RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= 035513
(473 letters)
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P;
2.25A {Thermus thermophilus} PDB: 3asy_A*
Length = 211
Score = 314 bits (808), Expect = e-106
Identities = 94/208 (45%), Positives = 132/208 (63%), Gaps = 1/208 (0%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M +PFVIG+AGGTASGKTT+ + L +RV L+ D +Y L L+ N+
Sbjct: 1 MSAPKPFVIGIAGGTASGKTTLAQALARTL-GERVALLPMDHYYKDLGHLPLEERLRVNY 59
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP 146
DHPDAFD L L + L G V +P YDF+++ R + + P+ V ILEGILVL+
Sbjct: 60 DHPDAFDLALYLEHAQALLRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPK 119
Query: 147 RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKY 206
+RDLM +K+FVD D+D R RR++RD +ERGR +E V+ QY VKP F+ P+K+Y
Sbjct: 120 ELRDLMDLKVFVDADADERFIRRLKRDVLERGRSLEGVVAQYLEQVKPMHLHFVEPTKRY 179
Query: 207 ADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
AD+I+PRGG N VA++++ L +L +
Sbjct: 180 ADVIVPRGGQNPVALEMLAAKALARLAR 207
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding,
nucleoside kinase, nucleotide-binding; 2.50A {Homo
sapiens} PDB: 2uvq_A*
Length = 245
Score = 292 bits (749), Expect = 2e-97
Identities = 115/234 (49%), Positives = 158/234 (67%), Gaps = 11/234 (4%)
Query: 19 SASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR-------DQRVVLVNQDSFYH 71
+E+ + +PF+IGV+GGTASGK+TVC I+ L ++VV+++QD FY
Sbjct: 12 DLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELLGQNEVEQRQRKVVILSQDRFYK 71
Query: 72 SLTDEKLQNLH--DYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLI 129
LT E+ YNFDHPDAFD +L+ ++ + G+ V +P YDF +H R ++ ++
Sbjct: 72 VLTAEQKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTVEVPTYDFVTHSRLPETTVV 131
Query: 130 NPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYA 189
P+DV + EGILV + +RD+ +++FVDTDSDVRLSRR+ RD V RGRD+E +L QY
Sbjct: 132 YPADVVLFEGILVFYSQEIRDMFHLRLFVDTDSDVRLSRRVLRD-VRRGRDLEQILTQYT 190
Query: 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSN 243
FVKP+FEEF LP+KKYAD+IIPRG DN VAI+LIVQHI L D+CK +
Sbjct: 191 TFVKPAFEEFCLPTKKYADVIIPRGVDNMVAINLIVQHIQDIL-NGDICKWHRG 243
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD,
transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP:
c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Length = 252
Score = 289 bits (741), Expect = 4e-96
Identities = 116/216 (53%), Positives = 151/216 (69%), Gaps = 9/216 (4%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR-------DQRVVLVNQDSFYHSLTDEKLQN 80
+PF+IGV+GGTASGK++VC I+ L ++VV+++QDSFY LT E+
Sbjct: 18 NGGEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYRVLTSEQKAK 77
Query: 81 LH--DYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILE 138
+NFDHPDAFD EL+L ++++ G+ V IP YDF SH RK+++ + P+DV + E
Sbjct: 78 ALKGQFNFDHPDAFDNELILKTLKEITEGKTVQIPVYDFVSHSRKEETVTVYPADVVLFE 137
Query: 139 GILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEE 198
GIL + VRDL MK+FVDTD+D RLSRR+ RD ERGRD+E +L QY FVKP+FEE
Sbjct: 138 GILAFYSQEVRDLFQMKLFVDTDADTRLSRRVLRDISERGRDLEQILSQYITFVKPAFEE 197
Query: 199 FILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
F LP+KKYAD+IIPRG DN VAI+LIVQHI L
Sbjct: 198 FCLPTKKYADVIIPRGADNLVAINLIVQHIQDILNG 233
>1bd3_D Uprtase, uracil phosphoribosyltransferase; glycosyltransferase;
1.93A {Toxoplasma gondii} SCOP: c.61.1.1 PDB: 1bd4_D
1jlr_A* 1jls_B* 1upf_D 1upu_D*
Length = 243
Score = 256 bits (656), Expect = 1e-83
Identities = 112/244 (45%), Positives = 162/244 (66%), Gaps = 11/244 (4%)
Query: 208 DIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTT 267
++ PR ND ++ D+ + NV ++ T Q+R M T+IRD T
Sbjct: 9 LLVDPRYSTNDQEESIL----------QDIITRFPNVVLMKQTAQLRAMMTIIRDKETPK 58
Query: 268 HDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYTGVVFCRRLCGISIIRSGESMEN 327
+FVFYADRLIRL++E L LPF +K++ TP Y GV F ++CG+SI+R+GESME+
Sbjct: 59 EEFVFYADRLIRLLIEEALNELPFQKKEVTTPLDVSYHGVSFYSKICGVSIVRAGESMES 118
Query: 328 ALRACCKGIKIGKILIHREGNSGR-QLIYQKLPADISSRHVLLLDPILASGNSAVKAISL 386
LRA C+G++IGKILI R+ + +LIY+KLPADI R V+LLDP+ A+ S KAI +
Sbjct: 119 GLRAVCRGVRIGKILIQRDETTAEPKLIYEKLPADIRERWVMLLDPMCATAGSVCKAIEV 178
Query: 387 ILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDR 446
+L GV E IIF+N++AAPQGI + K +PK+++VT+ +D ++ ++PG+G+FGDR
Sbjct: 179 LLRLGVKEERIIFVNILAAPQGIERVFKEYPKVRMVTAAVDICLNSRYYIVPGIGDFGDR 238
Query: 447 YFGT 450
YFGT
Sbjct: 239 YFGT 242
>3dmp_A Uracil phosphoribosyltransferase; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 2.60A {Burkholderia pseudomallei}
Length = 217
Score = 232 bits (592), Expect = 3e-74
Identities = 64/212 (30%), Positives = 114/212 (53%), Gaps = 2/212 (0%)
Query: 241 YSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPT 300
+ N+ ++ I+ T +RD T+T F + L+ +LP T K++ TP
Sbjct: 8 FPNLFILDHP-LIQHKLTHMRDKDTSTRTFRELLREITLLMGYEITRNLPITTKRVETPL 66
Query: 301 GSVYTGVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPA 360
+ V+ ++L + ++R+G M + L ++G I ++R + R + Y
Sbjct: 67 VEIDAPVIAGKKLAIVPVLRAGVGMSDGLLELIPSARVGHIGVYRA-DDHRPVEYLVRLP 125
Query: 361 DISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIK 420
D+ R +L DP++A+G SA AI ++ +GVP ++FL L+AAP+G+ P +K
Sbjct: 126 DLEDRIFILCDPMVATGYSAAHAIDVLKRRGVPGERLMFLALVAAPEGVQVFQDAHPDVK 185
Query: 421 IVTSEIDSSIDEHACVIPGMGEFGDRYFGTDN 452
+ + +DS +D+HA ++PG+G+ GDR FGT N
Sbjct: 186 LYVASLDSHLDDHAYIVPGLGDAGDRLFGTKN 217
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI,
protein structure initiative; 1.90A {Geobacillus
stearothermophilus} SCOP: c.37.1.6
Length = 201
Score = 224 bits (573), Expect = 1e-71
Identities = 39/191 (20%), Positives = 85/191 (44%), Gaps = 10/191 (5%)
Query: 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLH 82
+ T V+G+ G + SGKTT+ N + LR+Q V + + D
Sbjct: 15 LAIKTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERAKRYHTGNE 74
Query: 83 DYNFDHPDAFDTELLLSD-MEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL 141
++ + +D E L +LK +++P YD ++ +++ ++ SD+ ++EG+
Sbjct: 75 EWFEYYYLQWDVEWLTHQLFRQLKASHQLTLPFYDHETDTHSKRTVYLSDSDMIMIEGVF 134
Query: 142 VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFIL 201
L R +++D ++R +R + ++I+ +++Y + + + E
Sbjct: 135 -LQRKEWRPFFDFVVYLDCPREIRFARENDQ----VKQNIQKFINRYWK-AEDYYLETEE 188
Query: 202 PSKKYADIIIP 212
P K AD++
Sbjct: 189 P-IKRADVVFD 198
>1i5e_A Uracil phosphoribosyltransferase; salvage pathway; HET: U5P; 3.00A
{Bacillus caldolyticus} SCOP: c.61.1.1
Length = 209
Score = 220 bits (561), Expect = 1e-69
Identities = 67/210 (31%), Positives = 110/210 (52%), Gaps = 4/210 (1%)
Query: 242 SNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTG 301
V + I+ T IRD T T +F D + L+ LP E +I TP
Sbjct: 2 GKV-YVFDHPLIQHKLTYIRDKNTGTKEFRELVDEVATLMAFEITRDLPLEEVEIETPVS 60
Query: 302 SVYTGVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQ-LIYQKLPA 360
V+ ++L I I+R+G M + + K+G I ++R+ + + Y KLP+
Sbjct: 61 KARAKVIAGKKLGVIPILRAGIGMVDGILKLIPAAKVGHIGLYRDPQTLKPVEYYVKLPS 120
Query: 361 DISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIK 420
D+ R +++DP+LA+G SAV AI + +G +I F+ LIAAP+G+ A+ P +
Sbjct: 121 DVEERDFIIVDPMLATGGSAVAAIDALKKRGAK--SIKFMCLIAAPEGVKAVETAHPDVD 178
Query: 421 IVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
I + +D +++H ++PG+G+ GDR FGT
Sbjct: 179 IYIAALDERLNDHGYIVPGLGDAGDRLFGT 208
>1v9s_A Uracil phosphoribosyltransferase; pyrimidine salvage,
oligomerization, structural genomics, RI structural
genomics/proteomics initiative; 2.10A {Thermus
thermophilus} SCOP: c.61.1.1
Length = 208
Score = 219 bits (559), Expect = 2e-69
Identities = 60/206 (29%), Positives = 105/206 (50%), Gaps = 3/206 (1%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
+V ++ +RD T DF A+ + L+ + L E + TP
Sbjct: 4 TLVDHPLVQHKLAHLRDKRTGPKDFRELAEEVAMLMAYEAMRDLELEETTVETPIAPARV 63
Query: 306 GVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHR-EGNSGRQLIYQKLPADISS 364
V+ ++L ++I+R+G M + ++G I ++R + Y KLP DI+
Sbjct: 64 KVLSGKKLALVAILRAGLVMVEGILKLVPHARVGHIGLYRDPESLNPVQYYIKLPPDIAE 123
Query: 365 RHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTS 424
R LLDP+LA+G SA A+SL+ +G + + ++AAP+G+ I K P ++V +
Sbjct: 124 RRAFLLDPMLATGGSASLALSLLKERGAT--GVKLMAILAAPEGLERIAKDHPDTEVVVA 181
Query: 425 EIDSSIDEHACVIPGMGEFGDRYFGT 450
ID +++H ++PG+G+ GDR +GT
Sbjct: 182 AIDERLNDHGYIVPGLGDAGDRIYGT 207
>2e55_A Uracil phosphoribosyltransferase; structural genomics; 2.15A
{Aquifex aeolicus}
Length = 208
Score = 217 bits (554), Expect = 8e-69
Identities = 48/206 (23%), Positives = 92/206 (44%), Gaps = 2/206 (0%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
V +S I+ R T+ L ++V L + EK++ T G+
Sbjct: 3 VELSHPLIKHKVNTARIQDTSAEKLRKTLKELGFMLVYEALKDILLEEKEVRTWIGNKRF 62
Query: 306 GVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLIYQKLPADISSR 365
+ + + I+R+G S K+G + I R + IY ++ +
Sbjct: 63 NYLNEEEIVFVPILRAGLSFLEGALQVVPNAKVGFLGIKRNEETLESHIYYSRLPELKGK 122
Query: 366 HVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTSE 425
V++LDP+LA+G + A+ IL + ++ IAAP+G+ I ++F +++I
Sbjct: 123 IVVILDPMLATGGTLEVALREILKHSP--LKVKSVHAIAAPEGLKRIEEKFKEVEIFVGN 180
Query: 426 IDSSIDEHACVIPGMGEFGDRYFGTD 451
+D +++ +IPG+G+ GDR +
Sbjct: 181 VDERLNDKGYIIPGLGDIGDRLYAVS 206
>1o5o_A Uracil phosphoribosyltransferase; TM0721, structural genomic PSI,
protein structure initiative, joint center for structu
genomics; HET: U5P; 2.30A {Thermotoga maritima} SCOP:
c.61.1.1
Length = 221
Score = 217 bits (554), Expect = 1e-68
Identities = 63/217 (29%), Positives = 110/217 (50%), Gaps = 4/217 (1%)
Query: 235 HDLCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEK 294
H N+ V+V I+ T++RD T +F + L+ HL E
Sbjct: 7 HHHHHHMKNL-VVVDHPLIKHKLTIMRDKNTGPKEFRELLREITLLLAYEATRHLKCEEV 65
Query: 295 QIITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQLI 354
++ TP + + + + I+R+G M + + +G I I+R+ + + +
Sbjct: 66 EVETPITKTIGYRINDKDIVVVPILRAGLVMADGILELLPNASVGHIGIYRDPETLQAVE 125
Query: 355 Y-QKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAIC 413
Y KLP + V LLDP+LA+G S++KAI ++ G + I + LIAAP+G+ A+
Sbjct: 126 YYAKLPPLNDDKEVFLLDPMLATGVSSIKAIEILKENGAKK--ITLVALIAAPEGVEAVE 183
Query: 414 KRFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFGT 450
K++ +KI + +D +++H +IPG+G+ GDR F T
Sbjct: 184 KKYEDVKIYVAALDERLNDHGYIIPGLGDAGDRLFRT 220
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1,
nicotinic acid riboside kinase activity, NAD
biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB:
