ceEEEEeccccEEEEEecCCceEeeee-----eeccccccccCCCCcEEEEECCCCCChHHHHHHH
Confidence 3688888 643 35688888 666554 689999999999999999998
No 352
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=95.38 E-value=0.0031 Score=69.88 Aligned_cols=42 Identities=21% Similarity=0.267 Sum_probs=35.6
Q ss_pred ceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 035513 4 VIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMI 52 (473)
Q Consensus 4 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L 52 (473)
+|+++++.. ..|+++ +.....+.+++|+|++|||||||++.|
T Consensus 647 ~L~v~~l~~--~~Lk~V-----sl~I~~GeivaI~G~nGSGKSTLl~~i 688 (993)
T 2ygr_A 647 QLTVVGARE--HNLRGI-----DVSFPLGVLTSVTGVSGSGKSTLVNDI 688 (993)
T ss_dssp EEEEEEECS--TTCCSE-----EEEEESSSEEEEECSTTSSHHHHHTTT
T ss_pred eEEEecCcc--ccccCc-----eEEECCCCEEEEEcCCCCCHHHHHHHH
Confidence 577777754 258888 888889999999999999999999985
No 353
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.38 E-value=0.0016 Score=67.68 Aligned_cols=37 Identities=38% Similarity=0.437 Sum_probs=28.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEE
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLV 64 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~i 64 (473)
..+.+.+|+|+|++||||||+.+.|...++. .+...+
T Consensus 256 ~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giiti 293 (511)
T 2oap_1 256 AIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSI 293 (511)
T ss_dssp HHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEE
Confidence 3345667999999999999999999987753 344444
No 354
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.32 E-value=0.0083 Score=54.30 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.|.||+|+||||+|..|++.+.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~ 83 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQ 83 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3589999999999999999999886
No 355
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=95.30 E-value=0.01 Score=53.95 Aligned_cols=25 Identities=20% Similarity=0.359 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.|.|++|+||||+++.+++.+.
T Consensus 46 ~~~ll~G~~G~GKT~l~~~~~~~~~ 70 (250)
T 1njg_A 46 HAYLFSGTRGVGKTSIARLLAKGLN 70 (250)
T ss_dssp SEEEEECSTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4789999999999999999998875
No 356
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.29 E-value=0.0069 Score=58.88 Aligned_cols=37 Identities=22% Similarity=0.227 Sum_probs=27.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDS 68 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~ 68 (473)
+..+.|.|++|+||||+++.++..+. ...+..++..+
T Consensus 37 ~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp CSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 34588999999999999999998773 23355555443
No 357
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=95.29 E-value=0.017 Score=49.42 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.+.+|.|++||||||+..+|.-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999997655
No 358
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.29 E-value=0.0085 Score=56.97 Aligned_cols=28 Identities=11% Similarity=0.129 Sum_probs=24.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..++.+++|.|++|||||||+..++..+
T Consensus 27 l~~G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 27 MVAGTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred ccCCCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3456799999999999999999998754
No 359
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=95.27 E-value=0.0029 Score=69.90 Aligned_cols=42 Identities=21% Similarity=0.314 Sum_probs=35.5
Q ss_pred ceeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHH
Q 035513 4 VIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMI 52 (473)
Q Consensus 4 ~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~L 52 (473)
+|+++++.. ..|+++ +.....+.+++|+|++|||||||++.|
T Consensus 629 ~L~v~~l~~--~~Lk~V-----sl~I~~Geiv~I~G~nGSGKSTLl~~l 670 (972)
T 2r6f_A 629 WLEVVGARE--HNLKNV-----SVKIPLGTFVAVTGVSGSGKSTLVNEV 670 (972)
T ss_dssp EEEEEEECS--SSCCSE-----EEEEESSSEEECCBCTTSSHHHHHTTT
T ss_pred EEEEecCcc--cccccc-----eEEEcCCCEEEEEcCCCCCHHHHHHHH
Confidence 577777754 358888 888889999999999999999999985
No 360
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.27 E-value=0.0098 Score=59.06 Aligned_cols=31 Identities=16% Similarity=0.119 Sum_probs=27.5
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.....++-.++|.|++|+||||+++.|++..
T Consensus 168 ~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 168 ASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred eeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 6677788899999999999999999998765
No 361
>2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A*
Probab=95.25 E-value=0.0052 Score=67.40 Aligned_cols=32 Identities=16% Similarity=0.286 Sum_probs=27.7
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCN 50 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~ 50 (473)
..-|+|+ +...++..+++|+|.||||||||+-
T Consensus 23 ~hNLkni-----~v~iP~~~l~viTGvSGSGKSSLaf 54 (842)
T 2vf7_A 23 QHNLKDI-----SVKVPRDALVVFTGVSGSGKSSLAF 54 (842)
T ss_dssp STTCCSE-----EEEEESSSEEEEESSTTSSHHHHHT
T ss_pred ccCCCCe-----eEEecCCCEEEEECCCCCCHHHHHH
Confidence 4457888 7788888999999999999999994
No 362
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=95.24 E-value=0.011 Score=58.55 Aligned_cols=25 Identities=16% Similarity=0.206 Sum_probs=22.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.-|.|.|++|+||||+|+.+++.++
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhC
Confidence 4588899999999999999999986
No 363
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.23 E-value=0.0089 Score=59.45 Aligned_cols=35 Identities=26% Similarity=0.304 Sum_probs=27.2
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
..|.|.|++|+||||+|+.|++.++ ..+..++...
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~-~~~~~~~~~~ 107 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLD-IPIAISDATS 107 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTT-CCEEEEEGGG
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhC-CCEEEecchh
Confidence 4588999999999999999999985 2345555433
No 364
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=95.23 E-value=0.0043 Score=66.85 Aligned_cols=31 Identities=16% Similarity=0.284 Sum_probs=28.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVC 49 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 49 (473)
...|+++ ++..+++.+++|.|++|||||||.
T Consensus 31 ~~~L~~v-----sl~i~~Ge~~~liGpNGaGKSTLl 61 (670)
T 3ux8_A 31 AHNLKNI-----DVEIPRGKLVVLTGLSGSGKSSLA 61 (670)
T ss_dssp STTCCSE-----EEEEETTSEEEEECSTTSSHHHHH
T ss_pred ccceecc-----EEEECCCCEEEEECCCCCCHHHHh
Confidence 4578999 999999999999999999999996
No 365
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.21 E-value=0.012 Score=59.31 Aligned_cols=40 Identities=15% Similarity=0.245 Sum_probs=30.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
..+.=|.+.||||+|||++|+++|..++ ..+..++..++.
T Consensus 214 ~~prGvLLyGPPGTGKTlLAkAiA~e~~-~~fi~v~~s~l~ 253 (437)
T 4b4t_I 214 KPPKGVILYGAPGTGKTLLAKAVANQTS-ATFLRIVGSELI 253 (437)
T ss_dssp CCCSEEEEESSTTTTHHHHHHHHHHHHT-CEEEEEESGGGC
T ss_pred CCCCCCceECCCCchHHHHHHHHHHHhC-CCEEEEEHHHhh
Confidence 3445699999999999999999999987 234445555554
No 366
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=95.18 E-value=0.009 Score=57.68 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+.|+|.|++|||||||.+.|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 36789999999999999999864
No 367
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=95.17 E-value=0.012 Score=58.31 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
.+.-|.|.|++|+||||+|+.+++.++ ..+..++..++.
T Consensus 116 ~~~~vLl~GppGtGKT~la~aia~~~~-~~~~~i~~~~l~ 154 (357)
T 3d8b_A 116 PPKGILLFGPPGTGKTLIGKCIASQSG-ATFFSISASSLT 154 (357)
T ss_dssp CCSEEEEESSTTSSHHHHHHHHHHHTT-CEEEEEEGGGGC
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcC-CeEEEEehHHhh
Confidence 345789999999999999999999876 234555555444
No 368
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=95.17 E-value=0.0043 Score=58.49 Aligned_cols=23 Identities=17% Similarity=0.343 Sum_probs=21.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 035513 35 IGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~ 57 (473)
|.|.|++|+||||+|+.+++.++
T Consensus 47 vll~G~~GtGKT~la~~la~~~~ 69 (268)
T 2r62_A 47 VLLVGPPGTGKTLLAKAVAGEAH 69 (268)
T ss_dssp CCCBCSSCSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCcHHHHHHHHHHHhC
Confidence 78999999999999999999876
No 369
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=95.16 E-value=0.01 Score=61.16 Aligned_cols=37 Identities=14% Similarity=0.259 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+.+.+|++.|..||||+|..+.|.+.+++.++.++..
