Query 035514
Match_columns 482
No_of_seqs 264 out of 2061
Neff 10.6
Searched_HMMs 46136
Date Fri Mar 29 03:36:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035514.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035514hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0534 NorM Na+-driven multid 100.0 4.9E-57 1.1E-61 441.5 55.4 435 28-466 12-452 (455)
2 PRK10189 MATE family multidrug 100.0 6.5E-53 1.4E-57 416.4 56.4 434 26-462 22-467 (478)
3 PRK00187 multidrug efflux prot 100.0 7.7E-52 1.7E-56 408.9 57.4 427 27-456 4-443 (464)
4 PRK01766 multidrug efflux prot 100.0 1.6E-49 3.5E-54 394.0 56.8 431 28-461 7-446 (456)
5 PRK10367 DNA-damage-inducible 100.0 3E-49 6.5E-54 386.8 55.1 422 29-461 5-434 (441)
6 PRK09575 vmrA multidrug efflux 100.0 2.1E-49 4.5E-54 391.1 53.6 427 28-460 7-438 (453)
7 TIGR01695 mviN integral membra 100.0 3.5E-37 7.7E-42 310.5 51.5 413 35-457 2-428 (502)
8 KOG1347 Uncharacterized membra 100.0 1.6E-38 3.5E-43 307.9 35.9 448 29-477 24-472 (473)
9 TIGR02900 spore_V_B stage V sp 100.0 1.7E-36 3.7E-41 304.5 49.4 412 36-456 2-433 (488)
10 TIGR00797 matE putative efflux 100.0 7.2E-36 1.6E-40 286.0 43.5 336 41-379 1-341 (342)
11 PRK15099 O-antigen translocase 100.0 2.7E-34 5.9E-39 281.7 46.6 402 35-455 3-410 (416)
12 PF03023 MVIN: MviN-like prote 100.0 2.1E-30 4.5E-35 254.2 49.8 386 63-457 5-403 (451)
13 COG0728 MviN Uncharacterized m 100.0 8.9E-29 1.9E-33 237.9 50.9 420 32-457 6-437 (518)
14 PRK10459 colanic acid exporter 100.0 1.5E-27 3.2E-32 239.5 47.7 398 32-456 4-404 (492)
15 COG2244 RfbX Membrane protein 100.0 9.7E-26 2.1E-30 225.9 42.3 390 30-439 3-394 (480)
16 PRK00187 multidrug efflux prot 99.9 3.1E-21 6.8E-26 191.0 27.7 207 26-233 229-442 (464)
17 COG0534 NorM Na+-driven multid 99.9 4.9E-21 1.1E-25 187.9 27.8 208 248-458 13-222 (455)
18 PRK10367 DNA-damage-inducible 99.9 6.1E-21 1.3E-25 187.3 28.4 206 249-456 6-211 (441)
19 PRK10189 MATE family multidrug 99.9 1.5E-20 3.2E-25 186.3 28.3 204 249-455 26-235 (478)
20 PRK01766 multidrug efflux prot 99.9 8.3E-20 1.8E-24 181.5 29.8 207 248-457 8-218 (456)
21 PRK09575 vmrA multidrug efflux 99.9 3.2E-20 7E-25 183.6 26.0 205 249-456 9-214 (453)
22 TIGR01695 mviN integral membra 99.8 1.1E-17 2.5E-22 168.7 32.9 206 28-235 218-428 (502)
23 PF01943 Polysacc_synt: Polysa 99.8 3.4E-16 7.4E-21 144.8 33.6 270 36-320 2-272 (273)
24 TIGR00797 matE putative efflux 99.8 1.2E-16 2.7E-21 152.9 26.2 194 260-456 1-196 (342)
25 PF03023 MVIN: MviN-like prote 99.8 6.7E-16 1.5E-20 151.9 31.5 209 27-237 192-405 (451)
26 COG0728 MviN Uncharacterized m 99.8 1.5E-14 3.3E-19 140.1 35.3 212 27-240 226-442 (518)
27 PF01554 MatE: MatE; InterPro 99.7 2.2E-18 4.9E-23 146.0 7.7 162 260-423 1-162 (162)
28 TIGR02900 spore_V_B stage V sp 99.7 3.7E-15 8.1E-20 149.9 29.4 204 27-235 219-434 (488)
29 PF01554 MatE: MatE; InterPro 99.7 4.2E-18 9.2E-23 144.3 5.4 160 41-201 1-162 (162)
30 PRK10459 colanic acid exporter 99.7 1.3E-13 2.8E-18 138.7 35.3 200 28-233 202-403 (492)
31 PRK15099 O-antigen translocase 99.7 6E-14 1.3E-18 137.9 26.7 201 26-233 208-410 (416)
32 PF13440 Polysacc_synt_3: Poly 99.6 2.6E-12 5.6E-17 117.2 31.7 247 51-320 2-251 (251)
33 COG2244 RfbX Membrane protein 99.6 2.1E-12 4.6E-17 129.6 26.9 187 28-220 208-396 (480)
34 PF04506 Rft-1: Rft protein; 99.3 2.1E-08 4.5E-13 99.7 32.0 417 37-456 5-469 (549)
35 KOG1347 Uncharacterized membra 99.3 7.6E-10 1.6E-14 108.4 21.4 205 248-456 24-229 (473)
36 KOG2864 Nuclear division RFT1 99.3 3.3E-07 7E-12 85.3 36.1 412 31-456 6-448 (530)
37 PF07260 ANKH: Progressive ank 99.0 2.3E-06 5E-11 76.4 29.1 316 29-352 7-343 (345)
38 PF04506 Rft-1: Rft protein; 98.5 2.4E-05 5.1E-10 78.3 21.4 206 32-238 252-473 (549)
39 PF14667 Polysacc_synt_C: Poly 98.5 3.7E-05 8E-10 63.5 18.6 81 155-237 2-82 (146)
40 PF14667 Polysacc_synt_C: Poly 98.2 1.4E-05 2.9E-10 66.1 9.6 79 376-457 2-80 (146)
41 PF07260 ANKH: Progressive ank 98.1 0.0017 3.7E-08 58.5 22.4 160 248-413 7-169 (345)
42 PF01943 Polysacc_synt: Polysa 98.1 0.0013 2.8E-08 60.5 21.5 186 256-456 3-190 (273)
43 KOG2864 Nuclear division RFT1 97.9 0.00086 1.9E-08 63.2 16.3 201 33-235 239-449 (530)
44 PF13440 Polysacc_synt_3: Poly 97.8 0.0076 1.6E-07 54.6 21.2 160 276-453 9-169 (251)
45 COG4267 Predicted membrane pro 97.5 0.088 1.9E-06 48.8 35.0 320 81-426 72-414 (467)
46 PF05975 EcsB: Bacterial ABC t 85.9 35 0.00077 33.1 16.8 39 325-363 89-127 (386)
47 COG4267 Predicted membrane pro 65.4 1.3E+02 0.0028 28.8 19.4 135 305-456 76-210 (467)
48 PF11457 DUF3021: Protein of u 65.2 69 0.0015 25.5 16.2 19 451-469 117-135 (136)
49 PF04505 Dispanin: Interferon- 63.6 49 0.0011 23.9 6.8 41 307-347 34-74 (82)
50 PF01102 Glycophorin_A: Glycop 36.8 52 0.0011 25.8 3.6 27 434-460 68-94 (122)
51 PF04995 CcmD: Heme exporter p 34.0 1.2E+02 0.0026 18.9 5.0 11 456-466 29-39 (46)
52 PF03904 DUF334: Domain of unk 32.1 1.7E+02 0.0038 25.6 6.2 39 105-143 142-180 (230)
53 KOG2234 Predicted UDP-galactos 30.4 4.8E+02 0.01 24.8 20.1 50 240-298 78-127 (345)
54 PTZ00370 STEVOR; Provisional 30.4 94 0.002 28.3 4.6 34 432-465 256-292 (296)
55 PF07672 MFS_Mycoplasma: Mycop 29.2 3.6E+02 0.0079 24.5 8.0 22 26-47 91-112 (267)
56 PRK09757 PTS system N-acetylga 26.0 5.1E+02 0.011 23.7 16.9 34 302-335 110-143 (267)
57 PRK09546 zntB zinc transporter 24.2 2.2E+02 0.0049 26.8 6.4 49 407-459 266-323 (324)
58 PF14184 YrvL: Regulatory prot 23.4 3.9E+02 0.0084 21.4 12.7 102 115-218 6-108 (132)
59 PF05313 Pox_P21: Poxvirus P21 22.9 4.5E+02 0.0097 22.2 6.8 25 209-233 135-159 (189)
60 TIGR00822 EII-Sor PTS system, 22.5 6E+02 0.013 23.2 18.6 35 300-334 107-141 (265)
61 TIGR01478 STEVOR variant surfa 22.0 1.3E+02 0.0028 27.4 3.8 28 214-241 264-291 (295)
62 TIGR01478 STEVOR variant surfa 21.8 1.1E+02 0.0023 28.0 3.3 31 432-462 260-293 (295)
63 TIGR03141 cytochro_ccmD heme e 21.4 2.2E+02 0.0047 17.7 5.7 10 436-445 9-18 (45)
64 KOG2532 Permease of the major 20.7 5.7E+02 0.012 25.7 8.6 83 373-456 134-218 (466)
65 PF04235 DUF418: Protein of un 20.2 4.9E+02 0.011 21.3 15.2 28 325-352 9-36 (163)
No 1
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=100.00 E-value=4.9e-57 Score=441.51 Aligned_cols=435 Identities=26% Similarity=0.416 Sum_probs=408.2
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVH 107 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 107 (482)
.++..|+++++++|++++++.+.+++++|+.++||+|++++++.+++.++...+ +.+..|++.+..+.+||++|+||++
T Consensus 12 ~~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~~alaav~la~~i~~~~-~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 12 FKKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGAEALAAVGLANPIFFLI-IAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHcCCchH
Confidence 556899999999999999999999999999999999999999999999999876 6699999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514 108 MLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL 186 (482)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (482)
++++..++++.+.++++++..++ +.+.+|++.+++.++|+.+.+.+|+++..++.|+..+..+..+++|+.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999777755 89999999999998889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-cC-CccchhHHHHHHHHHHHHHHHHHHHhhhc---ccccCCCCHHHHHHHHHHHHHHhHH
Q 035514 187 IGFVALILHIVLLYVFIYA-FG-WGTAGAAIAYDISSWIISIAQVIYVIGWC---KDGWHGLTWAAFTDIWAFVRLSLAS 261 (482)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~-~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~p~ 261 (482)
.++++.++|+++|++++++ ++ +|+.|+++||++++.+..++..+++.|+. .....+..+.+++.+||+++.|+|.
T Consensus 171 ~~~~~~~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~lG~p~ 250 (455)
T COG0534 171 ILLLGNLLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKKRLLSLFKKKLLKPDRKLLKEILRLGLPI 250 (455)
T ss_pred HHHHHHHHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhhccCCCHHHHHHHHHhcccH
Confidence 9999999999999999998 57 99999999999999999999999888443 2222233334457899999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 035514 262 AVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSL 341 (482)
Q Consensus 262 ~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 341 (482)
+++++.+...+...+.+++++|++ ++++|+++.++.++..+++.|++++.+|.+++++|+||++++++..+.+..++.
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvG~~~Ga~~~~~a~~~~~~~~~~~~ 328 (455)
T COG0534 251 FLESLSESLGFLLLTLFVARLGTV--ALAAYGIALRIASFIFMPPFGIAQAVTILVGQNLGAGNYKRARRAARLALKLSL 328 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHhcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999954 566999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHH
Q 035514 342 LIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLG 421 (482)
Q Consensus 342 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~ 421 (482)
.+++..++.+++++++++++|++|+++.+.+..++++.++..++++++.+..+++|+.||+|.++..++.+.|.+.+|+.
T Consensus 329 ~~~~~~~~i~~~f~~~i~~lF~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~g~lrg~g~~~~~~~~~~~~~~~~~lp~~ 408 (455)
T COG0534 329 LIALLIALLLLLFREPIISLFTTDPEVIALAVILLLIAALFQPFDGIQFVLSGVLRGAGDAKIPFIISLLSYWGFRLPLA 408 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHHHHHHH
Q 035514 422 YLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQA 466 (482)
Q Consensus 422 ~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (482)
+++.+.. +|..|+|+++.+++.++..+..+++++.+|+++..+.
T Consensus 409 ~~l~~~~-~g~~Gvw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 452 (455)
T COG0534 409 YLLGFFF-LGLAGVWIGFPLSLILRAILLLLRLRRGRWRRKAVAA 452 (455)
T ss_pred HHHhhhc-ccchHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhc
Confidence 9998876 8999999999999999999999999999898775544
No 2
>PRK10189 MATE family multidrug exporter; Provisional
Probab=100.00 E-value=6.5e-53 Score=416.44 Aligned_cols=434 Identities=16% Similarity=0.222 Sum_probs=396.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCC
Q 035514 26 SVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGH 105 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 105 (482)
.++-+..|++++.++|.++++++..+.+.+|+.+++++|++++++++++.++..+. ..+..|++++..+.++|++|++|
T Consensus 22 ~~~~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~~alAA~~i~~~i~~~~-~~~~~gl~~g~~~lvsq~~Ga~~ 100 (478)
T PRK10189 22 SYRVLFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGKEAMAGVGLADSFNMVI-MAFFAAIDLGTTVVVAFSLGKRD 100 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCC
Confidence 34556799999999999999999999999999999999999999999999998765 56888999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC--CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Q 035514 106 VHMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLG--QDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVS 182 (482)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (482)
+|++++..+.++.++++++++..++ +.+.++++.++. .|+|+.+.+..|+++..++.|+..+....++++|+.||++
T Consensus 101 ~~~~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~ 180 (478)
T PRK10189 101 RRRARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTK 180 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchH
Confidence 9999999999999999999888765 778899999884 6899999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhhhcc----cccCC-CCHHHHHHHHH
Q 035514 183 AFALIGFVALILHIVLLYVFIYAF----GWGTAGAAIAYDISSWIISIAQVIYVIGWCK----DGWHG-LTWAAFTDIWA 253 (482)
Q Consensus 183 ~~~~~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~----~~~~~-~~~~~~~~~~~ 253 (482)
.++..+++..++|++++++++++. ++|+.|+++|+.+++.+..++..+++.++.+ .++++ +.+.+++.+|+
T Consensus 181 ~~~~i~~~~~~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (478)
T PRK10189 181 IPLLINGGMNILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLMIGFNPALRISLKSYFKPLNFAIIWE 260 (478)
T ss_pred HhHHHHHHHHHHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHHhccCccceeeeccccccCCHHHHHH
Confidence 999999999999999999999863 6899999999999999988877665543211 11111 11124577999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 035514 254 FVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSV 333 (482)
Q Consensus 254 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 333 (482)
+++.|+|.++..........+.+.+++++|+. ++++|+++.++.++..++..|++++.+|.+++++|++|++++|+..
T Consensus 261 il~iG~P~~~~~~~~~~~~~~~~~~~~~~G~~--~~Aa~~I~~~i~~~~~~~~~gi~~A~~~lvg~~~Ga~~~~~a~~~~ 338 (478)
T PRK10189 261 VMGIGIPASIESVLFNGGKLLTQMFVAGMGTS--VIAGNFIAFSIAALINLPGNALGSASTIITGTRLGKGQIAQAERQL 338 (478)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 99999999999999988888888888998854 5669999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH
Q 035514 334 YVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSY 413 (482)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 413 (482)
+.+.++++.+++..+++++++++++.++|++|+++.+.+..++++.++..++++.+....+.+++.||++.++..++.+.
T Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~i~~lFt~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~g~lrg~G~t~~~~~i~~~~~ 418 (478)
T PRK10189 339 RHVFWLSTLGLTAIAWLSAPFAGLLASFYTQDPDVKHVVKILIWLNALFMPIWAASWVLPAGLKGARDARYAMWVSMLGM 418 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCCchHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHHH
Q 035514 414 YIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSRE 462 (482)
Q Consensus 414 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 462 (482)
|++.+|+.+++....++|+.|+|++..+++.+.+++.++++++.+|+++
T Consensus 419 ~~v~ip~~~ll~~~~~~g~~Gvw~~~~~~~~~~~~~~~~r~~~~~W~~~ 467 (478)
T PRK10189 419 WGCRVVAGYILGIMLGFGVVGVWMGMFLDWAVRGVLFYWRMVSGRWLWK 467 (478)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHcCccccC
Confidence 9999999999987777999999999999999999999999999999883
No 3
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=100.00 E-value=7.7e-52 Score=408.94 Aligned_cols=427 Identities=19% Similarity=0.281 Sum_probs=387.1
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
++++..|++++.++|.+++++...+.+.+|+.+++|+|++++++++++.++.+++ ..+..|++++..+.+||++|++|+
T Consensus 4 ~~~~~~k~il~~a~P~~~~~~~~~~~~~~d~~~v~~lg~~alAa~~i~~~i~~~~-~~~~~gl~~~~~~i~aq~~Ga~~~ 82 (464)
T PRK00187 4 PPTTELKAILRLAGPLIASQLAHMLMVFTDTLMMGRLGPEALAGGGLGAASYSFV-SIFCVGVIAAVGTLVAIRHGAGDI 82 (464)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCCh
Confidence 3566899999999999999999999999999999999999999999999998876 457899999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL 186 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (482)
+++++..+.++.+.++++++..++..+.+|++.+++.|+|+.+.+.+|+++..++.|+..+....++++|+.||++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~ev~~~~~~Yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 162 (464)
T PRK00187 83 EGATRLAQAGLWLAWLLALVAALLLWNLKPLLLLFGQAPQNVDAAMQFLHLLPFALPGYLSFMALRGFTSALGRAGPVMV 162 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999988888776655779999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhc----CCccchhHHHHHHHHHHHHHHHHHHHhhhcc---cc-cCCCCHHHHHHHHHHHHHH
Q 035514 187 IGFVALILHIVLLYVFIYAF----GWGTAGAAIAYDISSWIISIAQVIYVIGWCK---DG-WHGLTWAAFTDIWAFVRLS 258 (482)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~----~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~~~~~ 258 (482)
.++++.++|+++++++++++ ++|+.|+++|+.+++....+...++++++.+ .+ +++..+.+++..|++++.+
T Consensus 163 ~~~~~~~~ni~~~~~lIfg~~g~p~~Gv~Gaalat~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~lg 242 (464)
T PRK00187 163 ISLAGAVANLLLNYALIEGWFGLPKLGLMGIGLVTALVSNGMALALALYIRRHPAYAAYPLRKGLSRPSRAALRELWRLG 242 (464)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCccccccchHHHHHHHHHHHHHHHHHHHHhcchhhhhhhhccccCCCHHHHHHHHHhh
Confidence 99999999999999999863 4899999999999988887766666653211 11 1111223456799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 035514 259 LASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVF 338 (482)
Q Consensus 259 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
+|.++.++.+...+.+++.+++++|+. ++++++++.++..+..++..+++.+..+.+++++|++|++++++..+.++.