2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Length = 207
Score = 208 bits (531), Expect = 3e-65
Identities = 36/214 (16%), Positives = 79/214 (36%), Gaps = 18/214 (8%)
Query: 21 SSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQN 80
S + F+IG++G T SGKTT+ + L + +++QD F+ ++ +
Sbjct: 10 HSSGLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLPN--CSVISQDDFFKPESEIETDK 67
Query: 81 LHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGI 140
+D +A + E ++S + S+ D +S + + I+EG
Sbjct: 68 NGFLQYDVLEALNMEKMMSAISCWMESARHSVVSTDQESAE---------EIPILIIEGF 118
Query: 141 LVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFI 200
L+ + + + + F+ + RR R D + V P + ++
Sbjct: 119 LLFNYKPLDTIWNRSYFLTIPYEECKRRRSTRVY-----QPPDSPGYFDGHVWPMYLKYR 173
Query: 201 LPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
+ ++ D + + + + L Q
Sbjct: 174 QEMQDITWEVVY--LDGTKSEEDLFLQVYEDLIQ 205
>2ehj_A Uracil phosphoribosyltransferase; structural genomics; 2.80A
{Escherichia coli}
Length = 208
Score = 202 bits (514), Expect = 7e-63
Identities = 59/206 (28%), Positives = 104/206 (50%), Gaps = 3/206 (1%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
V V ++ L+R+ +T F A + L+ L + I G V
Sbjct: 4 VEVKHPLVKHKLGLMREQDISTKRFRELASEVGSLLTYEATADLETEKVTIEGWNGPVEI 63
Query: 306 GVVFCRRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQ-LIYQKLPADISS 364
+ +++ + I+R+G M + + +I + ++R + +QKL ++I
Sbjct: 64 DQIKGKKITVVPILRAGLGMMDGVLENVPSARISVVGMYRNEETLEPVPYFQKLVSNIDE 123
Query: 365 RHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICKRFPKIKIVTS 424
R L++DP+LA+G S + I L+ G S+I L L+AAP+GI A+ K P +++ T+
Sbjct: 124 RMALIVDPMLATGGSVIATIDLLKKAGC--SSIKVLVLVAAPEGIAALEKAHPDVELYTA 181
Query: 425 EIDSSIDEHACVIPGMGEFGDRYFGT 450
ID ++EH +IPG+G+ GD+ FGT
Sbjct: 182 SIDQGLNEHGYIIPGLGDAGDKIFGT 207
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis,
nucleotide binding binding, cytoplasm,
nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium
tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A*
2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A*
2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A*
3avo_A* 3avq_A*
Length = 312
Score = 197 bits (503), Expect = 9e-60
Identities = 50/220 (22%), Positives = 87/220 (39%), Gaps = 29/220 (13%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR----DQRVVLVNQDSFYHSLTDEKLQNLHD 83
PF+IGVAG A GK+T ++ + L RV LV D F + + + +NL
Sbjct: 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHHPRVDLVTTDGFLYPNAELQRRNLM- 144
Query: 84 YNFDHPDAFDTELLLSDMEKLKHGQA-VSIPDYDFKSHKR-KQQSRLINPSDVFILEGIL 141
+ P++++ L+ + +K G P Y + +++ D+ ILEG+
Sbjct: 145 HRKGFPESYNRRALMRFVTSVKSGSDYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLN 204
Query: 142 VLHDP---RVRDLMSMKIFVDTDSDVRLSRRIQRDTV---ERGRDIEDVLDQYAR----- 190
VL V DL ++VD + + R D E YA
Sbjct: 205 VLQTGPTLMVSDLFDFSLYVDARIEDIEQWYVSRFLAMRTTAFADPESHFHHYAAFSDSQ 264
Query: 191 -----------FVKPSFEEFILPSKKYADIIIPRGGDNDV 219
+P+ E ILP++ A +++ + D+ +
Sbjct: 265 AVVAAREIWRTINRPNLVENILPTRPRATLVLRKDADHSI 304
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter
sphaeroides} SCOP: c.37.1.6
Length = 290
Score = 196 bits (498), Expect = 2e-59
Identities = 43/263 (16%), Positives = 89/263 (33%), Gaps = 33/263 (12%)
Query: 29 TKQPFVIGVAGGTASGKTTVCNMIISRLRDQRV--VLVNQDSFYHSLTDEKLQ------- 79
+K+ +I V G + +G +TV + R + V V + D+F+ +
Sbjct: 2 SKKHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFHRFNRADMKAELDRRYA 61
Query: 80 -NLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSR----------L 128
++ +A + + L + Y + +
Sbjct: 62 AGDATFSHFSYEANELKELERVFREYGETGQGRTRTYVHDDAEAARTGVAPGNFTDWRDF 121
Query: 129 INPSDVFILEGI---LVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185
+ S + EG+ +V + + L +KI V ++ ++I RD RG E V
Sbjct: 122 DSDSHLLFYEGLHGAVVNSEVNIAGLADLKIGVVPVINLEWIQKIHRDRATRGYTTEAVT 181
Query: 186 DQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSN-- 243
D R ++ I+P DI R D + I + I T + + +
Sbjct: 182 DVILR-RMHAYVHCIVPQFSQTDINFQRVPVVDTSNPFIARWIPTADESVVVIRFRNPRG 240
Query: 244 ------VDVIVSTFQIRGMHTLI 260
+I ++ R ++++
Sbjct: 241 IDFPYLTSMIHGSWMSR-ANSIV 262
>1xtt_A Probable uracil phosphoribosyltransferase; tetramer, type 1
phosphoribosyltransferase, UMP complex; HET: U5P; 1.80A
{Sulfolobus solfataricus} SCOP: c.61.1.1 PDB: 1vst_A*
1xtu_A* 1xtv_A* 3g6w_A*
Length = 216
Score = 191 bits (486), Expect = 2e-58
Identities = 47/215 (21%), Positives = 96/215 (44%), Gaps = 13/215 (6%)
Query: 246 VIVSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSVYT 305
++ + T +RD T +F RL R++ L + ++ TP G
Sbjct: 4 YVIDKPITLHILTQLRDKYTDQINFRKNLVRLGRILGYEISNTLDYEIVEVETPLGVKTK 63
Query: 306 GVVFC--RRLCGISIIRSGESMENALRACCKGIKIGKILIHREGNSGRQ--------LIY 355
GV + I+I+R+ + L + G I R G++ + Y
Sbjct: 64 GVDITDLNNIVIINILRAAVPLVEGLLKAFPKARQGVIGASRVEVDGKEVPKDMDVYIYY 123
Query: 356 QKLP-ADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICK 414
+K+P +V++ DP++A+ ++ +K + ++ I +++I++ G++ I
Sbjct: 124 KKIPDIRAKVDNVIIADPMIATASTMLKVLEEVVKANP--KRIYIVSIISSEYGVNKILS 181
Query: 415 RFPKIKIVTSEIDSSIDEHACVIPGMGEFGDRYFG 449
++P I + T ID ++ ++PG+G+ GDR FG
Sbjct: 182 KYPFIYLFTVAIDPELNNKGYILPGLGDAGDRAFG 216
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system
kinase, STRU genomics, joint center for structural
genomics, JCSG; 1.95A {Silicibacter SP}
Length = 208
Score = 186 bits (475), Expect = 6e-57
Identities = 38/192 (19%), Positives = 75/192 (39%), Gaps = 10/192 (5%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFD 87
++ ++G SGK+T+ N + + L Q +V D F+ + + L
Sbjct: 20 PGRQLVALSGAPGSGKSTLSNPLAAALSAQGLPAEVVPMDGFHLDNRLLEPRGLLP-RKG 78
Query: 88 HPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPS-DVFILEGILVLHD- 145
P+ FD E LKH + V P +D + + P V I+EG +L D
Sbjct: 79 APETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDA 138
Query: 146 ---PRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILP 202
+ + + I ++ +R +QR ++ G + + + + + I
Sbjct: 139 PGWRDLTAIWDVSIRLEVPMADLEARLVQRW-LDHGLNHDAAVARAQGNDLAN-ARAIEA 196
Query: 203 SKKYADIIIPRG 214
++ AD+ P+
Sbjct: 197 ARLPADLTWPQA 208
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A
{Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Length = 308
Score = 188 bits (479), Expect = 2e-56
Identities = 52/229 (22%), Positives = 91/229 (39%), Gaps = 36/229 (15%)
Query: 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRL----RDQRVVLVNQDSFYHSLTDEKLQNL 81
T + P++I +AG A GK+T ++ + L +RV L+ D F H K + L
Sbjct: 74 TNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRRVELITTDGFLHPNQVLKERGL 133
Query: 82 HDYNFDHPDAFDTELLLSDMEKLKHGQA-VSIPDYDFKSHKR-KQQSRLINPSDVFILEG 139
P+++D L+ + LK G V+ P Y + + + D+ ILEG
Sbjct: 134 M-KKKGFPESYDMHRLVKFVSDLKSGVPNVTAPVYSHLIYDVIPDGDKTVVQPDILILEG 192
Query: 140 ILVLHDPR----------VRDLMSMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLD 186
+ VL V D + I+VD D+ + I R R D +
Sbjct: 193 LNVLQSGMDYPHDPHHVFVSDFVDFSIYVDAPEDLLQTWYINRFLKFREGAFTDPDSYFH 252
Query: 187 QYARF----------------VKPSFEEFILPSKKYADIIIPRGGDNDV 219
YA+ + ++ ILP+++ A +I+ + ++ V
Sbjct: 253 NYAKLTKEEAIKTAMTLWKEINWLNLKQNILPTRERASLILTKSANHAV 301
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups,
carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Length = 321
Score = 181 bits (461), Expect = 1e-53
Identities = 51/227 (22%), Positives = 89/227 (39%), Gaps = 36/227 (15%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR----DQRVVLVNQDSFYHSLTDEKLQNLHD 83
K P++IG+AG A GK+T ++ + L V ++ D F +S + Q L
Sbjct: 88 EPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTDGFLYSNAKLEKQGLMK 147
Query: 84 YNFDHPDAFDTELLLSDMEKLKHGQA-VSIPDYDFKSHKR-KQQSRLINPSDVFILEGIL 141
P+++D LL + +K GQ V IP Y + + Q +++ D+ ILEG+
Sbjct: 148 -RKGFPESYDMPSLLRVLNAIKSGQRNVRIPVYSHHYYDIVRGQYEIVDQPDIVILEGLN 206
Query: 142 VLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERG-------------RDIEDVLDQY 188
+L + L +++FV D L Q +++ +D
Sbjct: 207 ILQTGVRKTLQQLQVFVSDFFDFSLFVDAQAQVIQKWYIDRVLSFWRTTFKDPHSYFHYL 266
Query: 189 A----------------RFVKPSFEEFILPSKKYADIIIPRGGDNDV 219
K + E ILP K A +I+ + D+ +
Sbjct: 267 TQMSETEVAAFAKHVWNEINKVNLMENILPYKNRAQLILEKAADHSI 313
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic
region; yeast protein, ATP binding protein; 2.25A
{Saccharomyces cerevisiae} SCOP: c.37.1.6
Length = 290
Score = 73.1 bits (178), Expect = 1e-14
Identities = 37/183 (20%), Positives = 67/183 (36%), Gaps = 22/183 (12%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLR-----DQRVVLVNQDSFYHSLTD-EKLQNL 81
K P I +G SGK+ I + L ++ + + D FY + D KL
Sbjct: 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLMEKYGGEKSIGYASIDDFYLTHEDQLKLNEQ 86
Query: 82 HDYN-----FDHPDAFDTELLLSDMEKLKHG------QAVSIPDYDF-----KSHKRKQQ 125
N P D +LL + + + V +P YD + +
Sbjct: 87 FKNNKLLQGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTG 146
Query: 126 SRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185
++ P D+FILEG + +P ++ + + + DV D + R +I+ +
Sbjct: 147 QKIKLPVDIFILEGWFLGFNPILQGIENNDLLTGDMVDVNAKLFFYSDLLWRNPEIKSLG 206
Query: 186 DQY 188
+
Sbjct: 207 IVF 209
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 60.6 bits (146), Expect = 6e-10
Identities = 60/385 (15%), Positives = 112/385 (29%), Gaps = 99/385 (25%)
Query: 15 LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDS-FYHSL 73
L L+ A E P K + GV G SGKT + + +V F+ +L
Sbjct: 138 LKLRQALLELR--PAKNVLIDGVLG---SGKTW---VALDVCLSYKVQCKMDFKIFWLNL 189
Query: 74 TD--------EKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQ 125
+ E LQ L Y D + H + + + ++ R+
Sbjct: 190 KNCNSPETVLEMLQKLL-YQIDPNWT----------SRSDHSSNIKLRIHSIQAELRRLL 238
Query: 126 SRLINPSDVFILEGILVLHDPRVRDLMSM--KIFVDT-DSDV--RLS----RRIQRDTVE 176
+ + +L + + + + ++ KI + T V LS I D
Sbjct: 239 KSKPYENCLLVLLNV---QNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHS 295
Query: 177 RGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHD 236
++V +++ ++ LP + PR + +I
Sbjct: 296 MTLTPDEVKSLLLKYLDCRPQD--LPRE--VLTTNPR------RLSIIA----------- 334
Query: 237 LCKIYSNVDVIVSTFQIRGMHTLIRDVTTTTHDFVFY-ADRLIRLVVEHGLGHLPFTEKQ 295
IRD T ++ D+L ++E L L E +
Sbjct: 335 ---------------------ESIRDGLATWDNWKHVNCDKLTT-IIESSLNVLEPAEYR 372
Query: 296 ------IITPTGSVYTGVVFCRRLCGISIIRSGESMENALRACC---KGIKIGKILIHRE 346
+ P + ++ + I + N L K K I I
Sbjct: 373 KMFDRLSVFPPSAHIPTILLS-LIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIP-- 429