T Consensus 41 ~~~vlIvfEG~D~AGKg~~Ik~l~~~l~prg~~V~a~ 77 (500)
T 3czp_A 41 RFPVIILINGIEGAGKGETVKLLNEWMDPRLIEVQSF 77 (500)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CCCEEEEEeCcCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 5689999999999999999999999999888888865
No 370
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=95.15 E-value=0.017 Score=51.03 Aligned_cols=28 Identities=14% Similarity=0.288 Sum_probs=24.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.......|+|.|.+|+|||||.+.|...
T Consensus 3 ~~~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 3 EKKSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CCCSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCcceEEEEECCCCCCHHHHHHHHHhC
Confidence 3456788999999999999999999864
No 371
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.15 E-value=0.0087 Score=65.51 Aligned_cols=36 Identities=14% Similarity=0.131 Sum_probs=30.4
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
...++++ ++. +.+.+++|+||+||||||+.+.++..
T Consensus 595 ~~vlndi-----sl~-~~g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 595 PFIANPL-----NLS-PQRRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CCCCEEE-----EEC-SSSCEEEEECCTTSSHHHHHHHHHHH
T ss_pred ceeeecc-----ccc-CCCcEEEEECCCCCChHHHHHHHHHH
Confidence 4577777 666 66789999999999999999999864
No 372
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=95.14 E-value=0.012 Score=52.95 Aligned_cols=22 Identities=23% Similarity=0.336 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035513 35 IGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l 56 (473)
+.|.|++|+||||+++.+++.+
T Consensus 41 ~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 41 LLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999876
No 373
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.07 E-value=0.008 Score=66.61 Aligned_cols=36 Identities=11% Similarity=0.194 Sum_probs=31.4
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
..+++++ ++....+.+++|+||+||||||+.+.++.
T Consensus 660 ~~V~ndv-----sl~~~~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 660 QYVPNNT-----DLSEDSERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SSCCEEE-----EECTTSCCEEEEESCCCHHHHHHHHHHHH
T ss_pred ceecccc-----cccCCCCeEEEEECCCCCchHHHHHHHHH
Confidence 5677888 88888888999999999999999998864
No 374
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=95.06 E-value=0.013 Score=52.99 Aligned_cols=27 Identities=26% Similarity=0.325 Sum_probs=23.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
..+...|+|.|++||||||+.+.|...
T Consensus 9 ~~~~~~i~~~G~~g~GKTsl~~~l~~~ 35 (218)
T 1nrj_B 9 KSYQPSIIIAGPQNSGKTSLLTLLTTD 35 (218)
T ss_dssp -CCCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 445678999999999999999999864
No 375
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.04 E-value=0.015 Score=57.60 Aligned_cols=25 Identities=20% Similarity=0.275 Sum_probs=23.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+.|.|++|+||||+++.+++.+..
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~~~ 70 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELYKD 70 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhh
Confidence 7999999999999999999998854
No 376
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=95.03 E-value=0.016 Score=50.23 Aligned_cols=26 Identities=31% Similarity=0.475 Sum_probs=22.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.++...|+|.|.+|||||||.+.|..
T Consensus 5 ~~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 5 VERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 45667899999999999999999964
No 377
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=95.02 E-value=0.0074 Score=64.03 Aligned_cols=25 Identities=24% Similarity=0.474 Sum_probs=22.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.+++|.|++|||||||.+.|+..+.
T Consensus 379 Eiv~iiG~NGsGKSTLlk~l~Gl~~ 403 (608)
T 3j16_B 379 EILVMMGENGTGKTTLIKLLAGALK 403 (608)
T ss_dssp CEEEEESCTTSSHHHHHHHHHTSSC
T ss_pred eEEEEECCCCCcHHHHHHHHhcCCC
Confidence 6799999999999999999998764
No 378
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.01 E-value=0.016 Score=60.79 Aligned_cols=37 Identities=22% Similarity=0.335 Sum_probs=29.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
++..++|.|++|+||||+++.|+..++. .+..++.+.
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~-~~~~i~~~~ 143 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGR-KFVRISLGG 143 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTC-EEEEECCCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCC-CeEEEEecc
Confidence 4668999999999999999999998862 244455443
No 379
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.00 E-value=0.024 Score=51.59 Aligned_cols=37 Identities=22% Similarity=0.382 Sum_probs=28.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC-CCCEEEEecC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR-DQRVVLVNQD 67 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~-~~~~~~is~D 67 (473)
+...|+|.|.+||||||+.+.|..... ......+..|
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~~~~~~~~i~~d 74 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIACIAGD 74 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHTTTCCEEEEEEE
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEECC
Confidence 467899999999999999999987753 2235555543
No 380
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.98 E-value=0.026 Score=57.94 Aligned_cols=36 Identities=17% Similarity=0.278 Sum_probs=28.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCCC
Q 035513 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~~ 71 (473)
|.|.|++|+||||+++.++...+ ..+..++..++..
T Consensus 52 vLL~GppGtGKT~Laraia~~~~-~~f~~is~~~~~~ 87 (476)
T 2ce7_A 52 ILLVGPPGTGKTLLARAVAGEAN-VPFFHISGSDFVE 87 (476)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHT-CCEEEEEGGGTTT
T ss_pred EEEECCCCCCHHHHHHHHHHHcC-CCeeeCCHHHHHH
Confidence 88999999999999999999876 2355666655553
No 381
>3czp_A Putative polyphosphate kinase 2; PPK2, MCSG, PSI-2, structural protein structure initiative, midwest center for structural genomics; HET: MSE; 2.00A {Pseudomonas aeruginosa PAO1}
Probab=94.98 E-value=0.041 Score=56.71 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=33.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+.+.+|++.|..||||+|..+.|.+.+++.++.++..
T Consensus 298 ~~~vlIvfEG~DaAGKg~~Ik~l~~~ldprg~~V~~~ 334 (500)
T 3czp_A 298 QHSLVAVFEGNDAAGKGGAIRRVTDALDPRQYHIVPI 334 (500)
T ss_dssp GCEEEEEEEESTTSCHHHHHHHHHTTSCGGGCEEEEC
T ss_pred CCCEEEEEeccCCCCHHHHHHHHHHhcCccCCeEEEe
Confidence 4678999999999999999999999998888888764
No 382
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.96 E-value=0.016 Score=60.38 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=26.5
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
+..+.|.|++|+||||+|+.+++.++ +.++..
T Consensus 77 ~~~lLL~GppGtGKTtla~~la~~l~---~~~i~i 108 (516)
T 1sxj_A 77 FRAAMLYGPPGIGKTTAAHLVAQELG---YDILEQ 108 (516)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHTT---CEEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcC---CCEEEE
Confidence 35789999999999999999999986 455443
No 383
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=94.93 E-value=0.014 Score=58.86 Aligned_cols=24 Identities=29% Similarity=0.382 Sum_probs=21.9
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+++|.|++||||||+.+.|...+
T Consensus 70 ~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 70 LNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTCC
T ss_pred eEEEEECCCCCcHHHHHHHHhCCC
Confidence 499999999999999999998754
No 384
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=94.93 E-value=0.012 Score=55.28 Aligned_cols=37 Identities=11% Similarity=0.126 Sum_probs=27.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDSF 69 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~~ 69 (473)
.-|.|.|++|+|||++|+.+++.... ..+..+++..+
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~ 68 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAAL 68 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGS
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCC
Confidence 34789999999999999999987653 23555655443
No 385
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.92 E-value=0.014 Score=51.99 Aligned_cols=25 Identities=24% Similarity=0.135 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.++.++|++||||||++-.++..+
T Consensus 3 g~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHH
Confidence 4588999999999999997666654
No 386
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=94.92 E-value=0.015 Score=50.27 Aligned_cols=27 Identities=15% Similarity=0.205 Sum_probs=23.0
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
......|+|.|.+|||||||.+.|...