T Consensus 243 ~P~~~~~~~~~~~~~i~~~~i~~~G~~--alAa~~i~~~i~~l~~~~~~gi~~a~~~lvgq~~Ga~~~~~~~~~~~~~l~ 320 (464)
T PRK00187 243 LPIGGTYAVEVGLFTFAALCMGALGST--QLAAHQIALQIVSVAFMVPVGLSYAVTMRVGQHYGAGRLLEARRAGRVGIG 320 (464)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHcCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999964 566999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCC--cH---HHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH
Q 035514 339 QSLLIGLLFMIIILLTKDYFAIIFTS--SK---ELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSY 413 (482)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~l~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 413 (482)
+++.++++.++++.++++++.++|++ |+ |+.+.+..++++.+.+.++++++....+++++.||+|.+++.++++.
T Consensus 321 ~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G~~~~~~~~~~~~~ 400 (464)
T PRK00187 321 FGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLKDARTTFLIGLACY 400 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccCccHHHHHHHHHHH
Confidence 99999999999999999999999974 43 67888999999999999999999999999999999999999999999
Q ss_pred HHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 414 YIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 414 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
|++++|+.+++.+.+++|+.|+|+++.+++.+..+....+++.
T Consensus 401 ~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~~ 443 (464)
T PRK00187 401 WLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFEW 443 (464)
T ss_pred HHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999998888999999999999999988877666543
No 4
>PRK01766 multidrug efflux protein; Reviewed
Probab=100.00 E-value=1.6e-49 Score=394.00 Aligned_cols=431 Identities=23% Similarity=0.409 Sum_probs=393.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVH 107 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 107 (482)
.++..|++++.++|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++.+..+.+||++|++|++
T Consensus 7 ~~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~~laa~~~~~~~~~~~-~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 7 YKSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSATDLAAVAIGTSIWLPV-ILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhcCCChH
Confidence 456799999999999999999999999999999999999999999998887655 4578899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514 108 MLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL 186 (482)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (482)
+.++..+.++.++++.+++..++ +.+.+++..+++.|++..+.+..|+++.+++.++..+...+++++|+.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999888766 67778999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh----cCCccchhHHHHHHHHHHHHHHHHHHHhhhccc----ccCCCCHHHHHHHHHHHHHH
Q 035514 187 IGFVALILHIVLLYVFIYA----FGWGTAGAAIAYDISSWIISIAQVIYVIGWCKD----GWHGLTWAAFTDIWAFVRLS 258 (482)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 258 (482)
.++++.++|+++++++++. .++|+.|+++++.+++.+..++..++.+|+.+. .+.+..+.+++..|++++.+
T Consensus 166 ~~~i~~ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~il~l~ 245 (456)
T PRK01766 166 IGFLGLLINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRARRFRDFRLFKGLYKPDWAVIKRLLKLG 245 (456)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhChhhhHHHhhccccCCCHHHHHHHHHcc
Confidence 9999999999999999864 248999999999999999999888777632211 11222223456799999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 035514 259 LASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVF 338 (482)
Q Consensus 259 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
+|.+++...+...+.++..+++++|+. ++++++++.++.++...+..+++.+..+.+++++|++|++++++..+.+++
T Consensus 246 ~P~~~~~~~~~~~~~~~~~~~~~~G~~--~lAa~~i~~~i~~~~~~~~~gl~~a~~~~v~~~~Ga~~~~~~~~~~~~~~~ 323 (456)
T PRK01766 246 LPIGLAIFFEVSLFAVVTLLVSPLGTV--TVAAHQIALNFSSLLFMLPLSLAMALTIRVGFELGAGRTLDARQYAYIGLA 323 (456)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999864 456999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHH
Q 035514 339 QSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGL 418 (482)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 418 (482)
+++.++++.++++..+++++.++|++|+++.+.+..++++..+..++++++....+++++.||++.+++.++++.|++.+
T Consensus 324 ~~~~~~~~~~~~~~~~~~~i~~lf~~d~~v~~~~~~~l~~~~~~~~~~~~~~~~~~~l~g~g~~~~~~~~~~~~~~~~~i 403 (456)
T PRK01766 324 VGLGMALLTAIFLVLFREQIALLYTDDPEVVALASHLLLFAALFQFSDAIQVIGSGALRGYKDTRVIFFITFIAYWVLGL 403 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhccCccHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHH
Q 035514 419 PLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSR 461 (482)
Q Consensus 419 ~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 461 (482)
|..+++.+.+++|+.|+|+++.+++.+.+++.++++++.+|+.
T Consensus 404 ~~~~~l~~~~~~G~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (456)
T PRK01766 404 PLGYILALTDPMGPFGFWIGLIIGLTAAAILLLLRLRKLQRQP 446 (456)
T ss_pred HHHHHHHhccCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998888899999999999999999999888887766554
No 5
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=100.00 E-value=3e-49 Score=386.81 Aligned_cols=422 Identities=19% Similarity=0.214 Sum_probs=369.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcc
Q 035514 29 RTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVH 107 (482)
Q Consensus 29 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 107 (482)
.++.|+++++++|.++++++..+++.+|+.++||+ |++++++.+++.++.... ..+..|++.+..+.+||++|++|+|
T Consensus 5 ~~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g~~alAa~~l~~~i~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~~ 83 (441)
T PRK10367 5 TSSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDSPVYLGGVAVGATATSFL-FMLLLFLRMSTTGLTAQAFGAKNPQ 83 (441)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 45688999999999999999999999999999999 788999999999988876 5578899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514 108 MLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL 186 (482)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (482)
++++..++++.++++++++..++ ..+.++++.+++.|+|+.+.+.+|+++..++.|+..+..+..+++|+.||++.++.
T Consensus 84 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~ 163 (441)
T PRK10367 84 ALARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVI 163 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHH
Confidence 99999999999999998888765 77889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcccc-c--CCCCHHHHHHHHHHHHHHhHHHH
Q 035514 187 IGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDG-W--HGLTWAAFTDIWAFVRLSLASAV 263 (482)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~p~~~ 263 (482)
.++++.++|+++++++++++++|+.|+++|+.+++.+..++..+++.|+.+.+ . +.++.+.++..|++++.|.|.++
T Consensus 164 ~~ii~~~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 243 (441)
T PRK10367 164 LLVVGNILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRKVLKLRGISLEMLKTAWRGNFRRLLALNRDIML 243 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHhhhhhHHHHHHHHHhCchHHH
Confidence 99999999999999999988899999999999999999888777766422111 1 11111112468999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 035514 264 MLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLI 343 (482)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (482)
++..+...+.+.+.+++++|+. ++++|+++.++.++..++..|++++.+|.+++++|++|++++|+..+.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~~~~~~~G~~--alAa~~I~~~i~~~~~~~~~gl~~a~~~lvg~~~Ga~~~~~a~~~~~~~~~~~~~~ 321 (441)
T PRK10367 244 RSLLLQLCFGAITVLGARLGSD--IIAVNAVLMTLLTFTAYALDGFAYAVEAHSGQAYGARDGSQLLDVWRAACRQSGIV 321 (441)
T ss_pred HHHHHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999964 56799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCc---chhHHHHHHHHHHHhHHHH
Q 035514 344 GLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGW---QALVAYINIGSYYIFGLPL 420 (482)
Q Consensus 344 ~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~---~~~~~~~~~~~~~~~~i~~ 420 (482)
+...+++++.+++++.++|++|+|+.+.+..++++.++..+.........+++++.+| +|.++..++++.|+..++.
T Consensus 322 ~~~~~~~~~~~~~~i~~lFt~d~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~g~lrg~dt~~~~~~~~~~~~~~~~~~ 401 (441)
T PRK10367 322 ALLFSLVYALAGEHIIALLTSLPQIQQLADRYLIWQVILPLVGVWCYLLDGMFIGATRAAEMRNSMAVAAAGFALTLLTL 401 (441)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999988764433344455555666555 9999999999887533222
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHH
Q 035514 421 GYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSR 461 (482)
Q Consensus 421 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~ 461 (482)
+ ++|+.|+|++..+++.+++++...++++. ||+
T Consensus 402 -----~--~~g~~Gvw~a~~~~~~~~~i~~~~~~~~~-~~~ 434 (441)
T PRK10367 402 -----P--WLGNHGLWLALTVFLALRGLSLAAIWRRH-WRN 434 (441)
T ss_pred -----H--HcCchHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Confidence 2 37999999999999999999888776554 754
No 6
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=100.00 E-value=2.1e-49 Score=391.14 Aligned_cols=427 Identities=20% Similarity=0.262 Sum_probs=385.0
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
+++..|++++.++|.+++++...+++++|+.+++|+ |++++++++.+.++..+. ..+..+++.+..+.++|++|++|+
T Consensus 7 ~~~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~~~laa~~~~~~~~~~~-~~~~~~~~~g~~~lvsq~~Ga~~~ 85 (453)
T PRK09575 7 NQSIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGAEGLAGINMAWPVIGII-LGIGLMVGMGTGSLLSIKRGEGDL 85 (453)
T ss_pred cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHH-HHHHHHHhccHHHHHHHHhcCCCH
Confidence 345789999999999999999999999999999997 999999999999998865 457889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
|++++..+.++.++++++++..++ +.+.+|++.+++.|++..+.+..|+++..++.|+..+.....+.+|+.||++.++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~ 165 (453)
T PRK09575 86 EKAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLAT 165 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999999999999999999888765 7889999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh-hcccccC-CCCHHHHHHHHHHHHHHhHHHH
Q 035514 186 LIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIG-WCKDGWH-GLTWAAFTDIWAFVRLSLASAV 263 (482)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~ 263 (482)
..++.+.++|+++++++++.+++|+.|+++++.+++.+..++..+++++ +.+.++. +..+.+++..|++++.|+|.++
T Consensus 166 ~~~~~~~~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~ig~P~~~ 245 (453)
T PRK09575 166 GLMVIGALINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFSSRANIRLTLKELRFNWSLAPKIVLLGSSSFF 245 (453)
T ss_pred HHHHHHHHHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHCCCceeEEeeccCCcCHHHHHHHHHhChhHHH
Confidence 9999999999999999999888999999999999999999887777663 2222221 1112234678999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 035514 264 MLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLI 343 (482)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (482)
+.........+.+.+++++|+. .++++|+++.++..+..++..|++++..|.+++++|+||+|++++..+.++++++..
T Consensus 246 ~~~~~~~~~~~~~~~~~~~g~~-~~lAa~~i~~~i~~~~~~~~~gi~~a~~~lvg~~~Ga~~~~~~~~~~~~~l~l~~~~ 324 (453)
T PRK09575 246 MYLYGSFVVALHNRLFMEYGSA-LTVGAYAIVGYLMVLYYLVAEGIAEGMQPPVSYYFGARQYDNIKKLLKLAMKVTVLA 324 (453)
T ss_pred HHHHHHHHHHHHHHHHHHhCch-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCCChHHHHHHHHHHHHHHHHH
Confidence 9999999888888888888853 356799999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCC-cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHH
Q 035514 344 GLLFMIIILLTKDYFAIIFTS-SKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGY 422 (482)
Q Consensus 344 ~~~~~~~~~~~~~~i~~l~~~-~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~ 422 (482)
+++.++++..+++++.++|++ |+|+.+.+.+++++.+++.+++++.....+.+++.||++.++..++... ++++|..+
T Consensus 325 ~~~~~~~~~~~~~~i~~lf~~~~~~v~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~v~ip~~~ 403 (453)
T PRK09575 325 GIAWVLLLNLFPETMIALFNSGDSELIAETIVGIRLHLFAMFLDGFLVLASAYFMAVNQGGKALFISIGNM-LIQLPFLF 403 (453)
T ss_pred HHHHHHHHHHhHHHHHHhHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHhH-HHHHHHHH
Confidence 999999999999999999995 7889999999999999999999999999999999999999999997664 88999999
Q ss_pred HHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhChH
Q 035514 423 LLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNWS 460 (482)
Q Consensus 423 ~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~ 460 (482)
++... +|+.|+|+++.+++.+..++...++++ +|+
T Consensus 404 ll~~~--~G~~Gvw~a~~~~~~~~~~~~~~~~~~-~~~ 438 (453)
T PRK09575 404 ILPKW--LGVDGVWLAMPLSNIALSLVVAPMLWR-DVK 438 (453)
T ss_pred HHHHH--HCcchHhhHHHHHHHHHHHHHHHHHHH-HHH
Confidence 99765 799999999999999988877765544 444
No 7
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=100.00 E-value=3.5e-37 Score=310.47 Aligned_cols=413 Identities=16% Similarity=0.127 Sum_probs=345.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHH-HHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhCCCCcchHHH
Q 035514 35 MWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIEL-SSAAISLSVIGTFSFGLL-LGMGSALETLCGQAFGAGHVHMLGV 111 (482)
Q Consensus 35 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~-~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~ 111 (482)
+.|.+...+++++++.+++++|..+++|+ |++++ ++++.+.++.+.+..... .|++++..+...++.+++ |++++
T Consensus 2 ~~k~~~i~~~~~~~~~~~~~~~~~~~a~~lG~~~~~~~~~~~~~i~~~~~~~~~~~g~~~a~i~~~~~~~~~~--~~~~~ 79 (502)
T TIGR01695 2 LLKSTLIVSLGTLFSRITGFVRDAIIASAFGAGLTADAFNVAFVIPNFFRRLFAEGAFNSAFVPVFTKAKKKE--KEARR 79 (502)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhhh--hHHHH
Confidence 56888999999999999999999999995 99999 899999999875533233 578888777776664332 56776
Q ss_pred HHHHHHHHHHHHH-HHHHHH-HHhhHHHHHHc--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHH
Q 035514 112 YMQRSWLILWVTC-IFLLPI-YLFSAPILKLL--GQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALI 187 (482)
Q Consensus 112 ~~~~~~~~~~~~~-~~~~~~-~~~~~~i~~~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (482)
...+++....+.+ ++..++ +.+.+++..++ +.+++..+.+..|+++..++.++..+..+.++++|+.||++.+++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~g~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 159 (502)
T TIGR01695 80 AFANTVTTLLILSLLLVVLIGIFFAPFVISLLAPGFADETRSLAVSLTRIMFPYLLLISLAAVFGGILNARKRFFIPSFS 159 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeeHHHHHH
Confidence 6766665554444 344444 67778888877 4567777889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhH--HHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHH
Q 035514 188 GFVALILHIVLLYVFIYAFGWGTAGAA--IAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVML 265 (482)
Q Consensus 188 ~~~~~~~~i~l~~~li~~~~~g~~g~~--~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~ 265 (482)
+++.+++++...+++. .++|..|++ +++++++.+..++...+.+|+..+.+.+.+. +++..|++++++.|..+++
T Consensus 160 ~i~~~i~~i~~~~~~~--~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~~l~~~~p~~~~~ 236 (502)
T TIGR01695 160 PILFNIGVILSLLFFD--WNYGQYSLALAIGVLIGGVAQLLIQLPFLRKAGFLLKPRFNF-RDPGLKRFLKLFLPTTLGS 236 (502)
T ss_pred HHHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHHHHHHHHHHHCCCcccCcCCC-CChhHHHHHHHHHHHHHHH
Confidence 9998887766543333 468999988 9999999998888776665422111112221 3367899999999999999
Q ss_pred HHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 035514 266 CLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIM-LFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIG 344 (482)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (482)
........+|+.+.+.++.+ ++++|+.+.++.+++.. +..+++++..|.++++++++|.+++++..+++.++...++
T Consensus 237 ~~~~~~~~id~~~~~~~~~~--~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~ 314 (502)
T TIGR01695 237 SASQITLLINTALASFLEIG--SVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWNELRDLLNQGIRLSLLLT 314 (502)
T ss_pred HHHHHHHHHHHHHHhcCCcc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999887777754 46699999999998875 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhhhhhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHH
Q 035514 345 LLFMIIILLTKDYFAIIFTS----SKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPL 420 (482)
Q Consensus 345 ~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~ 420 (482)
++.++++.++++++.+++.+ |++..+.+..++++++++.++.++.....+.+++.||+|.+++.++... ++++++
T Consensus 315 ~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~i~i~l 393 (502)
T TIGR01695 315 IPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTRTPFINSVISV-VLNALL 393 (502)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCccCHHHHHHHH-HHHHHH
Confidence 99999999999999999976 5577888999999999999999999999999999999999999999987 889999
Q ss_pred HHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 035514 421 GYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRT 457 (482)
Q Consensus 421 ~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 457 (482)
++++.+. +|..|+|+++.+++.+...+..++.+|+
T Consensus 394 ~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 394 SLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred HHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9998765 8999999999999999988887777664
No 8
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=100.00 E-value=1.6e-38 Score=307.91 Aligned_cols=448 Identities=40% Similarity=0.683 Sum_probs=426.3
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcch
Q 035514 29 RTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHM 108 (482)
Q Consensus 29 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 108 (482)
..+.|++++++.|.++..+.+...+.+++.++||+|+.++++.+++.+..+.....+..|+..+..+.++|++|.++++.
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLaa~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~~~ 103 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELASVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKFTA 103 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHHHHHHHHHhhcccchHHhhccchhhhcchHhhhcccccch
Confidence 67889999999999999999999999999999999999999999999999987788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHH
Q 035514 109 LGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIG 188 (482)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 188 (482)
...+.+++.......+++...++.+.+|+...+++|+++...+..|.++..+..+.+........++|++++..+..+..
T Consensus 104 lg~~lqrs~~~l~~~~~~~~~l~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~~~~ 183 (473)
T KOG1347|consen 104 LGVYLQRSGIVLLVQGLPISLLILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLLVIG 183 (473)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh-hhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 035514 189 FVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVI-GWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCL 267 (482)
Q Consensus 189 ~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 267 (482)
....++++.+++++++..++|..|++++..+++.........+.. ......|..+..+ +++++++++.+.|.+++..+
T Consensus 184 ~~~~~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~~~~~~~w~~~s~~-~~~~~~~~~lai~s~~micl 262 (473)
T KOG1347|consen 184 LVALVLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVLSGCLAAWSGFSGE-FDSWGPFFALAIPSAVMICL 262 (473)
T ss_pred HHHHHHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHheecCchhhhhhhhHh-hhhHHHHHHHhhcchheeHH
Confidence 999999999999999999999999999999999999999888887 3356667777777 89999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 035514 268 EIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLF 347 (482)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (482)
+++.+.+..+..+.++....++++.+++.++....++++.+++.++..++++.+|++|++++|.....+...++..+...
T Consensus 263 E~w~~eil~l~~G~l~np~~~~~~~sI~~~~~~~~~~~~~~~~~a~strv~neLGag~p~~ar~~~~v~~~~~~~~g~~~ 342 (473)
T KOG1347|consen 263 EWWAYEILVLLAGLLGNAKVSLASQSICLEIGGWHLMIPGAFSAAVSTRVSNELGAGKPKRARVSAKVALQTSVAIGASL 342 (473)
T ss_pred HHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHcCCChhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998778888999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhc
Q 035514 348 MIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYR 427 (482)
Q Consensus 348 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 427 (482)
+..+..+++.+.++|++|+++.+...+..++++...++++.+.+..+..++.|+++...++++...+++++|....+.+.
T Consensus 343 ~~~~~~~r~~~~~ift~~~ev~~~va~~~pll~~~~~~~~~q~v~~Gva~g~g~q~~ga~vnl~~yyl~G~p~g~~l~~~ 422 (473)
T KOG1347|consen 343 GTTLLACREVLGQIFTNSKEVLDLVADLTPLLALSILLNALQAVLSGVARGSGWQQIGAVINLVAYYLVGAPVGLYLGFF 422 (473)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhccchhhhhheEEeeccccceEEEeeeeeeEecCcceeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHhhccCCCC
Q 035514 428 AKLGVTGLWSGMICGTALQTLLLLIVLYRTNWSREVEQATERMQKWGGQT 477 (482)
Q Consensus 428 ~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (482)
.++|..|.|.++..+..+..........+.+|++..++..++...++.+.