Query: 347 GNSGRQLIYQKLPADISSRHVLLLD 371
L + + + H ++D
Sbjct: 430 ---SIYLELKVKLENEYALHRSIVD 451
Score = 54.1 bits (129), Expect = 7e-08
Identities = 45/294 (15%), Positives = 89/294 (30%), Gaps = 64/294 (21%)
Query: 50 NMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQA 109
+ L + V+ N S+ E ++ D +D + +KL
Sbjct: 312 DCRPQDLPRE-VLTTN--PRRLSIIAESIR-------DGLATWDN-WKHVNCDKLTTIIE 360
Query: 110 VSIPDYDFKSHKRKQQSRLINPSDVFILEGILVL--HDPRVRDLMSMKIFVDTDSDVRLS 167
S+ + +++ + P I +L L D D+M + V+ L
Sbjct: 361 SSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVV---VNKLHKYSL- 416
Query: 168 RRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSK---KYADIIIPRGGDNDVAIDL- 223
+++ E I + Y E+ L Y IP+ D+D I
Sbjct: 417 --VEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYN---IPKTFDSDDLIPPY 468
Query: 224 ----IVQHI---LTKLGQHDLC----KIYSNVDVIVSTFQIRGMHTLIR---DVTTTTHD 269
HI L + + ++ + + +IR T + T
Sbjct: 469 LDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQ--KIRHDSTAWNASGSILNTLQQ 526
Query: 270 FVFYA----------DRLIRLV------VEHGLGHLPFTE-KQII--TPTGSVY 304
FY +RL+ + +E L +T+ +I +++
Sbjct: 527 LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein,
feedback inhibition, deoxyribonucleoside kinase, salvage
pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP:
c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A*
2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A*
1zm7_A* 1zmx_A*
Length = 230
Score = 45.8 bits (108), Expect = 9e-06
Identities = 34/234 (14%), Positives = 74/234 (31%), Gaps = 25/234 (10%)
Query: 16 SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRV----VLVNQDSFYH 71
+ A + QPF + + G SGKTT N D + V ++
Sbjct: 4 AASCARKGTKYAEGTQPFTVLIEGNIGSGKTTYLNHFEKYKNDICLLTEPVEKWRNVNGV 63
Query: 72 SLTDEKLQNLHDYNFDHPDAFDTELLLSDME----KLKHGQAVSIPDYDFKSHKRKQQSR 127
+L + ++ + +L S KLK + ++
Sbjct: 64 NLLELMYKDPKKWAMPFQSYVTLTMLQSHTAPTNKKLKIMERSIFSARYCFVENMRRN-G 122
Query: 128 LINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE-DVLD 186
+ LE + + + I++ T +V RI++ R R E V
Sbjct: 123 SLEQGMYNTLEEWYKFIEESIHVQADLIIYLRTSPEV-AYERIRQ----RARSEESCVPL 177
Query: 187 QYARFVKPSFEEFILPSKKYAD---IIIPRGGDNDVA-----IDLIVQHILTKL 232
+Y + + E++++ ++ +++ D ++ I +
Sbjct: 178 KYLQELHELHEDWLIHQRRPQSCKVLVLD--ADLNLENIGTEYQRSESSIFDAI 229
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A
{Enterobacteria phage T4} SCOP: c.37.1.1
Length = 181
Score = 43.6 bits (103), Expect = 3e-05
Identities = 23/188 (12%), Positives = 49/188 (26%), Gaps = 28/188 (14%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M +I G SGK+T I++ +N+D + S+ + ++ + Y
Sbjct: 1 MKK----IILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 87 DHPDAFDT---ELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVL 143
+ S + + V I D + +R +
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVEH----- 109
Query: 144 HDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPS 203
D + R +R + I+ + Y + +
Sbjct: 110 ------------KVFDVPWTELVKRNSKRG--TKAVPIDVLRSMYKSMREYLGLPVYNGT 155
Query: 204 KKYADIII 211
+I
Sbjct: 156 PGKPKAVI 163
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function;
HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Length = 359
Score = 42.0 bits (98), Expect = 3e-04
Identities = 29/233 (12%), Positives = 62/233 (26%), Gaps = 60/233 (25%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRD--------QRVVLVNQDSFYHSLTDEKLQNLHDYN 85
V + + + + +V D +H L+ L D
Sbjct: 121 CTAVVARGGTANAIRIAAVDNPVNVNKLAQDSINIAQIVPMDG-FH-LSRRCLDLFKDPQ 178
Query: 86 FDH-----PDAFDTELLLSDMEKLKHG-----------------------------QAVS 111
H P FD+ L + L +
Sbjct: 179 TAHKRRGSPSTFDSNNFLQLCKILAKTSLCKVSSHHKFYSTSSVFEKLSKTFSQTIPDIF 238
Query: 112 IPDYDFKSHKRKQQSRLINPS-DVFILEGILVLHDP----RVRDLM-----SMKIFVDTD 161
+P ++ I+ + ILEG+ +L+D ++ + + +D D
Sbjct: 239 VPGFNHALKDPTPDQYCISKFTRIVILEGLYLLYDQENWKKIYKTLADTGALLVYKIDID 298
Query: 162 SDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFE---EFILPSKKYADIII 211
+ R +R ++ G + + + + + I D I+
Sbjct: 299 YEATEERVAKRH-LQSG--LVTTIAEGREKFRSNDLLNGRDIDNHLIKVDNIV 348
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 42.3 bits (99), Expect = 3e-04
Identities = 50/293 (17%), Positives = 94/293 (32%), Gaps = 83/293 (28%)
Query: 4 VIELADDFADD---LSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR 60
V AD+ D S+ + P + + G GK R+R+
Sbjct: 1645 VWNRADNHFKDTYGFSI-------LDIVINNPVNLTIHFGGEKGK---------RIRENY 1688
Query: 61 VVLVNQDSFYHSLTDEKL-----QNLHDYNFDHPDA--FDTE-----LLLSDM---EKLK 105
++ + L EK+ ++ Y F T+ L L + E LK
Sbjct: 1689 SAMIFETIVDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLK 1748
Query: 106 HGQAVSIPDYDFKSHKRKQQS-----RLINPSDVFILE---------GIL----VLHDPR 147
+ F H S L + +DV +E G+ V D
Sbjct: 1749 SKGLIPADAT-FAGH-----SLGEYAALASLADVMSIESLVEVVFYRGMTMQVAVPRDEL 1802
Query: 148 VRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEE---FILPSK 204
R M I ++ R++ ++ ++ +E V + V E + + ++
Sbjct: 1803 GRSNYGM-IAINPG---RVAASFSQEALQYV--VERVGKRTGWLV-----EIVNYNVENQ 1851
Query: 205 KYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKI-YSNVDVIVSTFQIRGM 256
+Y + GD A+D + +L + KI + +S ++ G
Sbjct: 1852 QY--VA---AGDL-RALDTVTN-VLNFIKLQ---KIDIIELQKSLSLEEVEGH 1894
Score = 37.3 bits (86), Expect = 0.013
Identities = 38/265 (14%), Positives = 82/265 (30%), Gaps = 92/265 (34%)
Query: 197 EEFIL----PSKKYADIIIPRGGDNDVA--IDLIVQ---HILTKLGQHDLCKIYSNVDVI 247
E+F P++ +A D++ +L+ + ++ + + + + +++
Sbjct: 35 EQFNKILPEPTEGFA-------ADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLC 87
Query: 248 VSTFQIRGMHTLIRDVTTTTHDFVFYADRLIRLVVEHGLGHLPFTEKQIITPTGSV---- 303
++ F+ + D+ H L + T +
Sbjct: 88 LTEFENCYLEG--NDI----HALA---------------AKLLQENDTTLVKTKELIKNY 126
Query: 304 YTGVVFCRRLCGISIIRSGESMENAL-RACCKG-IKI-----GKILIHREGNSG------ 350
T + +R + S AL RA +G ++ G +GN+
Sbjct: 127 ITARIMAKR----PFDKKSNS---ALFRAVGEGNAQLVAIFGG------QGNTDDYFEEL 173
Query: 351 RQL--IYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGV--------PES--NII 398
R L Y L D+ L ++ + A K + ++G+ P + +
Sbjct: 174 RDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEK----VFTQGLNILEWLENPSNTPDKD 229
Query: 399 FL-------NLIAAPQGIH--AICK 414
+L LI Q H K
Sbjct: 230 YLLSIPISCPLIGVIQLAHYVVTAK 254
Score = 35.8 bits (82), Expect = 0.035
Identities = 56/420 (13%), Positives = 113/420 (26%), Gaps = 156/420 (37%)
Query: 70 YHSL-------TDEKLQNL----HDYNFDHPDAFDTELLLSDMEKLKHGQ------AVSI 112
YH L + E L L D + L + + +S
Sbjct: 180 YHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLNILEWLENPSN-TPDKDYLLSIPISC 238
Query: 113 PDYDFKSHKRKQQSRLI-----------------NPSDVF-ILEGILVLHDPRVRDLMSM 154
P LI P ++ L+G + L++
Sbjct: 239 P--------------LIGVIQLAHYVVTAKLLGFTPGELRSYLKGATG----HSQGLVTA 280
Query: 155 KIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFI------------LP 202
+TDS E + + F FI LP
Sbjct: 281 VAIAETDSW------------------ESFFVSVRKAITVLF--FIGVRCYEAYPNTSLP 320
Query: 203 SKKYADII-----IP------RGGDNDVAIDLIVQHILTKLGQHDLCKIY-SNVD----V 246
D + +P + + V + L ++ S V+ +
Sbjct: 321 PSILEDSLENNEGVPSPMLSISNLTQE-QVQDYVNKTNSHLPAGK--QVEISLVNGAKNL 377
Query: 247 IVS--TFQIRGMHTLIRDVTTTTHDF---VFYADRLIRLVVEHGLGHLPFTEKQIITPTG 301
+VS + G++ +R + + +++R ++ LP + +P
Sbjct: 378 VVSGPPQSLYGLNLTLRKAKAPSGLDQSRIPFSERKLKFSNRF----LP-----VASPFH 428
Query: 302 SVY-TGVV--FCRRLCGISIIRSGESMENALRACCKGIKI-------GKILIHREGNSGR 351
S + L ++ + + + +I G L G+
Sbjct: 429 SHLLVPASDLINKDLVKNNVSFNAKDI-----------QIPVYDTFDGSDLRVLSGSISE 477
Query: 352 QLIYQ--KLPAD------ISSRHVLLLDPILASGNSAV-------KAISLILSKGVPESN 396
+++ +LP + H+L P ASG + + +I++ G + N
Sbjct: 478 RIVDCIIRLPVKWETTTQFKATHILDFGPGGASGLGVLTHRNKDGTGVRVIVA-GTLDIN 536
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure
initiative, midwest CENT structural genomics, MCSG;
2.79A {Clostridium symbiosum atcc 14940}
Length = 223
Score = 40.9 bits (95), Expect = 4e-04
Identities = 42/226 (18%), Positives = 70/226 (30%), Gaps = 23/226 (10%)
Query: 20 ASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR---------DQRVVLVNQDSFY 70
A M K +I + SG V + L +
Sbjct: 3 AMQGGRFMGNKN-LIITIEREYGSGGRIVGKKLAEELGIHFYDDDILKLASEKSAVGEQF 61
Query: 71 HSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLIN 130
L DEK N Y D S +KL + P+ FK + +
Sbjct: 62 FRLADEKAGNNLLYRLGGGRKIDLHSKPSPNDKL------TSPENLFKFQSEVMRELAES 115
Query: 131 PSDVFI-LEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLD 186
+F+ VL + ++IFV TD ++ R ++ D ++ R I+ +
Sbjct: 116 EPCIFVGRAAGYVLDQDEDIE-RLIRIFVYTDKVKKVQRVMEVDCIDEERAKRRIKKIEK 174
Query: 187 QYARFVKPSFEEFILPSKKYADIIIPRGG-DNDVAIDLIVQHILTK 231
+ + K K Y D+ I + +LI +I K
Sbjct: 175 ERKEYYKYFTGSEWHSMKNY-DLPINTTKLTLEETAELIKAYIRLK 219
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure
initiative, PSI, SGPP structural genomics of pathogenic
protozoa consortium; HET: ADP; 1.70A {Leishmania major}
SCOP: c.37.1.1
Length = 184
Score = 40.1 bits (93), Expect = 5e-04
Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 3/105 (2%)
Query: 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDY 84
+M + I + G +GKT++ MI + L + + V + + E +
Sbjct: 3 GSMEQPKGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKENHFYTEYDT---EL 59
Query: 85 NFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLI 129
+ + D + LL ME + + + DY ++ ++
Sbjct: 60 DTHIIEEKDEDRLLDFMEPIMVSRGNHVVDYHSSELFPERWFHMV 104
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR;
HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10
PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Length = 262
Score = 39.7 bits (92), Expect = 0.001
Identities = 17/56 (30%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 19 SASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR-VVLVNQDSFYHSL 73
S M + +G AG SGKTT+ L D V VN D+ L
Sbjct: 4 SHHHHHHGMASMIVVFVGTAG---SGKTTLTGEFGRYLEDNYKVAYVNLDTGVKEL 56
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL
helix motif, transcription regulator; 3.20A
{Streptococcus pneumoniae}
Length = 253
Score = 39.5 bits (91), Expect = 0.001
Identities = 20/82 (24%), Positives = 38/82 (46%), Gaps = 3/82 (3%)
Query: 28 PTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF--YHSLTDEKLQNLHDYN 85
+KQP I + G + +GKTT+ + + +V+++ DSF H E Q +
Sbjct: 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQG-NIVIIDGDSFRSQHPHYLELQQEYGKDS 86
Query: 86 FDHPDAFDTELLLSDMEKLKHG 107
++ F +++ S + KL
Sbjct: 87 VEYTKDFAGKMVESLVTKLSSL 108
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate
hydrolases fold, S genomics, joint center for structural
genomics, JCSG; HET: MSE; 1.70A {Chloroflexus
aurantiacus}
Length = 193
Score = 38.0 bits (88), Expect = 0.003
Identities = 29/166 (17%), Positives = 61/166 (36%), Gaps = 15/166 (9%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHP 89
+ P +I V G A+GKTT+ + + L R+ L+++D+F + D + +++
Sbjct: 3 QTPALIIVTGHPATGKTTLSQALATGL---RLPLLSKDAFKEVMFDGLGWSDREWSRRVG 59
Query: 90 DAFDTELLLSDMEK-LKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP-- 146
+L L+ GQ++ I + +F+ ++ + ++ F I +
Sbjct: 60 ATAI-MMLYHTAATILQSGQSL-IMESNFRVDLDTERMQNLHTIAPFTPIQIRCVASGDV 117
Query: 147 -------RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL 185
R+ D S L R + +L
Sbjct: 118 LVERILSRIAQGARHPGHCDDRSPADLELVRSRGDIPPLPLGGPLL 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural
genomics, PSI, protein struc initiative; 3.20A
{Agrobacterium tumefaciens str} SCOP: c.37.1.25
Length = 191
Score = 37.8 bits (87), Expect = 0.003
Identities = 23/156 (14%), Positives = 44/156 (28%), Gaps = 7/156 (4%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPD 90
++ ++G SGK+T+ + + V + D + + ++ +
Sbjct: 8 GGNILLLSGHPGSGKSTIAEALANLP-GVPKVHFHSDDLWGYIKHGRIDPWLPQSHQQNR 66
Query: 91 AFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRD 150
K G V I D + + L P +L R D
Sbjct: 67 MIMQIAADVAGRYAKEGYFV-ILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLD 125
Query: 151 LMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLD 186
D+ SD + + + G VL
Sbjct: 126 RG-----GDSLSDPLVVADLHSQFADLGAFEHHVLP 156
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849,
bifunctional coenzyme A synthase (COA synthase), S
genomics; HET: ACO UNL; 1.70A {Mus musculus}
Length = 281
Score = 38.0 bits (89), Expect = 0.004
Identities = 35/249 (14%), Positives = 72/249 (28%), Gaps = 94/249 (37%)
Query: 16 SLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD 75
+L +E +P+ +V+G+ G + SGK++V L++ +++ D H
Sbjct: 60 NLLQPPNERPELPSG-LYVLGLTGISGSGKSSVAQR----LKNLGAYIIDSDHLGHRAYA 114
Query: 76 ---EKLQNLHDYNFDHPDAFDTELLLSDME----KLKHGQAVSIPDYDFKSHKRKQQSRL 128
Q + +AF T++L D L G V F + K+ +
Sbjct: 115 PGGPAYQPVV-------EAFGTDILHKDGTINRKVL--GSRV------FGNKKQMKI--- 156
Query: 129 INPSDVFILEGILVLHDPRVRDLMSMKIF------------------------------- 157
L I + P + L ++
Sbjct: 157 --------LTDI--VW-PVIAKLAREEMDVAVAKGKTLCVIDAAMLLEAGWQSMVHEVWT 205
Query: 158 VDTDSDVRLSRRIQRDTVERGRDIEDVLD----QYARFVKPSFEEFILPSKKYADIIIPR 213
V + R ++RD G Q S ++ + +++++
Sbjct: 206 VVIPETEAVRRIVERD----GLSEAAAQSRLQSQ------MSGQQL----VEQSNVVL-- 249
Query: 214 GGDNDVAID 222
Sbjct: 250 --STLWESH 256
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC,
cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo
sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B*
2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A*
2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A*
2zi7_B* 2zia_A* 3kfx_A* ...
Length = 263
Score = 37.9 bits (87), Expect = 0.004
Identities = 34/252 (13%), Positives = 74/252 (29%), Gaps = 38/252 (15%)
Query: 18 QSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVL--VNQDSFYHSLTD 75
+S S S + + I + G A+GK+T N++ D VV V + S D
Sbjct: 10 RSCPSFSASSEGTRIKKISIEGNIAAGKSTFVNILKQLCEDWEVVPEPVARWCNVQSTQD 69
Query: 76 EKLQNLHDYNFDHPD-------------AFDTELLLSDMEKLKHGQAVSIP--------- 113
E + F T LS + +
Sbjct: 70 EFEELTMSQKNGGNVLQMMYEKPERWSFTFQTYACLSRIRAQLASLNGKLKDAEKPVLFF 129
Query: 114 ------DYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM--SMKIFVDTDSDVR 165
D + + +N ++ I + + + + I++ +
Sbjct: 130 ERSVYSDRYIFASNLYES-ECMNETEWTIYQDWHDWMNNQFGQSLELDGIIYLQATPETC 188
Query: 166 LSRRIQRD-TVERGRDIE---DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVA- 220
L R R E+G +E + ++ ++ + + I+ ++
Sbjct: 189 LHRIYLRGRNEEQGIPLEYLEKLHYKHESWLLHRTLKTNFDYLQEVPILTLDVNEDFKDK 248
Query: 221 IDLIVQHILTKL 232
+ +V+ + L
Sbjct: 249 YESLVEKVKEFL 260
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG,
structural genomics, midwest center for structural
genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB:
3h0k_A
Length = 179
Score = 37.2 bits (86), Expect = 0.005
Identities = 28/199 (14%), Positives = 65/199 (32%), Gaps = 35/199 (17%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFD 93
VI + G SGK+ ++ R + + ++ + +
Sbjct: 3 VILITGMPGSGKSEFAKLLKER------------GAKVIVMSDVVRKRYSIEAKPGERL- 49
Query: 94 TELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDP----RVR 149
+ + + +G V + + + D+ + +G+ L + R+
Sbjct: 50 --MDFAKRLREIYGDGVVA--------RLCVEELGTSNHDLVVFDGVRSLAEVEEFKRLL 99
Query: 150 DLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADI 209
+ V + +R R I+R + ++I +++ + +K E I AD
Sbjct: 100 GDSVYIVAVHSPPKIRYKRMIERLRSDDSKEISELIRRDREELKLGIGEVI----AMADY 155
Query: 210 IIPRGGDNDVAIDLIVQHI 228
II ND + +
Sbjct: 156 II----TNDSNYEEFKRRC 170
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2
function project, S2F, structural genomics, transferase;
HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Length = 206
Score = 36.7 bits (86), Expect = 0.007
Identities = 46/240 (19%), Positives = 78/240 (32%), Gaps = 90/240 (37%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD---EKLQNLHDYNFDH 88
+++G+ GG SGKTT+ N+ D V LV+ D + L +
Sbjct: 2 TYIVGLTGGIGSGKTTIANL----FTDLGVPLVDADVVAREVVAKDSPLLSKIV------ 51
Query: 89 PDAFDTELLLSDME----KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLH 144
+ F ++L E L + V F + K L + LH
Sbjct: 52 -EHFGAQILTEQGELNRAAL--RERV------FNHDEDKLW-----------LNNL--LH 89
Query: 145 DPRVRDLMSMKIF----------------------------VDTDSDVRLSRRIQRDTVE 176
P +R+ M K+ VD +L+R QRD
Sbjct: 90 -PAIRERMKQKLAEQTAPYTLFVVPLLIENKLTALCDRILVVDVSPQTQLARSAQRD--- 145
Query: 177 RGRDIEDVLD----QYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232
+ E + Q ++ + K+AD +I +ND + + H+ K+
Sbjct: 146 -NNNFEQIQRIMNSQVSQQER----------LKWADDVI----NNDAELAQNLPHLQQKV 190
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3;
1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A*
1viy_A 1t3h_A 1n3b_A
Length = 218
Score = 36.7 bits (86), Expect = 0.008
Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 90/232 (38%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD---EKLQNLHDYNF 86
+++ + GG SGK+TV N D + +++ D + + L +
Sbjct: 2 SLRYIVALTGGIGSGKSTVANA----FADLGINVIDADIIARQVVEPGAPALHAIA---- 53
Query: 87 DHPDAFDTELLLSDME----KLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILV 142
D F ++ +D L + + F + + K L +
Sbjct: 54 ---DHFGANMIAADGTLQRRAL--RERI------FANPEEKNW-----------LNAL-- 89
Query: 143 LHDPRVRDLMSMKIF----------------------------VDTDSDVRLSRRIQRDT 174
LH P ++ +I VD + +L R +QRD
Sbjct: 90 LH-PLIQQETQHQIQQATSPYVLWVVPLLVENSLYKKANRVLVVDVSPETQLKRTMQRD- 147
Query: 175 VERGRDIEDVLD----QYARFVKPSFEEFILPSKKYADIIIPRGGDNDVAID 222
E V Q R + AD +I DN+ A D
Sbjct: 148 ---DVTREHVEQILAAQATREAR----------LAVADDVI----DNNGAPD 182
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex,
transferase; HET: DTP; 2.80A {Homo sapiens} SCOP:
c.37.1.1
Length = 241
Score = 37.0 bits (85), Expect = 0.008
Identities = 26/242 (10%), Positives = 70/242 (28%), Gaps = 46/242 (19%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQRVVL--------VNQDSFYHSLTDEKLQNL-- 81
P + + G A GK+T ++ + V + + T + L NL
Sbjct: 2 PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQAAGNQKACTAQSLGNLLD 61
Query: 82 --------HDYNFDHP---------DAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQ 124
Y F E LL + ++ + D + +
Sbjct: 62 MMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFE 121
Query: 125 QSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVDTDSDV-RLSRRIQRDTVERGRDIE- 182
++ + I + +++ F+ + +R+ + R R+ E
Sbjct: 122 N-GSLSDIEWHIYQDWHSFLLWEFASRITLHGFIYLQASPQVCLKRLYQ----RAREEEK 176
Query: 183 --------DVLDQYARFVKPSFEEFILPSKKYADIIIPRGGDNDVA----IDLIVQHILT 230
+ Q+ ++ + + +++ D+ + +++ + T
Sbjct: 177 GIELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDFSEEVTKQEDLMREVNT 236
Query: 231 KL 232
+
Sbjct: 237 FV 238
>1kht_A Adenylate kinase; phosphotransferase, signaling protein,
transferase; HET: AMP; 2.50A {Methanococcus voltae}
SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Length = 192
Score = 36.2 bits (83), Expect = 0.011
Identities = 33/165 (20%), Positives = 54/165 (32%), Gaps = 27/165 (16%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSL-TDEKLQNLHD 83
M K V GV G G TT + + LR + +V+ S + +E L + D
Sbjct: 1 MKNKVVVVTGVPG---VGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAKEENLVSDRD 57
Query: 84 YNFDHPDAFDTELLLSDMEKLKH--GQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL 141
+ K+ ++ D V +G L
Sbjct: 58 QMRKMDPETQKRIQKMAGRKIAEMAKESPVAVDTHST---------------VSTPKGYL 102
Query: 142 VLHDPRVRDLMSMK--IFVDTDSDVRLSRRIQRDTVERGRDIEDV 184
V + ++ I V+T D L RR+ +T R RD++
Sbjct: 103 PGLPSWVLNELNPDLIIVVETTGDEILMRRMSDET--RVRDLDTA 145
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme
kinase, structural genomics, joint center for
structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga
maritima}
Length = 192
Score = 36.0 bits (84), Expect = 0.014
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRL 56
VIGV G +GK+TVC ++ ++
Sbjct: 10 HHHMVIGVTGKIGTGKSTVCEILKNKY 36
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function
initiative, EFI, STRU genomics, transferase; 1.60A
{Janibacter SP}
Length = 200
Score = 35.8 bits (82), Expect = 0.014
Identities = 38/224 (16%), Positives = 71/224 (31%), Gaps = 49/224 (21%)
Query: 16 SLQSASSESTTMPTKQP----FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYH 71
L + + +M T +P V+GV+G SGKTT+ + + + D+F+
Sbjct: 12 DLGTENLYFQSMMTGEPTRHVVVMGVSG---SGKTTIAHGVADET---GLEFAEADAFHS 65
Query: 72 SLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINP 131
+Q + + L + G + I + KR + L
Sbjct: 66 PENIATMQRGIPLTDEDRWPWLRSLAEWMDARADAGVSTII---TCSALKRTYRDVLRE- 121
Query: 132 SDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL--DQYA 189
P V + +D ++V R +R G + L Q A
Sbjct: 122 ------------GPPSVD-----FLHLDGPAEVIKGRMSKR----EGHFMPASLLQSQLA 160
Query: 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLG 233
+E + I++ D + +++ LT L
Sbjct: 161 TLEALEPDE--------SGIVL----DLRQPPEQLIERALTWLD 192
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural
genomics, riken structural genomics/proteomics
initiative, RSGI; HET: ATP; 2.80A {Thermus
thermophilus} SCOP: c.37.1.1
Length = 203
Score = 35.6 bits (83), Expect = 0.020
Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQD 67
K P +IG+ G SGK+TV + LR +++ D
Sbjct: 6 KHPIIIGITGNIGSGKSTVAAL----LRSWGYPVLDLD 39
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A
{Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Length = 287
Score = 35.7 bits (81), Expect = 0.021
Identities = 19/107 (17%), Positives = 40/107 (37%), Gaps = 4/107 (3%)
Query: 1 METVIELAD-DFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
M ++ D F + L+ + P + G SGKT++ + I +
Sbjct: 1 MANIVNFTDKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGN 60
Query: 60 RVVLVNQDSF--YHSLTDEKLQNLHDYNFDHPDAFDTELLLSDMEKL 104
+V ++ D+F H DE ++ H + + + + +L
Sbjct: 61 VIV-IDNDTFKQQHPNFDELVKLYEKDVVKHVTPYSNRMTEAIISRL 106
>1wd5_A Hypothetical protein TT1426; structural genomics, riken structural
genomics/proteomics initiative, RSGI, unknown function;
HET: MES; 2.00A {Thermus thermophilus} SCOP: c.61.1.1
Length = 208
Score = 35.3 bits (81), Expect = 0.023
Identities = 13/59 (22%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
Query: 356 QKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPESNIIFLNLIAAPQGIHAICK 414
+ A R V+L+D +A+G S A+S++ +G ++ +A+P+ + +
Sbjct: 112 VRPKAARKGRDVVLVDDGVATGASMEAALSVVFQEGP--RRVVVAVPVASPEAVERLKA 168
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase;
HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A*
2jas_A*
Length = 205
Score = 35.0 bits (80), Expect = 0.029
Identities = 27/190 (14%), Positives = 58/190 (30%), Gaps = 25/190 (13%)
Query: 35 IGVAGGTASGKTTVCNMIISRLRDQRVVL--VNQ----DSFYHSLTDEKLQNLHDYNFDH 88
I + G +GK+T+ I +L + V + + +Y +
Sbjct: 3 IAIFGTVGAGKSTISAEISKKL-GYEIFKEPVEENPYFEQYYKD------LKKTVFKMQI 55
Query: 89 PDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGIL------V 142
L + L++ D K ++ +D
Sbjct: 56 YMLTARSKQLKQAKNLENIIFDRTLLEDPIFMKVNYDLNNVDQTDYNTYIDFYNNVVLEN 115
Query: 143 LHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIE-DVLDQYARFVKPSFEEFIL 201
L P + + I++ + RI++ RGR E + ++Y + ++EEF
Sbjct: 116 LKIPENKLSFDIVIYLRVSTKT-AISRIKK----RGRSEELLIGEEYWETLNKNYEEFYK 170
Query: 202 PSKKYADIII 211
+ +
Sbjct: 171 QNVYDFPFFV 180
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A
{Sulfolobus acidocaldarius} SCOP: c.37.1.1
Length = 194
Score = 34.7 bits (79), Expect = 0.038
Identities = 25/159 (15%), Positives = 50/159 (31%), Gaps = 17/159 (10%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQR--VVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA 91
+ V G GK+TV + L +Q ++N F + +
Sbjct: 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATALKLGYAKDRDEMRK--- 59
Query: 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPR--VR 149
+EK K Q + ++ + I+ V + P +
Sbjct: 60 -------LSVEKQKKLQIDAAKGIAEEARAGGEGYLFIDTHAVIRTPSGYLPGLPSYVIT 112
Query: 150 DLM-SMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQ 187
++ S+ ++ D + LSR+ + T R R+
Sbjct: 113 EINPSVIFLLEADPKIILSRQKRDTT--RNRNDYSDESV 149
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A
{Brucella suis}
Length = 361
Score = 34.6 bits (80), Expect = 0.068
Identities = 13/31 (41%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 35 IGVAGGTASGKTTVCNMIISRL-RDQRVVLV 64
I VAG T SGKTT+ ++ + DQR++ +
Sbjct: 178 IVVAGETGSGKTTLMKALMQEIPFDQRLITI 208
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase,
antibiotic resistance, phosphorylation, mononucleoti
binding fold; HET: ATP; 2.50A {Streptomyces venezuelae}
SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A*
1qhy_A*
Length = 178
Score = 33.6 bits (76), Expect = 0.075
Identities = 28/183 (15%), Positives = 51/183 (27%), Gaps = 33/183 (18%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M T+ +I + GG+++GK+ + + S L + + DS ++ + F
Sbjct: 1 MTTR---MIILNGGSSAGKSGIVRCLQSVLPEPWLAF-GVDSLIEAMPLKMQSAEGGIEF 56
Query: 87 DHPDAFDTELLLSDMEKLKHGQAVS--------IPDYDFKSHKRKQQSRLINPSDVFILE 138
D +E V+ I D F Q+ D+ +L
Sbjct: 57 DADGGVSIGPEFRALEGAWAEGVVAMARAGARIIIDDVFLGGAAAQERWRSFVGDLDVLW 116
Query: 139 GILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEE 198
+ V D V R R R Q + +
Sbjct: 117 -----------------VGVRCDGAVAEGRETAR----GDRVAGMAAKQAYVVHEGVEYD 155
Query: 199 FIL 201
+
Sbjct: 156 VEV 158
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG,
PRK04182 class ME structural genomics, protein structure
initiative; 2.20A {Eubacterium ventriosum}
Length = 201
Score = 33.5 bits (76), Expect = 0.097
Identities = 31/203 (15%), Positives = 67/203 (33%), Gaps = 14/203 (6%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAF 92
+I + SG V + + L +++ D + FD
Sbjct: 7 IIIAIGREFGSGGHLVAKKLAEHY---NIPLYSKELLDEVAKDGRYSKEVLERFDE---- 59
Query: 93 DTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLM 152
+ + + G +S+ + + + F++ G
Sbjct: 60 -KPMNFAFIPVPAGGTTISLEQDIAIRQFNFIRKKANEEKESFVIVGRCAEEILSDNP-N 117
Query: 153 SMKIFVDTDSDVRLSRRIQRDTVERG---RDIEDVLDQYARFVKPSFEEFILPSKKYADI 209
+ F+ D D + R ++R+ V+ ++ + + E S+ Y DI
Sbjct: 118 MISAFILGDKDTKTKRVMEREGVDEKTALNMMKKMDKMRKVYHNFYCESKWGDSRTY-DI 176
Query: 210 IIPRGG-DNDVAIDLIVQHILTK 231
I G D D A D+I+++I ++
Sbjct: 177 CIKIGKVDVDTATDMIIKYIDSR 199
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics,
PSI-2, protein STRU initiative, northeast structural
genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Length = 204
Score = 33.3 bits (77), Expect = 0.11
Identities = 43/231 (18%), Positives = 73/231 (31%), Gaps = 57/231 (24%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTD---EKLQNLHDYNFDHP 89
IG+ G GK+TV M R+ +++ D HS + +
Sbjct: 2 KRIGLTGNIGCGKSTVAQM----FRELGAYVLDADKLIHSFYRKGHPVYEEVV------- 50
Query: 90 DAFDTELLLSDME----KLKHGQAVSIPDYDFK-SHKRKQQSRLINP------------- 131
F +L + KL V FK K ++ + +
Sbjct: 51 KTFGKGILDEEGNIDRKKL--ADIV------FKDEEKLRKLEEITHRALYKEIEKITKNL 102
Query: 132 --SDVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYA 189
+FILE L L + I V +V R ++RG ED ++
Sbjct: 103 SEDTLFILEASL-LVEKGTYKNYDKLIVVYAPYEVCKER-----AIKRGMSEEDFERRWK 156
Query: 190 RFVKPSFEEFILPSKKYADIIIPRGGDNDVA---IDLIVQHILTKLGQHDL 237
+ + EE KYAD +I G + + + + + +H
Sbjct: 157 K--QMPIEEK----VKYADYVIDNSGSIEETYKQVKKVYEELTRDPLEHHH 201
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding
motif, ATP- binding, nucleotide-binding, transferase;
HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB:
3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Length = 260
Score = 33.3 bits (76), Expect = 0.11
Identities = 28/194 (14%), Positives = 61/194 (31%), Gaps = 39/194 (20%)
Query: 42 ASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDTELLLS 99
GK+T + L V+++ D S + + F +
Sbjct: 14 GVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESF---------PVWKEKYEEFIKKSTYR 64
Query: 100 DMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSMKIFVD 159
++ V + D ++ + LIN + + ++ ++
Sbjct: 65 LIDSALKNYWVIV---DDTNYYNSMRRDLINIAKKYNKNYAII--------------YLK 107
Query: 160 TDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEE-FILPSKKYADIIIPRGGDND 218
DV + R I+R E + Y +F +P + + P +II D
Sbjct: 108 ASLDVLIRRNIERG---EKIPNEVIKKMYEKFDEPGKKYKWDEP-----FLIID--TTKD 157
Query: 219 VAIDLIVQHILTKL 232
+ + I + ++ K
Sbjct: 158 IDFNEIAKKLIEKS 171
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion,
hydrolas binding complex; 2.40A {Helicobacter pylori}
SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Length = 330
Score = 33.5 bits (77), Expect = 0.12
Identities = 11/31 (35%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
Query: 35 IGVAGGTASGKTTVCNMIISRL-RDQRVVLV 64
+ V GGT SGKTT I+ + +++R++ +
Sbjct: 174 VIVCGGTGSGKTTYIKSIMEFIPKEERIISI 204
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase,
hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB:
2oaq_1
Length = 511
Score = 33.6 bits (77), Expect = 0.13
Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
Query: 37 VAGGTASGKTTVCNMIISRLR-DQRVVLV 64
V G TASGKTT N I+ + D +VV +
Sbjct: 265 VVGETASGKTTTLNAIMMFIPPDAKVVSI 293
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop,
transferase; HET: ADP; 2.33A {Enterobacteria phage T4}
SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A*
2ia5_A
Length = 301
Score = 33.1 bits (75), Expect = 0.15
Identities = 27/219 (12%), Positives = 59/219 (26%), Gaps = 17/219 (7%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNF 86
M +I G SGK+T I++ +N+D + S+ + ++ + Y
Sbjct: 1 MKK----IILTIGCPGSGKSTWAREFIAKNPG--FYNINRDDYRQSIMAHEERDEYKYTK 54
Query: 87 DHPDAFDT---ELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVL 143
+ S + + V I D + +R + V
Sbjct: 55 KKEGIVTGMQFDTAKSILYGGDSVKGVIISDTNLNPERRLAWETFAKEYGWKVE--HKVF 112
Query: 144 HDP----RVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEF 199
P R+ V D + + ++ + + F
Sbjct: 113 DVPWTELVKRNSKRGTKAVPIDVLRSMYKSMREYLGLPVYNGTPGKPKAVIFDVDGTLAK 172
Query: 200 ILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLC 238
+ Y N + ++L + +G +
Sbjct: 173 MNGRGPYDLEKCDTDVINPMVVELS--KMYALMGYQIVV 209
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure
initiati YORK structural genomics research consortium,
nysgrc; 2.20A {Sinorhizobium meliloti}
Length = 202
Score = 32.7 bits (74), Expect = 0.15
Identities = 34/222 (15%), Positives = 60/222 (27%), Gaps = 45/222 (20%)
Query: 14 DLSLQSASSESTTMPTKQPFVI-GVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHS 72
+S++ S + V+ GV+G SGK++V I + D+ +
Sbjct: 2 VMSIEYKSEAAAVRRFPGSIVVMGVSG---SGKSSVGEAIAEAC---GYPFIEGDALHPP 55
Query: 73 LTDEKLQNLHDYNFDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPS 132
K+ D L + E+L + V + K R + R P
Sbjct: 56 ENIRKMSEGIPLT----DDDRWPWLAAIGERLASREPVVVSCSALKRSYR-DKLRESAPG 110
Query: 133 DVFILEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFV 192
+ +F+ V R R + Q
Sbjct: 111 GLAF-------------------VFLHGSESVLAERMHHRT--GHFMPSSLLQTQLETLE 149
Query: 193 KPSFEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
P E + + D + IV+ L L +
Sbjct: 150 DPRGEV--------RTVAV----DVAQPLAEIVREALAGLAR 179
>1xjc_A MOBB protein homolog; structural genomics, midwest center for
structural GEN PSI, protein structure initiative, MCSG;
2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Length = 169
Score = 31.9 bits (72), Expect = 0.24
Identities = 13/54 (24%), Positives = 17/54 (31%), Gaps = 7/54 (12%)
Query: 24 STTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTD 75
S M V V G SGKTT+ ++ + RV V
Sbjct: 1 SNAMN-----VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKHHGHGGEPAR 49
