RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= 035513
(473 letters)
>gnl|CDD|238981 cd02023, UMPK, Uridine monophosphate kinase (UMPK, EC 2.7.1.48),
also known as uridine kinase or uridine-cytidine kinase
(UCK), catalyzes the reversible phosphoryl transfer from
ATP to uridine or cytidine to yield UMP or CMP. In the
primidine nucleotide-salvage pathway, this enzyme
combined with nucleoside diphosphate kinases further
phosphorylates UMP and CMP to form UTP and CTP. This
kinase also catalyzes the phosphorylation of several
cytotoxic ribonucleoside analogs such as 5-flurrouridine
and cyclopentenyl-cytidine.
Length = 198
Score = 321 bits (824), Expect = e-109
Identities = 118/198 (59%), Positives = 160/198 (80%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+IG+AGG+ SGKTTV II +L + +VV+++QDS+Y L+ E+L+ + N+DHPDAFD
Sbjct: 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYKDLSHEELEERKNNNYDHPDAFD 60
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMS 153
+LL+S ++ LK+G++V IP YDFK+H R +++ + P+DV ILEGIL L+D +RDLM
Sbjct: 61 FDLLISHLQDLKNGKSVEIPVYDFKTHSRLKETVTVYPADVIILEGILALYDKELRDLMD 120
Query: 154 MKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPR 213
+KIFVDTD+DVRL RRI+RD VERGRD+E V++QY +FVKP E+FI P+K+YAD+IIPR
Sbjct: 121 LKIFVDTDADVRLIRRIERDIVERGRDLESVINQYLKFVKPMHEQFIEPTKRYADVIIPR 180
Query: 214 GGDNDVAIDLIVQHILTK 231
GGDN VAIDLIVQHI +K
Sbjct: 181 GGDNHVAIDLIVQHIKSK 198
>gnl|CDD|235492 PRK05480, PRK05480, uridine/cytidine kinase; Provisional.
Length = 209
Score = 295 bits (757), Expect = 8e-99
Identities = 103/212 (48%), Positives = 143/212 (67%), Gaps = 6/212 (2%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS---LTDEKLQNLHD 83
M K+P +IG+AGG+ SGKTTV + I L D+ + ++ QDS+Y L+ E+
Sbjct: 1 MMMKKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYYKDQSHLSFEERVKT-- 58
Query: 84 YNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVL 143
N+DHPDAFD +LL+ ++ LK G+A+ IP YD+ H R +++ + P DV ILEGIL+L
Sbjct: 59 -NYDHPDAFDHDLLIEHLKALKAGKAIEIPVYDYTEHTRSKETIRVEPKDVIILEGILLL 117
Query: 144 HDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPS 203
D R+RDLM +KIFVDT D+RL RR++RD ERGR +E V++QY V+P +FI PS
Sbjct: 118 EDERLRDLMDIKIFVDTPLDIRLIRRLKRDVNERGRSLESVINQYLSTVRPMHLQFIEPS 177
Query: 204 KKYADIIIPRGGDNDVAIDLIVQHILTKLGQH 235
K+YADIIIP GG N VAID++ I L ++
Sbjct: 178 KRYADIIIPEGGKNRVAIDILKAKIRQLLEKN 209
>gnl|CDD|232890 TIGR00235, udk, uridine kinase. Model contains a number of longer
eukaryotic proteins and starts bringing in
phosphoribulokinase hits at scores of 160 and below
[Purines, pyrimidines, nucleosides, and nucleotides,
Salvage of nucleosides and nucleotides].
Length = 207
Score = 246 bits (631), Expect = 5e-80
Identities = 94/206 (45%), Positives = 139/206 (67%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M + +IG+ GG+ SGKTTV I +L +V+++QD++Y + ++ NF
Sbjct: 1 MDKPKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNYYKDQSHLEMAERKKTNF 60
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP 146
DHPDAFD +LL ++ LK+G + +P YD+ +H R +++ I P DV ILEGI+ L D
Sbjct: 61 DHPDAFDNDLLYEHLKNLKNGSPIDVPVYDYVNHTRPKETVHIEPKDVVILEGIMPLFDE 120
Query: 147 RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKY 206
R+RDLM +KIFVDT D+RL RRI+RD ERGR ++ V+DQY + V+P +E+F+ P+K+Y
Sbjct: 121 RLRDLMDLKIFVDTPLDIRLIRRIERDINERGRSLDSVIDQYRKTVRPMYEQFVEPTKQY 180
Query: 207 ADIIIPRGGDNDVAIDLIVQHILTKL 232
AD+IIP GG N+VAI+++ I L
Sbjct: 181 ADLIIPEGGRNEVAINVLDTKIKHLL 206
>gnl|CDD|223645 COG0572, Udk, Uridine kinase [Nucleotide transport and metabolism].
Length = 218
Score = 247 bits (632), Expect = 6e-80
Identities = 99/212 (46%), Positives = 151/212 (71%)
Query: 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDY 84
++ +IG+AGG+ SGKTTV + +L ++VV+++ D +Y + + +
Sbjct: 1 MMKKPEKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKDQSHLPFEERNKI 60
Query: 85 NFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLH 144
N+DHP+AFD +LL+ ++ LK G+ V +P YD+K+H R+ ++ + P+DV I+EGIL+L+
Sbjct: 61 NYDHPEAFDLDLLIEHLKDLKQGKPVDLPVYDYKTHTREPETIKVEPNDVVIVEGILLLY 120
Query: 145 DPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSK 204
D R+RDLM +KIFVDTD+DVRL RRI+RD ERGRD+E V++QY + V+P +E+FI P+K
Sbjct: 121 DERLRDLMDLKIFVDTDADVRLIRRIKRDVQERGRDLESVIEQYVKTVRPMYEQFIEPTK 180
Query: 205 KYADIIIPRGGDNDVAIDLIVQHILTKLGQHD 236
KYADIIIP GG N+VA+DL+ I + L + +
Sbjct: 181 KYADIIIPSGGKNEVAVDLLQAKIASSLSEQN 212
>gnl|CDD|223113 COG0035, Upp, Uracil phosphoribosyltransferase [Nucleotide
transport and metabolism].
Length = 210
Score = 200 bits (511), Expect = 5e-62
Identities = 73/208 (35%), Positives = 118/208 (56%), Gaps = 4/208 (1%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
++ ++ T++RD T T +F D + RL+ LP + +I TP G
Sbjct: 5 YVIDHPLVKHKLTILRDKNTGTKEFRELLDEIGRLLAYEATRDLPLEKVEIETPLGPT-E 63
Query: 306 GVVFC-RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADIS 363
GV +++ + I+R+G M L ++G I I+R+ + L Y+KLP DI
Sbjct: 64 GVQIAGKKIVIVPILRAGLGMVEGLLKLIPSARVGHIGIYRDEETLEPVLYYEKLPEDID 123
Query: 364 SRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVT 423
R V++LDP+LA+G SA+ AI L+ +G P+ NI ++L+AAP+GI A+ K P ++I T
Sbjct: 124 ERTVIVLDPMLATGGSAIAAIDLLKKRGGPK-NIKVVSLVAAPEGIKAVEKAHPDVEIYT 182
Query: 424 SEIDSSIDEHACVIPGMGEFGDRYFGTD 451
+ ID ++E ++PG+G+ GDR FGT
Sbjct: 183 AAIDEGLNEKGYIVPGLGDAGDRLFGTK 210
>gnl|CDD|201257 pfam00485, PRK, Phosphoribulokinase / Uridine kinase family. In
Arabidopsis the region carries two binding domains, a
phosphoribosylpyrophosphate-binding domain and, at the
very C-terminus, a uracil-binding domain.
Length = 197
Score = 166 bits (422), Expect = 4e-49
Identities = 61/198 (30%), Positives = 91/198 (45%), Gaps = 12/198 (6%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRV--------VLVNQDSFYHSLTDEKLQNLH--D 83
+IGV G + +GKTTV +S + V D FY L E +
Sbjct: 1 IIGVTGSSGAGKTTVARTFVSIFGREGVPAAGIEGDSFHRYDRFYMDLHPEDRKRAGNNH 60
Query: 84 YNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRK-QQSRLINPSDVFILEGILV 142
Y+F P+A D +LL ++LK G + P Y+ + + LI +D+ EG+
Sbjct: 61 YSFFSPEANDFDLLYEQFKELKEGGSGDKPIYNHVTGEADPTWPELIEGADILFYEGLHG 120
Query: 143 LHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILP 202
L+D RV L+ +KI VD D ++ ++IQRD ERG +E V D KP + +I P
Sbjct: 121 LYDERVAQLLDLKIGVDPDINLEWIQKIQRDMAERGHSLEAVTDSIL-RRKPDYVNYICP 179
Query: 203 SKKYADIIIPRGGDNDVA 220
Y D+ R D +
Sbjct: 180 QFSYTDLNFQRVPTVDTS 197
>gnl|CDD|130163 TIGR01091, upp, uracil phosphoribosyltransferase. A fairly deep
split in phylogenetic and UPGMA trees separates this
mostly prokaryotic set of uracil
phosphoribosyltransferases from a mostly eukaryotic set
that includes uracil phosphoribosyltransferase, uridine
kinases, and other, uncharacterized proteins [Purines,
pyrimidines, nucleosides, and nucleotides, Salvage of
nucleosides and nucleotides].
Length = 207
Score = 134 bits (339), Expect = 7e-37
Identities = 63/194 (32%), Positives = 107/194 (55%), Gaps = 3/194 (1%)
Query: 258 TLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGIS 317
TL+RD T T +F L RL+ L E ++ TP G G + +++ +
Sbjct: 15 TLLRDKNTDTKEFRELLRELGRLLAYEATRDLELEEVEVETPLGETEGGRILGKKIVLVP 74
Query: 318 IIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIY-QKLPADISSRHVLLLDPILAS 376
I+R+G M + + K+G + +R + + + Y KLP DI R V++LDP+LA+
Sbjct: 75 ILRAGLGMVDGVLKLIPEAKVGHVGAYRNEETLKPVPYYSKLPEDIDERTVIVLDPMLAT 134
Query: 377 GNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACV 436
G + + A+ L+ +G I L+++AAP+GI A+ K P + I T+ ID ++++ +
Sbjct: 135 GGTMIAALDLLKKRGAK--KIKVLSIVAAPEGIEAVEKAHPDVDIYTAAIDEKLNDNGYI 192
Query: 437 IPGMGEFGDRYFGT 450
+PG+G+ GDR FGT
Sbjct: 193 VPGLGDAGDRAFGT 206
>gnl|CDD|234653 PRK00129, upp, uracil phosphoribosyltransferase; Reviewed.
Length = 209
Score = 122 bits (309), Expect = 2e-32
Identities = 72/198 (36%), Positives = 113/198 (57%), Gaps = 11/198 (5%)
Query: 258 TLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGIS 317
TL+RD T+T F + L RL+ LP E +I TP G + ++L +
Sbjct: 17 TLLRDKNTSTKRFRELLEELGRLLAYEATRDLPLEEVEIETPLGKTTGKRIAGKKLVIVP 76
Query: 318 IIRSGESM-ENALRACCKGI---KIGKILIHREGNSGRQLIY-QKLPADISSRHVLLLDP 372
I+R+G M + L+ I ++G I ++R+ + + Y KLP DI R V+++DP
Sbjct: 77 ILRAGLGMVDGVLKL----IPSARVGHIGLYRDEETLEPVEYYVKLPEDIDERTVIVVDP 132
Query: 373 ILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDE 432
+LA+G SA+ AI L+ +G NI L L+AAP+GI A+ + P ++I T+ ID ++E
Sbjct: 133 MLATGGSAIAAIDLLKKRGA--KNIKVLCLVAAPEGIKALEEAHPDVEIYTAAIDEKLNE 190
Query: 433 HACVIPGMGEFGDRYFGT 450
H ++PG+G+ GDR FGT
Sbjct: 191 HGYIVPGLGDAGDRLFGT 208
>gnl|CDD|140322 PTZ00301, PTZ00301, uridine kinase; Provisional.