T Consensus 423 ~~~g~~glw~G~~~~~~~~~~~l~~~~~~tdW~~~~~~a~~~~~~~~~~~ 472 (473)
T KOG1347|consen 423 TKFGVKGLWIGILLGFSVQTLVLAIVTARTDWKNQAEKAFARIIASLVLV 472 (473)
T ss_pred EecCceEEEeehHHHHHHHHHHHHHheeeccHHHHHHHHHHHHHhhccCC
Confidence 89999999999999988888888888888999999999998887776554
No 9
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=100.00 E-value=1.7e-36 Score=304.55 Aligned_cols=412 Identities=15% Similarity=0.151 Sum_probs=345.9
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHH
Q 035514 36 WKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQ 114 (482)
Q Consensus 36 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 114 (482)
.|.+.|.+++++++.+.+++|+.+++|+ |++++|+++.+.++..+.......|++++..+.++|+.|++|+++.++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~i~~~~l~r~Lg~~~~G~~~~~~~~~~~~~~~~~~Gl~~a~~~~is~~~~~~~~~~~~~~~~ 81 (488)
T TIGR02900 2 LKGTFILTIANLITRILGFIFRIVLSRILGAEGVGLYGMAMPIYFLFITLTTGGLPVAISKFVAEASAKNDRKNIKKILK 81 (488)
T ss_pred hHhHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhhHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHhccchhhHHHHHH
Confidence 4678999999999999999999999997 999999999999988876554567999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 035514 115 RSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALI 193 (482)
Q Consensus 115 ~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (482)
.++.+.++.+++..++ +.+.+++...+.++++. ..++++..+..++..+....++.+|+.+|++..+..+++..+
T Consensus 82 ~~~~l~l~~~~~~~~l~~~~~~~i~~~~~~~~~~----~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~i 157 (488)
T TIGR02900 82 VSLIFTLIWSLIVTAIVFLLSPFIASTLLKDERS----LYSLLVICPAMPFIALSSVLKGYFQGISNMKPPAYIQVIEQI 157 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHHcCChhH----HHHHHHHHHHHHHHHHHHHHHHHHhhhccchHhHHHHHHHHH
Confidence 9999999988888765 66777776666665543 246788888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHh-----cCCccchhHHHHHHHHHHHHHHHHHHHhhhcc--cc--cCCCCHHHHHHHHHHHHHHhHHHHH
Q 035514 194 LHIVLLYVFIYA-----FGWGTAGAAIAYDISSWIISIAQVIYVIGWCK--DG--WHGLTWAAFTDIWAFVRLSLASAVM 264 (482)
Q Consensus 194 ~~i~l~~~li~~-----~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~~~~~~~~p~~~~ 264 (482)
+++.++..++.. .++++.|+++++.++..+..++..++++|+.+ .+ +.+..+.+++.+|+++++++|..++
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~v~g~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~l~~~~~p~~l~ 237 (488)
T TIGR02900 158 VRISVVALLISAFLPYGLEYAVAGAYLSLVLGELVSLLYLYFFFKRKKSFSIRFPFFDYKSEGKALLFDLFSVSLPLTLS 237 (488)
T ss_pred HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccCcchHHHHHHHHHHHHHHHHH
Confidence 998876666542 23567888899999998888877666553221 11 1111122346789999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCc-----hH---HHHhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 035514 265 LCLEIWYMTSIIILTGHLDN-----AI---IAVGSL-SICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYV 335 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~-----~~---~av~~~-~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
++.......+|+.++++... .. ..+|.| +++.++.+++..+..+++++..|.+++++|++|.++.++..++
T Consensus 238 ~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~~~~~~~l~~~~~p~~s~~~~~~~~~~~~~~~~~ 317 (488)
T TIGR02900 238 RFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFPAVITSSLSTALVPDISEAMAKKNYSSIEKRINQ 317 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999999888765321 01 123333 4566788888888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHH
Q 035514 336 TVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYI 415 (482)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~ 415 (482)
+.++...++.+.++++..+++++..++.++++ +.++++++++..++.++.....+.+++.||+|..++.++... +
T Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~~----~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i 392 (488)
T TIGR02900 318 AIKISLLLGLITTVILLVIPDELGALFYGRPD----AGNFIRVLAPSFPFLYFSAPLQSILQGLGKQKVALRNSLIGA-I 392 (488)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH-H
Confidence 99999999999999999999999999986543 567889999999999999999999999999999999999988 8
Q ss_pred hHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 416 FGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 416 ~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+++++++.+...+.+|+.|+|+++.+++.+..++..+..+|
T Consensus 393 ~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~ 433 (488)
T TIGR02900 393 VKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKK 433 (488)
T ss_pred HHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999998873345899999999999999999988887766
No 10
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=100.00 E-value=7.2e-36 Score=285.97 Aligned_cols=336 Identities=29% Similarity=0.506 Sum_probs=303.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHH
Q 035514 41 PVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLIL 120 (482)
Q Consensus 41 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 120 (482)
|.+++++...+.+.+|+.+++++|++++++++.+.++.... ..+..|++++..+.++++.|++|+|++++..+..+.+.
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~a~~i~~~~-~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 79 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPVDLAAVSLGSSVFMFL-FSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLLA 79 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHH-HHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHHH
Confidence 78899999999999999999999999999999999887766 55888999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHH
Q 035514 121 WVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLL 199 (482)
Q Consensus 121 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~ 199 (482)
.+.+++..++ +.+.+++..+++.|++..+.+..++++.+++.++..+..+..+.+|+.||++.+...++++.+++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~~~~i~~~ 159 (342)
T TIGR00797 80 LLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGNVINIILN 159 (342)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHh
Confidence 9999888866 788899999888788888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHH-hcC-CccchhHHHHHHHHHHHHHHHHHHHhhhccc--ccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 035514 200 YVFIY-AFG-WGTAGAAIAYDISSWIISIAQVIYVIGWCKD--GWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSI 275 (482)
Q Consensus 200 ~~li~-~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 275 (482)
++++. .++ +|+.|+++++.+++++..++..++.+|+.+. ++++..+.+++..|+++++++|..++++...+...++
T Consensus 160 ~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~P~~~~~l~~~~~~~~~ 239 (342)
T TIGR00797 160 YILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKKAKKIGLKWEGLLKPDWEVLKRLLKLGLPIAFRVILESLSFALL 239 (342)
T ss_pred HHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHhCchHHHHHHHHHHHHHHH
Confidence 99887 667 8899999999999999988887776642221 2212222234679999999999999999999999999
Q ss_pred HHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035514 276 IILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTK 355 (482)
Q Consensus 276 ~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (482)
+.+.+++|. .++++|+++.++.++...++.+++.+..|.++++++++|.++.++..++++++.+.++++.++++.+++
T Consensus 240 ~~i~~~~g~--~~v~~~~~a~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 317 (342)
T TIGR00797 240 ALLVARLGS--IALAAHQIALNVESLLFMPAFGFGIAVSILVGQALGAGDPKRAKEVARVALKLSLLLGLVLAIILILFR 317 (342)
T ss_pred HHHHHHcCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999885 356799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhcCCcHHHHHHHHHHHHHH
Q 035514 356 DYFAIIFTSSKELQRAASKIAFLL 379 (482)
Q Consensus 356 ~~i~~l~~~~~~~~~~~~~~l~i~ 379 (482)
+++.++|++|+++.+.+..++++.
T Consensus 318 ~~i~~~~~~~~~~~~~~~~~~~~~ 341 (342)
T TIGR00797 318 EFIARLFTNDPEVLELAAIYLIFV 341 (342)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHh
Confidence 999999999999999888887764
No 11
>PRK15099 O-antigen translocase; Provisional
Probab=100.00 E-value=2.7e-34 Score=281.66 Aligned_cols=402 Identities=13% Similarity=0.041 Sum_probs=336.8
Q ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHH
Q 035514 35 MWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYM 113 (482)
Q Consensus 35 ~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~ 113 (482)
+.|.+.+...+.++..+.+++...+++|+ |++++|.++...++...+......|++++..+.++|+ ++|+++.++.+
T Consensus 3 ~~k~~~~~~~~~~~~~~~~~l~~~i~ar~Lg~~~~G~~~~~~~~i~~~~~~~~~G~~~a~~~~ia~~--~~~~~~~~~~~ 80 (416)
T PRK15099 3 LAKASLWTAASTLVKIGAGLLVVKLLAVSFGPAGVGQAGNFRQLITVLGVLAGAGIFNGVTKYVAQY--HDQPQQLRAVV 80 (416)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHcCCccceeeeeHHhc--CCCHHHHHHHH
Confidence 56888899999999999999999999998 9999999999999888776655888888888999987 57888899999
Q ss_pred HHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH
Q 035514 114 QRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVAL 192 (482)
Q Consensus 114 ~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 192 (482)
++++...++.+++..++ +.+.+|+...+..+++. . .+..+..+..++..+.....+.+|+.||++.++..++++.
T Consensus 81 ~~~~~l~~~~~~i~~~~~~~~~~~i~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~~~~~~~~~~~ 156 (416)
T PRK15099 81 GTSSAMVLGFSTLLALVFLLAAAPISQGLFGHTDY-Q---GVVRAVALIQMGIAWANLLLAILKGFRDAAGNALSLIVGS 156 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888765 78889998877766652 2 3455666666677888899999999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc--CCCCHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 035514 193 ILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGW--HGLTWAAFTDIWAFVRLSLASAVMLCLEIW 270 (482)
Q Consensus 193 ~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 270 (482)
++|+.+ +++.... .|+.|+++++++++.+..+...++++|+.+.+. .+.+. +++..|+++++|.|..+++....+
T Consensus 157 ~~~i~l-~i~~~~~-~Gv~Ga~iat~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~k~ll~~g~p~~~~~~~~~i 233 (416)
T PRK15099 157 LIGVAA-YYLCYRL-GGYEGALLGLALVPALVVLPAGIMLIRRGTIPLSYLKPSW-DNGLAGQLGKFTLMALITSVTLPV 233 (416)
T ss_pred HHHHHH-HHHHHHH-hcchHHHHHHHHHHHHHHHHHHHHHHHccceehHhhhccC-CHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999887 4444432 499999999999999988777666653322111 11222 346689999999999999999999
Q ss_pred HHHHHHHHHh-cCCchHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 035514 271 YMTSIIILTG-HLDNAIIAVGSLSICMNLNGW-VIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFM 348 (482)
Q Consensus 271 ~~~~~~~~~~-~~~~~~~av~~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (482)
....++.+++ ++|+ .++|.|+++.|+.+. ...+..+++++..|.++++ +|.++.++..++..+....++++.+
T Consensus 234 ~~~~~~~~l~~~~g~--~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (416)
T PRK15099 234 AYVMMRNLLAAHYSW--DEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---TEKRDITREIVKALKFVLPAVAAAS 308 (416)
T ss_pred HHHHHHHHHHhcCCH--HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999988885 7774 478899999999874 5789999999999999985 6789999999999999999999999
Q ss_pred HHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhcc
Q 035514 349 IIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRA 428 (482)
Q Consensus 349 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 428 (482)
+++.++++++++++.+|+ ++.+.+++++++++.++...+........+.++++.....++... .+++++++++.+.
T Consensus 309 ~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~l~i~l~~~li~~- 384 (416)
T PRK15099 309 FTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRFYILAEVSQF-TLLTGFAHWLIPL- 384 (416)
T ss_pred HHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH-
Confidence 999999999999999865 566788999999999998888887777778888887777776655 8999999999877
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHH
Q 035514 429 KLGVTGLWSGMICGTALQTLLLLIVLY 455 (482)
Q Consensus 429 ~~g~~g~~~a~~~~~~~~~~~~~~~~~ 455 (482)
+|..|+++++.+++++...+......
T Consensus 385 -~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 385 -HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred -hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999887775554
No 12
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=100.00 E-value=2.1e-30 Score=254.24 Aligned_cols=386 Identities=18% Similarity=0.203 Sum_probs=333.8
Q ss_pred cChH-HHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHH
Q 035514 63 IGEI-ELSSAAISLSVIGTFSFGLL-LGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILK 139 (482)
Q Consensus 63 ~g~~-~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~ 139 (482)
+|+. +..++..+.++.+.+...+. .++.++..|..++.. ++++|+.++..+.......++.++++++ +++++++..
T Consensus 5 fG~s~~~Daf~~A~~ip~~l~~l~~~gal~~~~IP~~~~~~-~~~~~~~~~f~~~~~~~~~~~~~~l~~l~~lfa~~iv~ 83 (451)
T PF03023_consen 5 FGASAEADAFFVAFTIPNFLRSLLAGGALSAAFIPVFSKAR-EKGEEEARRFISTLLTILLIISLLLTLLGILFAPPIVR 83 (451)
T ss_pred hcCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4554 56789999999997744343 568999999999998 7889999999998888777777777765 888899988
Q ss_pred Hc--CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc---cchhH
Q 035514 140 LL--GQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWG---TAGAA 214 (482)
Q Consensus 140 ~~--~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g---~~g~~ 214 (482)
.+ +.|++..+.+..++++..+..++..+..+..+++|+++|...+....++.++..++..+++... .| +.+.+
T Consensus 84 ~la~g~~~~~~~la~~l~~i~~~~~~~~~l~~i~~a~L~~~~~F~~~~~~~l~~N~~~I~~~~~~~~~--~~~~~i~~la 161 (451)
T PF03023_consen 84 LLAPGFSPETIELAVQLLRILAPSILFIGLSSIFSAILNAHRRFLIPALSPLLFNLSIILSLLLLSNS--WGQENIYALA 161 (451)
T ss_pred HHCCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHh--cCchHHHHHH
Confidence 77 4578889999999999999999999999999999999999999999998887766654444333 56 88899
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHH
Q 035514 215 IAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSI 294 (482)
Q Consensus 215 ~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~ 294 (482)
++.+++..+..++.....+|...+...++++++ ++.|++++...|..+.....++...+++.+.+.++++. +++++.
T Consensus 162 ~g~~~g~~~~~l~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~--vs~l~Y 238 (451)
T PF03023_consen 162 WGVLIGAIIQFLIQLPYLRRFGFRFRPKFDWRD-PNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGS--VSALNY 238 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCcccccCCCCC-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccH--HHHHHH
Confidence 999999999988887777643222222233322 56899999999999999999999999999999999775 459999
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCC----cHHHH
Q 035514 295 CMNLNGWVI-MLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTS----SKELQ 369 (482)
Q Consensus 295 ~~~i~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~----~~~~~ 369 (482)
+.++.+++. .+..+++++..|.+++...++|.++.++..++.++....+.+|.++++..+++++++++.+ |++..
T Consensus 239 A~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~ 318 (451)
T PF03023_consen 239 AQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDWEEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDT 318 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHH
Confidence 999999988 5567999999999999999999999999999999999999999999999999999999973 56668
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHH
Q 035514 370 RAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLL 449 (482)
Q Consensus 370 ~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~ 449 (482)
+....++.+++++.++.++...+...+++.||+|.+++.++++. ++++.+++.+.+. +|..|+++++.++..+..++
T Consensus 319 ~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~~~~~~~~~~~~-~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~ 395 (451)
T PF03023_consen 319 QLTASALRIYALGLPFYALNDLLSRVFYALGDTKTPVRISVISV-VLNIILSILLVPF--FGVAGLALATSLSAIISALL 395 (451)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCcHhHHHHHHHHH-HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999998 9999999888766 99999999999999999998
Q ss_pred HHHHHHHh
Q 035514 450 LLIVLYRT 457 (482)
Q Consensus 450 ~~~~~~~~ 457 (482)
.+...+|+
T Consensus 396 l~~~l~r~ 403 (451)
T PF03023_consen 396 LYILLRRR 403 (451)
T ss_pred HHHHHHHH
Confidence 88887775
No 13
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=100.00 E-value=8.9e-29 Score=237.86 Aligned_cols=420 Identities=14% Similarity=0.052 Sum_probs=348.6
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-Ch-HHHHHHHHHHHHHHHHHH-HHHHHHHHhHHHHHHhhhCCCCcch
Q 035514 32 TVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GE-IELSSAAISLSVIGTFSF-GLLLGMGSALETLCGQAFGAGHVHM 108 (482)
Q Consensus 32 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~-~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~s~~~g~~~~~~ 108 (482)
..+++|-++-.....+++.+.+++...+++.+ |+ ....++.++.++.+++-- .....++++..|...++..++++|+
T Consensus 6 ~~sllks~~~vs~~Tl~SRi~G~vRd~~iA~~fGa~~~aDAF~vAf~iPN~lRrlfaegafs~aFVPv~~~~~~~~~~~~ 85 (518)
T COG0728 6 KMSLLKSLIIVSSATLLSRILGFVRDVLIAAAFGAGAAADAFFVAFKLPNLLRRLFAEGAFSSAFVPVLAEAKKKEGEEA 85 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHhHHHHHHHHhchhHhhhhhHHHHHHHHcchhhH
Confidence 34566777778888899999999988888886 88 467799999999996633 3344568999999999988777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHc-CC--CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhH
Q 035514 109 LGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLL-GQ--DDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAF 184 (482)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~-~~--~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~ 184 (482)
.++..+........+.+..+++ ..+.+.+.+.. +. |++....+....++..+..++..+.....+++++.+|...+
T Consensus 86 ~~~f~~~v~~~l~~~ll~vt~L~~l~~p~iv~~~~~~g~~~~~~~~a~~l~~i~~Pyl~~isL~al~~aiLNs~~~F~~~ 165 (518)
T COG0728 86 ARFFSRLVTGLLTLVLLLVTLLGILFAPWLVRLLLAPGFDETDKFLAVLLTRILFPYLLFISLSALFGAILNSRNRFFIP 165 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCeechh
Confidence 7776666664555555555555 66777777444 33 23333368888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHH
Q 035514 185 ALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVM 264 (482)
Q Consensus 185 ~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~ 264 (482)
.+..+..++.-+.....+.........+.+++..++.+.+.++.+..++|......+++.+++ +..|++.+.-.|..++
T Consensus 166 a~aPvl~Nv~~I~~~l~~~~~~~~~~~~La~gvl~Gg~~Q~l~~lp~l~~~g~~~~p~~~~~~-~~lk~~~~~~~p~~l~ 244 (518)
T COG0728 166 AFAPVLLNVSVIGLALFLGPYFDPPLLALAWGVLIGGLLQLLVQLPALRKAGLLIKPRFGFKD-PGLKRFLKLMLPALLG 244 (518)
T ss_pred hhhHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCCCCCCc-hhHHHHHHHHHHHHHH
Confidence 999998888777555554444322367889999999999999999888853322223333332 6689999999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 035514 265 LCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVI-MLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLI 343 (482)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 343 (482)
....++...+|+.+.+.+.++..+ .++.+.++.+++. .+..+++++..|.+|++..++|.++.++..+++++++..+
T Consensus 245 ~sisQi~lli~~~iAS~l~~Gsis--~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~~~~~~~l~~~i~l~lll 322 (518)
T COG0728 245 VSISQINLLIDTAIASFLAEGSVS--WLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDWPEFLKLLDWGLRLTLLL 322 (518)
T ss_pred HHHHHHHHHHHHHHHHhhccccHH--HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHH
Confidence 999999999999999999766544 9999999999999 6789999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhhhhhhcCC----cHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHH
Q 035514 344 GLLFMIIILLTKDYFAIIFTS----SKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLP 419 (482)
Q Consensus 344 ~~~~~~~~~~~~~~i~~l~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 419 (482)
++|.++++.++++|+++++.+ ++++.....+.+..++++.++.....++...+++.+|+|.|+++.+++. ++++.