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed
alpha-beta fold, elongated beta-sheet, walker A motif,
P-loop structural motif; 1.90A {Escherichia coli} SCOP:
c.37.1.10 PDB: 1p9n_A
Length = 174
Score = 32.1 bits (72), Expect = 0.24
Identities = 17/117 (14%), Positives = 44/117 (37%), Gaps = 9/117 (7%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDA 91
++ A + +GKTT+ +I L + R L+ H+ D + +++ A
Sbjct: 8 LLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIK-----HTHHDMDVDKPGKDSYELRKA 62
Query: 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRV 148
+ +++ + + PD + + + D+ ++EG ++
Sbjct: 63 GAAQTIVASQQ--RWALMTETPDEEELDLQFLASRMDTSKLDLILVEGFKHEEIAKI 117
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS
protein structure initiative, PSI, joint center for
structu genomics; HET: CIT; 1.60A {Thermotoga maritima}
SCOP: a.24.13.1 c.37.1.10
Length = 306
Score = 32.5 bits (75), Expect = 0.25
Identities = 19/70 (27%), Positives = 29/70 (41%), Gaps = 2/70 (2%)
Query: 2 ETVIELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ-- 59
E + + + + +P + PFVI V G +GKTT C + D+
Sbjct: 74 EKDGDALESLKEIILEILNFDTKLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGK 133
Query: 60 RVVLVNQDSF 69
VVL D+F
Sbjct: 134 SVVLAAADTF 143
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the
strand order 23145, walker A motif, cholesterol
biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Length = 202
Score = 32.3 bits (73), Expect = 0.25
Identities = 9/38 (23%), Positives = 15/38 (39%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64
+ V+ +G SGK V + SRL ++
Sbjct: 6 LGGAPRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVL 43
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB);
structural genomics, PSI, protein structure initiative;
2.10A {Archaeoglobus fulgidus}
Length = 171
Score = 31.9 bits (72), Expect = 0.27
Identities = 8/28 (28%), Positives = 17/28 (60%)
Query: 32 PFVIGVAGGTASGKTTVCNMIISRLRDQ 59
++ + G + SGKTT+ ++ LR++
Sbjct: 2 SLILSIVGTSDSGKTTLITRMMPILRER 29
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer,
immunology, signaling protein; HET: GDP; 1.95A {Mus
musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A*
1tq2_A*
Length = 413
Score = 32.7 bits (74), Expect = 0.28
Identities = 13/58 (22%), Positives = 22/58 (37%)
Query: 5 IELADDFADDLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVV 62
IEL + SA S++ + V G T SGK++ N + ++
Sbjct: 42 IELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGA 99
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein
struct initiative, northeast structural genomics
consortium, NESG, function; 2.40A {Bacillus halodurans}
SCOP: c.37.1.25
Length = 189
Score = 31.8 bits (72), Expect = 0.32
Identities = 22/160 (13%), Positives = 48/160 (30%), Gaps = 25/160 (15%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKL--QNLHDYNFDHPDA 91
+ + G GK+T C + ++L + D H + +
Sbjct: 4 LYIITGPAGVGKSTTCKRLAAQL--DNSAYIEGDIINHMVVGGYRPPWESDELLALTWKN 61
Query: 92 FDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDL 151
T+L ++ L V + F + + + D D+
Sbjct: 62 I-TDLTVNF---LLAQNDVVLDYIAFPDEAEA------------LAQTVQAKVD----DV 101
Query: 152 MSMKIFVDTDSDVRLSRRIQRDTVE-RGRDIEDVLDQYAR 190
I + T+ + L R R E G ++++++
Sbjct: 102 EIRFIILWTNREELLRRDALRKKDEQMGERCLELVEEFES 141
>2vap_A FTSZ, cell division protein FTSZ homolog 1; polymerization,
tubulin homolog, GTPase, septation, cell cycle,
GTP-binding; HET: GDP; 1.70A {Methanocaldococcus
jannaschii} SCOP: c.32.1.1 d.79.2.1 PDB: 1w59_A 1w58_1*
1w5a_A* 1w5b_A* 1fsz_A* 1w5e_A*
Length = 364
Score = 31.5 bits (72), Expect = 0.64
Identities = 14/86 (16%), Positives = 33/86 (38%), Gaps = 10/86 (11%)
Query: 1 METVIELADDFADDLSLQSASSESTTMPTKQPF-----VIGVAGGTASGKTTVCNMIISR 55
++ V+E + L+ + + + Q V+G G G T+ + +
Sbjct: 4 LKNVLEEGSKLEEFNELELSPEDKELLEYLQQTKAKITVVGCGGA---GNNTITRLKMEG 60
Query: 56 LRDQRVVLVNQDS--FYHSLTDEKLQ 79
+ + V +N D+ + D+K+
Sbjct: 61 IEGAKTVAINTDAQQLIRTKADKKIL 86
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter,
transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Length = 587
Score = 31.0 bits (71), Expect = 0.99
Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRD 58
++ V G T SGK+T+ N+ I RL D
Sbjct: 371 LVAVLGETGSGKSTLMNL-IPRLID 394
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding
protein; 2.30A {Archaeoglobus fulgidus}
Length = 221
Score = 30.3 bits (69), Expect = 1.0
Identities = 7/35 (20%), Positives = 14/35 (40%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64
+ + G SGKT + I R+ ++ +
Sbjct: 28 SGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGA 62
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and
beta protein; HET: GSP; 1.90A {Methanocaldococcus
jannaschii} PDB: 2hf8_A*
Length = 226
Score = 30.3 bits (69), Expect = 1.1
Identities = 8/35 (22%), Positives = 13/35 (37%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64
G SGKT + +I L+D+ +
Sbjct: 36 HGVVAFDFMGAIGSGKTLLIEKLIDNLKDKYKIAC 70
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer,
nucleotide twinning, protein complex, protein transport;
HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1
c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D
2iyl_D* 2cnw_D* 2j7p_D*
Length = 304
Score = 30.6 bits (70), Expect = 1.2
Identities = 12/72 (16%), Positives = 27/72 (37%), Gaps = 4/72 (5%)
Query: 2 ETVIELADDFADDLSLQSASS--ESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
E ++ + + +L+ + + V+ V G GKTT + ++
Sbjct: 70 EKLVGMLEPDERRATLRKLGFNPQKPKPVEPKGRVVLVVGVNGVGKTTTIAKLGRYYQNL 129
Query: 60 --RVVLVNQDSF 69
+V+ D+F
Sbjct: 130 GKKVMFCAGDTF 141
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway,
P-loop protein, transferase; 1.8A {Erwinia chrysanthemi}
SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Length = 173
Score = 29.8 bits (68), Expect = 1.2
Identities = 12/97 (12%), Positives = 32/97 (32%), Gaps = 21/97 (21%)
Query: 145 DPRVRDLMSMK---IFVDTDSDVRLSRRIQRDTVERGR------DIEDVLDQYARFVKPS 195
+ R M +++ ++ L+ R+Q R I + ++ R +
Sbjct: 84 LEQNRQFMRAHGTVVYLFAPAEE-LALRLQASLQAHQRPTLTGRPIAEEMEAVLREREAL 142
Query: 196 FEEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKL 232
+++ A ++ D IV ++ +
Sbjct: 143 YQDV-------AHYVV----DATQPPAAIVCELMQTM 168
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase,
ultrahigh resolution, protein transport; 1.10A {Thermus
aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B*
1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B*
2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A
1ffh_A 2ng1_A*
Length = 295
Score = 30.2 bits (69), Expect = 1.3
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 22 SESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQD 67
E+ K + + G SGKTT + + + R +LV D
Sbjct: 88 GEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting,
simibi class GTPase, GTP-BIND membrane,
nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A
2xxa_B* 1fts_A
Length = 503
Score = 30.1 bits (68), Expect = 1.5
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 2/45 (4%)
Query: 27 MPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
+ K PFVI + G GKTT + + Q V+L D+F
Sbjct: 288 VEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTF 332
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.5 bits (65), Expect = 1.5
Identities = 8/24 (33%), Positives = 16/24 (66%), Gaps = 2/24 (8%)
Query: 1 METVIEL-ADDFADDLSLQSASSE 23
++ ++L ADD A L+++ A+ E
Sbjct: 25 LQASLKLYADDSAPALAIK-ATME 47
>1usy_A ATP phosphoribosyltransferase regulatory subunit; aminoacyl-tRNA
synthetase; HET: HIS; 2.52A {Thermotoga maritima} SCOP:
d.104.1.1 PDB: 1usy_C*
Length = 275
Score = 30.0 bits (68), Expect = 1.6
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 179 RDIEDVLDQYARFVKPSFEEFILPSKKYADII 210
D E V Y++ K F F +P+ + A+
Sbjct: 4 LDFEKVFSFYSKATKKGFSPFFVPALEKAEEP 35
>2og2_A Putative signal recognition particle receptor; nucleotide-binding,
protein transport; 2.00A {Arabidopsis thaliana}
Length = 359
Score = 30.0 bits (68), Expect = 1.7
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
++ + S + ++P VI + G GKTT + RL+++ +V++ D+F
Sbjct: 139 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 196
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism,
metal-binding, cell cycle kinase, mitosis, cytoplasm,
magnesium, transferase; 2.10A {Homo sapiens} PDB:
2wqn_A*
Length = 310
Score = 30.0 bits (68), Expect = 1.7
Identities = 8/33 (24%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 136 ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL 166
+ + +H RV RD+ +F+ V+L
Sbjct: 145 LCSALEHMHSRRVMHRDIKPANVFITATGVVKL 177
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein
translocation, GTP-binding, nucleotide-binding, protein
transport; 1.75A {Arabidopsis thaliana}
Length = 302
Score = 29.8 bits (68), Expect = 1.7
Identities = 14/58 (24%), Positives = 29/58 (50%), Gaps = 2/58 (3%)
Query: 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSF 69
++ + S + ++P VI + G GKTT + RL+++ +V++ D+F
Sbjct: 82 EMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTF 139
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A
{Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A
1ko5_A* 1ko8_A* 1kof_A*
Length = 175
Score = 29.2 bits (65), Expect = 1.8
Identities = 32/211 (15%), Positives = 69/211 (32%), Gaps = 41/211 (19%)
Query: 26 TMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYN 85
+ + + G + SGK+ V + + +L ++ D + EK+ + N
Sbjct: 2 STTNHDHHIYVLMGVSGSGKSAVASEVAHQL---HAAFLDGDFLHPRRNIEKMASGEPLN 58
Query: 86 FDHPDAFDTELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHD 145
D + + L ++ VS+ + R NP+ F
Sbjct: 59 DDDRKPW-LQALNDAAFAMQRTNKVSLIVCSALKKHYRDLLREGNPNLSF---------- 107
Query: 146 PRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVL--DQYARFVKPSFEEFILPS 203
I++ D DV SR R +G + + Q+ +P +E
Sbjct: 108 ----------IYLKGDFDVIESRLKAR----KGHFFKTQMLVTQFETLQEPGADE----- 148
Query: 204 KKYADIIIPRGGDNDVAIDLIVQHILTKLGQ 234
+++ D D ++ +V + + +
Sbjct: 149 --TDVLVV----DIDQPLEGVVASTIEVIKK 173
>1w30_A PYRR bifunctional protein; transferase, glycosyltransferase, PSI,
protein structure initiative, TB structural genomics
consortium, TB; 1.9A {Mycobacterium tuberculosis} SCOP:
c.61.1.1
Length = 201
Score = 29.3 bits (66), Expect = 1.9
Identities = 11/38 (28%), Positives = 17/38 (44%)
Query: 358 LPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