T Consensus 12 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 12 YSYIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cccceEEEEECCCCCCHHHHHHHHHcC
Confidence 344678999999999999999999753
No 387
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=94.89 E-value=0.016 Score=50.08 Aligned_cols=23 Identities=26% Similarity=0.533 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|++|+|||||.+.|..
T Consensus 3 ~~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 3 SYEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHC
T ss_pred ccEEEEECCCCCCHHHHHHHHhC
Confidence 36799999999999999999974
No 388
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.88 E-value=0.011 Score=61.86 Aligned_cols=30 Identities=20% Similarity=0.214 Sum_probs=25.6
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
...++.+++|.|++|||||||++.++....
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~ 306 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENAC 306 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHH
Confidence 345667999999999999999999987654
No 389
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.88 E-value=0.015 Score=63.84 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.4
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
....+..|+|.|++||||||+++.|+..++
T Consensus 234 ~i~~~~~vLL~Gp~GtGKTtLarala~~l~ 263 (806)
T 1ypw_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEECSCTTSSHHHHHHHHHHTTT
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcC
Confidence 455667899999999999999999999876
No 390
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=94.88 E-value=0.013 Score=56.51 Aligned_cols=25 Identities=20% Similarity=0.341 Sum_probs=22.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+++|.|+||||||||.+.|. .+.
T Consensus 165 G~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 165 GFICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp TCEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred CcEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 4689999999999999999998 543
No 391
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=94.83 E-value=0.019 Score=57.43 Aligned_cols=38 Identities=13% Similarity=0.150 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~~ 70 (473)
+.-|.|.|++|+|||++|+.++..++ ..+..++..++.
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~-~~~~~v~~~~l~ 185 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESN-ATFFNISAASLT 185 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTT-CEEEEECSCCC-
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhc-CcEEEeeHHHhh
Confidence 35789999999999999999999876 224445554443
No 392
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=94.81 E-value=0.016 Score=50.38 Aligned_cols=29 Identities=24% Similarity=0.165 Sum_probs=22.1
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
|...+...|+|.|.+|+||||+.+.+...
T Consensus 3 ~~~~~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 3 MSASRFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp ----CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCCceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34455678999999999999999998753
No 393
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.81 E-value=0.023 Score=48.77 Aligned_cols=26 Identities=23% Similarity=0.240 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+++...|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 4 MTREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp CSSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCCccEEEEECCCCCCHHHHHHHHhc
Confidence 34568899999999999999999964
No 394
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=94.79 E-value=0.02 Score=50.29 Aligned_cols=24 Identities=25% Similarity=0.531 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...|+|.|.+|+|||||.+.|..
T Consensus 6 ~~~~i~lvG~~gvGKStL~~~l~~ 29 (188)
T 2wjg_A 6 KSYEIALIGNPNVGKSTIFNALTG 29 (188)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999975
No 395
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=94.78 E-value=0.017 Score=50.33 Aligned_cols=24 Identities=21% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+..|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~ki~ivG~~g~GKStLl~~l~~ 26 (172)
T 2gj8_A 3 HGMKVVIAGRPNAGKSSLLNALAG 26 (172)
T ss_dssp -CEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 457899999999999999999975
No 396
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=94.77 E-value=0.014 Score=56.86 Aligned_cols=34 Identities=24% Similarity=0.236 Sum_probs=26.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D 67 (473)
..|.|.|++|+||||+|+.+++.++. .+..++..
T Consensus 56 ~~vll~G~~GtGKT~la~~ia~~~~~-~~~~~~~~ 89 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLANIISYEMSA-NIKTTAAP 89 (338)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHTTC-CEEEEEGG
T ss_pred CeEEEECcCCCCHHHHHHHHHHHhCC-CeEEecch
Confidence 35899999999999999999998762 24455443
No 397
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=94.77 E-value=0.087 Score=52.15 Aligned_cols=40 Identities=15% Similarity=0.279 Sum_probs=31.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHh--CCCCEEEEecCCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRL--RDQRVVLVNQDSFY 70 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l--~~~~~~~is~D~~~ 70 (473)
.+.++.|.|++||||||+|..++... .+..+.+++++.-.
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~ 114 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHAL 114 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCCh
Confidence 45689999999999999999988654 23458889887543
No 398
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.76 E-value=0.011 Score=65.62 Aligned_cols=35 Identities=11% Similarity=0.095 Sum_probs=30.2
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMII 53 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La 53 (473)
..+++++ ++....+.+++|+||+||||||+.+.++
T Consensus 649 ~~v~ndi-----sl~~~~g~i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 649 AFIPNDV-----YFEKDKQMFHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp CCCCEEE-----EEETTTBCEEEEECCTTSSHHHHHHHHH
T ss_pred eeecccc-----eeecCCCeEEEEECCCCCCHHHHHHHHH
Confidence 4577777 7777778899999999999999999884
No 399
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=94.76 E-value=0.018 Score=50.00 Aligned_cols=26 Identities=23% Similarity=0.482 Sum_probs=22.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
..+...|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~~ki~~vG~~~vGKTsli~~l~~ 29 (178)
T 2iwr_A 4 SIPELRLGVLGDARSGKSSLIHRFLT 29 (178)
T ss_dssp CCCEEEEEEECCGGGCHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34567899999999999999999975
No 400
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.73 E-value=0.022 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.434 Sum_probs=20.7
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHH
Q 035513 33 FVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~ 55 (473)
+.|+|.|.+||||||+.+.|...
T Consensus 2 ~ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 2 HKVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999753
No 401
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=94.72 E-value=0.036 Score=54.45 Aligned_cols=40 Identities=10% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHh--------CCCCEEEEecCC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRL--------RDQRVVLVNQDS 68 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l--------~~~~~~~is~D~ 68 (473)
...+.++.|.|++||||||++..++... .+.++.++++..
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4567899999999999999999998762 123466777654
No 402
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=94.72 E-value=0.019 Score=56.64 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=23.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..+..+.|.|++|+||||+++.+++.+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999877
No 403
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.71 E-value=0.02 Score=49.71 Aligned_cols=27 Identities=19% Similarity=0.336 Sum_probs=22.1
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.++...|+|.|.+|||||||.+.|...
T Consensus 5 ~~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 5 KKNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCceEEEEEECCCCCCHHHHHHHHHhC
Confidence 345678999999999999999998753
No 404
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=94.71 E-value=0.022 Score=49.38 Aligned_cols=26 Identities=23% Similarity=0.374 Sum_probs=22.5
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+...|+|.|.+|||||||.+.|...
T Consensus 7 ~~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 7 SETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp SCEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 44578999999999999999999753
No 405
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=94.70 E-value=0.015 Score=57.49 Aligned_cols=25 Identities=20% Similarity=0.262 Sum_probs=21.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.+++|.|+||||||||.+.|+...
T Consensus 215 G~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 215 GRISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CCEEEEECCCCccHHHHHHHHhccc
Confidence 4589999999999999999998543
No 406
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.69 E-value=0.018 Score=52.92 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=27.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEE
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLV 64 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~i 64 (473)
.++.++.++|++||||||++-.++.++. +..+.++
T Consensus 10 ~~G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~ 46 (223)
T 2b8t_A 10 KIGWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVF 46 (223)
T ss_dssp -CCEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCcEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEE
Confidence 3467999999999999999998887764 2345555
No 407
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=94.66 E-value=0.017 Score=57.02 Aligned_cols=37 Identities=16% Similarity=0.201 Sum_probs=28.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDS 68 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~ 68 (473)
+..+.|.|++|+||||+|+.+++.++. ..+..++...
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 357999999999999999999999863 2344555433
No 408
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.66 E-value=0.021 Score=48.85 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
....|+|.|.+|||||||.+.|..