Length = 210
Score = 122 bits (306), Expect = 3e-32
Identities = 73/196 (37%), Positives = 115/196 (58%), Gaps = 6/196 (3%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ----RVVLVNQDSFYHSLTDEKLQNLHDY-NFDH 88
VIG++G + SGK+++ I+S L + ++ +D FY+ ++ Y N+DH
Sbjct: 5 VIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICED-FYYRDQSNIPESERAYTNYDH 63
Query: 89 PDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV 148
P + + +LL + + +LK G+ V IP YD+ H R + + P V I+EGIL+ + +
Sbjct: 64 PKSLEHDLLTTHLRELKSGKTVQIPQYDYVHHTRSDTAVTMTPKSVLIVEGILLFTNAEL 123
Query: 149 RDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYAD 208
R+ M IFVDT D+ L RR +RD ERGR E V++QY V+P + ++ PSK YAD
Sbjct: 124 RNEMDCLIFVDTPLDICLIRRAKRDMRERGRTFESVIEQYEATVRPMYYAYVEPSKVYAD 183
Query: 209 IIIPRGGDNDVAIDLI 224
II+P DN VA+ ++
Sbjct: 184 IIVPSWKDNSVAVGVL 199
>gnl|CDD|180975 PRK07429, PRK07429, phosphoribulokinase; Provisional.
Length = 327
Score = 115 bits (291), Expect = 7e-29
Identities = 60/198 (30%), Positives = 107/198 (54%), Gaps = 9/198 (4%)
Query: 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDY 84
T+MP + P ++GVAG + GKTT + L ++ V ++ D YHS D K +
Sbjct: 2 TSMPDR-PVLLGVAGDSGCGKTTFLRGLADLLGEELVTVICTDD-YHSY-DRKQRKELGI 58
Query: 85 NFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLH 144
P A + +++ ++ LK GQ + P Y+ ++ I P+ + ++EG+ L+
Sbjct: 59 TALDPRANNLDIMYEHLKALKTGQPILKPIYNHETGTFDPPEY-IEPNKIVVVEGLHPLY 117
Query: 145 DPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSK 204
D RVR+L K+++D +V+++ +I+RD +RG E VL + +P FE +I P +
Sbjct: 118 DERVRELYDFKVYLDPPEEVKIAWKIKRDMAKRGHTYEQVLAEIEA-REPDFEAYIRPQR 176
Query: 205 KYADIII----PRGGDND 218
++AD++I + DND
Sbjct: 177 QWADVVIQFLPTQLIDND 194
>gnl|CDD|238984 cd02026, PRK, Phosphoribulokinase (PRK) is an enzyme involved in
the Benson-Calvin cycle in chloroplasts or
photosynthetic prokaryotes. This enzyme catalyzes the
phosphorylation of D-ribulose 5-phosphate to form
D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 273
Score = 113 bits (285), Expect = 1e-28
Identities = 64/179 (35%), Positives = 99/179 (55%), Gaps = 6/179 (3%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+IGVAG + GK+T + S V ++ D YHSL D K + P A +
Sbjct: 1 IIGVAGDSGCGKSTFLRRLTSLFGSDLVTVICLDD-YHSL-DRKGRKETGITALDPRANN 58
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMS 153
+L+ ++ LK GQA+ P Y+ + LI P+ + ++EG+ L+D RVR+L+
Sbjct: 59 FDLMYEQLKALKEGQAIEKPIYNHVTGL-IDPPELIKPTKIVVIEGLHPLYDERVRELLD 117
Query: 154 MKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQY-ARFVKPSFEEFILPSKKYADIII 211
+++D +V+ + +IQRD ERG +EDVL AR KP FE +I P K+YAD++I
Sbjct: 118 FSVYLDISDEVKFAWKIQRDMAERGHSLEDVLASIEAR--KPDFEAYIDPQKQYADVVI 174
>gnl|CDD|238986 cd02028, UMPK_like, Uridine monophosphate kinase_like (UMPK_like)
is a family of proteins highly similar to the uridine
monophosphate kinase (UMPK, EC 2.7.1.48), also known as
uridine kinase or uridine-cytidine kinase (UCK).
Length = 179
Score = 105 bits (265), Expect = 1e-26
Identities = 62/182 (34%), Positives = 96/182 (52%), Gaps = 10/182 (5%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA 91
V+G+AG + SGKTT + ++LR V+++ D +Y K D N+D
Sbjct: 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY---VPRKTPRDEDGNYDFESI 57
Query: 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLI-NPSDVFILEGILVLHDPRVRD 150
D +LL ++ L +G+ V +P YDF++ KR+ +L PS V ILEGI L+ R+R
Sbjct: 58 LDLDLLNKNLHDLLNGKEVELPIYDFRTGKRRGYRKLKLPPSGVVILEGIYALN-ERLRS 116
Query: 151 LMSMKIFVDT-DSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADI 209
L+ +++ V RL RR+ RD RG E + + PS EEFI+P + A I
Sbjct: 117 LLDIRVAVSGGVHLNRLLRRVVRDIQFRGYSAELTILMWPSV--PSGEEFIIPPLQEAAI 174
Query: 210 II 211
++
Sbjct: 175 VM 176
>gnl|CDD|215198 PLN02348, PLN02348, phosphoribulokinase.
Length = 395
Score = 98.0 bits (244), Expect = 3e-22
Identities = 63/204 (30%), Positives = 96/204 (47%), Gaps = 31/204 (15%)
Query: 30 KQPFVIGVAGGTASGKTTV---------------------CNMIISRLRDQRVVLVNQDS 68
VIG+A + GK+T N +IS D V+ D
Sbjct: 47 DGTVVIGLAADSGCGKSTFMRRLTSVFGGAAKPPKGGNPDSNTLIS---DTTTVICLDD- 102
Query: 69 FYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRL 128
YHSL D + P A + +L+ ++ LK G+AV P Y+ + L
Sbjct: 103 -YHSL-DRTGRKEKGVTALDPRANNFDLMYEQVKALKEGKAVEKPIYNHVT-GLLDPPEL 159
Query: 129 INPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQY 188
I P + ++EG+ ++D RVRDL+ I++D DV+ + +IQRD ERG +E +
Sbjct: 160 IEPPKILVIEGLHPMYDERVRDLLDFSIYLDISDDVKFAWKIQRDMAERGHSLESIKASI 219
Query: 189 -ARFVKPSFEEFILPSKKYADIII 211
AR KP F+ +I P K+YAD++I
Sbjct: 220 EAR--KPDFDAYIDPQKQYADVVI 241
>gnl|CDD|215297 PLN02541, PLN02541, uracil phosphoribosyltransferase.
Length = 244
Score = 82.9 bits (205), Expect = 5e-18
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 1/95 (1%)
Query: 357 KLPADISSRH-VLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKR 415
KLP VL++DP+LA+G + V AI ++S+G I + +AAP + + ++
Sbjct: 149 KLPDKFPEGSRVLVVDPMLATGGTIVAAIDELVSRGASVEQIRVVCAVAAPPALKKLSEK 208
Query: 416 FPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
FP + + ID ++E ++PG+G+ GDR FGT
Sbjct: 209 FPGLHVYAGIIDEEVNEKGYIVPGLGDAGDRSFGT 243
>gnl|CDD|177952 PLN02318, PLN02318, phosphoribulokinase/uridine kinase.
Length = 656
Score = 81.4 bits (201), Expect = 2e-16
Identities = 54/179 (30%), Positives = 95/179 (53%), Gaps = 10/179 (5%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
++GVAG + +GKT +++ + + +++ D++ S + D NFD P D
Sbjct: 67 LVGVAGPSGAGKTVFTEKVLNFMPS--IAVISMDNYNDS------SRIIDGNFDDPRLTD 118
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSD-VFILEGILVLHDPRVRDLM 152
+ LL ++ LK G++V +P YDFKS R L PS + I+EGI L + ++R L+
Sbjct: 119 YDTLLDNIHDLKAGKSVQVPIYDFKSSSRVGYRTLEVPSSRIVIIEGIYALSE-KLRPLL 177
Query: 153 SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIII 211
+++ V L +R+ RD G++ E+++ Q + V P ++ FI P + A I I
Sbjct: 178 DLRVSVTGGVHFDLVKRVLRDIQRAGQEPEEIIHQISETVYPMYKAFIEPDLQTAHIKI 236
>gnl|CDD|223998 COG1072, CoaA, Panthothenate kinase [Coenzyme metabolism].
Length = 283
Score = 69.6 bits (171), Expect = 3e-13
Identities = 41/155 (26%), Positives = 70/155 (45%), Gaps = 13/155 (8%)
Query: 29 TKQPFVIGVAGGTASGKTT----VCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDY 84
++PF+IG+AG A GK+T + ++ +V LV D F++ + L
Sbjct: 79 QQRPFIIGIAGSVAVGKSTTARILQALLSRWPESPKVDLVTMDGFHYPNAVLDERGLMAR 138
Query: 85 N-FDHPDAFDTELLLSDMEKLKHGQ-AVSIPDYDFKSHK-RKQQSRLINPSDVFILEGIL 141
F P+++D LL + +K G+ V P Y + +++ D+ I+EG
Sbjct: 139 KGF--PESYDVAALLRFLSDVKAGKPDVFAPVYSHLIYDPVPDAFQVVPQPDILIVEGNN 196
Query: 142 VLHDP----RVRDLMSMKIFVDTDSDVRLSRRIQR 172
VL D + D I+VD D ++ R I+R
Sbjct: 197 VLQDGEPWLFLSDFFDFSIYVDADEELLEERYIER 231
>gnl|CDD|238983 cd02025, PanK, Pantothenate kinase (PanK) catalyzes the
phosphorylation of pantothenic acid to form
4'-phosphopantothenic, which is the first of five steps
in coenzyme A (CoA) biosynthetic pathway. The reaction
carried out by this enzyme is a key regulatory point in
CoA biosynthesis.
Length = 220
Score = 65.4 bits (160), Expect = 4e-12
Identities = 58/222 (26%), Positives = 100/222 (45%), Gaps = 43/222 (19%)
Query: 34 VIGVAGGTASGKTT---VCNMIISRLRDQ-RVVLVNQDSFYHSLTDEKLQNLHDYN-FDH 88
+IG+AG A GK+T V ++SR D V L+ D F + + + L D F
Sbjct: 1 IIGIAGSVAVGKSTTARVLQALLSRWPDHPNVELITTDGFLYPNKELIERGLMDRKGF-- 58
Query: 89 PDAFDTELLLSDMEKLKHG-QAVSIPDYDFKSHKR-KQQSRLINPSDVFILEGILVLHDP 146
P+++D E LL ++ +K G + V IP Y ++ + + ++ D+ I+EG+ VL
Sbjct: 59 PESYDMEALLKFLKDIKSGKKNVKIPVYSHLTYDVIPGEKQTVDQPDILIIEGLNVLQTG 118
Query: 147 R-----VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI-------------------E 182
+ V D I+VD D D I++ ++R + E
Sbjct: 119 QNPRLFVSDFFDFSIYVDADED-----DIEKWYIKRFLKLRETAFSDPDSYFHRYAKMSE 173
Query: 183 DVLDQYARFV-----KPSFEEFILPSKKYADIIIPRGGDNDV 219
+ +AR V + E ILP++ AD+I+ +G D+ +
Sbjct: 174 EEAIAFAREVWKNINLKNLRENILPTRNRADLILEKGADHSI 215
>gnl|CDD|238982 cd02024, NRK1, Nicotinamide riboside kinase (NRK) is an enzyme
involved in the metabolism of nicotinamide adenine
dinucleotide (NAD+). This enzyme catalyzes the
phosphorylation of nicotinamide riboside (NR) to form
nicotinamide mononucleotide (NMN). It defines the NR
salvage pathway of NAD+ biosynthesis in addition to the
pathways through nicotinic acid mononucleotide (NaMN).