I V+L+D +L SG S A+ + G P +
Sbjct: 106 PAGGIDDALVILVDDVLYSGRSVRSALDALRDVGRPRA 143
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein
transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Length = 320
Score = 29.8 bits (68), Expect = 2.0
Identities = 9/67 (13%), Positives = 26/67 (38%), Gaps = 4/67 (5%)
Query: 7 LADDFADDLSLQSASSESTTMP--TKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVV 62
L + + +++ + + + + G +GKTT + + + +V+
Sbjct: 78 LVESLYQAYTDNDWTNKKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVL 137
Query: 63 LVNQDSF 69
+ D+F
Sbjct: 138 IAAADTF 144
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT
structure initiative, midwest center for structural
genomic unknown function; 1.95A {Pseudomonas aeruginosa}
SCOP: d.107.1.3
Length = 148
Score = 28.9 bits (64), Expect = 2.1
Identities = 14/70 (20%), Positives = 23/70 (32%), Gaps = 4/70 (5%)
Query: 138 EGILVLHDPRVRDLMSMKIFV--DTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPS 195
E L + D +D S+ IF + S I RD + D + + +
Sbjct: 10 EADLEIPDA-WQD-QSINIFKLPASGPAREASFVISRDASQGDAPFADYVARQLENAEKQ 67
Query: 196 FEEFILPSKK 205
F L +
Sbjct: 68 LPGFKLHKRW 77
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics
consortium, SGC, immune system; HET: GDP; 2.21A {Homo
sapiens} PDB: 3v70_A*
Length = 247
Score = 29.3 bits (65), Expect = 2.4
Identities = 8/39 (20%), Positives = 17/39 (43%)
Query: 17 LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISR 55
S+ E+ + + + G T +GK+ N I+ +
Sbjct: 6 HHSSGRENLYFQGESTRRLILVGRTGAGKSATGNSILGQ 44
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis,
ATP-binding, nucleotide-binding, poxvirus, transferase;
HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB:
2w0s_A*
Length = 204
Score = 29.2 bits (66), Expect = 2.5
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 39 GGTASGKTTVCNMIISRLRDQRVVLV 64
G SGKTT C I+ + + +
Sbjct: 11 GLDKSGKTTQCMNIMESIPANTIKYL 36
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP,
transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP:
c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A*
1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A*
1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A*
1e9f_A*
Length = 215
Score = 29.1 bits (66), Expect = 2.7
Identities = 9/42 (21%), Positives = 19/42 (45%), Gaps = 2/42 (4%)
Query: 25 TTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLV 64
+ M ++ +I + G +GK+T ++ L R L+
Sbjct: 2 SHMAARRGALIVLEGVDRAGKSTQSRKLVEALCAAGHRAELL 43
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside
modification, isopentenyl-tRNA transferase,
transferase-RNA complex; 2.50A {Escherichia coli k-12}
PDB: 2zxu_A* 2zm5_A
Length = 316
Score = 29.4 bits (67), Expect = 2.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Query: 24 STTMPTKQPFVIGVAGGTASGKT 46
S P I + G TASGKT
Sbjct: 2 SDISKASLPKAIFLMGPTASGKT 24
>1vdm_A Purine phosphoribosyltransferase; structural genomics, riken
structural genomics/proteomics initiative, RSGI; 2.50A
{Pyrococcus horikoshii} SCOP: c.61.1.1
Length = 153
Score = 28.4 bits (64), Expect = 2.8
Identities = 8/51 (15%), Positives = 21/51 (41%)
Query: 344 HREGNSGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPE 394
+ + +I + D+ + V+++D + +G + I + G E
Sbjct: 63 GIDERGEKPVITIPIHGDLKDKRVVIVDDVSDTGKTLEVVIEEVKKLGAKE 113
>2vli_A Antibiotic resistance protein; transferase, tunicamycin,
phosphotransferase; 1.95A {Deinococcus radiodurans}
Length = 183
Score = 28.8 bits (64), Expect = 2.8
Identities = 8/31 (25%), Positives = 13/31 (41%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRV 61
+ +I + G GKT + + RL V
Sbjct: 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M
domain, RNA-binding, signal sequence-binding,
helix-turn-helix, protein targeting; 3.20A {Thermus
aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB:
2iy3_A
Length = 425
Score = 29.4 bits (67), Expect = 3.1
Identities = 12/48 (25%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Query: 22 SESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQD 67
E+ K + + G SGKTT + + + R +LV D
Sbjct: 88 GEARLPVLKDRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAAD 135
>2j69_A Bacterial dynamin-like protein; FZO, FZL, GTPase, hydrolase; 3.0A
{Nostoc punctiforme} PDB: 2j68_A 2w6d_A*
Length = 695
Score = 29.6 bits (65), Expect = 3.1
Identities = 8/24 (33%), Positives = 12/24 (50%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMII 53
+ F + V G GK+T N +I
Sbjct: 67 QGVFRLLVLGDMKRGKSTFLNALI 90
>4ayb_A DNA-directed RNA polymerase; transferase, multi-subunit,
transcription; 3.20A {Sulfolobus shibatae} PDB: 2wb1_A
2y0s_A 2waq_A 4b1o_A 4b1p_W 2pmz_A 3hkz_A
Length = 880
Score = 29.4 bits (66), Expect = 3.2
Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 8/82 (9%)
Query: 292 TEKQIITPT------GSVYTGVVFCRRLCGISIIRSGESMENALRACCKGIKIGK--ILI 343
K IITP G+ + L + + + E + L I +G+ IL
Sbjct: 482 VHKNIITPRYGGPIIGAAQDYISGAYLLTVKTTLLTKEEAQQILGVADVKIDLGEPAILA 541
Query: 344 HREGNSGRQLIYQKLPADISSR 365
RE +G+Q++ LP D +
Sbjct: 542 PREYYTGKQVVSAFLPKDFNFH 563
>1dek_A Deoxynucleoside monophosphate kinase; transferase,
phosphotransferase; HET: DGP; 2.00A {Enterobacteria
phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Length = 241
Score = 28.7 bits (63), Expect = 3.3
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 34 VIGVAGGTASGKTTVCNMIISRLRDQRVVLVN 65
+I ++G SGK T + I+S + L
Sbjct: 3 LIFLSGVKRSGKDTTADFIMSNYSAVKYQLAG 34
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION
channel, transport protein, casse protein; 2.00A {Homo
sapiens} PDB: 2onj_A* 2hyd_A
Length = 578
Score = 29.1 bits (66), Expect = 3.5
Identities = 24/104 (23%), Positives = 37/104 (35%), Gaps = 42/104 (40%)
Query: 34 VIGVAGGTASGKTTVCNMI----------------------ISRLRDQRVVLVNQDSF-- 69
+ G + GK+T+ N+I LR+Q + LV QD+
Sbjct: 369 TVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ-IGLVQQDNILF 427
Query: 70 ---------YHSL--TDE------KLQNLHDYNFDHPDAFDTEL 96
TDE K+ N HD+ + P +DTE+
Sbjct: 428 SDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEV 471
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG,
MTBI, transferase; HET: ATM; 1.85A {Staphylococcus
aureus subsp} PDB: 4dwj_A* 4f4i_A
Length = 229
Score = 28.4 bits (64), Expect = 3.9
Identities = 12/51 (23%), Positives = 17/51 (33%)
Query: 14 DLSLQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLV 64
+ + I G SGKTTV N + RL V++
Sbjct: 8 SSGVDLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex,
transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Length = 460
Score = 29.0 bits (64), Expect = 3.9
Identities = 10/48 (20%), Positives = 22/48 (45%), Gaps = 3/48 (6%)
Query: 23 ESTTMPTKQPFVIGVAGGTASGKTTVCNMIIS---RLRDQRVVLVNQD 67
E M + + + GG+ +GKT++ + S + + + +N D
Sbjct: 129 EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD 176
>4apc_A Serine/threonine-protein kinase NEK1; transferase; 2.10A {Homo
sapiens}
Length = 350
Score = 28.9 bits (65), Expect = 4.0
Identities = 13/52 (25%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 122 RKQQSRLINPSDVF-----ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL 166
Q+ L + I + +HD ++ RD+ S IF+ D V+L
Sbjct: 115 NAQKGVLFQEDQILDWFVQICLALKHVHDRKILHRDIKSQNIFLTKDGTVQL 166
>2a19_B Interferon-induced, double-stranded RNA-activated kinase;
transferase, protein biosynthesis, protein synthesis
transferase complex; HET: TPO ANP; 2.50A {Homo sapiens}
PDB: 2a1a_B*
Length = 284
Score = 28.8 bits (65), Expect = 4.0
Identities = 10/52 (19%), Positives = 22/52 (42%), Gaps = 7/52 (13%)
Query: 122 RKQQSRLINPSDVF-----ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL 166
K++ ++ I +G+ +H ++ RDL IF+ V++
Sbjct: 112 EKRRGEKLDKVLALELFEQITKGVDYIHSKKLINRDLKPSNIFLVDTKQVKI 163
>1gg4_A UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-
diaminopimelate-D-alanyl-D-alanyl ligase...; alpha/beta
sheet; 2.30A {Escherichia coli} SCOP: c.98.1.1 c.59.1.1
c.72.2.1
Length = 452
Score = 28.7 bits (65), Expect = 4.3
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69
V+ + G +SGKT+V M + L L +
Sbjct: 99 PARVVALTG--SSGKTSVKEMTAAILSQCGNTLYTAGNL 135
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding,
nucleotide-binding, nucleotidyltransferase, tRNA
processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A
3crr_A
Length = 323
Score = 28.6 bits (65), Expect = 4.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Query: 29 TKQPFVIGVAGGTASGKT 46
+ P I + G TA+GKT
Sbjct: 2 SSLPPAIFLMGPTAAGKT 19
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET:
ATP; 2.37A {Humulus lupulus}
Length = 339
Score = 28.7 bits (64), Expect = 4.4
Identities = 6/31 (19%), Positives = 14/31 (45%), Gaps = 1/31 (3%)
Query: 16 SLQSASSESTTMPTKQPFVIGVAGGTASGKT 46
+ + S K+ ++ + G T +GK+
Sbjct: 25 TTTTNVSLRRQRHRKEK-LLVLMGATGTGKS 54
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant,
catalytic domain, synthetic inhibitor, TRAN transferase
inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB:
4g34_A*
Length = 299
Score = 28.5 bits (64), Expect = 4.7
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 136 ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL 166
I E + LH + RDL IF D V++
Sbjct: 127 IAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKV 159
>3ohp_A Hypoxanthine phosphoribosyltransferase; structural genomics, PSI-2,
protein structure initiative, NE SGX research center for
structural genomics; 2.04A {Vibrio cholerae} PDB:
1g9s_A* 1g9t_A* 1grv_A 1j7j_A
Length = 177
Score = 27.8 bits (63), Expect = 4.9
Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
S I + L DI + VLL++ I+ +GN+ K ++ + P+S
Sbjct: 76 SRDVRILKDLDDDIKGKDVLLVEDIIDTGNTLNKVKEILALRE-PKS 121
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP;
1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A*
2wwi_A*
Length = 212
Score = 27.9 bits (63), Expect = 5.1
Identities = 10/43 (23%), Positives = 18/43 (41%), Gaps = 2/43 (4%)
Query: 24 STTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLV 64
T K+ I G SGK+T +++ L++ V +
Sbjct: 2 HMTDDKKKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEVKHL 44
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase,
protein-targeting, transport protein; HET: GDP; 1.97A
{Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Length = 328