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~ 27 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCK 27 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999975
No 409
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=94.65 E-value=0.024 Score=49.94 Aligned_cols=27 Identities=19% Similarity=0.413 Sum_probs=22.7
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...+...|+|.|.+|+|||||.+.+..
T Consensus 16 ~~~~~~ki~ivG~~~vGKSsL~~~~~~ 42 (184)
T 3ihw_A 16 FQGPELKVGIVGNLSSGKSALVHRYLT 42 (184)
T ss_dssp CCCCEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCCeeEEEEECCCCCCHHHHHHHHhc
Confidence 344557899999999999999988865
No 410
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=94.63 E-value=0.018 Score=50.66 Aligned_cols=25 Identities=20% Similarity=0.376 Sum_probs=21.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
+...|+|.|.+|||||||.+.|...
T Consensus 20 ~~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 20 TEYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEECcCCCCHHHHHHHHHcC
Confidence 3478999999999999999999753
No 411
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=94.63 E-value=0.0058 Score=51.94 Aligned_cols=23 Identities=17% Similarity=0.059 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 035513 34 VIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l 56 (473)
-|.|.|++|+|||++|+.++...
T Consensus 29 ~vll~G~~GtGKt~lA~~i~~~~ 51 (143)
T 3co5_A 29 PVFLTGEAGSPFETVARYFHKNG 51 (143)
T ss_dssp CEEEEEETTCCHHHHHGGGCCTT
T ss_pred cEEEECCCCccHHHHHHHHHHhC
Confidence 37899999999999999997654
No 412
>2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans}
Probab=94.62 E-value=0.016 Score=57.36 Aligned_cols=30 Identities=27% Similarity=0.368 Sum_probs=24.7
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.....+ +.+|.|++||||||+.+.|.-..
T Consensus 21 ~~~~~~g-~~~i~G~nG~GKttll~ai~~~~ 50 (359)
T 2o5v_A 21 TLNFPEG-VTGIYGENGAGKTNLLEAAYLAL 50 (359)
T ss_dssp EEECCSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEcCC-eEEEECCCCCChhHHHHHHHHhc
Confidence 5555555 89999999999999999997543
No 413
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=94.60 E-value=0.02 Score=51.63 Aligned_cols=24 Identities=21% Similarity=0.241 Sum_probs=20.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
++++.|+|++|||||++|..+...
T Consensus 5 ~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 5 AEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHH
T ss_pred eeEEEEEeCCCCCHHHHHHHHHHH
Confidence 458899999999999999886443
No 414
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.58 E-value=0.014 Score=63.55 Aligned_cols=34 Identities=15% Similarity=0.167 Sum_probs=28.5
Q ss_pred cccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 14 ~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
..+++++ ++. +.+++|+||+||||||+.+.++..
T Consensus 566 ~~vl~di-----sl~---g~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 566 EFVPNDL-----EMA---HELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CCCCEEE-----EES---SCEEEEESCSSSSHHHHHHHHHHH
T ss_pred ceEeeec-----cCC---CcEEEEECCCCCChHHHHHHHHhh
Confidence 4567777 555 678999999999999999999865
No 415
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=94.58 E-value=0.028 Score=54.34 Aligned_cols=34 Identities=24% Similarity=0.293 Sum_probs=27.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS 68 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~ 68 (473)
.+.-|+|.|+||+||||+|..|.++ +..+++-|.
T Consensus 143 ~g~~vl~~G~sG~GKSt~a~~l~~~----g~~lv~dD~ 176 (314)
T 1ko7_A 143 YGVGVLITGDSGIGKSETALELIKR----GHRLVADDN 176 (314)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHT----TCEEEESSE
T ss_pred CCEEEEEEeCCCCCHHHHHHHHHhc----CCceecCCe
Confidence 4578999999999999999999875 366775554
No 416
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=94.56 E-value=0.024 Score=50.81 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEE
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLV 64 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~i 64 (473)
.++.++.++|++||||||.+-.++.++. +..+.++
T Consensus 6 ~~g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 6 DHGWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 3468999999999999999999988773 3445555
No 417
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=94.55 E-value=0.0087 Score=66.26 Aligned_cols=38 Identities=18% Similarity=0.282 Sum_probs=30.8
Q ss_pred eeecccccccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHH
Q 035513 5 IELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVC 49 (473)
Q Consensus 5 i~~~~~~~~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla 49 (473)
|.+++- +..-|+|+ +...++..+|+|+|.|||||||||
T Consensus 4 i~i~ga--r~hNLkni-----~~~ip~~~l~v~tG~SGSGKSsLa 41 (916)
T 3pih_A 4 IVVKGA--RVHNLKNI-----TVRIPKNRLVVITGVSGSGKSSLA 41 (916)
T ss_dssp EEEESB--CSTTCCSB-----CCEEETTSEEEEEESTTSSSHHHH
T ss_pred EEEeCc--cccccCcc-----eeccCCCcEEEEECCCCCcHHHHH
Confidence 444433 33458899 888899999999999999999998
No 418
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.55 E-value=0.019 Score=56.22 Aligned_cols=23 Identities=17% Similarity=0.239 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 035513 35 IGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~ 57 (473)
+++.|++|+||||+++.+++.+.
T Consensus 49 ~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 49 LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp EEEECSSSSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 89999999999999999999874
No 419
>3fwy_A Light-independent protochlorophyllide reductase I ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2}
Probab=94.53 E-value=0.036 Score=53.71 Aligned_cols=44 Identities=20% Similarity=0.256 Sum_probs=32.8
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCC
Q 035513 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDS 68 (473)
Q Consensus 25 ~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~ 68 (473)
+.+..+..++|+|+|.-|.||||++--|+..|- +..+.+|++|-
T Consensus 41 ~~~~i~~aKVIAIaGKGGVGKTTtavNLA~aLA~~GkkVllID~Dp 86 (314)
T 3fwy_A 41 EADKITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 86 (314)
T ss_dssp ------CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred cccCCCCceEEEEECCCccCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 455567789999999999999999999987764 35688899984
No 420
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.52 E-value=0.022 Score=48.39 Aligned_cols=24 Identities=21% Similarity=0.391 Sum_probs=20.9
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
...|++.|.+||||||+.+.|...
T Consensus 3 ~~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 3 EYKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHhC
Confidence 357999999999999999999753
No 421
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.50 E-value=0.024 Score=48.20 Aligned_cols=23 Identities=17% Similarity=0.377 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+|||||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~ 25 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999998875
No 422
>3rhf_A Putative polyphosphate kinase 2 family protein; PSI-biology, MCSG, structural genomics, midwest center for S genomics; HET: PGE FLC PG4; 2.45A {Arthrobacter aurescens}
Probab=94.48 E-value=0.059 Score=51.05 Aligned_cols=37 Identities=14% Similarity=0.229 Sum_probs=33.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
..+.+|++.|..||||++..+.|.+.+++.++.+++.
T Consensus 73 ~~~vlIvfEG~DaAGKgg~Ik~l~~~ldPRg~~V~a~ 109 (289)
T 3rhf_A 73 PKRLLLILQAMDTAGKGGIVSHVVGAMDPQGVQLTAF 109 (289)
T ss_dssp CCEEEEEEEECTTSSHHHHHHHHHHHSCGGGEEEEEC
T ss_pred CCcEEEEEECCCCCChHHHHHHHHHhcCcCceEEEEC
Confidence 3578999999999999999999999999888988865
No 423
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=94.47 E-value=0.029 Score=49.52 Aligned_cols=29 Identities=17% Similarity=0.126 Sum_probs=24.0
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.........|+|.|.+|+|||||.+.|..