T Consensus 323 ~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ktP~~i~ii~~-~~n~~ 401 (518)
T COG0728 323 TLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDTKTPMKIAIISL-VVNIL 401 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCcChHHHHHHH-HHHHH
Confidence 999999999999999999964 4566778889999999999999999999999999999999999999999 99999
Q ss_pred HHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 035514 420 LGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRT 457 (482)
Q Consensus 420 ~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 457 (482)
+++.+... +|..|.+.+..++.++.+.+.++..+|+
T Consensus 402 l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~ 437 (518)
T COG0728 402 LNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKR 437 (518)
T ss_pred HHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99777666 8999999999999888888887777765
No 14
>PRK10459 colanic acid exporter; Provisional
Probab=99.98 E-value=1.5e-27 Score=239.52 Aligned_cols=398 Identities=14% Similarity=0.139 Sum_probs=318.9
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHH
Q 035514 32 TVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLG 110 (482)
Q Consensus 32 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~ 110 (482)
.++..+.+.+..++++.....+++...+++|+ ||+++|.++.+..+.++.......|++++.. |. +|.+ +
T Consensus 4 ~~~~~~g~~w~~~~~~~~~~~~~i~~~ilaR~L~p~~~G~~~~~~~~~~~~~~~~~~Gl~~aii----~~---~~~~--~ 74 (492)
T PRK10459 4 REKTISGAKWTAISTVIIIGLQLVQLTVLARILDNHQFGLLTMSLVIIGFADTLSDMGIGASII----QR---QDIS--H 74 (492)
T ss_pred HHHHHccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHccHHHHHHHHHHHHHHHHHcCHHHHHH----hc---ccCC--H
Confidence 36677889999999999999999999999997 9999999999999999877667778887642 21 1211 2
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHH
Q 035514 111 VYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGF 189 (482)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 189 (482)
+..++.+....+.++++.++ +.+.+++..++++ ++. ...+++..+..++..+.....+.+++.+|.+......+
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~l~r~~~f~~~a~~~~ 149 (492)
T PRK10459 75 LQLSTLYWLNVGLGIVVFVLVFLLSPLIADFYHN-PEL----APLIKTLSLAFVIIPIGQQFRALLQKELEFNKLAKIEI 149 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-hhh----HHHHHHHHHHHHHHHHhhHHHHHHHHHhhhHHHHHHHH
Confidence 33455556666666666555 4555555555544 332 24567777778888888889999999999999999998
Q ss_pred HHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHH
Q 035514 190 VALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEI 269 (482)
Q Consensus 190 ~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 269 (482)
...+...++.+.+... ++|+.+.+++..++..+..+......+|+.+. +.+. +++..|++++++.|...+++...
T Consensus 150 ~~~i~~~~~~i~~~~~-~~g~~~l~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~-~~~~~k~ll~~~~~~~~~~~~~~ 224 (492)
T PRK10459 150 SAVVAGFTFAVVSAFF-WPGALAAILGYLVNSSVRTLLFGYFGRKIYRP---ALHF-SLASVKPNLSFGAWQTAERIINY 224 (492)
T ss_pred HHHHHHHHHHHHHHHH-CCcHHHHHHHHHHHHHHHHHHHHHHhcccCCc---ccee-cHHHHHHHHhhhHHHHHHHHHHH
Confidence 8888877777666553 78999999999999888766554333332221 1111 23568999999999999999999
Q ss_pred HHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHH
Q 035514 270 WYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIM-LFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFM 348 (482)
Q Consensus 270 ~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (482)
+....|+++++++.+ +.++|.|+.+.++.+.+.. +...++++..|..++. ++|.++.++.+++..+....+++|.+
T Consensus 225 ~~~~~d~~~lg~~lg-~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~~~~~~~~~~~~~~~~~~~~p~~ 301 (492)
T PRK10459 225 LNTNIDTILIGRILG-AEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDTEKLRVGFLKLLSVLGIINFPLL 301 (492)
T ss_pred HHhcCchhhhhHhhc-hHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999887755 4468899999999988665 4455788999999985 57889999999999999999999999
Q ss_pred HHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhcc
Q 035514 349 IIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRA 428 (482)
Q Consensus 349 ~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 428 (482)
+++.+++++++.++.+++ +..+...+++++++.++..........+++.||+|..+..+++.. ++.+|..+.+...
T Consensus 302 ~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~~~~~~~~-~~~i~~~~~~~~~- 377 (492)
T PRK10459 302 LGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSFKWNVFKT-FLFIPAIVIGGQL- 377 (492)
T ss_pred HHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhHHHHHHHH-HHHHHHHHHHHhh-
Confidence 999999999999998765 677889999999999999999999999999999999999998887 8888887777655
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 429 KLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 429 ~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+|+.|+++++.+++.+...+..+..+|
T Consensus 378 -~G~~g~a~a~~i~~~~~~~~~~~~~~~ 404 (492)
T PRK10459 378 -AGLIGVALGFLLVQIINTILSYFLMIK 404 (492)
T ss_pred -ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999988877776634
No 15
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.96 E-value=9.7e-26 Score=225.86 Aligned_cols=390 Identities=18% Similarity=0.173 Sum_probs=308.0
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcch
Q 035514 30 TETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHM 108 (482)
Q Consensus 30 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~ 108 (482)
+..+++.|.+.....+++.+.+.+++....++|+ |++++|.++.+.++.+++......|+..+..+.++++.+++++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~lar~lg~~~~G~~~~~~~~~~~~~~i~~~G~~~ai~r~ia~~~~~~~~~~ 82 (480)
T COG2244 3 SLKKKLIKGALWLLLGTLISALLGLITIPLLARLLGPEGFGLYALALAIIGLFSILADFGLPAAITREIAEYREKGEYLL 82 (480)
T ss_pred hHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHhCcccceeeehHHHHHHHHHHHHHcCCcHHHHHHHHHhhcccHHHH
Confidence 3567888999999999999999999999999997 999999999999999988777779999999999999876555555
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHH
Q 035514 109 LGVY-MQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALI 187 (482)
Q Consensus 109 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 187 (482)
.... ...........+.+.........+. ++ .....+++..+..++........+.+|+.++++.....
T Consensus 83 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~------~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (480)
T COG2244 83 LILLSVLLLLLLALILLLLLLLIAYLLAPI------DP----VLALLLRILSLALLLLPLSSVLRGLFQGFGRFGPLALS 152 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc------Ch----hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhH
Confidence 4444 4444444444444443332222222 12 22334677888999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHH
Q 035514 188 GFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCL 267 (482)
Q Consensus 188 ~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 267 (482)
.+.. ..-....+.+.. .......++...+..........+.+++.+...+......++..|+.+++++|....++.
T Consensus 153 ~~~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~ 228 (480)
T COG2244 153 IVSS-IFLLAAVFALLF---AALGLAVWALVLGAVVSLLVLLILLGKKKRGLKRPILRFSLALLKELLRFGLPLLLSSLL 228 (480)
T ss_pred HHHH-HHHHHHHHHHHH---HhhhHHHHHHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHhhHHHHHHHH
Confidence 4444 111222222221 234455566666666655555544432112111111111357799999999999999999
Q ss_pred HHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 035514 268 EIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLF 347 (482)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (482)
..+....|+++++++-+ +..+|.|+.+.++......+..+++.+..|.+++...++|.++.++..+++.++...++.|.
T Consensus 229 ~~l~~~~D~~~i~~~l~-~~~vG~Y~~a~~i~~~~~~~~~~l~~~l~P~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~p~ 307 (480)
T COG2244 229 NFLFTNIDTLLLGLFLG-PAQVGIYSAAQRLVSLLLIVASALNRVLFPALSRAYAEGDRKALKKLLRQSLKLLLLISIPA 307 (480)
T ss_pred HHHHHHHHHHHHHHHhh-hhHheecccccHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999987765 45678999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhc
Q 035514 348 MIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYR 427 (482)
Q Consensus 348 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~ 427 (482)
.+++..+++++..++.+++ +..+...+.++++..++.+........+++.|+++..++.+.++. +.++.+++.+.+.
T Consensus 308 ~~~l~~~~~~~i~~~fg~~--~~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~-i~~~~l~~~li~~ 384 (480)
T COG2244 308 LLGLLLLAPPIITLLFGEK--YASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLLLISLISA-LLNLILNLLLIPR 384 (480)
T ss_pred HHHHHHHHhhhheeecCCc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhHHHHHHHH-HHHHHHHhHHHHh
Confidence 9999999999999998865 444788899999999999999999999999999999999999998 9999999999776
Q ss_pred cCCCcchhhHHH
Q 035514 428 AKLGVTGLWSGM 439 (482)
Q Consensus 428 ~~~g~~g~~~a~ 439 (482)
+|..|+..++
T Consensus 385 --~g~~g~~~a~ 394 (480)
T COG2244 385 --FGLIGAAIAT 394 (480)
T ss_pred --hhhhhHHHHH
Confidence 8999999888
No 16
>PRK00187 multidrug efflux protein NorA; Provisional
Probab=99.90 E-value=3.1e-21 Score=191.05 Aligned_cols=207 Identities=17% Similarity=0.275 Sum_probs=190.0
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCC
Q 035514 26 SVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGH 105 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 105 (482)
+.+++..|++++.++|.+++++.+.....+|..+++++|++++++++++.++..+. ..+..|++++.++.++|++|++|
T Consensus 229 ~~~~~~~k~il~lg~P~~~~~~~~~~~~~i~~~~i~~~G~~alAa~~i~~~i~~l~-~~~~~gi~~a~~~lvgq~~Ga~~ 307 (464)
T PRK00187 229 RPSRAALRELWRLGLPIGGTYAVEVGLFTFAALCMGALGSTQLAAHQIALQIVSVA-FMVPVGLSYAVTMRVGQHYGAGR 307 (464)
T ss_pred CCCHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCC
Confidence 45677899999999999999999999999999999999999999999999998865 56899999999999999999999
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC--CH---HHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcC
Q 035514 106 VHMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQ--DD---EIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQS 179 (482)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~--~~---~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~ 179 (482)
+|++++..+.++.++.+.+++..++ +.+.+++.+.+.+ ++ |+.+.+..|+++.+++.++..+..+..+.+||.|
T Consensus 308 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~f~~~i~~~ft~~~~~~~~~v~~~~~~~l~i~~~~~~~~~~~~v~~~~lrg~G 387 (464)
T PRK00187 308 LLEARRAGRVGIGFGAVVMLLFAGLFWLLPEAIIGLFLDRNDPAFAEIVQLAVSLLAVAAWFELFDGTQTIAMGAIRGLK 387 (464)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhHhccC
Confidence 9999999999999999999888765 7788999988853 33 7888999999999999999999999999999999
Q ss_pred CchhHHHHHHHHH-HHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 035514 180 KVSAFALIGFVAL-ILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVI 233 (482)
Q Consensus 180 ~~~~~~~~~~~~~-~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 233 (482)
|++.++..+++.. ++++++++++.+.+++|+.|+++++.+++.+..++....++
T Consensus 388 ~~~~~~~~~~~~~~~~~ipl~~ll~~~~~~g~~Gvw~~~~i~~~~~~~~~~~~~~ 442 (464)
T PRK00187 388 DARTTFLIGLACYWLVGAPLAWLLAFTLGWGAVGVWWGLALGLACAAVALTLAFE 442 (464)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhccCCCceeeHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 99999999999888899999999999999998877766554
No 17
>COG0534 NorM Na+-driven multidrug efflux pump [Defense mechanisms]
Probab=99.89 E-value=4.9e-21 Score=187.92 Aligned_cols=208 Identities=23% Similarity=0.329 Sum_probs=197.8
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 035514 248 FTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPR 327 (482)
Q Consensus 248 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 327 (482)
.+..|+++++++|..+.++.......+|+.+++++++ .++++-++++++..+...+..+++.+..+.++|++|+||++
T Consensus 13 ~~~~k~l~~la~P~i~~~l~~~l~~~vD~~~vG~~~~--~alaav~la~~i~~~~~~~~~gl~~g~~~liaq~~Ga~~~~ 90 (455)
T COG0534 13 KKILKLLLKLAIPIILGNLLQTLYGLVDTFMVGHLGA--EALAAVGLANPIFFLIIAIFIGLGTGTTVLVAQAIGAGDRK 90 (455)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccH--HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCchH
Confidence 3578999999999999999999999999999999994 45669999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHH
Q 035514 328 AAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAY 407 (482)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 407 (482)
++++..++++....+++++..++...+++++.+++.+++++.+.+.+|+++..++.++..++....+++++.||+|.+++
T Consensus 91 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~m~ 170 (455)
T COG0534 91 KAKRVLGQGLLLALLLGLLLAILLLFFAEPLLRLLGAPAEVLELAAEYLRIILLGAPFALLSFVLSGILRGLGDTKTPMY 170 (455)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Confidence 99999999999999999999999999999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhc-cC-CCcchhhHHHHHHHHHHHHHHHHHHHHhC
Q 035514 408 INIGSYYIFGLPLGYLLGYR-AK-LGVTGLWSGMICGTALQTLLLLIVLYRTN 458 (482)
Q Consensus 408 ~~~~~~~~~~i~~~~~l~~~-~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~~ 458 (482)
.++++. ++|+.+++++.+. .+ +|+.|+++|+.+++.+..++...++.+++
T Consensus 171 ~~~~~~-~lNivln~llI~g~~g~lGv~GAA~AT~ia~~~~~~~~~~~~~~~~ 222 (455)
T COG0534 171 ILLLGN-LLNIVLNYLLIFGLFGGLGVAGAALATVIARWIGALLLLIYLLRKK 222 (455)
T ss_pred HHHHHH-HHHHHhhHHHHHhccccccchhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999 9999999999987 46 99999999999999999998888877755
No 18
>PRK10367 DNA-damage-inducible SOS response protein; Provisional
Probab=99.89 E-value=6.1e-21 Score=187.26 Aligned_cols=206 Identities=16% Similarity=0.159 Sum_probs=191.4
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 035514 249 TDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRA 328 (482)
Q Consensus 249 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 328 (482)
++.|++++.++|..++++.......+|+.+++++++ +.++++.+++.++.++...+..+++.+..+.+++++|+||+++
T Consensus 6 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~l~g-~~alAa~~l~~~i~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~~ 84 (441)
T PRK10367 6 SSDKALWRLALPMIFSNITVPLLGLVDTAVIGHLDS-PVYLGGVAVGATATSFLFMLLLFLRMSTTGLTAQAFGAKNPQA 84 (441)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 558899999999999999999999999999999854 4456799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHH
Q 035514 329 AKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYI 408 (482)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~ 408 (482)
+++..++++..+.+.+++..++...+.+++.++++.|+|+.+.+.+|+++..++.++........+.+++.||+|.+++.
T Consensus 85 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ll~~~g~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~~~ 164 (441)
T PRK10367 85 LARALVQPLLLALGAGALIALLRTPLIDLALHIVGGSEAVLEQARRFLEIRWLSAPASLANLVLLGWLLGVQYARAPVIL 164 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccchHHHHH
Confidence 99999999999999999998888888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 409 NIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 409 ~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
++++. ++++++++++.+..++|+.|+++|+.+++.+..++...++.+
T Consensus 165 ~ii~~-~vni~l~~~lI~~~~lGv~Gaa~At~is~~~~~i~~~~~~~~ 211 (441)
T PRK10367 165 LVVGN-ILNIVLDLWLVMGLHMNVQGAALATVIAEYATLLIGLLMVRK 211 (441)
T ss_pred HHHHH-HHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998 999999999988778999999999999999987776655544
No 19
>PRK10189 MATE family multidrug exporter; Provisional
Probab=99.89 E-value=1.5e-20 Score=186.29 Aligned_cols=204 Identities=17% Similarity=0.191 Sum_probs=188.6
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHH
Q 035514 249 TDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRA 328 (482)
Q Consensus 249 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 328 (482)
+..|++++.++|..++++.......+|+.+++++|+ .++++++++.++..+...+..+++.+..+.+++++|++|+++
T Consensus 26 ~~~k~il~la~P~~~~~~~~~~~~~vd~~~vg~lG~--~alAA~~i~~~i~~~~~~~~~gl~~g~~~lvsq~~Ga~~~~~ 103 (478)
T PRK10189 26 LFWREITPLAVPIFIENLCVLLMGVLSTFLVSWLGK--EAMAGVGLADSFNMVIMAFFAAIDLGTTVVVAFSLGKRDRRR 103 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 558999999999999999999999999999999985 456699999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC--CcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHH
Q 035514 329 AKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFT--SSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVA 406 (482)
Q Consensus 329 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~--~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 406 (482)
+++..+.++.+++.++++.+++..++++++.+++. .|+|+.+.+.+|+++..++.++..+.....+.+++.||++.++
T Consensus 104 ~~~~~~~~l~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~v~~~a~~Yl~i~~~~~~~~~~~~~~~~~lr~~G~~~~~~ 183 (478)
T PRK10189 104 ARAAARQSLVIMTLFAVLLAVLIHFFGEQIIDLVAGDATPEVKALALTYLELTVWSYPAAAITLIGSGALRGAGNTKIPL 183 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchHHhH
Confidence 99999999999999999999999999999999995 5889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhc----cCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 035514 407 YINIGSYYIFGLPLGYLLGYR----AKLGVTGLWSGMICGTALQTLLLLIVLY 455 (482)
Q Consensus 407 ~~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 455 (482)
..+++.. ++++++.+.+.+. +++|+.|+|+|+.+++.+..++..+.+.