This enzyme can also phosphorylate the anticancer drug
tiazofurin, which is an analog of nicotinamide riboside.
Length = 187
Score = 63.1 bits (154), Expect = 1e-11
Identities = 29/156 (18%), Positives = 63/156 (40%), Gaps = 20/156 (12%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL--QNLHDYNFDHPDA 91
++G++G T SGKTT+ ++ L + +++QD F+ ++++ +D +A
Sbjct: 1 IVGISGVTNSGKTTLAKLLQRILPN--CCVIHQDDFF--KPEDEIPVDENGFKQWDVLEA 56
Query: 92 FDTELLLSDM-EKLKHGQAV-------------SIPDYDFKSHKRKQQSRLINPSDVFIL 137
D E ++S + + G D + + K + I+
Sbjct: 57 LDMEAMMSTLDYWRETGHFPKFLRSHGNENDPEKEFIEDAQIEETKADLLGAEDLHILIV 116
Query: 138 EGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRD 173
+G L+ + + DL ++ F+ + RR R
Sbjct: 117 DGFLLYNYKPLVDLFDIRYFLRVPYETCKRRREART 152
>gnl|CDD|235466 PRK05439, PRK05439, pantothenate kinase; Provisional.
Length = 311
Score = 64.4 bits (158), Expect = 2e-11
Identities = 60/233 (25%), Positives = 101/233 (43%), Gaps = 52/233 (22%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRL-----RDQRVVLVNQDSFYHSLTDEKLQNL- 81
K PF+IG+AG A GK+T ++ L +V LV D F + + + L
Sbjct: 82 GQKVPFIIGIAGSVAVGKSTTAR-LLQALLSRWPEHPKVELVTTDGFLYPNAVLEERGLM 140
Query: 82 HDYNFDHPDAFDTELLLSDMEKLKHGQA-VSIPDYDFKSHKR----KQQSRLINPSDVFI 136
F P+++D LL + +K G+ V+ P Y SH + + ++ D+ I
Sbjct: 141 KRKGF--PESYDMRALLRFLSDVKSGKPNVTAPVY---SHLIYDIVPGEKQTVDQPDILI 195
Query: 137 LEGILVLHDPR------VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDI--------- 181
+EG+ VL + V D I+VD D D+ I++ +ER +
Sbjct: 196 VEGLNVLQTGQNHHRLFVSDFFDFSIYVDADEDL-----IEKWYIERFLKLRETAFSDPD 250
Query: 182 ----------EDVLDQYARFV-----KPSFEEFILPSKKYADIIIPRGGDNDV 219
E+ AR + P+ EE ILP+++ AD+I+ +G D+ +
Sbjct: 251 SYFHRYAKLSEEEAIAIARQIWDEINLPNLEENILPTRERADLILHKGADHSI 303
>gnl|CDD|200027 TIGR00554, panK_bact, pantothenate kinase, bacterial type. Shown
to be a homodimer in E. coli. This enzyme catalyzes the
rate-limiting step in the biosynthesis of coenzyme A. It
is very well conserved from E. coli to B. subtilis, but
differs considerably from known eukaryotic forms,
described in a separate model [Biosynthesis of
cofactors, prosthetic groups, and carriers, Pantothenate
and coenzyme A].
Length = 290
Score = 64.1 bits (156), Expect = 2e-11
Identities = 56/225 (24%), Positives = 98/225 (43%), Gaps = 36/225 (16%)
Query: 30 KQPFVIGVAGGTASGKTT---VCNMIISRLRDQR-VVLVNQDSFYHSLTDEKLQNLHDYN 85
K P++I +AG A GK+T + ++SR + R V L+ D F H K +NL
Sbjct: 60 KIPYIISIAGSVAVGKSTTARILQALLSRWPEHRKVELITTDGFLHPNQVLKERNLMKKK 119
Query: 86 FDHPDAFDTELLLSDMEKLKHGQA-VSIPDYDFKSHKRKQQS-RLINPSDVFILEGILVL 143
P+++D L+ + LK G+ V+ P Y ++ +++ D+ ILEG+ VL
Sbjct: 120 -GFPESYDMHRLVKFLSDLKSGKPNVTAPVYSHLTYDVIPDGFKVVVQPDILILEGLNVL 178
Query: 144 HDPR----------VRDLMSMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLDQYAR 190
V D + I+VD + D+ + I R R D + YA+
Sbjct: 179 QSGMDYPHDPHHVFVSDFVDFSIYVDAEEDLLQTWYINRFLKFREGAFTDPDSYFHNYAK 238
Query: 191 FVK----------------PSFEEFILPSKKYADIIIPRGGDNDV 219
K + ++ ILP+++ A +I+ +G ++ V
Sbjct: 239 LSKEEAIKTAMTIWKEINWLNLKQNILPTRERASLILTKGANHAV 283
>gnl|CDD|181310 PRK08233, PRK08233, hypothetical protein; Provisional.
Length = 182
Score = 59.4 bits (144), Expect = 2e-10
Identities = 44/208 (21%), Positives = 91/208 (43%), Gaps = 34/208 (16%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD--EKLQNLHDYNFD 87
K+ +I +A + GKTT+ + +L++ + + ++ F + D + + +Y+
Sbjct: 1 KKTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYDFDNCPEDICKWIDKGANYS-- 58
Query: 88 HPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR 147
+ L+ D ++ A S DY I++ +
Sbjct: 59 ---EWVLTPLIKD---IQELIAKSNVDY-------------------IIVDYPFAYLNSE 93
Query: 148 VRDLMSMKIFVDTDSDVRLSRRIQRDTVER-GRDIEDVLDQYARFVKPSFEEFILPSKKY 206
+R + + IF+DT D+ ++RRI RD E G +I + L Y + +P + E + K
Sbjct: 94 MRQFIDVTIFIDTPLDIAMARRILRDFKEDTGNEIHNDLKHYLNYARPLYLEALHTVKPN 153
Query: 207 ADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
ADI++ D ++++ I+ I +L +
Sbjct: 154 ADIVL----DGALSVEEIINQIEEELYR 177
>gnl|CDD|206754 cd06223, PRTases_typeI, Phosphoribosyl transferase (PRT)-type I
domain. Phosphoribosyl transferase (PRT) domain. The
type I PRTases are identified by a conserved PRPP
binding motif which features two adjacent acidic
residues surrounded by one or more hydrophobic residue.
PRTases catalyze the displacement of the
alpha-1'-pyrophosphate of
5-phosphoribosyl-alpha1-pyrpphosphate (PRPP) by a
nitrogen-containing nucleophile. The reaction products
are an alpha-1 substituted ribose-5'-phosphate and a
free pyrophosphate (PP). PRPP, an activated form of
ribose-5-phosphate, is a key metabolite connecting
nucleotide synthesis and salvage pathways. The type I
PRTase family includes a range of diverse phosphoribosyl
transferase enzymes and regulatory proteins of the
nucleotide synthesis and salvage pathways, including
adenine phosphoribosyltransferase EC:2.4.2.7.,
hypoxanthine-guanine-xanthine phosphoribosyltransferase,
hypoxanthine phosphoribosyltransferase EC:2.4.2.8.,
ribose-phosphate pyrophosphokinase EC:2.7.6.1.,
amidophosphoribosyltransferase EC:2.4.2.14., orotate
phosphoribosyltransferase EC:2.4.2.10., uracil
phosphoribosyltransferase EC:2.4.2.9., and
xanthine-guanine phosphoribosyltransferase EC:2.4.2.22.
Length = 130
Score = 56.3 bits (136), Expect = 8e-10
Identities = 25/115 (21%), Positives = 45/115 (39%), Gaps = 8/115 (6%)
Query: 313 LCGISIIRSGESMENALRACCKGIKIGKILIHR----EGNSGRQLIYQKLPADISSRHVL 368
+ I+R G + AL G+ + I R S + L D+ + VL
Sbjct: 17 DVVVGILRGGLPLAAALARAL-GLPLAFIRKERKGPGRTPSEPYGLELPLGGDVKGKRVL 75
Query: 369 LLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVT 423
L+D ++A+G + + AI L+ G + L+ P+G P + +
Sbjct: 76 LVDDVIATGGTLLAAIELLKEAGA--KVVGVAVLLDKPEGGARE-LASPGDPVYS 127
>gnl|CDD|236442 PRK09270, PRK09270, nucleoside triphosphate hydrolase
domain-containing protein; Reviewed.
Length = 229
Score = 52.2 bits (126), Expect = 1e-07
Identities = 38/168 (22%), Positives = 69/168 (41%), Gaps = 13/168 (7%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRV---VLVNQDSFYHSLTDEKLQNLHDYNFD-H 88
++G+AG +GK+T+ + + L+ + V D F H L + L
Sbjct: 34 TIVGIAGPPGAGKSTLAEFLEALLQQDGELPAIQVPMDGF-H-LDNAVLDAHGLRPRKGA 91
Query: 89 PDAFDTELLLSDMEKLKHG-QAVSIPDYDFKSHKRKQQSRLINPSDVFIL-EG-ILVLHD 145
P+ FD L + + +L+ G V P +D + ++ P+ ++ EG L+L +
Sbjct: 92 PETFDVAGLAALLRRLRAGDDEVYWPVFDRSLEDPVADAIVVPPTARLVIVEGNYLLLDE 151
Query: 146 P---RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYAR 190
R+ L IF+D ++V R + R + G E R
Sbjct: 152 EPWRRLAGLFDFTIFLDAPAEVLRERLVAR-KLAGGLSPEAAEAFVLR 198
>gnl|CDD|226691 COG4240, COG4240, Predicted kinase [General function prediction
only].
Length = 300
Score = 53.0 bits (127), Expect = 1e-07
Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 13/132 (9%)
Query: 28 PTKQPFVIGVAGGTASGKTT---VCNMIISRLRDQRVVLVNQDSFYHSLTD-EKLQNLHD 83
+P ++G++G SGK+T + +++ +R ++ D Y + D +L +
Sbjct: 46 ERGRPLIVGISGPQGSGKSTLSALIVRLLAAKGLERTATLSLDDLYLTHADRLRLARQVN 105
Query: 84 YNFDH---PDAFDTELLLSDMEKL-KHGQAVSIPDYDFKSHK----RKQQSRLIN-PSDV 134
P D L L+ + + + G V +P +D + R Q++ I D+
Sbjct: 106 PLLQTRGLPGTHDPTLGLNVLNAIARGGPTVPLPRFDKSAFAGAGDRAPQTQWIKFEVDI 165
Query: 135 FILEGILVLHDP 146
ILEG V P
Sbjct: 166 VILEGWFVGFRP 177
>gnl|CDD|180660 PRK06696, PRK06696, uridine kinase; Validated.
Length = 223
Score = 50.0 bits (120), Expect = 6e-07
Identities = 55/208 (26%), Positives = 85/208 (40%), Gaps = 38/208 (18%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSLTDEKLQ---------- 79
P + + G TASGKTT + + ++ + V+ + D F++ +
Sbjct: 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFHNPRVIRYRRGRESAEGYYE 81
Query: 80 NLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINP------SD 133
+ +DY A LLL + Q Y SH K + NP +
Sbjct: 82 DAYDY-----TAL-RRLLLDPLGPNGDRQ------YRTASHDLKTDIPVHNPPLLAAPNA 129
Query: 134 VFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVK 193
V I++G L P +RDL KIF+DTD +V R +RDT G E+ Y
Sbjct: 130 VLIVDGTF-LLRPELRDLWDYKIFLDTDFEVSRRRGAKRDTEAFGSY-EEAEKMYLARYH 187
Query: 194 PSFEEFI--LPSKKYADIIIPRGGDNDV 219
P+ + +I K+ AD++I DN
Sbjct: 188 PAQKLYIAEANPKERADVVI----DNSD 211
>gnl|CDD|238980 cd02022, DPCK, Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24)
catalyzes the phosphorylation of dephosphocoenzyme A
(dCoA) to yield CoA, which is the final step in CoA
biosynthesis.