T Consensus 15 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 43 (191)
T 2a5j_A 15 VPRGSYLFKYIIIGDTGVGKSCLLLQFTD 43 (191)
T ss_dssp CCTTCEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred ccccCcceEEEEECcCCCCHHHHHHHHhc
Confidence 33445567899999999999999999975
No 424
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.46 E-value=0.017 Score=56.56 Aligned_cols=22 Identities=23% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 035513 35 IGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l 56 (473)
+.|.|++|+||||+++.|++.+
T Consensus 39 ~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 39 LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp EEEECSTTSSHHHHHHTHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999965
No 425
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=94.45 E-value=0.022 Score=50.31 Aligned_cols=27 Identities=30% Similarity=0.418 Sum_probs=22.9
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...+...|+|.|.+|||||||.+.|..
T Consensus 19 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 1svi_A 19 PEGGLPEIALAGRSNVGKSSFINSLIN 45 (195)
T ss_dssp CCSCCCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHhC
Confidence 344567899999999999999999864
No 426
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.43 E-value=0.028 Score=49.86 Aligned_cols=26 Identities=12% Similarity=0.294 Sum_probs=21.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
..+...|+|.|.+|+|||||.+.|..
T Consensus 25 ~~~~~ki~v~G~~~vGKSsli~~l~~ 50 (196)
T 2atv_A 25 KSAEVKLAIFGRAGVGKSALVVRFLT 50 (196)
T ss_dssp --CCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHh
Confidence 34568899999999999999999975
No 427
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.43 E-value=0.028 Score=49.44 Aligned_cols=26 Identities=15% Similarity=0.267 Sum_probs=21.9
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
......|+|.|.+|||||||.+.|..
T Consensus 20 ~~~~~~i~v~G~~~~GKSsli~~l~~ 45 (195)
T 3pqc_A 20 PPLKGEVAFVGRSNVGKSSLLNALFN 45 (195)
T ss_dssp CCTTCEEEEEEBTTSSHHHHHHHHHT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHc
Confidence 34456899999999999999999864
No 428
>1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12
Probab=94.43 E-value=0.0043 Score=57.36 Aligned_cols=43 Identities=19% Similarity=0.264 Sum_probs=31.5
Q ss_pred ceeeccccc-ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 4 VIELADDFA-DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 4 ~i~~~~~~~-~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
.|+++|+.+ ... ++ +... .+++|.|++||||||+.+.|+..+.
T Consensus 9 ~l~l~~~~~~~~~---~~-----~~~~---~~~~i~GpnGsGKSTll~~i~g~~~ 52 (227)
T 1qhl_A 9 SLTLINWNGFFAR---TF-----DLDE---LVTTLSGGNGAGKSTTMAAFVTALI 52 (227)
T ss_dssp EEEEEEETTEEEE---EE-----CHHH---HHHHHHSCCSHHHHHHHHHHHHHHS
T ss_pred EEEEEeeecccCC---EE-----EEcC---cEEEEECCCCCCHHHHHHHHhcccc
Confidence 578888855 111 34 2221 4689999999999999999998875
No 429
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.43 E-value=0.024 Score=49.95 Aligned_cols=26 Identities=27% Similarity=0.336 Sum_probs=22.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+...|+|.|.+||||||+.+.|...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 45578999999999999999999764
No 430
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.42 E-value=0.024 Score=56.04 Aligned_cols=26 Identities=31% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
.+..+.|.|++|+||||+++.+++.+
T Consensus 44 ~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 44 VKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 35589999999999999999999876
No 431
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=94.42 E-value=0.04 Score=52.98 Aligned_cols=41 Identities=22% Similarity=0.295 Sum_probs=32.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDS 68 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~ 68 (473)
..+++++|+|+|..|+||||++-.|+..+. +..+.++++|-
T Consensus 37 ~~~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD~D~ 79 (307)
T 3end_A 37 KITGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIGCDP 79 (307)
T ss_dssp ---CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEESS
T ss_pred ccCCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 344678899999999999999999987764 35688999985
No 432
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=94.41 E-value=0.018 Score=56.66 Aligned_cols=27 Identities=37% Similarity=0.555 Sum_probs=23.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..+..+.|.|++|+||||+++.+++.+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 345679999999999999999999877
No 433
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.40 E-value=0.017 Score=57.03 Aligned_cols=21 Identities=43% Similarity=0.735 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 035513 34 VIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~ 54 (473)
.|+|.|.+|||||||.+.|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999986
No 434
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=94.39 E-value=0.028 Score=54.27 Aligned_cols=36 Identities=19% Similarity=0.219 Sum_probs=28.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
..|.|.|++|+||||+|+.+++.++ ..+..++...+
T Consensus 39 ~~vll~G~~GtGKT~la~~i~~~~~-~~~~~~~~~~~ 74 (324)
T 1hqc_A 39 EHLLLFGPPGLGKTTLAHVIAHELG-VNLRVTSGPAI 74 (324)
T ss_dssp CCCEEECCTTCCCHHHHHHHHHHHT-CCEEEECTTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHhC-CCEEEEecccc
Confidence 4588999999999999999999886 23555555443
No 435
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.37 E-value=0.028 Score=54.40 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=25.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEe
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is 65 (473)
+..+.+.|++|+||||+++.+++.++ ..++.
T Consensus 48 ~~~~L~~G~~G~GKT~la~~la~~l~---~~~~~ 78 (324)
T 3u61_B 48 PHIILHSPSPGTGKTTVAKALCHDVN---ADMMF 78 (324)
T ss_dssp CSEEEECSSTTSSHHHHHHHHHHHTT---EEEEE
T ss_pred CeEEEeeCcCCCCHHHHHHHHHHHhC---CCEEE
Confidence 45788899999999999999999986 44443
No 436
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=94.37 E-value=0.028 Score=50.09 Aligned_cols=29 Identities=21% Similarity=0.399 Sum_probs=21.5
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...++...|+|.|.+|+|||||.+.|..
T Consensus 22 ~~~~~~~~ki~v~G~~~~GKSsli~~l~~ 50 (199)
T 2p5s_A 22 SFSSQKAYKIVLAGDAAVGKSSFLMRLCK 50 (199)
T ss_dssp ------CEEEEEESSTTSSHHHHHHHHHH
T ss_pred CcCcCCCeEEEEECcCCCCHHHHHHHHHh
Confidence 44455678999999999999999999975
No 437
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=94.36 E-value=0.038 Score=54.45 Aligned_cols=39 Identities=23% Similarity=0.301 Sum_probs=30.8
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSF 69 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~ 69 (473)
++.++.|.|++||||||++..++.... +..+.+++.+.-
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 567899999999999999999986542 335788888653
No 438
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=94.32 E-value=0.028 Score=47.90 Aligned_cols=23 Identities=13% Similarity=0.182 Sum_probs=20.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+|||||||.+.|..
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~ 26 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eEEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999999975
No 439
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=94.32 E-value=0.027 Score=49.72 Aligned_cols=26 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
......|+|.|.+|+|||||.+.|..
T Consensus 22 ~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (193)
T 2oil_A 22 YNFVFKVVLIGESGVGKTNLLSRFTR 47 (193)
T ss_dssp CSEEEEEEEESSTTSSHHHHHHHHHH
T ss_pred cCcceEEEEECcCCCCHHHHHHHHhc
Confidence 34457899999999999999999875
No 440
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=94.31 E-value=0.027 Score=57.44 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=23.0
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.|.|++|+||||+|+.|++.++
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~ 75 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYAN 75 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhC
Confidence 4689999999999999999999886
No 441
>2ygr_A Uvrabc system protein A; hydrolase, nucleotide excision repair; 3.40A {Mycobacterium tuberculosis} PDB: 3zqj_A
Probab=94.31 E-value=0.0089 Score=66.28 Aligned_cols=33 Identities=21% Similarity=0.300 Sum_probs=28.2
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHH
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCN 50 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~ 50 (473)
...-|+|| +...++..+|+|+|.|||||||||=
T Consensus 32 r~hNLkni-----~v~iP~~~lvv~tG~SGSGKSSLaf 64 (993)
T 2ygr_A 32 REHNLRSV-----DLDLPRDALIVFTGLSGSGKSSLAF 64 (993)
T ss_dssp CSSSCCSE-----EEEEESSSEEEEEESTTSSHHHHHT
T ss_pred cccccCce-----eeeccCCCEEEEECCCCCcHHHHHH
Confidence 34467888 7888888999999999999999984
No 442
>2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A
Probab=94.30 E-value=0.009 Score=66.03 Aligned_cols=33 Identities=15% Similarity=0.233 Sum_probs=28.0
Q ss_pred ccccccccccCCCCCCCCCCEEEEEEcCCCCcHHHHHH
Q 035513 13 DDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCN 50 (473)
Q Consensus 13 ~~~~l~~~~~~~~~~~~~~~~iI~I~G~sGSGKTTla~ 50 (473)
...-|+|| +...++..+|+|+|.|||||||||=
T Consensus 30 r~hNLkni-----~v~iP~~~lvv~tG~SGSGKSSLaf 62 (972)
T 2r6f_A 30 RAHNLKNI-----DVEIPRGKLVVLTGLSGSGKSSLAF 62 (972)
T ss_dssp CSSSCCSE-----EEEEETTSEEEEEESTTSSHHHHHT
T ss_pred ccccCCce-----eeeccCCcEEEEECCCCCCHHHHHH
Confidence 34467888 7788888999999999999999984
No 443
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=94.29 E-value=0.031 Score=48.35 Aligned_cols=25 Identities=32% Similarity=0.380 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+...|+|.|.+|||||||.+.|..