T Consensus 184 ~i~~~~~-~~ni~l~~~li~g~~~~~~lGv~Gaa~At~is~~~~~~~~~~~~~ 235 (478)
T PRK10189 184 LINGGMN-ILNIIISSILIYGLFSWQGLGFVGAGLGLTISRYIGAVAIIWVLM 235 (478)
T ss_pred HHHHHHH-HHHHHHhHHHHhcCCCCCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998866 8999999988753 3689999999999999998777655443
No 20
>PRK01766 multidrug efflux protein; Reviewed
Probab=99.87 E-value=8.3e-20 Score=181.51 Aligned_cols=207 Identities=17% Similarity=0.166 Sum_probs=191.0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 035514 248 FTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPR 327 (482)
Q Consensus 248 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 327 (482)
++.+|+++++++|..++++.......+|+.+++++|+. ++++++++.++..+...+..+++.+..|.+++++|++|++
T Consensus 8 ~~~~~~il~~~~P~~~~~~~~~~~~~~d~~~i~~~g~~--~laa~~~~~~~~~~~~~~~~g~~~a~~~~vs~~~g~~~~~ 85 (456)
T PRK01766 8 KSEARQLLALALPILLAQVAQTAMGFVDTVMAGGVSAT--DLAAVAIGTSIWLPVILFGHGLLLALTPIVAQLNGAGRRE 85 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCChH
Confidence 46799999999999999999999999999999999854 4669999999988888899999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHH
Q 035514 328 AAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAY 407 (482)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 407 (482)
+.++..+.++.+++.++++.++++.++++++.+++..|++..+.+.+++++.+++.++..+.....+++++.||++.+++
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~yl~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 165 (456)
T PRK01766 86 RIAHQVRQGLWLALFLSVLIMLVLYNAVPPILNMMNLEPEVADIAVGYLHALLWGIPAYLLYQVLRSFIDGLGKTKPTMV 165 (456)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhc----cCCCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 035514 408 INIGSYYIFGLPLGYLLGYR----AKLGVTGLWSGMICGTALQTLLLLIVLYRT 457 (482)
Q Consensus 408 ~~~~~~~~~~i~~~~~l~~~----~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 457 (482)
.++++. ++++++.+++.+. +++|+.|+++++.+++.+..++..++.+|+
T Consensus 166 ~~~i~~-ivni~l~~~li~~~~~~~~~Gv~Gaa~at~is~~~~~~~~~~~~~~~ 218 (456)
T PRK01766 166 IGFLGL-LINIPLNYIFIYGKFGFPELGGVGCGVATAIVYWVMFLAMLIYIKRA 218 (456)
T ss_pred HHHHHH-HHHHHHHHHHHcCCCCCcccccccHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999988 8899999988752 458999999999999999888877666553
No 21
>PRK09575 vmrA multidrug efflux pump VmrA; Reviewed
Probab=99.87 E-value=3.2e-20 Score=183.56 Aligned_cols=205 Identities=16% Similarity=0.133 Sum_probs=191.7
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH
Q 035514 249 TDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHL-DNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPR 327 (482)
Q Consensus 249 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 327 (482)
+..|++++.++|..++++.......+|+.+++++ |+ .++++++++.++.++...+..+++.+..+.+++++|+||+|
T Consensus 9 ~~~k~i~~l~~P~~~~~l~~~l~~~~d~~~lg~~~g~--~~laa~~~~~~~~~~~~~~~~~~~~g~~~lvsq~~Ga~~~~ 86 (453)
T PRK09575 9 SIYRTFWRYTIPSIAAMLVNGLYQIVDGIFIGHYVGA--EGLAGINMAWPVIGIILGIGLMVGMGTGSLLSIKRGEGDLE 86 (453)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccH--HHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCHH
Confidence 4578999999999999999999999999999996 64 45679999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHH
Q 035514 328 AAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAY 407 (482)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~ 407 (482)
++++..+.++.++.+++++.+++...+++++.+++..|++..+.+.+|+++..++.++..+......++++.||++.++.
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~l~~~~~~~~~~~~~yl~i~~~~~~~~~l~~~~~~~l~~~g~~~~~~~ 166 (453)
T PRK09575 87 KAKRILTTGLLLLLLLGPIVSVILFLFADDFLRAQGAEGRTLELALQYIQVLIWGCLFTLGAIALPFLLRNDESPNLATG 166 (453)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHH
Confidence 99999999999999999999999999999999999989999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 408 INIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 408 ~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
.++.+. ++++++++++.+.+++|+.|+++++.+++.+..++..+++++
T Consensus 167 ~~~~~~-~~ni~l~~~li~~~~~Gi~Gaa~At~is~~~~~~~~~~~~~~ 214 (453)
T PRK09575 167 LMVIGA-LINIVLDYLFIGWLDWGLTGAAIATALAQLVVTVLGLGYFFS 214 (453)
T ss_pred HHHHHH-HHHHHhhHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 999887 999999999998778999999999999999988876665544
No 22
>TIGR01695 mviN integral membrane protein MviN. This model represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII.
Probab=99.83 E-value=1.1e-17 Score=168.71 Aligned_cols=206 Identities=12% Similarity=0.062 Sum_probs=184.8
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVH 107 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~ 107 (482)
+++..|++++.+.|..+++....+...+|+.+.+++|++++++++.+.++.+.....+..+++++..|.+++++|++|++
T Consensus 218 ~~~~~k~~l~~~~p~~~~~~~~~~~~~id~~~~~~~~~~~v~~~~~a~~l~~~~~~~~~~~i~~~~~P~~s~~~~~~~~~ 297 (502)
T TIGR01695 218 RDPGLKRFLKLFLPTTLGSSASQITLLINTALASFLEIGSVSALYYANRIYQLPLGIFGISLSTVLLPKLSRHASEGNWN 297 (502)
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence 45678999999999999999999999999988666699999999999998886543467789999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCC----CHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Q 035514 108 MLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQ----DDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVS 182 (482)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (482)
+.++..+.+.......+++..++ ..+++++..++.. |+|..+.+..++++.+++.++..+.....+.+++.||++
T Consensus 298 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ii~l~~~~~~f~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~a~g~~~ 377 (502)
T TIGR01695 298 ELRDLLNQGIRLSLLLTIPSSFGLLILSIPIVSLLFERGAFSEEDTVMTATILAAYGLGLIFYSLQKVLLRAFYARKDTR 377 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhccCCc
Confidence 99999999999999999988866 7889999987754 567788899999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 035514 183 AFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGW 235 (482)
Q Consensus 183 ~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 235 (482)
.+++.++...+++++++++++.. +|..|+++++.+++.+..++..++.+|+
T Consensus 378 ~~~~~~~~~~~i~i~l~~~l~~~--~G~~G~~~a~~i~~~~~~~~~~~~~~~~ 428 (502)
T TIGR01695 378 TPFINSVISVVLNALLSLLLIFP--LGLVGIALATSAASMVSSVLLYLMLNRR 428 (502)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHH--HhhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999998765 7999999999999999998888777643
No 23
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=99.80 E-value=3.4e-16 Score=144.79 Aligned_cols=270 Identities=17% Similarity=0.196 Sum_probs=207.3
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHH
Q 035514 36 WKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQ 114 (482)
Q Consensus 36 ~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 114 (482)
.|.+.....+++...+.+++...+++|+ |++++|.++...++.+++......|++++..+.+++...+ +++.+++..
T Consensus 2 ~k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~~ 79 (273)
T PF01943_consen 2 LKNSLWLFLSNILSALIGFITIPILARYLGPEEYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYFS 79 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHHH
Confidence 5778889999999999999999999997 9999999999999999876666899999999998886532 344455555
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHH
Q 035514 115 RSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALIL 194 (482)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 194 (482)
.......+.+++........ ..++.++... .+........++.........++++.++.+.....++...+.
T Consensus 80 ~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (273)
T PF01943_consen 80 SVLFLLLIFSLIFLLILLIA----SFFGNPSLSL----ILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISSLL 151 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHcCCchHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444333332221 2333332221 122222222257788888999999999999999999999888
Q ss_pred HHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Q 035514 195 HIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTS 274 (482)
Q Consensus 195 ~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 274 (482)
..++...++.. +.+..+..++..++..+..++...+.+|+.+.++... +++..|++++++.|..++++...+....
T Consensus 152 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 227 (273)
T PF01943_consen 152 SLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRRKLRPRFSFF---SKKFFKEILRFGLPLFLSSLLSWLYSQI 227 (273)
T ss_pred HHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccc---chHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 88777666655 3458899999999999988888887775443222222 2577999999999999999999999999
Q ss_pred HHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 035514 275 IIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNE 320 (482)
Q Consensus 275 ~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~ 320 (482)
|..+++++.+ +.++|.|+++.++......+..++.++..|.+++.
T Consensus 228 d~~ii~~~~g-~~~vg~Y~~a~~l~~~~~~~~~~~~~~~~P~~s~l 272 (273)
T PF01943_consen 228 DRLIIGYFLG-PEAVGIYSVAYRLASAISFLLSSISTVLFPRLSRL 272 (273)
T ss_pred HHHHHHHhCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999998876 44689999999999999999999999999999975
No 24
>TIGR00797 matE putative efflux protein, MATE family. The MATE family consists of probable efflux proteins including a functionally characterized multi drug efflux system from Vibrio parahaemolyticus, a putative ethionine resistance protein of Saccharomyces cerevisiae, and the functionally uncharacterized DNA damage-inducible protein F (DinF) of E. coli. These proteins have 12 probable TMS.
Probab=99.78 E-value=1.2e-16 Score=152.90 Aligned_cols=194 Identities=19% Similarity=0.258 Sum_probs=177.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 035514 260 ASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQ 339 (482)
Q Consensus 260 p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
|.+++++...+...+|+.+++++|++ ++++|+.+.++..+...+..+++++..|.++++.|++|+++.++..+.+..+
T Consensus 1 p~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~a~~i~~~~~~~~~~i~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~ 78 (342)
T TIGR00797 1 PAILANILQPLLGLVDTAFVGHLGPV--DLAAVSLGSSVFMFLFSILMGLGTATTALVAQAVGAGNYQRLGRQAQQSLLL 78 (342)
T ss_pred ChHHHHHHHHHHHHHHHHHHhcccHH--HHHHHHHhHHHHHHHHHHHHHHHHhHHHHHHHHHCCCChHHHHHHHHHHHHH
Confidence 67888999999999999999999854 4669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHH
Q 035514 340 SLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLP 419 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 419 (482)
...++++.++++.++++++.+++..|++..+.+.+++++++++.++.++.....+.+++.||++.+...++++. +++++
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~-~~~i~ 157 (342)
T TIGR00797 79 ALLLGLPVLLVGYFFIDPLLSLMGADGEVAELAQDYLRILILGIPAYLLNFVLRGFLRGQGDTKTPMYITLIGN-VINII 157 (342)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH-HHHHH
Confidence 99999999999999999999999877888888999999999999999999999999999999999999999988 88899
Q ss_pred HHHHHHh-ccC-CCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 420 LGYLLGY-RAK-LGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 420 ~~~~l~~-~~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+.+.+.+ ..+ +|+.|+++++.+++++..++...+.+|
T Consensus 158 ~~~~li~~~~g~~g~~g~~~~~~~~~~~~~~~~~~~~~~ 196 (342)
T TIGR00797 158 LNYILIFGKFGFLGIVGAALATVISYWLMFLLLLYYIKK 196 (342)
T ss_pred HhHHHHhcCccccccHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888876 555 779999999999999988877666554
No 25
>PF03023 MVIN: MviN-like protein; InterPro: IPR004268 This entry represents MviN, a family of integral membrane proteins predicted to have ten or more transmembrane regions. Although frequently listed as a virulence protein, it is not restricted to pathogens and it is an essential protein in Sinorhizobium meliloti. In a number of species its gene is adjacent to that of the uridylyltransferase GlnD, the signal-transducing enzyme that performs the key modification to the nitrogen regulatory protein PII []. Disruption of the MviN open reading frame results in flagellar structures that contain only the basal body and hook complex that lack the flagellum; suggesting that MviN might be involved in flagellin export or assembly []. Genome comparison studies led to MviN being predicted to be a peptidoglycan lipid II flippase though currently there is no direct evidence to support this annotation [].
Probab=99.78 E-value=6.7e-16 Score=151.89 Aligned_cols=209 Identities=14% Similarity=0.104 Sum_probs=192.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
...+..|++++...|.+++.....+...+|+.+.+++++.++++.+.+.++.++....+..++++...|..++...++|.
T Consensus 192 ~~~~~~~~~~~~~~p~~l~~~~~qi~~lv~~~laS~l~~G~vs~l~YA~~l~~lp~~i~~~~i~tv~~P~ls~~~~~~d~ 271 (451)
T PF03023_consen 192 WRDPNLKRFLKLAIPLLLSSSISQINILVDRALASFLGEGSVSALNYAQRLYQLPLGIFAVSISTVVFPKLSRLAAEGDW 271 (451)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCH
Confidence 34567899999999999999999999999999999999999999999999999876668889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLG----QDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKV 181 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 181 (482)
++.++.+++++...+.+.++.++. +.+++|+++.+. .|.|..+.....+++++++.|+..+..++.+.+.+.+|+
T Consensus 272 ~~~~~~~~~~l~~~~~i~iP~~~~~~~~a~~iV~llf~rG~F~~~~~~~ta~~l~~y~~~l~~~~l~~ll~r~fya~~~~ 351 (451)
T PF03023_consen 272 EEFRKTLRKALRLILLILIPASIGLIVLAEPIVRLLFERGAFTAEDTQLTASALRIYALGLPFYALNDLLSRVFYALGDT 351 (451)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHccCc
Confidence 999999999999999999999876 899999998663 267778888999999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhcc
Q 035514 182 SAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCK 237 (482)
Q Consensus 182 ~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~ 237 (482)
|.++..++++.++|++++.++... +|+.|.++++.++..+..++..+.++|+.+
T Consensus 352 ~~~~~~~~~~~~lni~l~~~l~~~--~g~~Glala~sl~~~i~~~~l~~~l~r~~~ 405 (451)
T PF03023_consen 352 KTPVRISVISVVLNIILSILLVPF--FGVAGLALATSLSAIISALLLYILLRRRLG 405 (451)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999888876 799999999999999999999888875544
No 26
>COG0728 MviN Uncharacterized membrane protein, putative virulence factor [General function prediction only]
Probab=99.75 E-value=1.5e-14 Score=140.06 Aligned_cols=212 Identities=11% Similarity=0.053 Sum_probs=191.0
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
.+.+..|++.+...|..++...+++..++|+.+.+.+.+.+.+.++.+..++++..-.+..++++...|..|+...++|.
T Consensus 226 ~~~~~lk~~~~~~~p~~l~~sisQi~lli~~~iAS~l~~Gsis~l~YA~rl~qlPlGifgvai~tvllP~lSr~~~~~~~ 305 (518)
T COG0728 226 FKDPGLKRFLKLMLPALLGVSISQINLLIDTAIASFLAEGSVSWLYYADRLYQLPLGIFGVALSTVLLPSLSRHAANGDW 305 (518)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhcCCh
Confidence 34478999999999999999999999999999999999999999999999999876568999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcC----CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCc
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLG----QDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKV 181 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~----~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~ 181 (482)
++.++..+.++..++++.++..+. ..+++|+++.+. .+++....+...++.+.++.++..+..+....+.+.+|+
T Consensus 306 ~~~~~~l~~~i~l~lll~lP~~~~l~~la~piv~~Lf~rG~F~~~d~~~ta~~L~~y~~gL~~~~L~~ll~~~FYAr~d~ 385 (518)
T COG0728 306 PEFLKLLDWGLRLTLLLTLPASAGLLVLAEPIVSLLFERGAFTAEDVLMTAEALAAYSLGLIPFALVKLLSRVFYAREDT 385 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCC
Confidence 999999999999999999999976 899999998662 256667778889999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 035514 182 SAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGW 240 (482)
Q Consensus 182 ~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 240 (482)
|.|+++.+++.++|+.+++.+... +|..|.++++.++..+++.+.++.++|+....+
T Consensus 386 ktP~~i~ii~~~~n~~l~~~l~~~--~~~~giala~s~a~~~~~~ll~~~l~k~~~~~~ 442 (518)
T COG0728 386 KTPMKIAIISLVVNILLNLLLIPP--LGHVGLALATSLAAWVNALLLYYLLRKRLVYLP 442 (518)
T ss_pred CcChHHHHHHHHHHHHHHHHHHhh--ccchHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 999999999999999999777665 688889999999999999988888876554443
No 27
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.75 E-value=2.2e-18 Score=146.00 Aligned_cols=162 Identities=27% Similarity=0.461 Sum_probs=155.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHH
Q 035514 260 ASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQ 339 (482)
Q Consensus 260 p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (482)
|.+++++.+...+.+++.+++++|+. ++++++++.++.++...+..+++++..+.+++++|++|++++++..++++.+
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~--~~a~~~i~~~~~~~~~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~ 78 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPE--ALAAYGIASSIFSILFMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLL 78 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTC--CCCHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHH--HHHHHHHHHHHHHHHhhhcccccccccceeeccccccccccccccccccccc
Confidence 88899999999999999999999754 4669999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHH
Q 035514 340 SLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLP 419 (482)
Q Consensus 340 ~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 419 (482)
...++++.++++.++++++.++|++|++..+.+.+++++..++.++.+......+++++.||++.++..++++.|++++|
T Consensus 79 ~~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~ 158 (162)
T PF01554_consen 79 SLIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIP 158 (162)
T ss_dssp HHHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHH
T ss_pred chhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHH
Q 035514 420 LGYL 423 (482)
Q Consensus 420 ~~~~ 423 (482)
++|+
T Consensus 159 l~yl 162 (162)
T PF01554_consen 159 LAYL 162 (162)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 9874
No 28
>TIGR02900 spore_V_B stage V sporulation protein B. SpoVB is the stage V sporulation protein B of the bacterial endopore formation program in Bacillus subtilis and various other Firmcutes. It is nearly universal among endospore-formers. Paralogs with rather high sequence similarity to SpoVB exist, including YkvU in B. subtilis and a number of proteins in the genus Clostridium. Member sequences for the seed alignment were chosen to select those proteins, no more than one to a genome, closest to B. subtilis SpoVB in a neighbor joining tree.
Probab=99.73 E-value=3.7e-15 Score=149.93 Aligned_cols=204 Identities=15% Similarity=0.128 Sum_probs=171.6
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChH---------HHHHH-HHHHHHHHHHHHHHHHHHHHhHHH
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEI---------ELSSA-AISLSVIGTFSFGLLLGMGSALET 95 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~---------~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~ 95 (482)
.+++..|++++.++|.+++++...+...+|+.+++++ ++. .+|.+ +.+.++..+. ..+..+++++..|
T Consensus 219 ~~~~~~k~l~~~~~p~~l~~~~~~~~~~~d~~ii~~~l~~~g~~~~~a~~~~g~~~~~a~~i~~~~-~~~~~~l~~~~~p 297 (488)
T TIGR02900 219 EGKALLFDLFSVSLPLTLSRFIGSLLYFLETLLVPQRLVIAGVTYREATSLYGKLSGMAMPLLTFP-AVITSSLSTALVP 297 (488)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHChHHHHHHhH-HHHHHHHHHHHHH
Confidence 3456889999999999999999999999999999885 321 22222 2444555555 3567899999999
Q ss_pred HHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Q 035514 96 LCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKF 174 (482)
Q Consensus 96 ~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~ 174 (482)
.++++.|++|+++.++..++........+++..++ ..+.++++.++..++ .+..++++.++..++..+.....+.
T Consensus 298 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~~~~~~~----~~~~~l~i~~~~~~~~~~~~~~~~~ 373 (488)
T TIGR02900 298 DISEAMAKKNYSSIEKRINQAIKISLLLGLITTVILLVIPDELGALFYGRP----DAGNFIRVLAPSFPFLYFSAPLQSI 373 (488)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999888765 778888888776543 3567899999999999999999999
Q ss_pred HHhcCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 035514 175 LQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGW 235 (482)
Q Consensus 175 l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 235 (482)
+++.||++.+++.++++.++|++++++++....+|+.|+++++++++.+..++..+..+|.
T Consensus 374 l~~~g~~~~~~~~~~~~~i~~i~l~~~l~~~~~~G~~Gaaia~~i~~~~~~~~~~~~~~~~ 434 (488)
T TIGR02900 374 LQGLGKQKVALRNSLIGAIVKIILLFVLTSIPSINIYGYAITFIITSVLVTILNLAEIKKN 434 (488)
T ss_pred HHhcCcchHHHHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999888743358999999999999999998888877643
No 29
>PF01554 MatE: MatE; InterPro: IPR002528 Characterised members of the Multi Antimicrobial Extrusion (MATE) family function as drug/sodium antiporters. These proteins mediate resistance to a wide range of cationic dyes, fluroquinolones, aminoglycosides and other structurally diverse antibodies and drugs. MATE proteins are found in bacteria, archaea and eukaryotes. These proteins are predicted to have 12 alpha-helical transmembrane regions, some of the animal proteins may have an additional C-terminal helix. ; GO: 0015238 drug transmembrane transporter activity, 0015297 antiporter activity, 0006855 drug transmembrane transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3MKU_B 3MKT_B.