Length = 179
Score = 44.8 bits (107), Expect = 2e-05
Identities = 47/207 (22%), Positives = 86/207 (41%), Gaps = 47/207 (22%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+IG+ GG SGK+TV + L++ + +++ D H + E + F
Sbjct: 1 IIGLTGGIGSGKSTVAKL----LKELGIPVIDADKIAHEVY-EPGGPALQAIVEA---FG 52
Query: 94 TELLLSDME--KLKHGQAVSIPDYDFKS-HKRKQQSRLINP---------------SDVF 135
++LL D E + K G+ V F KRK+ + +P V
Sbjct: 53 PDILLEDGELDRKKLGEIV------FADPEKRKKLEAITHPLIRKEIEEQLAEARKEKVV 106
Query: 136 ILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPS 195
+L+ I +L + + L+ I VD ++++ R ++RD G E+ + A +
Sbjct: 107 VLD-IPLLFETGLEKLVDRVIVVDAPPEIQIERLMKRD----GLSEEEAEARIASQM--P 159
Query: 196 FEEFILPSKKYADIIIPRGGDNDVAID 222
EE + AD +I DN +++
Sbjct: 160 LEE----KRARADFVI----DNSGSLE 178
>gnl|CDD|223315 COG0237, CoaE, Dephospho-CoA kinase [Coenzyme metabolism].
Length = 201
Score = 41.9 bits (99), Expect = 2e-04
Identities = 48/216 (22%), Positives = 87/216 (40%), Gaps = 46/216 (21%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+IG+ GG SGK+TV + L + +++ D + + + L + + F
Sbjct: 4 IIGLTGGIGSGKSTVAKI----LAELGFPVIDADDVAREVVEPGGEALQEIA----ERFG 55
Query: 94 TELLLSDME--KLKHGQAVSIPDYDFKSHKRKQQ-SRLINP--------------SDVFI 136
E+L D + K + V F + + + ++++P S +
Sbjct: 56 LEILDEDGGLDRRKLREKV------FNDPEARLKLEKILHPLIRAEIKVVIDGARSPYVV 109
Query: 137 LEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSF 196
LE I +L + I V ++RL R ++RD G D ED + A
Sbjct: 110 LE-IPLLFEAGGEKYFDKVIVVYAPPEIRLERLMKRD----GLDEEDAEARLASQR--DL 162
Query: 197 EEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232
EE + AD++I DND +I+ +++ I L
Sbjct: 163 EEKL----ALADVVI----DNDGSIENLLEQIEKLL 190
>gnl|CDD|216308 pfam01121, CoaE, Dephospho-CoA kinase. This family catalyzes the
phosphorylation of the 3'-hydroxyl group of
dephosphocoenzyme A to form Coenzyme A EC:2.7.1.24. This
enzyme uses ATP in its reaction.
Length = 179
Score = 40.7 bits (96), Expect = 4e-04
Identities = 46/198 (23%), Positives = 83/198 (41%), Gaps = 38/198 (19%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD---EKLQNLHDYNFDHPD 90
++G+ GG SGK+TV N D V +V+ D + + L + D+ F PD
Sbjct: 2 IVGLTGGIGSGKSTVAN----LFADLGVPIVDADVIARQVVEPGSPALAAIVDH-FG-PD 55
Query: 91 AFDT----------ELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGI 140
EL+ SD E+ + A+ P +R+ +L + ++L +
Sbjct: 56 ILLADGQLDRRALRELVFSDPEEKQWLNAILHPLI-----RREMFKQLAQLTSPYVLLDV 110
Query: 141 LVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFI 200
+L + + L + VD ++++ R +QRD + R ++ ++ A S EE
Sbjct: 111 PLLFESGLTKLCHRVLVVDAPVELQVERLMQRDGLSRE-QVQAIIAAQA-----SREE-- 162
Query: 201 LPSKKYADIIIPRGGDND 218
AD ++ DND
Sbjct: 163 --RLALADDVL----DND 174
>gnl|CDD|129256 TIGR00152, TIGR00152, dephospho-CoA kinase. This model produces
scores in the range of 0-25 bits against adenylate,
guanylate, uridine, and thymidylate kinases
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Pantothenate and coenzyme A].
Length = 188
Score = 38.9 bits (91), Expect = 0.002
Identities = 44/211 (20%), Positives = 84/211 (39%), Gaps = 39/211 (18%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDH--PDA 91
+IG+ GG SGK+TV N + + +++ D H + ++ ++ DH
Sbjct: 1 IIGLTGGIGSGKSTVANYLADKY---HFPVIDADKIAHQVVEKG-SPAYEKIVDHFGAQI 56
Query: 92 FDT----------ELLLSDMEKLKHGQAVSIP--DYDFKSHKRKQQSRLINPSDVFILEG 139
+ E + +D E+LK + P K + QS+L ++L
Sbjct: 57 LNEDGELDRKALGERVFNDPEELKWLNNLLHPLIREWMKKLLAQFQSKL-----AYVLLD 111
Query: 140 ILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL-DQYARFVKPSFEE 198
+ +L + ++R L I VD ++L R +QRD + +++ L Q +
Sbjct: 112 VPLLFENKLRSLCDRVIVVDVSPQLQLERLMQRDNLTE-EEVQKRLASQMDIEER----- 165
Query: 199 FILPSKKYADIIIPRGGDNDVAIDLIVQHIL 229
AD +I DN + +V+ +
Sbjct: 166 -----LARADDVI----DNSATLADLVKQLE 187
>gnl|CDD|234620 PRK00081, coaE, dephospho-CoA kinase; Reviewed.
Length = 194
Score = 38.9 bits (92), Expect = 0.002
Identities = 46/225 (20%), Positives = 81/225 (36%), Gaps = 79/225 (35%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK---LQNLHDYNFDH 88
+IG+ GG SGK+TV N+ + +++ D+ H + + LQ +
Sbjct: 2 MLIIGLTGGIGSGKSTVANL----FAELGAPVIDADAIAHEVVEPGGPALQAIV------ 51
Query: 89 PDAFDTELLLSD--MEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP 146
+AF E+L +D +++ K + V F + +++ LE I LH P
Sbjct: 52 -EAFGPEILDADGELDRAKLRELV------FSDPEARKK-----------LEAI--LH-P 90
Query: 147 RVRDLM--------SMKIF---------------------VDTDSDVRLSRRIQRDTVER 177
+R+ + S VD + +L R + RD
Sbjct: 91 LIREEILEQLQEAESSPYVVLDIPLLFENGLEKLVDRVLVVDAPPETQLERLMARD---- 146
Query: 178 GRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAID 222
G E+ A + EE AD +I DN+ ++
Sbjct: 147 GLSEEEAEAIIASQM--PREEK----LARADDVI----DNNGDLE 181
>gnl|CDD|235244 PRK04182, PRK04182, cytidylate kinase; Provisional.
Length = 180
Score = 36.7 bits (86), Expect = 0.011
Identities = 34/157 (21%), Positives = 64/157 (40%), Gaps = 38/157 (24%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEK---LQNLHDYNFDHPD 90
+I ++G SGKTTV ++ +L + V+ + L E+ L+ + Y + P+
Sbjct: 2 IITISGPPGSGKTTVARLLAEKL---GLKHVSAGEIFRELAKERGMSLEEFNKYAEEDPE 58
Query: 91 AFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD 150
D E+ D ++Q + D +LEG L +D
Sbjct: 59 -IDKEI---D----------------------RRQLEIAEKEDNVVLEGRLAGW--MAKD 90
Query: 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187
+KI++ +VR R +R+ G +E+ L++
Sbjct: 91 YADLKIWLKAPLEVRAERIAERE----GISVEEALEE 123
>gnl|CDD|173193 PRK14731, coaE, dephospho-CoA kinase; Provisional.
Length = 208
Score = 36.2 bits (84), Expect = 0.019
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 32 PFVIGVAGGTASGKTTVCNMI 52
PF++GV GG SGK+TVC +
Sbjct: 5 PFLVGVTGGIGSGKSTVCRFL 25
>gnl|CDD|222000 pfam13238, AAA_18, AAA domain.
Length = 128
Score = 34.7 bits (80), Expect = 0.025
Identities = 30/144 (20%), Positives = 49/144 (34%), Gaps = 29/144 (20%)
Query: 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT 94
I + G SGKTT+ + RL D L D +N + +
Sbjct: 1 ILITGTPGSGKTTLAKELAERLGD-------------VLRDLAKEN--GLVLELDEEITD 45
Query: 95 ELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL-VLHDPRVRDLMS 153
E D +KL K ++ + + I++G L L R +DL+
Sbjct: 46 ESKRLDEDKLAKLLD-----------KLEKIIEELAEGENVIIDGHLAELELERFKDLVF 94
Query: 154 MKIFVDTDSDVRLSRRIQRDTVER 177
+ + D + L R +R E
Sbjct: 95 --VVLRADPEELLERLKKRGYSEE 116
>gnl|CDD|224027 COG1102, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 179
Score = 35.4 bits (82), Expect = 0.026
Identities = 36/154 (23%), Positives = 64/154 (41%), Gaps = 33/154 (21%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
VI ++G SGKTTV + L + LV+ + + + E+
Sbjct: 2 VITISGLPGSGKTTVARELAEHL---GLKLVSAGTIFREMARER---------------- 42
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMS 153
+ L + + A P+ D + +R Q L +V +LEG L VR+
Sbjct: 43 -GMSLEEFSRY----AEEDPEIDKEIDRR--QKELAKEGNV-VLEGRLAGW--IVREYAD 92
Query: 154 MKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187
+KI++ +VR R +R+ G D+++ L +
Sbjct: 93 LKIWLKAPLEVRAERIAKRE----GIDVDEALAE 122
>gnl|CDD|219014 pfam06414, Zeta_toxin, Zeta toxin. This family consists of
several bacterial zeta toxin proteins. Zeta toxin is
thought to be part of a postregulational killing system
in bacteria. It relies on antitoxin/toxin systems that
secure stable inheritance of low and medium copy number
plasmids during cell division and kill cells that have
lost the plasmid.
Length = 191
Score = 35.7 bits (83), Expect = 0.028
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 6/69 (8%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF--YHSLTDEKLQNLHD-- 83
P ++P + + G +GKT + ++ L VV ++ D YH DE LQ
Sbjct: 8 PQERPVAVLLGGQPGAGKTELARALLEELGGGNVVRIDPDELRTYHPDYDE-LQKADPKD 66
Query: 84 -YNFDHPDA 91
PDA
Sbjct: 67 ASELTQPDA 75
>gnl|CDD|169051 PRK07667, PRK07667, uridine kinase; Provisional.
Length = 193
Score = 35.5 bits (82), Expect = 0.028
Identities = 31/151 (20%), Positives = 62/151 (41%), Gaps = 28/151 (18%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRV---------VLVNQDSFYHSLTDE-----KL 78
F++G+ G + SGKTT + ++ + + +V ++ YH+ +E L
Sbjct: 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDYIVERNKRYHTGFEEWYEYYYL 77
Query: 79 QNLHDYNFDHPDAFDTELLLSDM-EKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFIL 137
Q +D E L KL++ +++P Y ++ + + I V ++
Sbjct: 78 Q------------WDIEWLRQKFFRKLQNETKLTLPFYHDETDTCEMKKVQIPIVGVIVI 125
Query: 138 EGILVLHDPRVRDLMSMKIFVDTDSDVRLSR 168
EG+ L RD +++D + R R
Sbjct: 126 EGVF-LQRKEWRDFFHYMVYLDCPRETRFLR 155
>gnl|CDD|226463 COG3954, PrkB, Phosphoribulokinase [Energy production and
conversion].