T Consensus 4 ~~~~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 4 MRQLKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp CCEEEEEEECCTTSSHHHHHHHHHG
T ss_pred CceEEEEEECcCCCCHHHHHHHHHh
Confidence 3457899999999999999999874
No 444
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=94.29 E-value=0.02 Score=49.94 Aligned_cols=25 Identities=16% Similarity=0.276 Sum_probs=21.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+...|+|.|.+|+|||||.+.|..
T Consensus 4 ~~~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 4 SKSRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CceEEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999999874
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=94.28 E-value=0.022 Score=54.92 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+++|.|+|||||||+.+.|+....
T Consensus 169 geiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 169 GKISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SSEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CCeEEEECCCCCcHHHHHHHhccccc
Confidence 46899999999999999999986543
No 446
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.27 E-value=0.026 Score=61.58 Aligned_cols=30 Identities=23% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+.|.=|.+.||+|+|||++|+.++..++
T Consensus 234 g~~~p~GILL~GPPGTGKT~LAraiA~elg 263 (806)
T 3cf2_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETG 263 (806)
T ss_dssp CCCCCCEEEEECCTTSCHHHHHHHHHTTTT
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhC
Confidence 445567799999999999999999999886
No 447
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.25 E-value=0.026 Score=50.39 Aligned_cols=29 Identities=21% Similarity=0.296 Sum_probs=22.5
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
+...+...|+|.|.+|+|||||.+.|...
T Consensus 19 ~~~~~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 19 MPLVRYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp ----CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCCCCcEEEEEECCCCcCHHHHHHHHHhC
Confidence 34456688999999999999999999753
No 448
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=94.24 E-value=0.025 Score=57.90 Aligned_cols=39 Identities=21% Similarity=0.228 Sum_probs=29.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhCC-CCEEEEecCCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLRD-QRVVLVNQDSFY 70 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~~-~~~~~is~D~~~ 70 (473)
+.-+.+.||+|+||||+|+.+++.++. ..+..++..+++
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~ 102 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVY 102 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGC
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHH
Confidence 346889999999999999999999862 335555554443
No 449
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=94.23 E-value=0.026 Score=48.87 Aligned_cols=24 Identities=21% Similarity=0.379 Sum_probs=21.3
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
....|+|.|.+|||||||.+.|..
T Consensus 6 ~~~~i~v~G~~~~GKSsli~~l~~ 29 (177)
T 1wms_A 6 SLFKVILLGDGGVGKSSLMNRYVT 29 (177)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceeEEEEECCCCCCHHHHHHHHHc
Confidence 357899999999999999999975
No 450
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=94.22 E-value=0.024 Score=49.02 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+|||||||.+.|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36899999999999999999974
No 451
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=94.22 E-value=0.027 Score=48.31 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
....|+|.|.+|+|||||.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3578999999999999999999753
No 452
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.19 E-value=0.029 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.388 Sum_probs=20.6
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+||||||+.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999864
No 453
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=94.18 E-value=0.024 Score=50.11 Aligned_cols=26 Identities=23% Similarity=0.125 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
++...|+|.|.+|+|||||.+.|...
T Consensus 16 ~~~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 16 ALMLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHhcC
Confidence 34578999999999999999999753
No 454
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=94.18 E-value=0.03 Score=49.04 Aligned_cols=25 Identities=20% Similarity=0.155 Sum_probs=22.0
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.....|+|.|.+|+|||||.+.|..
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~ 33 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTD 33 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999999975
No 455
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=94.16 E-value=0.028 Score=49.82 Aligned_cols=28 Identities=25% Similarity=0.207 Sum_probs=20.1
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
++..+. ..|+|.|.+|+||||+.+.|..
T Consensus 18 ~~~~~~-~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 18 GLWNKH-GKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp -------CEEEEEESTTSSHHHHHHHHHH
T ss_pred hccCCc-cEEEEECCCCCCHHHHHHHHhc
Confidence 444433 4789999999999999999975
No 456
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=94.16 E-value=0.031 Score=48.13 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=21.0
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
....|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 357899999999999999998863
No 457
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=94.15 E-value=0.031 Score=47.63 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+|||||||.+.|..
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~ 25 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHc
Confidence 46799999999999999999975
No 458
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.14 E-value=0.2 Score=54.56 Aligned_cols=73 Identities=10% Similarity=0.159 Sum_probs=44.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCCCCCCCH-------HH-HhhccCccCCCCccccHHHHHHHHHH
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSFYHSLTD-------EK-LQNLHDYNFDHPDAFDTELLLSDMEK 103 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~~~~~~~-------~~-~~~~~~~~f~~~~~~d~~~l~~~l~~ 103 (473)
.+.+.|++|+|||++|+.|++.+. +..+..+++..+...... .- ....+-..++..+....+.....+..
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~~l~~~~~~~~~~vl~lDEi~~~~~~~~~~Ll~~ 602 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGGQLTEKVRRKPYSVVLLDAIEKAHPDVFNILLQV 602 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC---CHHHHHHCSSSEEEEECGGGSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccchhhHHHHhCCCeEEEEeCccccCHHHHHHHHHH
Confidence 699999999999999999999873 245777887666543221 11 11112233455555555555444444
Q ss_pred hhc
Q 035513 104 LKH 106 (473)
Q Consensus 104 l~~ 106 (473)
+..
T Consensus 603 le~ 605 (758)
T 3pxi_A 603 LED 605 (758)
T ss_dssp HHH
T ss_pred hcc
Confidence 444
No 459
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=94.12 E-value=0.024 Score=49.84 Aligned_cols=22 Identities=32% Similarity=0.528 Sum_probs=19.8
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 035513 33 FVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~ 54 (473)
..|+|.|++|+|||||.+.|..
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999864
No 460
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.11 E-value=0.027 Score=54.99 Aligned_cols=23 Identities=22% Similarity=0.248 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC
Q 035513 35 IGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 35 I~I~G~sGSGKTTla~~La~~l~ 57 (473)
+.|.|++|+||||+++.+++.+.
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 89999999999999999998864
No 461
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=94.10 E-value=0.027 Score=48.79 Aligned_cols=24 Identities=17% Similarity=0.303 Sum_probs=21.1
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMII 53 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La 53 (473)
.....|+|.|.+|||||||.+.|.
T Consensus 7 ~~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 7 DHLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHh
Confidence 445789999999999999999885
No 462
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.10 E-value=0.028 Score=52.36 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=21.8
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.......|+|.|.+|+||||+.+.|..
T Consensus 17 ~~~~~l~I~lvG~~g~GKSSlin~l~~ 43 (247)
T 3lxw_A 17 QGESTRRLILVGRTGAGKSATGNSILG 43 (247)
T ss_dssp ---CEEEEEEESSTTSSHHHHHHHHHT
T ss_pred cCCCceEEEEECCCCCcHHHHHHHHhC
Confidence 334568899999999999999999864
No 463
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=94.09 E-value=0.032 Score=49.06 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+...|+|.|.+|||||||.+.|..