Probab=99.72 E-value=4.2e-18 Score=144.31 Aligned_cols=160 Identities=26% Similarity=0.409 Sum_probs=152.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHH
Q 035514 41 PVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLIL 120 (482)
Q Consensus 41 p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~ 120 (482)
|.++++++..+.+.+|..+++++|++++++++++.++.++. ..+..|++++..+.++|++|++|++++++..+.++.+.
T Consensus 1 P~~~~~~~~~~~~~~~~~~~~~~g~~~~a~~~i~~~~~~~~-~~~~~g~~~a~~~~~s~~~G~~~~~~~~~~~~~~~~~~ 79 (162)
T PF01554_consen 1 PIALMQLLQVLGFIIDTIFVGRLGPEALAAYGIASSIFSIL-FMLIFGLATALQILISQNIGAGDYKRAKKVVRQGLLLS 79 (162)
T ss_dssp HHHHHHHHHHHHHHHHHHCCHCCTTCCCCHCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCCSSSTTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHH-hhhcccccccccceeecccccccccccccccccccccc
Confidence 89999999999999999999999999999999999999976 45899999999999999999999999999999999999
Q ss_pred HHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHH-HHHHHH
Q 035514 121 WVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVAL-ILHIVL 198 (482)
Q Consensus 121 ~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~i~l 198 (482)
.+.+++..++ +.+.+++..+++.|++..+.+..|+++..++.++..+.....+++++.||++..+..++... ++++++
T Consensus 80 ~~~~~~~~~~~~~~~~~i~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~l 159 (162)
T PF01554_consen 80 LIIGLLLSLVLLLFSEFILSLFGNDPEVIEIARQYLRIMAFSIPFFALFFVFSGILQGIGRTKIAMYISIISFWIINIPL 159 (162)
T ss_dssp HHHHHHHHHHHHHHHHCCHCTSSSTTCCHHHHHHHHCCHHHHHHHHHHHHHHCCCCGCCSTHCCCHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhHHHHHHHHhhhhHHHHHHhhccchhhhhHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHHHhH
Confidence 9999999877 88899999999999999999999999999999999999999999999999999999999998 999998
Q ss_pred HHH
Q 035514 199 LYV 201 (482)
Q Consensus 199 ~~~ 201 (482)
+|+
T Consensus 160 ~yl 162 (162)
T PF01554_consen 160 AYL 162 (162)
T ss_dssp HHH
T ss_pred HhC
Confidence 874
No 30
>PRK10459 colanic acid exporter; Provisional
Probab=99.70 E-value=1.3e-13 Score=138.68 Aligned_cols=200 Identities=14% Similarity=0.054 Sum_probs=170.6
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
+++..|++++++.|.+.+++...+...+|+.+++++ |++++|.|+.+.++.+.....+...+++...|..++. ++|+
T Consensus 202 ~~~~~k~ll~~~~~~~~~~~~~~~~~~~d~~~lg~~lg~~~vG~Y~~A~~l~~~~~~~i~~~i~~v~~P~~s~~--~~~~ 279 (492)
T PRK10459 202 SLASVKPNLSFGAWQTAERIINYLNTNIDTILIGRILGAEVLGGYNLAYNVATVPPMKINPIITRVAFPVFAKI--QDDT 279 (492)
T ss_pred cHHHHHHHHhhhHHHHHHHHHHHHHhcCchhhhhHhhchHhhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHh--cCCH
Confidence 456789999999999999999999999999999998 9999999999999888654445556778888999885 5678
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
++.++.+++.......+++++.++ ...++|++.++.+++ +..+...++++++...+..........+++.||++...
T Consensus 280 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~a~~ii~ll~g~~--~~~a~~~l~il~~~~~~~~~~~~~~~~l~a~g~~~~~~ 357 (492)
T PRK10459 280 EKLRVGFLKLLSVLGIINFPLLLGLMVVSNNFVPLVFGEK--WNSAIPILQLLCIVGLLRSVGNPIGSLLLAKGRADLSF 357 (492)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcChh--HHhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhH
Confidence 888999999999888888888865 788899987665433 56678899999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 035514 186 LIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVI 233 (482)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 233 (482)
..+++..+++++..+.+... +|+.|+++++.+++.+...+..++..
T Consensus 358 ~~~~~~~~~~i~~~~~~~~~--~G~~g~a~a~~i~~~~~~~~~~~~~~ 403 (492)
T PRK10459 358 KWNVFKTFLFIPAIVIGGQL--AGLIGVALGFLLVQIINTILSYFLMI 403 (492)
T ss_pred HHHHHHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99988888888776665543 79999999999999998888877774
No 31
>PRK15099 O-antigen translocase; Provisional
Probab=99.66 E-value=6e-14 Score=137.87 Aligned_cols=201 Identities=10% Similarity=-0.045 Sum_probs=169.4
Q ss_pred hhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhh-hcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q 035514 26 SVLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVG-HIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAG 104 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~ 104 (482)
+.+++..|++++.++|..+++....+...+|+.+++ ++|++++|.|+.+.++.+.+...+..+++++..|.++++ +
T Consensus 208 ~~~~~~~k~ll~~g~p~~~~~~~~~i~~~~~~~~l~~~~g~~~vg~y~~a~~i~~~~~~~~~~~~~~a~~P~~s~~---~ 284 (416)
T PRK15099 208 SWDNGLAGQLGKFTLMALITSVTLPVAYVMMRNLLAAHYSWDEVGIWQGVSSISDAYLQFITASFSVYLLPTLSRL---T 284 (416)
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C
Confidence 456778999999999999999999999999999997 569999999999999977443458889999999999995 5
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchh
Q 035514 105 HVHMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSA 183 (482)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~ 183 (482)
|+++.++..+.........+++..++ ++++++++.++..++ .+.+.+++++.+++..+...+.......-+.++.+.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~ii~l~~g~~--~~~~~~~~~~l~~~~~l~~~~~~~g~~~~~~~~~~~ 362 (416)
T PRK15099 285 EKRDITREIVKALKFVLPAVAAASFTVWLLRDFAIWLLFSNK--FTAMRDLFAWQLVGDVLKVGAYVFGYLVIAKASLRF 362 (416)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67788888888888888888777765 688999998887654 334677888888888887777777666778888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHh
Q 035514 184 FALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVI 233 (482)
Q Consensus 184 ~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~ 233 (482)
.....+...+++++++++++.. +|..|+++++.+++.+...+..+...
T Consensus 363 ~~~~~~~~~~l~i~l~~~li~~--~G~~G~a~a~~is~~~~~~~~~~~~~ 410 (416)
T PRK15099 363 YILAEVSQFTLLTGFAHWLIPL--HGALGAAQAYMATYIVYFSLCCGVFL 410 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888999999998876 79999999999999999988776555
No 32
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=99.62 E-value=2.6e-12 Score=117.23 Aligned_cols=247 Identities=20% Similarity=0.246 Sum_probs=176.6
Q ss_pred HHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035514 51 GTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLP 129 (482)
Q Consensus 51 ~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (482)
..+++...+++|+ |++++|.++....+..+.......|+.+.... ..++|+++.++..+.......+.+++..+
T Consensus 2 ~~~f~~~~~lar~l~~~~~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (251)
T PF13440_consen 2 GINFLFLILLARYLGPEDFGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAI 76 (251)
T ss_pred hHHHHHHHHHHHHCCHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467778889997 99999999999999987765556777766544 22355666666666655554444444333
Q ss_pred HHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 035514 130 IYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWG 209 (482)
Q Consensus 130 ~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g 209 (482)
+ ...+..+++ +++. ..++....+..+........++.+++.+|.+......+...+....+...+... +.+
T Consensus 77 ~---~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 147 (251)
T PF13440_consen 77 L---AILIAYFFG-DPEL----FWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRSLLRLLLLVLLLYL-GLN 147 (251)
T ss_pred H---HHHHHHHhC-ChhH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHH-Hhh
Confidence 2 112222333 3322 234556667778889999999999999999999999999988885555444443 348
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc-CCchHHH
Q 035514 210 TAGAAIAYDISSWIISIAQVIYVIGWCKDGWHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGH-LDNAIIA 288 (482)
Q Consensus 210 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~a 288 (482)
..+..++..++..+..++.....+++ .+.. . +.+..| ..+.+.|..+.++........|..+++. +| ..+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~li~~~l~--~~~ 218 (251)
T PF13440_consen 148 LWSILLAFIISALLALLISFYLLRRK--LRLS-F---KFSWRR-LLKYGLPFSLSSLLSWLLSQIDRLLIGYFLG--PEA 218 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc--cCCC-c---hhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--HHH
Confidence 88888888888888776665533321 1111 1 122234 7899999999999999999999999998 64 446
Q ss_pred HhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 035514 289 VGSLSICMNLNGWVI-MLFVGINAAISVRVSNE 320 (482)
Q Consensus 289 v~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~ 320 (482)
+|.|+++.++.+.+. .+..++++...|.++++
T Consensus 219 ~g~y~~a~~l~~~~~~~~~~~i~~~~~p~lar~ 251 (251)
T PF13440_consen 219 VGIYSVAQRLASLPASLLSSAISSVFFPKLARM 251 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 779999999999888 99999999999999863
No 33
>COG2244 RfbX Membrane protein involved in the export of O-antigen and teichoic acid [General function prediction only]
Probab=99.56 E-value=2.1e-12 Score=129.58 Aligned_cols=187 Identities=20% Similarity=0.253 Sum_probs=166.9
Q ss_pred hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 28 LRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 28 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
.++..|+.++.++|..++.+...+.+.+|+.+++++ |++++|.|+.+.++.... ..+...++.+..|.+++...++|+
T Consensus 208 ~~~~~~~~l~~~~p~~~~~~~~~l~~~~D~~~i~~~l~~~~vG~Y~~a~~i~~~~-~~~~~~l~~~l~P~~s~~~~~~~~ 286 (480)
T COG2244 208 SLALLKELLRFGLPLLLSSLLNFLFTNIDTLLLGLFLGPAQVGIYSAAQRLVSLL-LIVASALNRVLFPALSRAYAEGDR 286 (480)
T ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhHheecccccHHHHHH-HHHHHHHHHHHHHHHHHHHHcCcH
Confidence 367899999999999999999999999999999998 999999999888877766 458889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
++.++..++........+++..++ ..+++|++..+..++. ..+...+++.++..++..+.......+++.||.+...
T Consensus 287 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~~~~~i~~~fg~~~--~~~~~~l~il~~~~~~~~~~~~~~~~l~~~g~~~~~~ 364 (480)
T COG2244 287 KALKKLLRQSLKLLLLISIPALLGLLLLAPPIITLLFGEKY--ASAAPILQLLALAGLFLSLVSLTSSLLQALGKQRLLL 364 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhheeecCCcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHcCcchhhH
Confidence 999999999999999999999876 7888899876654432 2266788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHH
Q 035514 186 LIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDIS 220 (482)
Q Consensus 186 ~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~ 220 (482)
..+.++.++|.+++++++.. +|..|++.++ .+
T Consensus 365 ~~~~~~~i~~~~l~~~li~~--~g~~g~~~a~-~~ 396 (480)
T COG2244 365 LISLISALLNLILNLLLIPR--FGLIGAAIAT-AS 396 (480)
T ss_pred HHHHHHHHHHHHHHhHHHHh--hhhhhHHHHH-HH
Confidence 99999999999999999876 6888988888 44
No 34
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=99.27 E-value=2.1e-08 Score=99.75 Aligned_cols=417 Identities=15% Similarity=0.060 Sum_probs=244.9
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHhhhc-ChHHHHHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHH
Q 035514 37 KIAGPVVFNLLCLYGTNSFTNIFVGHI-GEIELSSAAISLSVIG-TFSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQ 114 (482)
Q Consensus 37 ~~~~p~~~~~~~~~~~~~~~~~~i~~~-g~~~~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~ 114 (482)
+.+.-+++.|++..+.+++.+-++-|. +|+.+|..++=..+.. .+.+.-=.++-.+.++.-.+...++|.++..+..+
T Consensus 5 ~gas~li~lQl~sRllTFvlN~lllR~lsp~ilGi~nv~LeLl~sTILFlSRE~fR~A~lR~~~~~~~~~~~~~~~n~~w 84 (549)
T PF04506_consen 5 KGASFLILLQLLSRLLTFVLNQLLLRFLSPEILGIANVQLELLYSTILFLSREAFRRACLRQPSSSIDKSNWAQSINLLW 84 (549)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccCcccHHHhhhccc
Confidence 456667888888888888866666665 9999998865554443 22122334555554433222211112223333323
Q ss_pred HHHHHHHHHHHHHHHHHH--hhHHH----HHHc-CCCHH---HHHHHHHHHHHhhhhHHH----HHHHHHHHHHHHhcCC
Q 035514 115 RSWLILWVTCIFLLPIYL--FSAPI----LKLL-GQDDE---IAKLAGKFTILTIPQLFS----LAISFPTQKFLQAQSK 180 (482)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~--~~~~i----~~~~-~~~~~---~~~~~~~~l~i~~~~~~~----~~~~~~~~~~l~~~~~ 180 (482)
.......++++++..+++ ...|. ..+. ...++ ..+.....+.+...+... ..+..+.+..+.-..|
T Consensus 85 ls~~lq~vvn~~~~~I~l~~igi~~~~~~~~~~~~~~~~~~~~~p~~~~~v~l~~~s~~iELlsEP~~il~Q~~l~~~~R 164 (549)
T PF04506_consen 85 LSVPLQAVVNLICSYIWLAWIGIPLSILLSQYQYASISNAFVIEPYFEPSVFLYGLSAFIELLSEPLYILAQQMLFFKLR 164 (549)
T ss_pred ccCcchhheehhHHHHhHhhccccHHHHHHHHHhhcchhhHHhhhhHHHHHHHHHHHHHHHHhhhHHHHHHHHHhhhhee
Confidence 333333333332222211 11111 1111 11111 111111222233333332 2334445566666667
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh-cCCccc------hhHHHHHHHHHHHHHHHHHHHh----hh---cccccCCCCH-
Q 035514 181 VSAFALIGFVALILHIVLLYVFIYA-FGWGTA------GAAIAYDISSWIISIAQVIYVI----GW---CKDGWHGLTW- 245 (482)
Q Consensus 181 ~~~~~~~~~~~~~~~i~l~~~li~~-~~~g~~------g~~~a~~i~~~~~~~~~~~~~~----~~---~~~~~~~~~~- 245 (482)
.+.-........+.+..+....... .+++.. -+.++..++++...+....... +. .....++...
T Consensus 165 v~~E~~A~~~k~i~t~~~v~~~~~~~~~~~~~~~~~~~~~~l~Falgq~~ys~~l~~~y~~~~~~~~~~~s~~lp~i~~~ 244 (549)
T PF04506_consen 165 VKAESLAVFAKCIVTFALVVLAERSGYGFFYFLSGQEGLAILAFALGQLAYSITLFFCYYWMYFFPFKSFSDLLPKISSG 244 (549)
T ss_pred eEechHHHHHHHHHHHHHHHHHHhcccceeeeeccchhHHHHHHHHHHHHHHHHHHhhHHhhccCcccchhhcccccccc
Confidence 7777777666666666554443221 111111 1234455555554433221111 11 1111111111
Q ss_pred --HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhc--CCchHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHh
Q 035514 246 --AAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGH--LDNAIIAVGSLSICMNLNGWVI-MLFVGINAAISVRVSNE 320 (482)
Q Consensus 246 --~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~--~~~~~~av~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~ 320 (482)
+....-++.++........++.-.+....|.+++.. +.+ ...-|.|++++++.+++. .+...+-.+.....++.
T Consensus 245 ~~~~~~fd~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t-~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~ 323 (549)
T PF04506_consen 245 NPKSYYFDRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLT-FEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKL 323 (549)
T ss_pred ccccccCCHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCC-HHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 011123678888888889999999999999888887 554 223469999999998765 56667888888888888
Q ss_pred hcCCCh---------HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHH
Q 035514 321 LGMGRP---------RAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPV 391 (482)
Q Consensus 321 ~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~ 391 (482)
..+++. ++..+.....++....+++.+..+-...++.+.+++.+++-....+...++.++...++.+++.+
T Consensus 324 l~~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi 403 (549)
T PF04506_consen 324 LSRDNSKKKQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGI 403 (549)
T ss_pred hcccCchhhccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccH
Confidence 765433 44666777778888888877777777777788888765432233357789999999999999999
Q ss_pred HHHHHhhcCcchhHHHHHH---HHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 392 LSGVAIGGGWQALVAYINI---GSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 392 ~~~~l~~~g~~~~~~~~~~---~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
.....++..+.+.....+- ... .+.+..++.+... ++|..|..+|..+.+.++...+..+++|
T Consensus 404 ~EaF~~s~a~~~~l~~~~~~m~~~S-~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~ 469 (549)
T PF04506_consen 404 TEAFVFSVASESQLDRYNYWMVVFS-AIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRR 469 (549)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHH-HHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999877665443332 222 5666777888765 6899999999999999999988877765
No 35
>KOG1347 consensus Uncharacterized membrane protein, predicted efflux pump [General function prediction only]
Probab=99.27 E-value=7.6e-10 Score=108.38 Aligned_cols=205 Identities=18% Similarity=0.239 Sum_probs=183.9
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhcCCCh
Q 035514 248 FTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGW-VIMLFVGINAAISVRVSNELGMGRP 326 (482)
Q Consensus 248 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~-~~~~~~~~~~a~~~~~~~~~~~~~~ 326 (482)
..+.|++.+++.|..+....+.....++..+.+|+|+.+.+ +.+++....+. ...+..++..+..|.+++++|++++
T Consensus 24 ~~e~k~l~~ia~P~i~~~~~~~~~~~is~~f~GhlG~leLa--a~sla~s~~n~~~~s~~~gl~~aletlcgQa~ga~~~ 101 (473)
T KOG1347|consen 24 VTESKELARLALPAILTFLAQPLLSLVSTAFAGHLGNLELA--SVSLANSFANITGVSILLGLQLALDTLCGQAFGAKKF 101 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhccccchHHH--HHHHHHHhhcccchHHhhccchhhhcchHhhhccccc
Confidence 47789999999999999999999999999999999987655 88888877766 4568889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHH
Q 035514 327 RAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVA 406 (482)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 406 (482)
+.......++........++.... +.+.+++...+.+|+++...+..+.++.....+-..........+|+.++.....
T Consensus 102 ~~lg~~lqrs~~~l~~~~~~~~~l-~~~~~~il~~lgq~~~i~~~a~~y~~~~ip~~~a~~~~~~l~~~lq~Q~~~~~~~ 180 (473)
T KOG1347|consen 102 TALGVYLQRSGIVLLVQGLPISLL-ILNSEPILLLLGQDPDISRDAGSYAFMLIPGLFSYAVSFPLAKFLQAQSITLPLL 180 (473)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH-HHccHHHHHHhCCChhHHHHHhhhHhhhcchhhhhHHHHHHHHHHHhccCchHHH
Confidence 999999999988888888877765 4556999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 407 YINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 407 ~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+...... .+++++++++.+..++|..|++.+..+++.+.......+...