Length = 289
Score = 35.6 bits (82), Expect = 0.041
Identities = 51/211 (24%), Positives = 79/211 (37%), Gaps = 28/211 (13%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMI--ISRLRDQRVVLVNQDSFYH--------SLTDE 76
M K P VI V G + +G TT I + V DSF+ ++
Sbjct: 1 MSAKHP-VIAVTGSSGAGTTTTSLAFRKIFAQLNIHAAEVEGDSFHRYTRPEMDMAIRKA 59
Query: 77 KLQNLHDYNFDHPDAFDTELLLSDM-EKLKHGQAVS---IPDYDFKSHKRKQQ------- 125
+ H F P+A D LL E + G+ S + YD ++ Q
Sbjct: 60 RDAGRHISYFG-PEANDFGLLEQTFIEYGQSGKGRSRKYLHTYD-EAVPWNQVPGTFTPW 117
Query: 126 SRLINPSDVFILEGI---LVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE 182
L P+DV EG+ +V V + + + V ++ +++ RDT ERG E
Sbjct: 118 QPLPEPTDVLFYEGLHGGVVTPQHNVAQHVDLLVGVVPIVNLEWIQKLIRDTSERGHSRE 177
Query: 183 DVLDQYARFVKPSFEEFILPSKKYADIIIPR 213
V+D R + + +I P I R
Sbjct: 178 AVMDSVVRSM-DDYINYITPQFSRTHINFQR 207
>gnl|CDD|234011 TIGR02782, TrbB_P, P-type conjugative transfer ATPase TrbB. The
TrbB protein is found in the trb locus of Agrobacterium
Ti plasmids where it is involved in the type IV
secretion system for plasmid conjugative transfer. TrbB
is a homolog of the vir system VirB11 ATPase , and the
Flp pilus sytem ATPase TadA [Cellular processes,
Conjugation].
Length = 299
Score = 35.5 bits (82), Expect = 0.046
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 35 IGVAGGTASGKTTVCNMIISRL----RDQRVVLV 64
I V GGT SGKTT+ N +++ + RVV++
Sbjct: 135 ILVVGGTGSGKTTLANALLAEIAKNDPTDRVVII 168
>gnl|CDD|238550 cd01130, VirB11-like_ATPase, Type IV secretory pathway component
VirB11, and related ATPases. The homohexamer, VirB11 is
one of eleven Vir proteins, which are required for
T-pilus biogenesis and virulence in the transfer of
T-DNA from the Ti (tumor-inducing) plasmid of bacterial
to plant cells. The pilus is a fibrous cell surface
organelle, which mediates adhesion between bacteria
during conjugative transfer or between bacteria and
host eukaryotic cells during infection. VirB11- related
ATPases include the archaeal flagella biosynthesis
protein and the pilus assembly proteins CpaF/TadA and
TrbB. This alignment contains the C-terminal domain,
which is the ATPase.
Length = 186
Score = 34.6 bits (80), Expect = 0.056
Identities = 11/29 (37%), Positives = 22/29 (75%), Gaps = 1/29 (3%)
Query: 37 VAGGTASGKTTVCNMIISRL-RDQRVVLV 64
++GGT SGKTT+ N +++ + D+R++ +
Sbjct: 30 ISGGTGSGKTTLLNALLAFIPPDERIITI 58
>gnl|CDD|215757 pfam00156, Pribosyltran, Phosphoribosyl transferase domain. This
family includes a range of diverse phosphoribosyl
transferase enzymes. This family includes: Adenine
phosphoribosyltransferase EC:2.4.2.7.
Hypoxanthine-guanine-xanthine phosphoribosyltransferase.
Hypoxanthine phosphoribosyltransferase EC:2.4.2.8.
Ribose-phosphate pyrophosphokinase i EC:2.7.6.1.
Amidophosphoribosyltransferase EC:2.4.2.14. Orotate
phosphoribosyltransferase EC:2.4.2.10. Uracil
phosphoribosyltransferase EC:2.4.2.9. Xanthine-guanine
phosphoribosyltransferase EC:2.4.2.22. In Arabidopsis,
At the very N-terminus of this domain is the P-Loop
NTPase domain.
Length = 123
Score = 33.5 bits (77), Expect = 0.066
Identities = 10/49 (20%), Positives = 22/49 (44%)
Query: 343 IHREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKG 391
+ + +LP + + VL++D +L +G + A+ L+ G
Sbjct: 65 SIKSRGGESVTLLSRLPELLKGKRVLIVDDVLDTGGTLRAAVELLKKAG 113
>gnl|CDD|221983 pfam13207, AAA_17, AAA domain.
Length = 114
Score = 33.0 bits (75), Expect = 0.079
Identities = 23/147 (15%), Positives = 50/147 (34%), Gaps = 34/147 (23%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+I + G SGK+T+ + +L + +++ D E+ D D
Sbjct: 1 IILITGPPGSGKSTLAKKLAEKL---GIPVISLDDLLR----EEGLAELDDGELDDIDID 53
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMS 153
ELL +++L ++++G+ +
Sbjct: 54 LELLEEILDELAK--------------------------QEWVIDGVRESTLELRLEEAD 87
Query: 154 MKIFVDTDSDVRLSRRIQRDTVERGRD 180
+ +F+D R ++R ++RGR
Sbjct: 88 LVVFLDLPLPACRFRLLKR-RLQRGRG 113
>gnl|CDD|222307 pfam13671, AAA_33, AAA domain. This family of domains contain only
a P-loop motif, that is characteristic of the AAA
superfamily. Many of the proteins in this family are
just short fragments so there is no Walker B motif.
Length = 143
Score = 32.7 bits (75), Expect = 0.15
Identities = 38/165 (23%), Positives = 68/165 (41%), Gaps = 27/165 (16%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAF 92
++G+ G SGK+T + LR+ V+++ D+ L + ++ Y +
Sbjct: 3 LMVGLPG---SGKSTFARRL---LRELGAVVLSSDTLRKRLRGDGPPDISYYARASGRVY 56
Query: 93 DTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM 152
L L+ E L+ G+ V + D + R++++RLI D+ G V
Sbjct: 57 QRLLELA-REALRAGRPVIV---DATNLSREERARLI---DLARRYGAPVRI-------- 101
Query: 153 SMKIFVDTDSDVRLSRRIQRDTVERGRD--IEDVLD-QYARFVKP 194
++++ +V R QR+ E VLD ARF P
Sbjct: 102 ---VYLEAPEEVLRERNAQRERSGGDPSDVPEAVLDRMLARFEPP 143
>gnl|CDD|215232 PLN02422, PLN02422, dephospho-CoA kinase.
Length = 232
Score = 33.6 bits (77), Expect = 0.15
Identities = 51/220 (23%), Positives = 86/220 (39%), Gaps = 59/220 (26%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
V+G+ GG ASGK+TV N+ + + +V+ D + + + AF
Sbjct: 3 VVGLTGGIASGKSTVSNL----FKSSGIPVVDADKVARDVLK---KGSGGWK-RVVAAFG 54
Query: 94 TELLLSDME--KLKHGQAVSIPDYDFKS-HKRKQQSRLINPSDVFILEGIL--------- 141
++LL D E + K GQ V F KR+ +RL+ P +I GI
Sbjct: 55 EDILLPDGEVDREKLGQIV------FSDPSKRQLLNRLLAP---YISSGIFWEILKLWLK 105
Query: 142 ----------VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRD--TVERGRDIEDVLDQYA 189
+L + ++ + V D + +L R + RD + E+ R
Sbjct: 106 GCKVIVLDIPLLFETKMDKWTKPVVVVWVDPETQLERLMARDGLSEEQAR---------N 156
Query: 190 RFVKPSFEEFILPSKK-YADIIIPRGGDNDVAIDLIVQHI 228
R + L K+ ADI+I DN +++ + Q
Sbjct: 157 RINA----QMPLDWKRSKADIVI----DNSGSLEDLKQQF 188
>gnl|CDD|224677 COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis
protein [Coenzyme metabolism].
Length = 161
Score = 32.3 bits (74), Expect = 0.28
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 16/63 (25%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA 91
++G+ G SGKTT+ ++ +L+ + RV V H+ HD++ D P
Sbjct: 4 ILGIVGYKNSGKTTLIEKLVRKLKARGYRVATVK-----HA--------HHDFDLDKPGK 50
Query: 92 FDT 94
DT
Sbjct: 51 -DT 52
>gnl|CDD|215920 pfam00437, T2SE, Type II/IV secretion system protein. This family
contains both type II and type IV pathway secretion
proteins from bacteria. VirB11 ATPase is a subunit of
the Agrobacterium tumefaciens transfer DNA (T-DNA)
transfer system, a type IV secretion pathway required
for delivery of T-DNA and effector proteins to plant
cells during infection.
Length = 273
Score = 32.6 bits (75), Expect = 0.32
Identities = 13/32 (40%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
Query: 35 IGVAGGTASGKTTVCNMIISRL--RDQRVVLV 64
I V+GGT SGKTT+ +++ + D+R+V +
Sbjct: 132 ILVSGGTGSGKTTLLYALLNEINTDDERIVTI 163
>gnl|CDD|112329 pfam03506, Flu_C_NS1, Influenza C non-structural protein (NS1).
The influenza C virus genome consists of seven
single-stranded RNA segments. The shortest RNA segment
encodes a 286 amino acid non-structural protein NS1.
This protein contains 6 conserved cysteines that may be
functionally important, perhaps binding to a metal ion.
Length = 162
Score = 31.6 bits (71), Expect = 0.40
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 11/61 (18%)
Query: 304 YTGVVFCR---RLCGISIIRSGESMENALRACCKGIKIGKIL--------IHREGNSGRQ 352
Y V++CR ++CG I + +E +R C + IK G ++ I + SG Q
Sbjct: 98 YAFVLYCRNTKKICGYLIAKQVAGIETGIRKCFRCIKSGFVMATDEISLIILQSIKSGAQ 157
Query: 353 L 353
L
Sbjct: 158 L 158
>gnl|CDD|200328 TIGR03819, heli_sec_ATPase, helicase/secretion neighborhood ATPase.
Members of this protein family comprise a distinct
clade of putative ATPase associated with an integral
membrane complex likely to act in pilus formation,
secretion, or conjugal transfer. The association of most
members with a nearby gene for a DEAH-box helicase
suggests a role in conjugal transfer.
Length = 340
Score = 32.7 bits (75), Expect = 0.42
Identities = 14/29 (48%), Positives = 23/29 (79%), Gaps = 1/29 (3%)
Query: 37 VAGGTASGKTTVCNMIISRLR-DQRVVLV 64
V+GGT SGKTT+ + +++ + D+R+VLV
Sbjct: 183 VSGGTGSGKTTLLSALLALVPPDERIVLV 211
>gnl|CDD|238977 cd02019, NK, Nucleoside/nucleotide kinase (NK) is a protein
superfamily consisting of multiple families of enzymes
that share structural similarity and are functionally
related to the catalysis of the reversible phosphate
group transfer from nucleoside triphosphates to
nucleosides/nucleotides, nucleoside monophosphates, or
sugars. Members of this family play a wide variety of
essential roles in nucleotide metabolism, the
biosynthesis of coenzymes and aromatic compounds, as
well as the metabolism of sugar and sulfate.
Length = 69
Score = 30.0 bits (68), Expect = 0.45
Identities = 11/31 (35%), Positives = 20/31 (64%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64
+I + GG+ SGK+TV + +L + VV++
Sbjct: 1 IIAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31
>gnl|CDD|223707 COG0634, Hpt, Hypoxanthine-guanine phosphoribosyltransferase
[Nucleotide transport and metabolism].