T Consensus 18 ~~~~ki~v~G~~~~GKSsli~~l~~ 42 (189)
T 1z06_A 18 SRIFKIIVIGDSNVGKTCLTYRFCA 42 (189)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CceEEEEEECCCCCCHHHHHHHHHc
Confidence 4567899999999999999999875
No 464
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.08 E-value=0.022 Score=57.24 Aligned_cols=26 Identities=15% Similarity=0.367 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
..+.++.|.|++|||||||+..|+-.
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 34568999999999999999987643
No 465
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=94.04 E-value=0.006 Score=64.90 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=24.7
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRD 58 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~ 58 (473)
.+..++|.|++||||||+++.|+..++.
T Consensus 59 ~g~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 59 QKRHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp TTCCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CCCEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 3457999999999999999999998764
No 466
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=94.03 E-value=0.031 Score=47.77 Aligned_cols=23 Identities=17% Similarity=0.250 Sum_probs=20.7
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...|+|.|.+|+|||||.+.|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 46799999999999999999975
No 467
>3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B
Probab=94.02 E-value=0.036 Score=54.33 Aligned_cols=25 Identities=24% Similarity=0.331 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+.+.+|.|++||||||+..+|.-.+
T Consensus 23 ~~~~~i~G~NGsGKS~lleAi~~~l 47 (339)
T 3qkt_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (339)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4678999999999999999886544
No 468
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=94.02 E-value=0.034 Score=48.16 Aligned_cols=26 Identities=19% Similarity=0.263 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
+....|+|.|.+|+|||||.+.|...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 44578999999999999999999753
No 469
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.99 E-value=0.1 Score=53.15 Aligned_cols=39 Identities=18% Similarity=0.060 Sum_probs=30.7
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHHhC---CCCEEEEecC
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISRLR---DQRVVLVNQD 67 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~l~---~~~~~~is~D 67 (473)
..++.++.|+|+||+||||++..++...- +..+.++++.
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 44567999999999999999999987542 3457778774
No 470
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.98 E-value=0.031 Score=48.83 Aligned_cols=24 Identities=21% Similarity=0.403 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...|+|.|.+|||||||.+.|..
T Consensus 3 ~~~ki~v~G~~~~GKSsli~~l~~ 26 (189)
T 4dsu_A 3 TEYKLVVVGADGVGKSALTIQLIQ 26 (189)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHH
T ss_pred cEEEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999975
No 471
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=93.98 E-value=0.028 Score=54.61 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=24.8
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
..+..+.|.|++|+|||++++.+++.+.
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~ 70 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELI 70 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4567889999999999999999998884
No 472
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=93.98 E-value=0.035 Score=48.94 Aligned_cols=26 Identities=12% Similarity=0.273 Sum_probs=21.6
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
..+...|+|.|.+|+|||||.+.|..
T Consensus 18 ~~~~~ki~vvG~~~vGKTsLi~~l~~ 43 (187)
T 3c5c_A 18 GPLEVNLAILGRRGAGKSALTVKFLT 43 (187)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHh
Confidence 34557899999999999999998875
No 473
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=93.97 E-value=0.044 Score=53.32 Aligned_cols=39 Identities=18% Similarity=0.394 Sum_probs=29.7
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHhC--------CCCEEEEecCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRLR--------DQRVVLVNQDS 68 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l~--------~~~~~~is~D~ 68 (473)
..+.++.|.|++||||||++..++.... +.++.+++...
T Consensus 105 ~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 105 ETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 3456899999999999999999987641 23466676654
No 474
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.97 E-value=0.024 Score=50.90 Aligned_cols=28 Identities=21% Similarity=0.181 Sum_probs=23.3
Q ss_pred CCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 27 MPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 27 ~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
++......|+|.|.+|+|||||.+.|..
T Consensus 20 ~~~~~~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 20 FQSMIRKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp GGGSEEEEEEEEECTTSSHHHHHHHHHH
T ss_pred cccccCcEEEEECcCCCCHHHHHHHHhc
Confidence 3444567899999999999999999975
No 475
>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8
Probab=93.95 E-value=0.012 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.310 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
++.+++|.|+||||||||.+.|...
T Consensus 172 ~G~~~~lvG~sG~GKSTLln~L~g~ 196 (307)
T 1t9h_A 172 QDKTTVFAGQSGVGKSSLLNAISPE 196 (307)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHhccc
Confidence 4568999999999999999999644
No 476
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=93.94 E-value=0.033 Score=51.43 Aligned_cols=25 Identities=28% Similarity=0.435 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.....|+|.|.+|+|||||.+.|..
T Consensus 27 ~~~~~i~lvG~~g~GKStlin~l~g 51 (239)
T 3lxx_A 27 NSQLRIVLVGKTGAGKSATGNSILG 51 (239)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHT
T ss_pred CCceEEEEECCCCCCHHHHHHHHcC
Confidence 3457899999999999999999975
No 477
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=93.93 E-value=0.042 Score=49.30 Aligned_cols=29 Identities=24% Similarity=0.155 Sum_probs=24.2
Q ss_pred CCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 26 TMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 26 ~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.|.......|+|.|.+|+|||||.+.|..
T Consensus 3 ~m~~~~~~ki~i~G~~~~GKTsli~~l~~ 31 (212)
T 2j0v_A 3 HMSVSKFIKCVTVGDGAVGKTCMLICYTS 31 (212)
T ss_dssp CCSCCCEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CCCcCceEEEEEECCCCCCHHHHHHHHhc
Confidence 34445668899999999999999999875
No 478
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=93.92 E-value=0.026 Score=54.88 Aligned_cols=32 Identities=16% Similarity=0.060 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 34 iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
-+.+.|++|+|||++++.+++.++. .+..++.
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~-~~~~i~~ 79 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDL-DFHRIQF 79 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTC-CEEEEEC
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCC-CeEEEec
Confidence 4889999999999999999998863 2444443
No 479
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=93.92 E-value=0.039 Score=48.54 Aligned_cols=26 Identities=19% Similarity=0.230 Sum_probs=22.5
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.+....|+|.|.+|+|||||.+.|..
T Consensus 19 ~~~~~ki~vvG~~~~GKSsli~~l~~ 44 (189)
T 2gf9_A 19 SDYMFKLLLIGNSSVGKTSFLFRYAD 44 (189)
T ss_dssp CSEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCceeEEEEECCCCCCHHHHHHHHHc
Confidence 34467899999999999999999975
No 480
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.91 E-value=0.03 Score=47.88 Aligned_cols=25 Identities=16% Similarity=0.340 Sum_probs=21.6
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
+...|+|.|.+|||||||.+.|...
T Consensus 5 ~~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 5 RELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3468999999999999999999753
No 481
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=93.90 E-value=0.043 Score=47.80 Aligned_cols=24 Identities=17% Similarity=0.321 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...|+|.|.+|+|||||.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~ 40 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQ 40 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHh
Confidence 457899999999999999999975
No 482
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=93.89 E-value=0.031 Score=53.92 Aligned_cols=35 Identities=17% Similarity=0.280 Sum_probs=27.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEecCCC
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~D~~ 69 (473)
.+.-|.|+|+||+||||+|-.|.++ |..+++-|..
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~~----G~~lv~DD~v 180 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLINK----NHLFVGDDAI 180 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHTT----TCEEEEEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHc----CCEEEeCCEE
Confidence 3467999999999999999988653 4677766543
No 483
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=93.89 E-value=0.056 Score=50.67 Aligned_cols=36 Identities=22% Similarity=0.341 Sum_probs=30.4
Q ss_pred EEEEEEcCCCCcHHHHHHHHHHHhCC--CCEEEEecCC
Q 035513 33 FVIGVAGGTASGKTTVCNMIISRLRD--QRVVLVNQDS 68 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~~l~~--~~~~~is~D~ 68 (473)
++|+|+|..|+||||++..|+..+.. ..+.++++|-
T Consensus 2 ~vI~vs~KGGvGKTT~a~nLA~~la~~G~~VlliD~D~ 39 (269)
T 1cp2_A 2 RQVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMVVGCDP 39 (269)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEEECT
T ss_pred cEEEEecCCCCcHHHHHHHHHHHHHHCCCcEEEEcCCC
Confidence 67888999999999999999988753 4588889884
No 484
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=93.88 E-value=0.029 Score=50.04 Aligned_cols=30 Identities=20% Similarity=0.286 Sum_probs=22.7
Q ss_pred CCCCCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 25 ~~~~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
..........|+|.|.+|+|||||.+.|..
