BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035514
(482 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3MKT|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKT|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|A Chain A, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
pdb|3MKU|B Chain B, Structure Of A Cation-Bound Multidrug And Toxin Compound
Extrusion (Mate) Transporter
Length = 460
Score = 90.5 bits (223), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 100/434 (23%), Positives = 189/434 (43%), Gaps = 30/434 (6%)
Query: 29 RTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSV-IGTFSFGLLL 87
+ E + K+A PV+ + G I G + I++++ +I+ S+ + + FG+
Sbjct: 8 KKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPSILFGV-- 65
Query: 88 GMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEI 147
G+ AL + Q GAG H + + + ++ + + ++ + + I++ + ++ +
Sbjct: 66 GLLMALVPVVAQLNGAGRQHKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAM 125
Query: 148 A-KLAGKF--TILTIPQ--LFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVF 202
A K G I +P LF SF L + V IGF+ L+L+I L ++F
Sbjct: 126 ATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV-----IGFIGLLLNIPLNWIF 180
Query: 203 IYA-FG---WGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAF-----TDIWA 253
+Y FG G G +A I WI+ + + Y++ K H + F ++
Sbjct: 181 VYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVT-SKRLAHVKVFETFHKPQPKELIR 239
Query: 254 FVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAI 313
RL A L E+ + +L L + ++A + + +N + V M + I AA+
Sbjct: 240 LFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVA--AHQVALNFSSLVFMFPMSIGAAV 297
Query: 314 SVRVSNELGMGRPRAAKYSVYVTVFQSXXXXXXXXXXXXXTKDYFAIIFTSSKELQRAAS 373
S+RV ++LG + A + V + ++ A+++T ++ + A
Sbjct: 298 SIRVGHKLGEQDTKGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAM 357
Query: 374 KIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGY-----RA 428
++ I +++VQ V +G G + + SY++ GLP GY+LG
Sbjct: 358 QLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGLPTGYILGMTNWLTEQ 417
Query: 429 KLGVTGLWSGMICG 442
LG G W G I G
Sbjct: 418 PLGAKGFWLGFIIG 431
>pdb|4HUK|A Chain A, Mate Transporter Norm-ng In Complex With Tpp And Monobody
pdb|4HUL|A Chain A, Mate Transporter Norm-ng In Complex With Cs+ And Monobody
pdb|4HUM|A Chain A, Mate Transporter Norm-ng In Complex With Ethidium And
Monobody
pdb|4HUN|A Chain A, Mate Transporter Norm-ng In Complex With R6g And Monobody
Length = 459
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 90/428 (21%), Positives = 169/428 (39%), Gaps = 18/428 (4%)
Query: 26 SVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGL 85
SV E + +A P++ + G + G G+ +L++ A+ S T +
Sbjct: 7 SVFLKEIRLLTALALPMLLAQVAQVGIGFVDTVMAGGAGKEDLAAVALGSSAFATV-YIT 65
Query: 86 LLGMGSALETLCGQAFGAGHVHMLG-VYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQD 144
+G+ +AL + Q +GAG G Q W L + ++ ++ P L
Sbjct: 66 FMGIMAALNPMIAQLYGAGKTGEAGETGRQGIWFGLILGIFGMILMWAAITPFRNWLTLS 125
Query: 145 DEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIY 204
D + ++ + T + + + + + ++ L+ F A +L++ L Y+F+Y
Sbjct: 126 DYVEGTMAQYMLFTSLAMPAAMVHRALHAYASSLNRPRLIMLVSFAAFVLNVPLNYIFVY 185
Query: 205 A-FGW---GTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLT-------WAAFTDIWA 253
FG G AG +A W ++A IY+ GLT WA F IW
Sbjct: 186 GKFGMPALGGAGCGVATMAVFWFSALALWIYIAKEKFFRPFGLTAKFGKPDWAVFKQIW- 244
Query: 254 FVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAI 313
++ + LE + I+ L +A + I +L+G + M+ + +A
Sbjct: 245 --KIGAPIGLSYFLEASAFSFIVFLIAPFGEDYVAAQQVGI--SLSGILYMIPQSVGSAG 300
Query: 314 SVRVSNELGMGRPRAAKYSVYVTVFQSXXXXXXXXXXXXXTKDYFAIIFTSSKELQRAAS 373
+VR+ LG A+Y V++ + A ++ + AS
Sbjct: 301 TVRIGFSLGRREFSRARYISGVSLVSGWVLAVITVLSLVLFRSPLASMYNDDPAVLSIAS 360
Query: 374 KIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVT 433
+ G+ + Q + S G + +I+ +++ GL GYLL YR +G+
Sbjct: 361 TVLLFAGLFQPADFTQCIASYALRGYKVTKVPMFIHAAAFWGCGLLPGYLLAYRFDMGIY 420
Query: 434 GLWSGMIC 441
G W+ +I
Sbjct: 421 GFWTALIA 428
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.436
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,736,406
Number of Sequences: 62578
Number of extensions: 471066
Number of successful extensions: 985
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 976
Number of HSP's gapped (non-prelim): 6
length of query: 482
length of database: 14,973,337
effective HSP length: 103
effective length of query: 379
effective length of database: 8,527,803
effective search space: 3232037337
effective search space used: 3232037337
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 53 (25.0 bits)