Length = 178
Score = 31.7 bits (73), Expect = 0.46
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFL 400
SG I + L DI R VL+++ I+ SG + K L+ +G I L
Sbjct: 78 SGEVKILKDLDEDIKGRDVLIVEDIIDSGLTLSKVRDLLKERGAKSVRIATL 129
>gnl|CDD|217424 pfam03205, MobB, Molybdopterin guanine dinucleotide synthesis
protein B. This protein contains a P-loop.
Length = 126
Score = 31.2 bits (71), Expect = 0.47
Identities = 11/34 (32%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLV 64
++ V G SGKTT+ +++ L+ + RV +V
Sbjct: 1 PIVLVVGPKDSGKTTLIRKLLNYLKRRGYRVAVV 34
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 32.3 bits (74), Expect = 0.52
Identities = 11/31 (35%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
Query: 35 IGVAGGTASGKTTVCNMIISRL-RDQRVVLV 64
I ++GGT SGKTT ++ + +D+R++ +
Sbjct: 147 IIISGGTGSGKTTFLKSLVDEIPKDERIITI 177
>gnl|CDD|105491 PRK12269, PRK12269, bifunctional cytidylate kinase/ribosomal
protein S1; Provisional.
Length = 863
Score = 32.4 bits (73), Expect = 0.58
Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHD 83
+I + G SGK++VC ++ SRL Q +N SFY + T L+ + +
Sbjct: 36 IIALDGPAGSGKSSVCRLLASRLGAQ---CLNTGSFYRAFTLAALRRVSE 82
>gnl|CDD|184377 PRK13894, PRK13894, conjugal transfer ATPase TrbB; Provisional.
Length = 319
Score = 32.0 bits (73), Expect = 0.65
Identities = 16/34 (47%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
Query: 35 IGVAGGTASGKTTVCNMIISRLRDQ----RVVLV 64
I V GGT SGKTT+ N II+ + Q RV ++
Sbjct: 151 ILVIGGTGSGKTTLVNAIINEMVIQDPTERVFII 184
>gnl|CDD|233291 TIGR01143, murF,
UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine
ligase. This family consists of the strictly bacterial
MurF gene of peptidoglycan biosynthesis. This enzyme is
almost always
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,
6-diaminopimelate--D-alanyl-D-alanyl ligase, but in a
few species, MurE adds lysine rather than
diaminopimelate. This enzyme acts on the product from
MurE activity, and so is also subfamily rather than
equivalog. Staphylococcus aureus is an example of
species in this MurF protein would differ [Cell
envelope, Biosynthesis and degradation of murein
sacculus and peptidoglycan].
Length = 417
Score = 31.5 bits (72), Expect = 0.97
Identities = 13/39 (33%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69
VIG+ G +SGKTT M+ + L + V+ +F
Sbjct: 73 SGKVIGITG--SSGKTTTKEMLAAILSHKYKVVATPGNF 109
>gnl|CDD|223360 COG0283, Cmk, Cytidylate kinase [Nucleotide transport and
metabolism].
Length = 222
Score = 31.0 bits (71), Expect = 1.00
Identities = 32/171 (18%), Positives = 56/171 (32%), Gaps = 46/171 (26%)
Query: 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDH 88
K +I + G SGK+TV ++ +L ++ + Y ++ L+ H + D
Sbjct: 1 MKAAIIIAIDGPAGSGKSTVAKILAEKL---GFHYLDTGAMYRAVALAALK--HGVDLDD 55
Query: 89 PDAFDTELLLSDMEKLKH-------------------GQAVS----IPDYDFKSHKRKQQ 125
DA D+ + G A S IP + + K Q
Sbjct: 56 EDALVALAKELDISFVNDDRVFLNGEDVSEEIRTEEVGNAASKVAAIP--EVREALVKLQ 113
Query: 126 SRLINPSDVFILEGILVLHDPRVRDLMS-------MKIFVDTDSDVRLSRR 169
+ +G RD+ + +KIF+ + R RR
Sbjct: 114 RAFAKNGPGIVADG---------RDIGTVVFPDAELKIFLTASPEERAERR 155
>gnl|CDD|223841 COG0770, MurF, UDP-N-acetylmuramyl pentapeptide synthase [Cell
envelope biogenesis, outer membrane].
Length = 451
Score = 31.5 bits (72), Expect = 1.1
Identities = 11/39 (28%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69
VI + G ++GKTT M+ + L + V +F
Sbjct: 102 NAKVIAITG--SNGKTTTKEMLAAILSTKGKVHATPGNF 138
>gnl|CDD|161676 TIGR00041, DTMP_kinase, thymidylate kinase. Function:
phosphorylation of DTMP to form DTDP in both de novo and
salvage pathways of DTTP synthesis. Catalytic activity:
ATP + thymidine 5'-phosphate = ADP + thymidine
5'-diphosphate [Purines, pyrimidines, nucleosides, and
nucleotides, Nucleotide and nucleoside
interconversions].
Length = 195
Score = 30.8 bits (70), Expect = 1.1
Identities = 36/150 (24%), Positives = 63/150 (42%), Gaps = 21/150 (14%)
Query: 43 SGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLL-- 98
+GKTT N++ L++ V+ + + EK++ L D P E LL
Sbjct: 14 AGKTTQANLLKKLLQENGYDVLFTREPG--GTPIGEKIRELLLNENDEPLTDKAEALLFA 71
Query: 99 SDME---------KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVR 149
+D L G+ V Y F S + +R I+ +LE L++ +
Sbjct: 72 ADRHEHLEDKIKPALAEGKLVISDRYVFSSIAYQGGARGIDED--LVLE----LNEDALG 125
Query: 150 DLMSMKIFVDTDSDVRLSRRIQRDTVERGR 179
D+ + I++D D +V L R +R ++R
Sbjct: 126 DMPDLTIYLDIDPEVALERLRKRGELDREE 155
>gnl|CDD|184807 PRK14730, coaE, dephospho-CoA kinase; Provisional.
Length = 195
Score = 30.7 bits (70), Expect = 1.2
Identities = 11/18 (61%), Positives = 14/18 (77%)
Query: 35 IGVAGGTASGKTTVCNMI 52
IG+ GG ASGK+TV N +
Sbjct: 4 IGLTGGIASGKSTVGNYL 21
>gnl|CDD|219519 pfam07693, KAP_NTPase, KAP family P-loop domain. The KAP (after
Kidins220/ARMS and PifA) family of predicted NTPases
are sporadically distributed across a wide phylogenetic
range in bacteria and in animals. Many of the
prokaryotic KAP NTPases are encoded in plasmids and
tend to undergo disruption to form pseudogenes. A
unique feature of all eukaryotic and certain bacterial
KAP NTPases is the presence of two or four
transmembrane helices inserted into the P-loop NTPase
domain. These transmembrane helices anchor KAP NTPases
in the membrane such that the P-loop domain is located
on the intracellular side.
Length = 301
Score = 30.8 bits (70), Expect = 1.4
Identities = 11/30 (36%), Positives = 17/30 (56%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRV 61
FVIG+ G SGKT+ N++ L++
Sbjct: 20 GFVIGLYGAWGSGKTSFLNLLEDELKEFPE 49
>gnl|CDD|172360 PRK13833, PRK13833, conjugal transfer protein TrbB; Provisional.
Length = 323
Score = 30.9 bits (70), Expect = 1.4
Identities = 13/33 (39%), Positives = 22/33 (66%), Gaps = 4/33 (12%)
Query: 35 IGVAGGTASGKTTVCNMIISRL----RDQRVVL 63
I ++GGT SGKTT+ N +I+ + + R+V+
Sbjct: 147 IVISGGTGSGKTTLANAVIAEIVASAPEDRLVI 179
>gnl|CDD|238987 cd02029, PRK_like, Phosphoribulokinase-like (PRK-like) is a family
of proteins similar to phosphoribulokinase (PRK), the
enzyme involved in the Benson-Calvin cycle in
chloroplasts or photosynthetic prokaryotes. PRK
catalyzes the phosphorylation of D-ribulose 5-phosphate
to form D-ribulose 1, 5-biphosphate, using ATP and NADPH
produced by the primary reactions of photosynthesis.
Length = 277
Score = 30.9 bits (70), Expect = 1.4
Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 4/106 (3%)
Query: 128 LINPSDVFILEGI---LVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDV 184
L +D+ EG+ +V V + + V ++ ++I RDT ERG E V
Sbjct: 114 LPEDTDLLFYEGLHGGVVTEGYNVAQHADLLVGVVPIINLEWIQKIHRDTAERGYSAEAV 173
Query: 185 LDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILT 230
+D R + P + +I P DI R D + I + I T
Sbjct: 174 MDTILRRM-PDYINYICPQFSRTDINFQRVPTVDTSNPFIARDIPT 218
>gnl|CDD|235210 PRK04040, PRK04040, adenylate kinase; Provisional.
Length = 188
Score = 29.9 bits (68), Expect = 1.8
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65
V+ V G GKTTV N + +L++ +VN
Sbjct: 2 MKVVVVTGVPGVGKTTVLNKALEKLKE-DYKIVN 34
>gnl|CDD|234868 PRK00934, PRK00934, ribose-phosphate pyrophosphokinase;
Provisional.
Length = 285
Score = 30.3 bits (69), Expect = 1.9
Identities = 9/31 (29%), Positives = 20/31 (64%)
Query: 361 DISSRHVLLLDPILASGNSAVKAISLILSKG 391
D+ + VL++D I+++G + AI ++ +G
Sbjct: 201 DVKGKDVLIVDDIISTGGTMATAIKILKEQG 231
>gnl|CDD|236907 PRK11410, PRK11410, hypothetical protein; Provisional.
Length = 561
Score = 30.4 bits (69), Expect = 2.1
Identities = 18/39 (46%), Positives = 20/39 (51%), Gaps = 12/39 (30%)
Query: 259 LIRDVTTTTHDFVFY----ADRLI------RLVVEHGLG 287
L+RDV T DFVFY ADRL R+ EH L
Sbjct: 77 LLRDVLT--EDFVFYYENHADRLGLEGSLRRIAYEHDLT 113
>gnl|CDD|150280 pfam09551, Spore_II_R, Stage II sporulation protein R (spore_II_R).
SpoIIR is designated stage II sporulation protein R. A
comparative genome analysis of all sequenced genomes of
Firmicutes shows that the proteins are strictly
conserved among the sub-set of endospore-forming
species. SpoIIR is a signalling protein that links the
activation of sigma E to the transcriptional activity of
sigma F during sporulation.
Length = 132
Score = 29.1 bits (66), Expect = 2.6
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 11/76 (14%)
Query: 147 RVRD--LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ------YARFVKPSFEE 198
+VRD L + ++ + +RR+ ++ + +IE++ ++ Y VK +
Sbjct: 25 KVRDEVLEYLTPKLEDSKSIEEARRVIKENLP---EIEEIAEKVIKEEGYDYPVKVELGK 81
Query: 199 FILPSKKYADIIIPRG 214
F P+K Y +I +P G
Sbjct: 82 FSFPTKLYGNITLPAG 97
>gnl|CDD|178608 PLN03046, PLN03046, D-glycerate 3-kinase; Provisional.
Length = 460
Score = 30.3 bits (68), Expect = 2.7
Identities = 26/99 (26%), Positives = 40/99 (40%), Gaps = 16/99 (16%)
Query: 32 PFVIGVAGGTASGKTTVCNMI--ISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYN---- 85
P VIG + GKTT+ + + R+ ++ ++ D FY LT E L + N
Sbjct: 212 PLVIGFSAPQGCGKTTLVFALDYLFRVTGRKSATLSIDDFY--LTAEGQAELRERNPGNA 269
Query: 86 --------FDHPDAFDTELLLSDMEKLKHGQAVSIPDYD 116
H F E L + + K G + +P YD
Sbjct: 270 LLELRGNAGSHDLQFSVETLEALSKLTKEGIKMKVPRYD 308
>gnl|CDD|215925 pfam00448, SRP54, SRP54-type protein, GTPase domain. This family
includes relatives of the G-domain of the SRP54 family
of proteins.