T Consensus 18 ~~~~~~~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 18 GSIWSDFLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp ----CCEEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cccccCcceEEEEECcCCCCHHHHHHHHHh
Confidence 344445568899999999999999999863
No 485
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=93.87 E-value=0.036 Score=48.36 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+...|+|.|.+|||||||.+.|...
T Consensus 8 ~~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 8 DFLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp SEEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECCCCCCHHHHHHHHHcC
Confidence 44578999999999999999999753
No 486
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.87 E-value=0.037 Score=48.12 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=21.4
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...|+|.|.+|||||||.+.|..
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~ 40 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMY 40 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHhh
Confidence 457899999999999999999975
No 487
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=93.87 E-value=0.034 Score=48.26 Aligned_cols=25 Identities=12% Similarity=0.213 Sum_probs=21.6
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.....|+|.|.+|||||||.+.|..
T Consensus 10 ~~~~ki~v~G~~~~GKSsli~~l~~ 34 (181)
T 2efe_B 10 SINAKLVLLGDVGAGKSSLVLRFVK 34 (181)
T ss_dssp CEEEEEEEECCTTSCHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3456899999999999999999875
No 488
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.87 E-value=0.026 Score=48.24 Aligned_cols=24 Identities=21% Similarity=0.357 Sum_probs=21.2
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
+...|+|.|.+|+|||||.+.|..
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~ 28 (170)
T 1r2q_A 5 CQFKLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ceEEEEEECCCCCCHHHHHHHHHc
Confidence 346899999999999999999975
No 489
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=93.86 E-value=0.044 Score=48.40 Aligned_cols=25 Identities=16% Similarity=0.318 Sum_probs=22.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.....|+|.|.+|||||||.+.|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4567899999999999999999975
No 490
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=93.86 E-value=0.03 Score=56.96 Aligned_cols=25 Identities=24% Similarity=0.190 Sum_probs=22.4
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
+..+.|.|++|+||||+++.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999999876
No 491
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.86 E-value=0.059 Score=53.19 Aligned_cols=40 Identities=18% Similarity=0.300 Sum_probs=31.2
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh--CCCCEEEEecCCC
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRL--RDQRVVLVNQDSF 69 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l--~~~~~~~is~D~~ 69 (473)
.++.++.|.|++||||||+|..++... .+..+.++++..-
T Consensus 61 ~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s 102 (356)
T 1u94_A 61 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 102 (356)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 355689999999999999999988654 2345888888643
No 492
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=93.86 E-value=0.036 Score=57.20 Aligned_cols=35 Identities=23% Similarity=0.282 Sum_probs=27.1
Q ss_pred CCEEEEEEcCCCCcHHHHHHHHHHHhCCCCEEEEec
Q 035513 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQ 66 (473)
Q Consensus 31 ~~~iI~I~G~sGSGKTTla~~La~~l~~~~~~~is~ 66 (473)
.+.-|.|.|++|+|||++|+.++..++ ..+..+++
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~-~~fv~vn~ 271 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETG-AFFFLING 271 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCS-SEEEEEEH
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhC-CCEEEEEc
Confidence 345689999999999999999999875 22444444
No 493
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=93.86 E-value=0.033 Score=53.86 Aligned_cols=26 Identities=15% Similarity=0.141 Sum_probs=22.8
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR 57 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~ 57 (473)
...+.|.|++|+|||++++.|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45788999999999999999998764
No 494
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=93.84 E-value=0.038 Score=48.67 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
.....|+|.|.+|+|||||.+.|..
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~ 38 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFAD 38 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHH
T ss_pred ccceEEEEECcCCCCHHHHHHHHHc
Confidence 3457899999999999999999975
No 495
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=93.82 E-value=0.039 Score=49.18 Aligned_cols=27 Identities=22% Similarity=0.390 Sum_probs=22.2
Q ss_pred CCCCEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 29 TKQPFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 29 ~~~~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
......|+|.|.+|+|||||.+.|...
T Consensus 5 ~~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 5 KKVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp --CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cCcceEEEEECcCCCCHHHHHHHHHcC
Confidence 345678999999999999999999753
No 496
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=93.76 E-value=0.063 Score=51.06 Aligned_cols=38 Identities=21% Similarity=0.293 Sum_probs=31.3
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHHhC--CCCEEEEecCCC
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISRLR--DQRVVLVNQDSF 69 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~l~--~~~~~~is~D~~ 69 (473)
+++|+|+|..|+||||++..|+..+. +..+.++++|--
T Consensus 2 MkvIavs~KGGvGKTT~a~nLA~~La~~G~rVlliD~D~q 41 (289)
T 2afh_E 2 MRQCAIYGKGGIGKSTTTQNLVAALAEMGKKVMIVGCDPK 41 (289)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred ceEEEEeCCCcCcHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 46888899999999999999998764 345888999853
No 497
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.72 E-value=0.044 Score=46.76 Aligned_cols=22 Identities=23% Similarity=0.376 Sum_probs=20.1
Q ss_pred EEEEEEcCCCCcHHHHHHHHHH
Q 035513 33 FVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 33 ~iI~I~G~sGSGKTTla~~La~ 54 (473)
..|+|.|.+|||||||.+.|..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 5799999999999999999875
No 498
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=93.72 E-value=0.038 Score=52.16 Aligned_cols=24 Identities=25% Similarity=0.367 Sum_probs=21.2
Q ss_pred CEEEEEEcCCCCcHHHHHHHHHHH
Q 035513 32 PFVIGVAGGTASGKTTVCNMIISR 55 (473)
Q Consensus 32 ~~iI~I~G~sGSGKTTla~~La~~ 55 (473)
.+.|+|.|++||||||+.+.|...
T Consensus 3 ~~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 3 LKTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHTT
T ss_pred eeEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 499
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=93.71 E-value=0.033 Score=48.66 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=21.3
Q ss_pred CCCCCEEEEEEcCCCCcHHHHHHHHHH
Q 035513 28 PTKQPFVIGVAGGTASGKTTVCNMIIS 54 (473)
Q Consensus 28 ~~~~~~iI~I~G~sGSGKTTla~~La~ 54 (473)
...+...|+|.|.+|+|||||.+.|..
T Consensus 17 ~~~~~~~i~v~G~~~~GKSsli~~l~~ 43 (181)
T 2h17_A 17 RGSQEHKVIIVGLDNAGKTTILYQFSM 43 (181)
T ss_dssp ----CEEEEEEEETTSSHHHHHHHHHT
T ss_pred CCCceeEEEEECCCCCCHHHHHHHHhc
Confidence 444568899999999999999999974
No 500
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=93.71 E-value=0.025 Score=56.06 Aligned_cols=26 Identities=23% Similarity=0.342 Sum_probs=21.9
Q ss_pred CCCEEEEEEcCCCCcHHHHHHHHHHHh
Q 035513 30 KQPFVIGVAGGTASGKTTVCNMIISRL 56 (473)
Q Consensus 30 ~~~~iI~I~G~sGSGKTTla~~La~~l 56 (473)
..+ +.+|+|++||||||+...|.-.+
T Consensus 22 ~~g-~~~i~G~NGaGKTTll~ai~~al 47 (365)
T 3qf7_A 22 QSG-ITVVEGPNGAGKSSLFEAISFAL 47 (365)
T ss_dssp CSE-EEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCC-eEEEECCCCCCHHHHHHHHHHHh
Confidence 344 67899999999999999998654
Done!