T Consensus 181 ~~~~~~~-~lhi~~~~llv~~~~~g~~Gaala~~~s~w~~~~~l~~yi~~ 229 (473)
T KOG1347|consen 181 VIGLVAL-VLHILLTWLLVSKLGLGIKGAALALVASYWLNVRILLLYAVL 229 (473)
T ss_pred HHHHHHH-HHHHHHHHHhhhcccCCCccchHHHHHHHHHHHHHHHHHhee
Confidence 9988888 999999999999999999999999999999877776665544
No 36
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.25 E-value=3.3e-07 Score=85.33 Aligned_cols=412 Identities=12% Similarity=0.009 Sum_probs=234.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh-cChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCC---c
Q 035514 31 ETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGH-IGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGH---V 106 (482)
Q Consensus 31 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~---~ 106 (482)
....-.+.+...+..|++..+.++..+.++=| ++++.+|..++-..+.+-. + . =++.-..+.-....|..+ .
T Consensus 6 vL~ss~~ga~~~i~~Q~~~RiiTF~lN~~liR~~s~~v~gi~nvrl~lL~sT-i-L--FlsREair~A~l~~gs~~~d~~ 81 (530)
T KOG2864|consen 6 VLESSFSGAVFSIRGQLLARIITFALNALLIRFLSPEVLGIVNVRLELLQST-I-L--FLSREAIRLAELRIGSEPADTW 81 (530)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHcChhheehhHHHHHHHHHH-H-H--HhhHHHHHHHhccCCCCCCccH
Confidence 44455566667777777777777765555555 5999999988766655522 1 1 122222333333344333 3
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHc-CCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLL-GQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~-~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
.+..+..+.+..++.+..+++.-+|+-...-.... ..+. -..-..+...+.+.-.+...+.-..|...+.+.-.
T Consensus 82 te~~n~~wlS~~L~~~i~~~~i~~wl~~~~s~d~i~~~p~-----y~~~I~~~~~S~vvELlsEp~~iv~Q~~~~~~~~~ 156 (530)
T KOG2864|consen 82 TEFINLLWLSVPLQTAINVACIYFWLGFLSSSDEISYSPL-----YAFAIFIIGLSIVVELLSEPLYIVSQCGLKVQLRA 156 (530)
T ss_pred HHHHHhhhhhhhHHHHHHHHHHHHHHHHhhccchhhcCch-----HhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 35555666666666666666554322111111100 1111 11112233333333333444444455555566666
Q ss_pred HHHHHHHHHHHHHHHHHH-HhcC-CccchhHHHHHHHHHHHHHHHHHHHhhhccc------------ccCCCCHH--HHH
Q 035514 186 LIGFVALILHIVLLYVFI-YAFG-WGTAGAAIAYDISSWIISIAQVIYVIGWCKD------------GWHGLTWA--AFT 249 (482)
Q Consensus 186 ~~~~~~~~~~i~l~~~li-~~~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~------------~~~~~~~~--~~~ 249 (482)
+..-+..++..+..+... .+.+ +++.-.++|.........+++++++.+..+. ..++.... ...
T Consensus 157 i~e~l~~~v~~i~~fa~lv~~~~~~~l~~FAlaql~~~itl~l~y~~~Yf~~~~s~~~~~~~~r~Sdllpk~~~n~~~~f 236 (530)
T KOG2864|consen 157 IAEGLATIVKCIVLFAGLVMGPNMYALLAFALAQLAYAITLLLCYYWFYFYIRGSIPETEPFSRFSDLLPKVSENERGIF 236 (530)
T ss_pred HHhHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcccccchhhhhhhccCCCCCCcccc
Confidence 666666666633333333 2222 3344444444444444444333333321110 00110000 000
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC---CchHHHHhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCC
Q 035514 250 DIWAFVRLSLASAVMLCLEIWYMTSIIILTGHL---DNAIIAVGSLSICMNLNGWVI-MLFVGINAAISVRVSNELGMGR 325 (482)
Q Consensus 250 ~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~---~~~~~av~~~~~~~~i~~~~~-~~~~~~~~a~~~~~~~~~~~~~ 325 (482)
.-++..+.........+.-.+....+..+++.. .-++.+ .|.++++..++.. .+...+-.......++...+++
T Consensus 237 fd~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~Qg--vYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~ 314 (530)
T KOG2864|consen 237 FDNDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQG--VYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDN 314 (530)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhh--HHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccc
Confidence 123445555555555556666666665555532 223555 8999988887665 5666788888888888887777
Q ss_pred hHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcc
Q 035514 326 PRAAKYS---VYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQ 402 (482)
Q Consensus 326 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~ 402 (482)
.|+.|+. ....++....+++..+.+-...++.+..++.+++-.-..+...++++++..++.+++.+..+...+.++.
T Consensus 315 qe~~k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~ 394 (530)
T KOG2864|consen 315 QENVKKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATS 394 (530)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccH
Confidence 6666654 4556666666666666666666778888876643222335578999999999999999999999998766
Q ss_pred hhHHHH---HHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 403 ALVAYI---NIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 403 ~~~~~~---~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+..-.. ..+.. ++.+.++|++..+ +|..|...|..+.+.++-+....++++
T Consensus 395 ~qi~~~n~~mlafS-viflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~ 448 (530)
T KOG2864|consen 395 RQIDKHNKFMLAFS-VIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRH 448 (530)
T ss_pred HHHHhcccchhHHH-HHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 544222 22333 6677889999877 899999999999988887777655555
No 37
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=99.01 E-value=2.3e-06 Score=76.39 Aligned_cols=316 Identities=12% Similarity=0.064 Sum_probs=186.7
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc--Ch-HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCC
Q 035514 29 RTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI--GE-IELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGH 105 (482)
Q Consensus 29 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~--g~-~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~ 105 (482)
...++++.++-+|+.++.....+...+.+.-++|- .+ +.+++++++.++.-++. .+...+-+....++ +++
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~-sp~~~~~~igl~~V-----~s~ 80 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFA-SPLSMFHHIGLVFV-----NSK 80 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHh-ChhhhhHHHHHHHh-----cch
Confidence 34678899999999999999999999888888873 34 45999999998776653 35545554443333 333
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHH-HH-hhHHHH-HHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCch
Q 035514 106 VHMLGVYMQRSWLILWVTCIFLLPI-YL-FSAPIL-KLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVS 182 (482)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~~~~i~-~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~ 182 (482)
+++.+. +......+.+.+.+..++ +- +...++ ..++.++++.+.+...+.++.+.-.+.++...+++++-=++++.
T Consensus 81 rsrr~~-vl~~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~ 159 (345)
T PF07260_consen 81 RSRRKA-VLCMAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSW 159 (345)
T ss_pred hhhHHH-HHHHHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhcccee
Confidence 332222 222222222222222222 32 223333 56788999999999999999999999999999999987667777
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHh-cC--CccchhHHHHHHHHHHHHHHH-HHHHh--hhcccccCCCCHHHHHHHHHHHH
Q 035514 183 AFALIGFVALILHIVLLYVFIYA-FG--WGTAGAAIAYDISSWIISIAQ-VIYVI--GWCKDGWHGLTWAAFTDIWAFVR 256 (482)
Q Consensus 183 ~~~~~~~~~~~~~i~l~~~li~~-~~--~g~~g~~~a~~i~~~~~~~~~-~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 256 (482)
.....++...+..+++...+... .+ .+..--..+...+..+.+.+. .-++. ++......+.+.+.....+++++
T Consensus 160 iV~~aSI~~v~~qvV~v~~ll~~~l~~~~pllipil~~y~g~~vr~t~v~LGy~~~i~~~~p~~~~~~~~~~~tl~~~l~ 239 (345)
T PF07260_consen 160 IVGSASIADVIAQVVLVAILLSMHLEPQDPLLIPILALYAGIAVRFTIVCLGYYQSIHDIIPQLSGLEKGDSATLQRMLK 239 (345)
T ss_pred EeehHHHHHHHHHHHHHHHHHccccCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcccCCChhHHHHHH
Confidence 77777776666666655555532 11 111111122222322222222 22221 23333333334444467899999
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHhc-CCch---HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChH-----
Q 035514 257 LSLASAVMLCLEIWYMTSIIILTGH-LDNA---IIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPR----- 327 (482)
Q Consensus 257 ~~~p~~~~~~~~~~~~~~~~~~~~~-~~~~---~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~----- 327 (482)
+.+|.+...........+.+.++++ +++. ..|++...+.+.+....+.-.+-+ .+..|..-++--+++..
T Consensus 240 F~~PL~~~~~tq~~SrplVnl~vsR~l~gs~a~~~avavl~~~ypvgh~~y~w~~~~-r~~~paf~~~~~~~~~~~~~~~ 318 (345)
T PF07260_consen 240 FWWPLALVLATQRISRPLVNLFVSRDLSGSQAATEAVAVLTATYPVGHMPYGWLTEL-RAVYPAFDKNNPQNKLRNCGNP 318 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCcccchhhhhhhccccCCCcCcchhHHhH-HhhCchhhccCcccccccccCc
Confidence 9999999999999999999999998 5553 245555555544443333222211 12223221111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 035514 328 AAKYSVYVTVFQSLLIGLLFMIIIL 352 (482)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (482)
-.+...++....++.+++..+..++
T Consensus 319 v~~~~~~kf~~~c~~~sl~~~f~~f 343 (345)
T PF07260_consen 319 VTQSHISKFVVLCLLLSLALCFVMF 343 (345)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 1233666777777777776665544
No 38
>PF04506 Rft-1: Rft protein; InterPro: IPR007594 Asymmetric lipid distribution is a fundamental characteristic of biological lipid bilayers, one such axample is the translocation of the Man5GlcNAc2-PP-Dol intermediate from the cytosolic side of the ER membrane to the lumen before the completion of the biosynthesis of Glc3Man9GlcNAc2-PP-Dol []. RFT1 encodes an evolutionarily conserved protein required for this translocation.; GO: 0005319 lipid transporter activity, 0006869 lipid transport, 0016021 integral to membrane
Probab=98.50 E-value=2.4e-05 Score=78.26 Aligned_cols=206 Identities=11% Similarity=0.061 Sum_probs=161.2
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHhhh--c-ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc--
Q 035514 32 TVKMWKIAGPVVFNLLCLYGTNSFTNIFVGH--I-GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV-- 106 (482)
Q Consensus 32 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~--~-g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~-- 106 (482)
-++.++.......+.+...+.+--|.+++.. + ..++.|.|+++.++-+++.=.+...+..+.-...++...+++.
T Consensus 252 d~~~l~l~~~~~~Qsi~K~lLTEGdk~vl~~~~~~t~~~QGvY~lv~N~GSLvaR~lF~PiEEs~~~~Fsk~l~~~~~~~ 331 (549)
T PF04506_consen 252 DRDLLSLTWSFFFQSILKHLLTEGDKLVLSFFNLLTFEDQGVYALVSNYGSLVARLLFQPIEESSRLYFSKLLSRDNSKK 331 (549)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhhCCeEEEEeeccCCHHHhhHHHHHhhHHHHHHHHHhCcHHHHHHHHHHHHhcccCchh
Confidence 4678889999999999999999999999999 7 8899999999999988877778888988888888888765433
Q ss_pred -------chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhc
Q 035514 107 -------HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQ 178 (482)
Q Consensus 107 -------~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~ 178 (482)
++..+.+...+.+...++++.... ...++.++.+++.+.=..+.+...++..+..+|+.+++.+..++.++.
T Consensus 332 ~~~~~~~~~~~~~l~~ll~~~~~~gl~~~~fG~~~s~~lL~~~~g~~w~~~~~~~~l~~yc~yi~~la~NGi~EaF~~s~ 411 (549)
T PF04506_consen 332 KQPQESLKQAANVLSNLLKFYLYLGLVIVAFGPPYSPLLLRLLGGSRWSSTSAPSLLRAYCYYIPFLAINGITEAFVFSV 411 (549)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHHhChhhHHHHHHHHhhhcccCCCchHHHHHHHHHHHHHHHccHHHHHHHHh
Confidence 234556666777777777777655 667777777765432223345677899999999999999999999888
Q ss_pred CCchhHHHH---HHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhccc
Q 035514 179 SKVSAFALI---GFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKD 238 (482)
Q Consensus 179 ~~~~~~~~~---~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~ 238 (482)
...+-.... ..+..++-+..++++... ++|..|..+|.++......+....+.+|.++.
T Consensus 412 a~~~~l~~~~~~m~~~S~~f~~~~~~l~~~-~~G~~GlI~AN~iNM~lRI~ys~~fI~~~~~~ 473 (549)
T PF04506_consen 412 ASESQLDRYNYWMVVFSAIFLAASYLLTRW-GLGAVGLILANCINMSLRIIYSLRFIRRYFRN 473 (549)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 766555444 344456667777888876 78999999999999999999888888754443
No 39
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.46 E-value=3.7e-05 Score=63.45 Aligned_cols=81 Identities=28% Similarity=0.331 Sum_probs=73.8
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhh
Q 035514 155 TILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIG 234 (482)
Q Consensus 155 l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~ 234 (482)
+++.+++.++..+.......+++.||++..+..+.++.++|+++++.++.. +|..|+++++.+++.....+..++.+|
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~k 79 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGAIVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVRK 79 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567888999999999999999999999999999999999999999999765 899999999999999999988888875
Q ss_pred hcc
Q 035514 235 WCK 237 (482)
Q Consensus 235 ~~~ 237 (482)
+.+
T Consensus 80 ~~~ 82 (146)
T PF14667_consen 80 KIG 82 (146)
T ss_pred HhC
Confidence 443
No 40
>PF14667 Polysacc_synt_C: Polysaccharide biosynthesis C-terminal domain
Probab=98.18 E-value=1.4e-05 Score=66.07 Aligned_cols=79 Identities=16% Similarity=0.206 Sum_probs=73.4
Q ss_pred HHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHH
Q 035514 376 AFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLY 455 (482)
Q Consensus 376 l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~ 455 (482)
+++++++.++.++.....+.+++.||+|..++.++.+. ++++++++.+.+. +|..|+++++.+++.....+..+..+
T Consensus 2 l~il~~~~~~~~l~~~~~~il~~~~k~~~~~~~~~~~~-~v~i~~~~~li~~--~G~~Gaa~a~~i~~~~~~~~~~~~~~ 78 (146)
T PF14667_consen 2 LQILALAIIFMGLSQPLGSILQAMGKTKWPFIITLIGA-IVNIILNYILIPR--FGIYGAAIATAISEIVSFILNLWYVR 78 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHH-HHHHHHHHHHHHH--HHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999999999999999999998 9999999999765 99999999999999999998888887
Q ss_pred Hh
Q 035514 456 RT 457 (482)
Q Consensus 456 ~~ 457 (482)
|.
T Consensus 79 k~ 80 (146)
T PF14667_consen 79 KK 80 (146)
T ss_pred HH
Confidence 74
No 41
>PF07260 ANKH: Progressive ankylosis protein (ANKH); InterPro: IPR009887 This family consists of several progressive ankylosis protein (ANK or ANKH) sequences. The ANK protein spans the outer cell membrane and shuttles inorganic pyrophosphate (PPi), a major inhibitor of physiologic and pathologic calcification, bone mineralisation and bone resorption []. Mutations in ANK are thought to give rise to Craniometaphyseal dysplasia (CMD) which is a rare skeletal disorder characterised by progressive thickening and increased mineral density of craniofacial bones and abnormally developed metaphyses in long bones [].; GO: 0015114 phosphate ion transmembrane transporter activity, 0035435 phosphate ion transmembrane transport, 0016021 integral to membrane
Probab=98.15 E-value=0.0017 Score=58.54 Aligned_cols=160 Identities=12% Similarity=0.130 Sum_probs=108.5
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcC-CchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCh
Q 035514 248 FTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHL-DNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRP 326 (482)
Q Consensus 248 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 326 (482)
..+.++++++-.|.++++....+.-++.+.-+++- .+....+++|+++..+.-++..+...+.++....+.. +.
T Consensus 7 ~~~y~~li~F~iPLa~ts~~~dl~~qiiNagLAr~~e~~vetLAsfglA~sL~lf~~sp~~~~~~igl~~V~s-----~r 81 (345)
T PF07260_consen 7 LTSYWPLIRFFIPLAITSLAMDLGEQIINAGLARVQEDPVETLASFGLAYSLMLFFASPLSMFHHIGLVFVNS-----KR 81 (345)
T ss_pred cchHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhChhhhhHHHHHHHhcc-----hh
Confidence 35688999999999999999999998888777663 3333457799999999999998888888776665443 22
Q ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHhhhhh-hhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchh
Q 035514 327 RAAKYSVYVTVFQSLLIG-LLFMIIILLTKDY-FAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQAL 404 (482)
Q Consensus 327 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~ 404 (482)
++-+-... ....+.... +...+..--++.+ +.+++.-|+++.+.+...+.++.+..+++++.....+++.=.+++..
T Consensus 82 srr~~vl~-~~vag~v~avi~~LIa~TpLG~~li~~lhgVs~~va~~tr~a~l~L~llPfl~alr~~~qGILik~r~s~i 160 (345)
T PF07260_consen 82 SRRKAVLC-MAVAGAVAAVIHLLIAWTPLGNYLINDLHGVSPSVAEKTRRAFLYLTLLPFLDALRWIHQGILIKHRHSWI 160 (345)
T ss_pred hhHHHHHH-HHHHHHHHHHHHHHHHhCchHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhccceeE
Confidence 22222211 111111111 1112222223333 33455568899999999999999999999999999998775566666
Q ss_pred HHHHHHHHH
Q 035514 405 VAYINIGSY 413 (482)
Q Consensus 405 ~~~~~~~~~ 413 (482)
....++...
T Consensus 161 V~~aSI~~v 169 (345)
T PF07260_consen 161 VGSASIADV 169 (345)
T ss_pred eehHHHHHH
Confidence 665555544
No 42
>PF01943 Polysacc_synt: Polysaccharide biosynthesis protein; InterPro: IPR002797 Members of this family are integral membrane proteins [], and many are implicated in the production of polysaccharide. The family includes RfbX part of the O antigen biosynthesis operon [], and SpoVB from Bacillus subtilis (Q00758 from SWISSPROT), which is involved in spore cortex biosynthesis [].; GO: 0000271 polysaccharide biosynthetic process, 0016020 membrane
Probab=98.07 E-value=0.0013 Score=60.47 Aligned_cols=186 Identities=21% Similarity=0.224 Sum_probs=110.2
Q ss_pred HHHhHHHHHHHHHHHHHHHHH-HHHhcCCchHHHHhHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhcCCChHHHHHHH
Q 035514 256 RLSLASAVMLCLEIWYMTSII-ILTGHLDNAIIAVGSLSICMNLNGWVIML-FVGINAAISVRVSNELGMGRPRAAKYSV 333 (482)
Q Consensus 256 ~~~~p~~~~~~~~~~~~~~~~-~~~~~~~~~~~av~~~~~~~~i~~~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 333 (482)
|-+......+........+.. ++...+|++ ..|.|+....+.++...+ ..|++++..-..++...+ .+..++..