Score = 28.4 bits (64), Expect = 5.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Query: 6 ELADDFADDLS-LQSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ--RVV 62
+ + ++ L + ++P+VI G SGKTT + + L++ VV
Sbjct: 102 AVKEAVSEILETSRRIDLIEEIRKAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVV 161
Query: 63 LVNQDSF 69
+ D+F
Sbjct: 162 IAASDTF 168
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1;
winged-helix domain, helix-turn-helix, AAA+ ATPase
domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A
{Sulfolobus solfataricus}
Length = 386
Score = 28.5 bits (63), Expect = 5.3
Identities = 28/140 (20%), Positives = 50/140 (35%), Gaps = 21/140 (15%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQ-----RVVLVN---QDSFYHSLTDEKLQNLHDY 84
F+ G+ G +GKT V ++S+L + + V +N D+ Y L L D
Sbjct: 49 FIYGLTG---TGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVL--ADLLESLDV 103
Query: 85 NFDHPDAFDTELLLSDMEKL--KHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEG--- 139
EL ++ + Q V + D K+ L S +
Sbjct: 104 KVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYNDDILYKLSRINSEVNKSK 163
Query: 140 ---ILVLHDPRVRDLMSMKI 156
I + +D + DL+ ++
Sbjct: 164 ISFIGITNDVKFVDLLDPRV 183
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins
(A/B), protein binding, transferase, phosphotransferase;
HET: ADP; 1.76A {Homo sapiens} PDB: 3iik_A 3iil_A*
3iim_A* 1rkb_A
Length = 180
Score = 27.7 bits (61), Expect = 5.5
Identities = 28/204 (13%), Positives = 61/204 (29%), Gaps = 40/204 (19%)
Query: 35 IGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSFYHSLTDEKLQNLHDYNFDHPDAFDT 94
I + G GKTT+ + S+ Y ++ D + +D +
Sbjct: 14 ILLTGTPGVGKTTLGKELASKS----------GLKYINVGDLAREEQLYDGYD----EEY 59
Query: 95 ELLLSDMEKLKHGQAVSIPDYDFKSHKRKQQSRLINPSDVFILEGILVLHDPRVRDLMSM 154
+ + D + + + V + R +
Sbjct: 60 DCPILDED-----------------RVVDELDNQMREGGVIVDYHGCDFFPERWFHI--- 99
Query: 155 KIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSFEEFILPSKKYADIIIPRG 214
+ TD++V R R E + + D + + +EE K+ +P
Sbjct: 100 VFVLRTDTNVLYERLETRGYNE--KKLTDNIQ--CEIFQVLYEEATASYKEEIVHQLPSN 155
Query: 215 GDNDVA--IDLIVQHILTKLGQHD 236
++ +D I++ I + H+
Sbjct: 156 KPEELENNVDQILKWIEQWIKDHN 179
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A
{Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A*
1tmk_A*
Length = 216
Score = 28.0 bits (63), Expect = 5.5
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 43 SGKTTVCNMIISRLRDQRVVL 63
+GKTT CN++ +L+ +L
Sbjct: 16 TGKTTQCNILYKKLQPNCKLL 36
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding,
ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE
PG4; 1.60A {Sulfolobus tokodaii}
Length = 213
Score = 28.0 bits (63), Expect = 5.6
Identities = 6/26 (23%), Positives = 13/26 (50%)
Query: 39 GGTASGKTTVCNMIISRLRDQRVVLV 64
G SGK++ ++ + +R V +
Sbjct: 11 GIDGSGKSSQATLLKDWIELKRDVYL 36
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase
(phospho), phosphatase, hydrolase (phosp glycolysis,
bifunctional enzyme; HET: AGS; 2.00A {Rattus
norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A*
2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Length = 469
Score = 28.4 bits (63), Expect = 5.7
Identities = 10/40 (25%), Positives = 16/40 (40%)
Query: 18 QSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLR 57
+S+ T P +I + G A GKT + + L
Sbjct: 25 ALHASQRGVCMTNCPTLIVMVGLPARGKTYISKKLTRYLN 64
>1yfz_A Hypoxanthine-guanine phosphoribosyltransferase; protein-nucleotide
complex; HET: IMP; 2.20A {Thermoanaerobacter
tengcongensis} SCOP: c.61.1.1 PDB: 1r3u_A*
Length = 205
Score = 27.9 bits (63), Expect = 5.8
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
SG I + DI + VL+++ I+ SG + +L + P S
Sbjct: 103 SGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRK-PRS 148
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease
protein; asymmetric dimer, tetramer, P-glycoprotein;
HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Length = 243
Score = 28.2 bits (64), Expect = 5.8
Identities = 21/104 (20%), Positives = 34/104 (32%), Gaps = 43/104 (41%)
Query: 34 VIGVAGGTASGKTTVCNMI----------------------ISRLRDQRVVLVNQDSF-- 69
+I AG + GK+T+ +++ + R Q + V+QDS
Sbjct: 30 IIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQ-IGFVSQDSAIM 88
Query: 70 ---------Y---HSLTDE------KLQNLHDYNFDHPDAFDTE 95
Y TDE L + + PD +TE
Sbjct: 89 AGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTE 132
>2geb_A Hypoxanthine-guanine phosphoribosyltransferase; HGPRT, mutant,
inhibitor design, selectivity; 1.70A {Thermoanaerobacter
tengcongensis}
Length = 185
Score = 27.8 bits (63), Expect = 6.0
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
SG I + DI + VL+++ I+ SG + +L + P S
Sbjct: 83 SGIVKIIKDHDIDIEGKDVLIVEDIIDSGLTLAYLRETLLGRK-PRS 128
>1pzm_A HGPRT, hypoxanthine-guanine phosphoribosyltransferase; HET: 5GP;
2.10A {Leishmania tarentolae} SCOP: c.61.1.1
Length = 211
Score = 28.0 bits (63), Expect = 6.5
Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
SG+ + + + +RH++L++ I+ S + + +L+K P S
Sbjct: 103 SGQVRMLLDVRDSVENRHIMLVEDIVDSAITLQYLMRFMLAKK-PAS 148
>1tc1_A Protein (hypoxanthine phosphoribosyltransferase);
transferase,phosphoribosyltransferase, purine salvage,
nucleotide metabolism; HET: FMB MES; 1.41A {Trypanosoma
cruzi} SCOP: c.61.1.1 PDB: 1tc2_A* 1p19_A* 1p18_A*
1p17_A* 1i0l_A* 1i14_A* 1i0i_A* 1i13_A*
Length = 220
Score = 27.6 bits (62), Expect = 6.7
Identities = 9/47 (19%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
SG+ + I HVL+++ I+ + + + ++ P S
Sbjct: 88 SGQVRMLLDTRHSIEGHHVLIVEDIVDTALTLNYLYHMYFTRR-PAS 133
>2xbu_A Hypoxanthine-guanine phosphoribosyltransferase;
glycosyltransferase, purine salvage, FLIP pepti; HET:
5GP; 1.80A {Saccharomyces cerevisiae} PDB: 2jkz_A*
2jky_A*
Length = 221
Score = 27.8 bits (61), Expect = 6.8
Identities = 7/42 (16%), Positives = 21/42 (50%)
Query: 353 LIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPE 394
+ Y++ D+ ++VL++D + + + A+S + +
Sbjct: 92 IDYEQCKLDLVGKNVLIVDEVDDTRTTLHYALSELEKDAAEQ 133
>2am1_A SP protein, UDP-N-acetylmuramoylalanine-D-glutamyl-lysine-D-A
alanine ligase, MURF protein; HET: 1LG; 2.50A
{Streptococcus pneumoniae} PDB: 2am2_A*
Length = 454
Score = 27.9 bits (63), Expect = 7.3
Identities = 10/39 (25%), Positives = 17/39 (43%), Gaps = 2/39 (5%)
Query: 31 QPFVIGVAGGTASGKTTVCNMIISRLRDQRVVLVNQDSF 69
V V G ++GKTT +M+ L + Q ++
Sbjct: 99 TVDVFAVTG--SNGKTTTKDMLAHLLSTRYKTYKTQGNY 135
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics
consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A
{Homo sapiens}
Length = 197
Score = 27.5 bits (62), Expect = 7.4
Identities = 7/42 (16%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Query: 18 QSASSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQ 59
S+ E+ ++ V+ G + G++ + N ++S+ ++
Sbjct: 7 HSSGRENLYFQGRKTLVL--IGASGVGRSHIKNALLSQNPEK 46
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P;
hydrolase, type IV secretion, conjugation; 2.35A
{Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Length = 392
Score = 28.0 bits (62), Expect = 8.0
Identities = 33/266 (12%), Positives = 76/266 (28%), Gaps = 29/266 (10%)
Query: 33 FVIGVAGGTASGKTTVCNMIISRLRDQ--RVVLVNQDSFYHSLT------------DEKL 78
++ G +GK+ M++ R Q RV++++ + Y + E
Sbjct: 39 TILAKPG---AGKSFTAKMLLLREYMQGSRVIIIDPEREYKEMCRKLGGVWINCTGGEGK 95
Query: 79 QNLHDYNFDHPDAFDTELLLSDMEKLKHGQAV-SIPDYDFKSHKRKQQSRLINP-SDVFI 136
N + D E + H Q + + + +++ L + +V+
Sbjct: 96 INPLQVRLRPVEEEDEENAVFQSPLALHIQTLRTFFSLYLRDLTDTEKAALEDALVEVYK 155
Query: 137 LEGILVLHDPRVRDLMSMKIFVDTDSDVRLSRRIQRDTVERGRDIEDVLDQYARFVKPSF 196
GI DPR + + + E + +L + A
Sbjct: 156 EAGITWDTDPRGVPNDKWPTVKE---LYEYCVKKAEENPETYGRLSVLLKRAAEGADSYL 212
Query: 197 ---EEFILPSKKYADIIIPRGGDNDVAIDLIVQHILTKLGQHDLCKIYSNVDVIVSTFQI 253
+ + + + + + + + L + V+V +
Sbjct: 213 WAGPTAVEADSDFIVFDVHDLQNAEDQVKRAQYFNVLSFAWNILERDRRERTVLV----V 268
Query: 254 RGMHTLIRDVTTTTHDFVFYADRLIR 279
L+ T F+ + IR
Sbjct: 269 DEAWMLVDPQTPQAIAFLRDTSKRIR 294
>3o7m_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, salvage of nucleosides and
nucleotides; HET: GOL; 1.98A {Bacillus anthracis}
Length = 186
Score = 27.4 bits (62), Expect = 8.2
Identities = 7/47 (14%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
+G+ + + + +I+ ++V++++ I+ SG + P++
Sbjct: 79 TGKVKLLKDIDVNITGKNVIVVEDIIDSGLTLHFLKDHFFMHK-PKA 124
>3hvu_A Hypoxanthine phosphoribosyltransferase; hypoxanthine-guanine
phosphoribosyltransferase, 2-(N-morphol ethanesulfonic
acid (MES), IDP01892; HET: MES; 1.95A {Bacillus
anthracis str} PDB: 3h83_A* 3kb8_A*
Length = 204
Score = 27.5 bits (62), Expect = 8.6
Identities = 10/47 (21%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Query: 349 SGRQLIYQKLPADISSRHVLLLDPILASGNSAVKAISLILSKGVPES 395
+G I + L + R +L+++ I+ SG + + L + +S
Sbjct: 101 TGEVKILKDLDTSVEGRDILIVEDIIDSGLTLSYLVDLFKYRK-AKS 146
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase,
phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus
musculus}
Length = 332
Score = 27.5 bits (61), Expect = 8.6
Identities = 11/33 (33%), Positives = 15/33 (45%), Gaps = 2/33 (6%)
Query: 136 ILEGILVLHDPRV--RDLMSMKIFVDTDSDVRL 166
I E + LH + RDL IF D V++
Sbjct: 173 IAEAVEFLHSKGLMHRDLKPSNIFFTMDDVVKV 205
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.8 bits (61), Expect = 8.7
Identities = 8/40 (20%), Positives = 13/40 (32%), Gaps = 1/40 (2%)
Query: 21 SSESTTMPTKQPFVIGVAGGTASGKTTVCNMIISRLRDQR 60
S++ T + I + G GKTT +
Sbjct: 2 STDKTDVKMG-VLRIYLDGAYGIGKTTAAEEFLHHFAITP 40
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein,
ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus
radiodurans} PDB: 3gp8_A 3gpl_A*
Length = 574
Score = 27.8 bits (62), Expect = 10.0
Identities = 6/31 (19%), Positives = 11/31 (35%), Gaps = 1/31 (3%)
Query: 30 KQPFVIGVAGGTASGKTTVCNMIISRLRDQR 60
V+ + GG +GK+T +
Sbjct: 203 GHRLVV-LTGGPGTGKSTTTKAVADLAESLG 232
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.139 0.402
Gapped
Lambda K H
0.267 0.0707 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,312,259
Number of extensions: 470448
Number of successful extensions: 1564
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1499
Number of HSP's successfully gapped: 169
Length of query: 473
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 376
Effective length of database: 3,993,456
Effective search space: 1501539456
Effective search space used: 1501539456
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.5 bits)