Length = 196
Score = 29.4 bits (67), Expect = 2.8
Identities = 16/40 (40%), Positives = 23/40 (57%), Gaps = 2/40 (5%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
P VI + G SGKTT + + L+ Q +V+LV D+F
Sbjct: 1 PNVILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTF 40
>gnl|CDD|232857 TIGR00176, mobB, molybdopterin-guanine dinucleotide biosynthesis
protein MobB. This molybdenum cofactor biosynthesis
enzyme is similar to the urease accessory protein UreG
and to the hydrogenase accessory protein HypB, both GTP
hydrolases involved in loading nickel into the
metallocenters of their respective target enzymes
[Biosynthesis of cofactors, prosthetic groups, and
carriers, Molybdopterin].
Length = 155
Score = 29.3 bits (66), Expect = 2.9
Identities = 14/58 (24%), Positives = 24/58 (41%), Gaps = 15/58 (25%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHP 89
V+ + G SGKTT+ ++ L+ + RV + D HD++ D
Sbjct: 1 VLQIVGPKNSGKTTLIERLVKALKARGYRVATIKHDH-------------HDFDIDKN 45
>gnl|CDD|219727 pfam08145, BOP1NT, BOP1NT (NUC169) domain. This N terminal domain
is found in BOP1-like WD40 proteins.
Length = 259
Score = 29.5 bits (67), Expect = 3.3
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 147 RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFV 192
+ D ++ + V TD D+ L RRIQ +G +D D Y +V
Sbjct: 40 TIYDKLTGRDVVLTDEDLELIRRIQ-----KGEVPDDGYDPYEPYV 80
>gnl|CDD|222104 pfam13401, AAA_22, AAA domain.
Length = 124
Score = 28.4 bits (64), Expect = 3.4
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 3/33 (9%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65
+ G +G SGKTT+ + +L ++RVV V
Sbjct: 8 VLTGESG---SGKTTLLRRLARQLPNRRVVYVE 37
>gnl|CDD|221803 pfam12846, AAA_10, AAA-like domain. This family of domains contain
a P-loop motif that is characteristic of the AAA
superfamily. Many of the proteins in this family are
conjugative transfer proteins.
Length = 316
Score = 29.7 bits (67), Expect = 3.5
Identities = 30/172 (17%), Positives = 60/172 (34%), Gaps = 23/172 (13%)
Query: 37 VAGGTASGKTTVCNMIISRL--RDQRVVLVNQDSFYHSLTDE------KLQNLHDYNFDH 88
+ G + SGK+T+ ++ RL R RV++++ Y L L + +
Sbjct: 6 IVGPSGSGKSTLLKLLALRLLARGGRVIVIDPKGEYSGLARALGGEVIDLGPGSGISLNP 65
Query: 89 PDAFDTELLLSDMEKLKHGQAVSI----------PDYDFKSHKRKQQSRLINPSDVFILE 138
D F T ++E H + + + D + R + ++ E
Sbjct: 66 LDIFPTGEDAEELEADAHARKLDLLLALLELAALLGRDLTPREETALDRALRA--LYEEE 123
Query: 139 GILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYAR 190
GI P + DL+ + + D + D E ++ L++
Sbjct: 124 GIDRDAYPTLSDLLE---ALRDEPDELREAALVDDEEEAAEELALALERLLD 172
>gnl|CDD|223626 COG0552, FtsY, Signal recognition particle GTPase [Intracellular
trafficking and secretion].
Length = 340
Score = 29.5 bits (67), Expect = 3.6
Identities = 16/43 (37%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
K+PFVI G GKTT + L+ Q V+L D+F
Sbjct: 136 EKKPFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTF 178
>gnl|CDD|185050 PRK15094, PRK15094, magnesium/cobalt efflux protein CorC;
Provisional.
Length = 292
Score = 29.4 bits (66), Expect = 3.9
Identities = 12/29 (41%), Positives = 20/29 (68%)
Query: 124 QQSRLINPSDVFILEGILVLHDPRVRDLM 152
+Q+ LI+ +LEG++ + D RVRD+M
Sbjct: 45 EQNDLIDEDTRDMLEGVMDIADQRVRDIM 73
>gnl|CDD|223455 COG0378, HypB, Ni2+-binding GTPase involved in regulation of
expression and maturation of urease and hydrogenase
[Posttranslational modification, protein turnover,
chaperones / Transcription].
Length = 202
Score = 29.1 bits (66), Expect = 4.0
Identities = 10/36 (27%), Positives = 15/36 (41%)
Query: 24 STTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
+ IGV G SGKT + + L+D+
Sbjct: 5 RLAEKNRPMLRIGVGGPPGSGKTALIEKTLRALKDE 40
>gnl|CDD|217625 pfam03580, Herpes_UL14, Herpesvirus UL14-like protein. This is a
family of Herpesvirus proteins including UL14. UL14
protein is a minor component of the virion tegument and
is expressed late in infection. UL14 protein can
influence the intracellular localisation patterns of a
number of proteins belonging to the capsid or the DNA
encapsidation machinery.
Length = 149
Score = 28.5 bits (64), Expect = 4.1
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Query: 165 RLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEE 198
+ +RRIQ VE +LD R+++P F E
Sbjct: 66 QKARRIQA-RVEEQAARRLILDANRRYLRPDFLE 98
>gnl|CDD|179560 PRK03333, coaE, dephospho-CoA kinase/protein folding accessory
domain-containing protein; Provisional.
Length = 395
Score = 29.6 bits (67), Expect = 4.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 4/33 (12%)
Query: 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67
IG+ GG +GK+TV +RL + V+V+ D
Sbjct: 4 IGLTGGIGAGKSTVA----ARLAELGAVVVDAD 32
>gnl|CDD|238979 cd02021, GntK, Gluconate kinase (GntK) catalyzes the phosphoryl
transfer from ATP to gluconate. The resulting product
gluconate-6-phoshate is an important precursor of
gluconate metabolism. GntK acts as a dimmer composed of
two identical subunits.
Length = 150
Score = 28.4 bits (64), Expect = 4.5
Identities = 11/25 (44%), Positives = 15/25 (60%), Gaps = 3/25 (12%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLR 57
V+GV+G SGK+TV + RL
Sbjct: 3 VVMGVSG---SGKSTVGKALAERLG 24
>gnl|CDD|132956 cd06625, STKc_MEKK3_like, Catalytic domain of MAP/ERK kinase kinase
3-like Protein Serine/Threonine Kinases.
Serine/threonine kinases (STKs), MAP/ERK kinase kinase 3
(MEKK3)-like subfamily, catalytic (c) domain. STKs
catalyze the transfer of the gamma-phosphoryl group from
ATP to serine/threonine residues on protein substrates.
The MEKK3-like subfamily is part of a larger superfamily
that includes the catalytic domains of other protein
STKs, protein tyrosine kinases, RIO kinases,
aminoglycoside phosphotransferase, choline kinase, and
phosphoinositide 3-kinase. This subfamily is composed of
MEKK3, MEKK2, and related proteins, all containing an
N-terminal PB1 domain, which mediates oligomerization,
and a C-terminal catalytic domain. MEKK2 and MEKK3 are
mitogen-activated protein kinase (MAPK) kinase kinases
(MAPKKKs or MKKKs or MAP3Ks), proteins that
phosphorylate and activate MAPK kinases (MAPKKs or MKKs
or MAP2Ks), which in turn phosphorylate and activate
MAPKs during signaling cascades that are important in
mediating cellular responses to extracellular signals.
MEKK2 and MEKK3 activate MEK5 (also called MKK5), which
activates extracellular signal-regulated kinase 5
(ERK5). The ERK5 cascade plays roles in promoting cell
proliferation, differentiation, neuronal survival, and
neuroprotection. MEKK3 plays an essential role in
embryonic angiogenesis and early heart development.
MEKK2 and MEKK3 can also activate the MAPKs, c-Jun
N-terminal kinase (JNK) and p38, through their
respective MAPKKs.
Length = 263
Score = 29.0 bits (65), Expect = 4.6
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 7/43 (16%)
Query: 136 ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL-----SRRIQ 171
ILEG+ LH + RD+ I D+ +V+L S+R+Q
Sbjct: 113 ILEGVEYLHSNMIVHRDIKGANILRDSAGNVKLGDFGASKRLQ 155
>gnl|CDD|220466 pfam09909, DUF2138, Uncharacterized protein conserved in bacteria
(DUF2138). This domain, found in various hypothetical
prokaryotic proteins, has no known function.
Length = 552
Score = 29.3 bits (66), Expect = 4.9
Identities = 18/38 (47%), Positives = 20/38 (52%), Gaps = 12/38 (31%)
Query: 259 LIRDVTTTTHDFVFY----ADRLI------RLVVEHGL 286
L+RDV T DFVFY ADRL R+ EH L
Sbjct: 68 LLRDVLT--EDFVFYYENHADRLGLEGSLRRIAYEHDL 103
>gnl|CDD|235871 PRK06835, PRK06835, DNA replication protein DnaC; Validated.
Length = 329
Score = 29.1 bits (66), Expect = 5.0
Identities = 16/64 (25%), Positives = 27/64 (42%), Gaps = 2/64 (3%)
Query: 39 GGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTEL 96
G T +GKT + N I L D+ V+ D L + + N + + + +L
Sbjct: 190 GNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDL 249
Query: 97 LLSD 100
L+ D
Sbjct: 250 LIID 253
>gnl|CDD|223362 COG0285, FolC, Folylpolyglutamate synthase [Coenzyme metabolism].
Length = 427
Score = 29.2 bits (66), Expect = 5.2
Identities = 15/32 (46%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
P K P VI VAG T +GK + C + S LR+
Sbjct: 40 PQKSPPVIHVAG-T-NGKGSTCAFLESILREA 69
>gnl|CDD|233210 TIGR00959, ffh, signal recognition particle protein. This model
represents Ffh (Fifty-Four Homolog), the protein
component that forms the bacterial (and organellar)
signal recognition particle together with a 4.5S RNA.
Ffh is a GTPase homologous to eukaryotic SRP54 and also
to the GTPase FtsY (TIGR00064) that is the receptor for
the signal recognition particle [Protein fate, Protein
and peptide secretion and trafficking].
Length = 428
Score = 29.2 bits (66), Expect = 5.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 19 SASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRD---QRVVLVNQD 67
+ S + K P VI + G SGKTT C + L+ ++V+LV D
Sbjct: 86 GGENASLNLAKKPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137
>gnl|CDD|238978 cd02020, CMPK, Cytidine monophosphate kinase (CMPK) catalyzes the
reversible phosphorylation of cytidine monophosphate
(CMP) to produce cytidine diphosphate (CDP), using ATP
as the preferred phosphoryl donor.
Length = 147
Score = 28.2 bits (64), Expect = 5.2
Identities = 37/178 (20%), Positives = 64/178 (35%), Gaps = 61/178 (34%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
+I + G SGK+TV ++ +L + D
Sbjct: 1 IIAIDGPAGSGKSTVAKLLAKKL----------------------------GLPY---LD 29
Query: 94 TELLLSDMEKLKHGQAVS-IPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM 152
T + E K V+ IP+ K+ +Q+ P +LEG RD+
Sbjct: 30 TGGI-RTEEVGKLASEVAAIPEVR-KALDERQRELAKKPG--IVLEG---------RDIG 76
Query: 153 SM-------KIFVDTDSDVRLSRRIQRDTVER-GRDIEDVLDQ--------YARFVKP 194
++ KIF+ +VR RR ++ + G D+E++L + R+V P
Sbjct: 77 TVVFPDADLKIFLTASPEVRAKRRAKQLQAKGEGVDLEEILAEIIERDERDSTRYVAP 134
>gnl|CDD|238835 cd01672, TMPK, Thymidine monophosphate kinase (TMPK), also known
as thymidylate kinase, catalyzes the phosphorylation of
thymidine monophosphate (TMP) to thymidine diphosphate
(TDP) utilizing ATP as its preferred phophoryl donor.
TMPK represents the rate-limiting step in either de
novo or salvage biosynthesis of thymidine triphosphate
(TTP).
Length = 200
Score = 28.8 bits (65), Expect = 5.4
Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 2/34 (5%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLV 64
I G +GKTT+ ++ RL + VVL
Sbjct: 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVVLT 34
>gnl|CDD|237808 PRK14734, coaE, dephospho-CoA kinase; Provisional.
Length = 200
Score = 28.7 bits (64), Expect = 5.7
Identities = 35/167 (20%), Positives = 68/167 (40%), Gaps = 29/167 (17%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAF 92
IG+ GG SGK+TV L + ++V+ D + + L + +AF
Sbjct: 2 LRIGLTGGIGSGKSTVA----DLLSSEGFLIVDADQVARDIVEPGQPALAEL----AEAF 53
Query: 93 DTELLLSD---------------MEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFIL 137
++L D E+ A++ P ++ +R ++R + V +
Sbjct: 54 GDDILNPDGTLDRAGLAAKAFASPEQTALLNAITHPRIAEETARRFNEAR-AQGAKVAVY 112
Query: 138 EGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDV 184
+ L++ R M + + VD D + R+ R +++ RG D +D
Sbjct: 113 DMPLLVEKGLDRK-MDLVVVVDVDVEERVRRLVEK----RGLDEDDA 154
>gnl|CDD|215125 PLN02200, PLN02200, adenylate kinase family protein.
Length = 234
Score = 28.7 bits (64), Expect = 6.3
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 7/45 (15%)
Query: 16 SLQSASSESTTMPT-------KQPFVIGVAGGTASGKTTVCNMII 53
+S S+E T+ K PF+ V GG SGK T C I+
Sbjct: 20 IWESFSTEIITLEERGSSSKEKTPFITFVLGGPGSGKGTQCEKIV 64
>gnl|CDD|129547 TIGR00455, apsK, adenylylsulfate kinase (apsK). This protein,
adenylylsulfate kinase, is often found as a fusion
protein with sulfate adenylyltransferase. Important
residue (active site in E.coli) is residue 100 of the
seed alignment [Central intermediary metabolism, Sulfur
metabolism].
Length = 184
Score = 28.2 bits (63), Expect = 6.4
Identities = 14/44 (31%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLT 74
VI + G + SGK+T+ N + +L + RV +++ D+ H L
Sbjct: 19 VVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLN 62
>gnl|CDD|233265 TIGR01085, murE, UDP-N-acetylmuramyl-tripeptide synthetase. Most
members of this family are EC 6.3.2.13,
UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2,
6-diaminopimelate ligase. An exception is Staphylococcus
aureus, in which diaminopimelate is replaced by lysine
in the peptidoglycan and MurE is EC 6.3.2.7. The
Mycobacteria, part of the closest neighboring branch
outside of the low-GC Gram-positive bacteria, use
diaminopimelate. A close homolog, scoring just below the
trusted cutoff, is found (with introns) in Arabidopsis
thaliana. Its role is unknown [Cell envelope,
Biosynthesis and degradation of murein sacculus and
peptidoglycan].
Length = 464
Score = 28.8 bits (65), Expect = 6.4
Identities = 21/80 (26%), Positives = 36/80 (45%), Gaps = 7/80 (8%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYN 85
P+K+ VIGV G +GKTT ++I LR + L+ + + L L +
Sbjct: 81 PSKKLKVIGVTG--TNGKTTTTSLIAQLLRLLGKKTGLIG--TIGYRLGGNDLIK-NPAA 135
Query: 86 FDHPDAFDTELLLSDMEKLK 105
P+A + L++M +
Sbjct: 136 LTTPEALTLQSTLAEMVEAG 155
>gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular
activities. AAA - ATPases associated with a variety of
cellular activities. This profile/alignment only
detects a fraction of this vast family. The poorly
conserved N-terminal helix is missing from the
alignment.
Length = 148
Score = 28.1 bits (62), Expect = 6.5
Identities = 12/51 (23%), Positives = 21/51 (41%), Gaps = 2/51 (3%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQ 79
VI + G SGKTT+ + L V+ ++ + + D+ L
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL 51
>gnl|CDD|214940 smart00962, SRP54, SRP54-type protein, GTPase domain. This entry
represents the GTPase domain of the 54 kDa SRP54
component, a GTP-binding protein that interacts with
the signal sequence when it emerges from the ribosome.
SRP54 of the signal recognition particle has a
three-domain structure: an N-terminal helical bundle
domain, a GTPase domain, and the M-domain that binds
the 7s RNA and also binds the signal sequence. The
extreme C-terminal region is glycine-rich and lower in
complexity and poorly conserved between species. The
GTPase domain is evolutionary related to P-loop NTPase
domains found in a variety of other proteins.
Length = 197
Score = 28.1 bits (64), Expect = 6.7
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ---RVVLVNQDSF 69
P VI + G GKTT + +RL+ + +V+LV D+F
Sbjct: 1 PGVILLVGPNGVGKTTTIAKLAARLKLKGGKKVLLVAADTF 41
>gnl|CDD|200550 cd10924, CE4_COG4878, Putative NodB-like catalytic domain of
uncharacterized proteins found in bacteria. The family
corresponds to a group of uncharacterized bacterial
proteins with high sequence similarity to the catalytic
domain of the six-stranded barrel rhizobial NodB-like
proteins, which remove N-linked or O-linked acetyl
groups from cell wall polysaccharides and belong to the
larger carbohydrate esterase 4 (CE4) superfamily.
Length = 273
Score = 28.5 bits (64), Expect = 7.2
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 6/33 (18%)
Query: 392 VPESNIIFLNLIAAPQGIHAICKRFPKIKIVTS 424
VP SNI+ + +G A+ K FP +K + S
Sbjct: 150 VPPSNIL------SQEGREALKKAFPTLKTIAS 176
>gnl|CDD|215132 PLN02238, PLN02238, hypoxanthine phosphoribosyltransferase.
Length = 189
Score = 28.1 bits (63), Expect = 7.2
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 358 LPADISSRHVLLLDPILASGNSAVKAISLILSKGV 392
L D+ +HVLL++ I+ +GN+ ++ + +KG
Sbjct: 91 LKIDVKGKHVLLVEDIVDTGNTLSALVAHLEAKGA 125
>gnl|CDD|237730 PRK14493, PRK14493, putative bifunctional molybdopterin-guanine
dinucleotide biosynthesis protein MobB/MoaE;
Provisional.
Length = 274
Score = 28.4 bits (64), Expect = 8.0
Identities = 11/29 (37%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ-RV 61
V+ + G A+GKTT+ ++ RL + RV
Sbjct: 3 VLSIVGYKATGKTTLVERLVDRLSGRGRV 31
>gnl|CDD|200466 cd11327, AmyAc_Glg_debranch_2, Alpha amylase catalytic domain found
in glycogen debranching enzymes. Debranching enzymes
facilitate the breakdown of glycogen through
glucosyltransferase and glucosidase activity. These
activities are performed by a single enzyme in mammals,
yeast, and some bacteria, but by two distinct enzymes in
Escherichia coli and other bacteria. Debranching enzymes
perform two activities, 4-alpha-D-glucanotransferase (EC
2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33).
4-alpha-D-glucanotransferase catalyzes the
endohydrolysis of 1,6-alpha-D-glucoside linkages at
points of branching in chains of 1,4-linked
alpha-D-glucose residues. Amylo-alpha-1,6-glucosidase
catalyzes the endohydrolysis of 1,6-alpha-D-glucoside
linkages at points of branching in chains of 1,4-linked
alpha-D-glucose residues. The catalytic triad (DED),
which is highly conserved in other debranching enzymes,
is not present in this group. The Alpha-amylase family
comprises the largest family of glycoside hydrolases
(GH), with the majority of enzymes acting on starch,
glycogen, and related oligo- and polysaccharides. These
proteins catalyze the transformation of alpha-1,4 and
alpha-1,6 glucosidic linkages with retention of the
anomeric center. The protein is described as having 3
domains: A, B, C. A is a (beta/alpha) 8-barrel; B is a
loop between the beta 3 strand and alpha 3 helix of A; C
is the C-terminal extension characterized by a Greek
key. The majority of the enzymes have an active site
cleft found between domains A and B where a triad of
catalytic residues (Asp, Glu and Asp) performs
catalysis. Other members of this family have lost the
catalytic activity as in the case of the human 4F2hc, or
only have 2 residues that serve as the catalytic
nucleophile and the acid/base, such as Thermus A4
beta-galactosidase with 2 Glu residues (GH42) and human
alpha-galactosidase with 2 Asp residues (GH31). The
family members are quite extensive and include: alpha
amylase, maltosyltransferase, cyclodextrin
glycotransferase, maltogenic amylase, neopullulanase,
isoamylase, 1,4-alpha-D-glucan maltotetrahydrolase,
4-alpha-glucotransferase, oligo-1,6-glucosidase,
amylosucrase, sucrose phosphorylase, and amylomaltase.
Length = 478
Score = 28.7 bits (65), Expect = 8.2
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 300 TGSVYTGVVFCRRLCGI-SIIRSGESMEN 327
TGS +F RL GI S+IR E+M+
Sbjct: 453 TGSEEMDNIFVNRL-GINSLIR--EAMQA 478
>gnl|CDD|224976 COG2065, PyrR, Pyrimidine operon attenuation protein/uracil
phosphoribosyltransferase [Nucleotide transport and
metabolism].
Length = 179
Score = 28.0 bits (63), Expect = 8.8
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 358 LPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
LP DI+ + V+L+D +L +G + A+ ++ G P
Sbjct: 90 LPFDITGKRVILVDDVLYTGRTIRAALDALVDYGRPAK 127
>gnl|CDD|224930 COG2019, AdkA, Archaeal adenylate kinase [Nucleotide transport
and metabolism].
Length = 189
Score = 27.7 bits (62), Expect = 8.9
Identities = 10/34 (29%), Positives = 16/34 (47%)
Query: 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV 62
K V+ + G GKTTV + + L ++V
Sbjct: 1 MKGRKVVVITGVPGVGKTTVLKIALKELVKHKIV 34
>gnl|CDD|233461 TIGR01547, phage_term_2, phage terminase, large subunit, PBSX
family. This model detects members of a highly
divergent family of the large subunit of phage
terminase. All members are encoded by phage genomes or
within prophage regions of bacterial genomes. This is a
distinct family from pfam03354 [Mobile and
extrachromosomal element functions, Prophage functions].
Length = 396
Score = 28.1 bits (63), Expect = 9.9
Identities = 24/128 (18%), Positives = 40/128 (31%), Gaps = 38/128 (29%)
Query: 39 GGTASGKTTVCN----MIISRLRDQRVVLV---NQDSFYHSLTDEKLQNLHDYNFDHPDA 91
GG SGKT ++ + Q+ +L Q+S S+ + L +
Sbjct: 8 GGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN---- 63
Query: 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDL 151
Y+FK K + +++N FI +G L+D L
Sbjct: 64 -----------------------YEFKKSKSSMEIKILNTGKKFIFKG---LNDKP-NKL 96
Query: 152 MSMKIFVD 159
S
Sbjct: 97 KSGAGIAI 104
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.267 0.0889 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 24,463,786
Number of extensions: 2479894
Number of successful extensions: 2772
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2720
Number of HSP's successfully gapped: 138
Length of query: 473
Length of database: 10,937,602
Length adjustment: 100
Effective length of query: 373
Effective length of database: 6,502,202
Effective search space: 2425321346
Effective search space used: 2425321346
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (27.0 bits)