T Consensus 3 k~~~~~~~~~~~~~~~~~~~~~il~r~l~~~--~~G~~~~~~~~~~~~~~~~~~G~~~~~~r~~~~~~~~--~~~~~~~~ 78 (273)
T PF01943_consen 3 KNSLWLFLSNILSALIGFITIPILARYLGPE--EYGIYSLALSIVSLLSILADLGLSQAIVRFIAEYKDK--KELRSAYF 78 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCHH--HhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhh--HHHHHHHH
Confidence 334445555555555555554 444455543 466999999998887765 677888887777765432 23333333
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH
Q 035514 334 YVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSY 413 (482)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~ 413 (482)
...........+.... ...+...+.+++. . ..+........++.........++++.++.+.....++...
T Consensus 79 ~~~~~~~~~~~~i~~~-----~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (273)
T PF01943_consen 79 SSVLFLLLIFSLIFLL-----ILLIASFFGNPSL-S---LILIILALLILILSSLSSVFSGLLQGLQRFKYIAISNIISS 149 (273)
T ss_pred HHHHHHHHHHHHHHHH-----HHHHHHHcCCchH-H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333322222222 2222223433321 1 11222222222577888889999999999999988888887
Q ss_pred HHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 414 YIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 414 ~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
+..+.....+... ..+..+...+..++..+...+.....+|
T Consensus 150 -~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (273)
T PF01943_consen 150 -LLSLLLILLLLFL-GSSLWGFLLGLVISSLVSLIISLFYLRR 190 (273)
T ss_pred -HHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555554433 2348888899999888887777766664
No 43
>KOG2864 consensus Nuclear division RFT1 protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.89 E-value=0.00086 Score=63.18 Aligned_cols=201 Identities=9% Similarity=0.039 Sum_probs=139.2
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhhhc---ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCcchH
Q 035514 33 VKMWKIAGPVVFNLLCLYGTNSFTNIFVGHI---GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHVHML 109 (482)
Q Consensus 33 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~---g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~~~~ 109 (482)
++..+.......+.+...+.+=-|.++++-+ .-++.|.|..+.+.-+++.-.+...+....-.+.+|...++++|+.
T Consensus 239 ~d~~~~~~s~~~Qs~lKqlLTeGdkyvmt~~~~ls~~~QgvYd~v~n~GSLlaR~iF~PIEEss~~~FA~~ls~~~qe~~ 318 (530)
T KOG2864|consen 239 NDLLKLTKSFTFQSFLKQLLTEGDKYVMTFTELLSFGDQGVYDLVSNYGSLLARLIFRPIEESSYIYFARLLSRDNQENV 318 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHhhcccceeEeeeccCCcchhhHHHHHHhhhhHHHHHHhChhHHHHHHHHHHHhhccchhhH
Confidence 4455555556666677777777788888743 5557777777777666666667778888888888888877766665
Q ss_pred HH---HHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 110 GV---YMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 110 ~~---~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
++ ++...+.....++++.... ...+++.+.+++++.-....+...+++.+..+|+.+++.+..++..+....+-.-
T Consensus 319 k~a~~vL~~lLklv~~igli~~~FG~~YS~~vL~lygG~kwss~~~~~lL~~YclYI~~lAiNGitEaF~~A~~t~~qi~ 398 (530)
T KOG2864|consen 319 KKAVDVLSNLLKLVIYIGLIFITFGPAYSYVVLLLYGGSKWSSGGGSLLLSWYCLYIPFLAINGITEAFAFAVATSRQID 398 (530)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCccccHHHHHHHcCccccCCCchHHHHHHHHHHHHHHhccHHHHHHHHhccHHHHH
Confidence 54 4455566666666665544 5566677777765432233344679999999999999999999998876544333
Q ss_pred ---HHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhh
Q 035514 186 ---LIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGW 235 (482)
Q Consensus 186 ---~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~ 235 (482)
....+..+.-.+.+++++.. +|..|..+|.++...+..+....+.++.
T Consensus 399 ~~n~~mlafSviflilsylL~~~--~~~~GlIlANiiNm~lRIlys~~fI~~~ 449 (530)
T KOG2864|consen 399 KHNKFMLAFSVIFLILSYLLIRW--FGLVGLILANIINMSLRILYSLRFIRHY 449 (530)
T ss_pred hcccchhHHHHHHHHHHHHHHHH--hchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23344456667888888887 5669999999988888777666666543
No 44
>PF13440 Polysacc_synt_3: Polysaccharide biosynthesis protein
Probab=97.79 E-value=0.0076 Score=54.58 Aligned_cols=160 Identities=17% Similarity=0.258 Sum_probs=101.7
Q ss_pred HHHHhcCCchHHHHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 035514 276 IILTGHLDNAIIAVGSLSICMNLNGWVIMLF-VGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLT 354 (482)
Q Consensus 276 ~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 354 (482)
.++...+++++ .|.|+....+..+...+. .++.+...- ..++|.++.++..+..........+...++
T Consensus 9 ~~lar~l~~~~--~G~~~~~~s~~~~~~~~~~~g~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (251)
T PF13440_consen 9 ILLARYLGPED--FGIYALIFSIVSILSIVASLGLRQSLVR-----SAARDKQDIRSLLRFSLLVSLLLAVILAIL---- 77 (251)
T ss_pred HHHHHHCCHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hhccCHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 35555566544 569999988888777653 444443322 234566666776666665544444443333
Q ss_pred hhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhccCCCcch
Q 035514 355 KDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTG 434 (482)
Q Consensus 355 ~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g 434 (482)
...+...+ ++++ ...++.+.++..++..........+++.+|.+......+... +..+.....+... +.+..+
T Consensus 78 ~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~ 150 (251)
T PF13440_consen 78 AILIAYFF-GDPE----LFWLLLLLALAIFFSALSQLFRSILRARGRFRAYALIDIVRS-LLRLLLLVLLLYL-GLNLWS 150 (251)
T ss_pred HHHHHHHh-CChh----HHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH-HHHHHHHHHHHHH-HhhHHH
Confidence 23333333 3332 234556777778888999999999999999999998888877 5444444444332 237888
Q ss_pred hhHHHHHHHHHHHHHHHHH
Q 035514 435 LWSGMICGTALQTLLLLIV 453 (482)
Q Consensus 435 ~~~a~~~~~~~~~~~~~~~ 453 (482)
..++..++..+..+.....
T Consensus 151 ~~~~~~~~~~~~~~~~~~~ 169 (251)
T PF13440_consen 151 ILLAFIISALLALLISFYL 169 (251)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888888776655543
No 45
>COG4267 Predicted membrane protein [Function unknown]
Probab=97.48 E-value=0.088 Score=48.84 Aligned_cols=320 Identities=11% Similarity=0.072 Sum_probs=176.3
Q ss_pred HHHHHHHHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhh
Q 035514 81 FSFGLLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIP 160 (482)
Q Consensus 81 ~~~~~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~ 160 (482)
++..+..|++...++.+|...=++|++++..-......+....+..+.. ++-...++..... .. ..+.
T Consensus 72 fS~IiTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~-------~vf~~~~~~si~y---k~--l~~~ 139 (467)
T COG4267 72 FSQIITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGL-------IVFFVNNQYSIVY---KI--LACA 139 (467)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH-------HhhhhcCchhHHH---HH--HHHH
Confidence 3444677899999999999887777776644333333333222222221 1111122222211 11 1222
Q ss_pred hHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHHHHhhhccccc
Q 035514 161 QLFSLAISFPTQKFLQAQSKVSAFALIGFVALILHIVLLYVFIYAFGWGTAGAAIAYDISSWIISIAQVIYVIGWCKDGW 240 (482)
Q Consensus 161 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~l~~~li~~~~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~ 240 (482)
..+..+..=+...++.+.+|.+.....-.++.++.+.+..++-. .+..|..++..++..+.......+..|..+.+.
T Consensus 140 ~FV~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr~fk~~~ 216 (467)
T COG4267 140 LFVGMSLVWILMIFLSGLKKYKLIVLSFFIGYVVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILRYFKSSR 216 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHHhccccc
Confidence 23333444445567889999999999999898888888776654 588999999999999888877777665443322
Q ss_pred -CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHH------hHHHHHHHHHHHHHHHHHH-----
Q 035514 241 -HGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAV------GSLSICMNLNGWVIMLFVG----- 308 (482)
Q Consensus 241 -~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av------~~~~~~~~i~~~~~~~~~~----- 308 (482)
..++.- +.. +.-....+......+..++|+.+.=.-++++.-. ..|-+..-...+...|..+
T Consensus 217 ~i~FdFL--~~~----~~y~SLllIg~FY~lgiwid~FifW~~~~~~~Iag~~~~S~lYDvpiF~ayl~~iPs~vvF~i~ 290 (467)
T COG4267 217 RIGFDFL--LYR----RKYPSLLLIGFFYNLGIWIDNFIFWKVPTGIEIAGPFFASPLYDVPIFYAYLFIIPSMVVFLIS 290 (467)
T ss_pred ccceehh--hhh----hcchHHHHHHHHHHhHhhhhheeeEecCCCCEeecceecchhhhHHHHHHHHHhcchhheeeee
Confidence 222221 111 1112233444455566666655433333211111 1233333333333333332
Q ss_pred HHHHHHHHHHHhhc----C-------CChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHH
Q 035514 309 INAAISVRVSNELG----M-------GRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAF 377 (482)
Q Consensus 309 ~~~a~~~~~~~~~~----~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~ 377 (482)
+-+...+.--+.+. . ++.+......++.+.-..-+-...++.++++++.+...+.-++ ...+...
T Consensus 291 lET~F~~~Yk~~y~~I~~g~tl~~I~~~~~kMiltlrq~i~~~~~lQ~~a~l~~flL~~~Ll~~~~lS~----~~l~lF~ 366 (467)
T COG4267 291 LETDFQENYKEYYQAIRGGGTLREIENNLKKMILTLRQGILEIMELQMLASLLCFLLADALLLWFGLSE----YYLDLFY 366 (467)
T ss_pred eeehHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHH----HHHHHHH
Confidence 22222232222221 1 2234444455555555666667778889999999998886544 2445566
Q ss_pred HHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHh
Q 035514 378 LLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGY 426 (482)
Q Consensus 378 i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~ 426 (482)
+-.++...+........+..-..+-+..+..+..-. +.|-.+.++...
T Consensus 367 vd~lg~s~~i~f~~ll~i~lyfd~r~i~l~~t~~fl-i~N~ilT~i~l~ 414 (467)
T COG4267 367 VDVLGVSCQIVFMSLLNIFLYFDYRRIALELTALFL-ISNGILTFIFLE 414 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHH-HHhHHHHHHHHH
Confidence 666666666666666555555666666666655544 666666666543
No 46
>PF05975 EcsB: Bacterial ABC transporter protein EcsB; InterPro: IPR010288 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of several bacterial ABC transporter proteins which are homologous to the EcsB protein of Bacillus subtilis. EcsB is thought to encode a hydrophobic protein with six membrane-spanning helices in a pattern found in other hydrophobic components of ABC transporters [].
Probab=85.94 E-value=35 Score=33.12 Aligned_cols=39 Identities=13% Similarity=0.122 Sum_probs=32.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcC
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFT 363 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~ 363 (482)
+.++.+++.+++.+.+........++..+..-|+...-.
T Consensus 89 ~e~~~~~y~~~a~~yS~~~~~~~~~~~~~ll~Pl~~~~~ 127 (386)
T PF05975_consen 89 KESEMKQYFKRALRYSFVLQLLIQLLVFLLLLPLLMQVY 127 (386)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999998888888777777776333
No 47
>COG4267 Predicted membrane protein [Function unknown]
Probab=65.40 E-value=1.3e+02 Score=28.81 Aligned_cols=135 Identities=18% Similarity=0.110 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHH
Q 035514 305 LFVGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMV 384 (482)
Q Consensus 305 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~ 384 (482)
+..+++....-.+|+.+=+||.+++...+.-...++...+..++... .+.+++ .. ..+-...+...+
T Consensus 76 iTgg~q~iiTRfiSD~lF~k~~~kIlpsy~Gvi~lv~~~a~~ig~~v---------f~~~~~--~s--i~yk~l~~~~FV 142 (467)
T COG4267 76 ITGGFQLIITRFISDCLFEKKQRKILPSYIGVILLVTLVAGVIGLIV---------FFVNNQ--YS--IVYKILACALFV 142 (467)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHh---------hhhcCc--hh--HHHHHHHHHHHH
Confidence 44556777777777777777777777777666666665555544311 122222 11 112233444455
Q ss_pred HhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035514 385 LNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLLLIVLYR 456 (482)
Q Consensus 385 ~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~ 456 (482)
..+........+.+.+|.+.....-.++. .+.+.++.++-. .+..|..++..++..+...+......+
T Consensus 143 ~m~~~Wi~~iFlS~lK~y~~iv~sF~iG~-~~sv~La~~~~~---~~ie~lLL~~~IGi~~i~~l~~~~Ilr 210 (467)
T COG4267 143 GMSLVWILMIFLSGLKKYKLIVLSFFIGY-VVSVLLARLFLK---SPIEGLLLTLDIGIFIILFLLNFYILR 210 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHH---hHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 66667777788888999998877766666 777777776644 589999999999988766665555444
No 48
>PF11457 DUF3021: Protein of unknown function (DUF3021); InterPro: IPR021560 This is a bacterial family of uncharacterised proteins.
Probab=65.15 E-value=69 Score=25.54 Aligned_cols=19 Identities=11% Similarity=0.662 Sum_probs=12.3
Q ss_pred HHHHHHhChHHHHHHHHHH
Q 035514 451 LIVLYRTNWSREVEQATER 469 (482)
Q Consensus 451 ~~~~~~~~~~~~~~~~~~~ 469 (482)
.+......+|++.+|.+||
T Consensus 117 Iw~~~y~~~k~~i~kiN~k 135 (136)
T PF11457_consen 117 IWLIFYLYWKKDIKKINEK 135 (136)
T ss_pred HHHHHHHHHHHHHHHHHhh
Confidence 3445556677777777765
No 49
>PF04505 Dispanin: Interferon-induced transmembrane protein; InterPro: IPR007593 This family includes the human leukocyte antigen CD225, which is an interferon inducible transmembrane protein, and is associated with interferon induced cell growth suppression [].; GO: 0009607 response to biotic stimulus, 0016021 integral to membrane
Probab=63.64 E-value=49 Score=23.86 Aligned_cols=41 Identities=12% Similarity=0.015 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 035514 307 VGINAAISVRVSNELGMGRPRAAKYSVYVTVFQSLLIGLLF 347 (482)
Q Consensus 307 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (482)
.-++......+-+.+.++|++++++..+++.+++..-....
T Consensus 34 Gi~Ai~~s~kv~~~~~~Gd~~~A~~aS~~Ak~~~~ia~~~g 74 (82)
T PF04505_consen 34 GIVAIVYSSKVRSRYAAGDYEGARRASRKAKKWSIIAIIIG 74 (82)
T ss_pred HHHHheechhhHHHHHCCCHHHHHHHHHHhHHHHHHHHHHH
Confidence 33555556677788889999999999999888876544443
No 50
>PF01102 Glycophorin_A: Glycophorin A; InterPro: IPR001195 Proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Glycophorin A (PAS-2) and glycophorin B (PAS-3) belong to the MNS blood group system and are associated with antigens that include M/N, S/s, U, He, Mi(a), M(c), Vw, Mur, M(g), Vr, M(e), Mt(a), St(a), Ri(a), Cl(a), Ny(a), Hut, Hil, M(v), Far, Mit, Dantu, Hop, Nob, En(a), ENKT, amongst others. Glycophorin A is the major sialoglycoprotein of the erythrocyte membrane []. Structurally, glycophorin A consists of an N-terminal extracellular domain, heavily glycosylated on serine and threonine residues, followed by a transmembrane region and a C-terminal cytoplasmic domain. Other glycophorins in this entry such as Glycophorin B and Glycophorin E represent minor sialoglycoproteins in the erythrocyte membrane.; GO: 0016021 integral to membrane; PDB: 2KPF_B 1AFO_B 2KPE_A.
Probab=36.83 E-value=52 Score=25.81 Aligned_cols=27 Identities=22% Similarity=0.300 Sum_probs=9.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHhChH
Q 035514 434 GLWSGMICGTALQTLLLLIVLYRTNWS 460 (482)
Q Consensus 434 g~~~a~~~~~~~~~~~~~~~~~~~~~~ 460 (482)
|+.++..++-+...++..++++|++.|
T Consensus 68 ~Ii~gv~aGvIg~Illi~y~irR~~Kk 94 (122)
T PF01102_consen 68 GIIFGVMAGVIGIILLISYCIRRLRKK 94 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS--
T ss_pred ehhHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 333443443333333333444444333
No 51
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=33.95 E-value=1.2e+02 Score=18.92 Aligned_cols=11 Identities=18% Similarity=0.410 Sum_probs=4.8
Q ss_pred HhChHHHHHHH
Q 035514 456 RTNWSREVEQA 466 (482)
Q Consensus 456 ~~~~~~~~~~~ 466 (482)
+++.+++.++.
T Consensus 29 ~r~~~~~l~~~ 39 (46)
T PF04995_consen 29 RRRLRKELKRL 39 (46)
T ss_pred HHHHHHHHHHH
Confidence 34444444443
No 52
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=32.09 E-value=1.7e+02 Score=25.57 Aligned_cols=39 Identities=5% Similarity=0.057 Sum_probs=21.1
Q ss_pred CcchHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCC
Q 035514 105 HVHMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQ 143 (482)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 143 (482)
+++...+.+..++...+++-++.+++.....|+..+++.
T Consensus 142 ~y~k~~k~~~~gi~aml~Vf~LF~lvmt~g~d~m~fl~v 180 (230)
T PF03904_consen 142 KYQKRQKSMYKGIGAMLFVFMLFALVMTIGSDFMDFLHV 180 (230)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHhcccchhhhhH
Confidence 445555555555554444444444445566666666663
No 53
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=30.41 E-value=4.8e+02 Score=24.78 Aligned_cols=50 Identities=12% Similarity=0.147 Sum_probs=30.8
Q ss_pred cCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHH
Q 035514 240 WHGLTWAAFTDIWAFVRLSLASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNL 298 (482)
Q Consensus 240 ~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i 298 (482)
.+..++..+...+|.+|.++|..+..+ -+....+-.+++++ + .|++.+++
T Consensus 78 ~~~l~~~i~~~~~~~lk~~vPa~iYal----qNnl~yval~~lda---a--tyqVt~ql 127 (345)
T KOG2234|consen 78 LKSLSKEILAAPRETLKVSVPALIYAL----QNNLQYVALSNLDA---A--TYQVTYQL 127 (345)
T ss_pred hhhcCHHHHhChHHHHHHHHHHHHHHH----hhhHHHHHHhcCCc---h--hhhhhhhH
Confidence 344555556677899999999987543 33344444555542 3 56666655
No 54
>PTZ00370 STEVOR; Provisional
Probab=30.40 E-value=94 Score=28.30 Aligned_cols=34 Identities=26% Similarity=0.459 Sum_probs=15.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH-h--ChHHHHHH
Q 035514 432 VTGLWSGMICGTALQTLLLLIVLYR-T--NWSREVEQ 465 (482)
Q Consensus 432 ~~g~~~a~~~~~~~~~~~~~~~~~~-~--~~~~~~~~ 465 (482)
..|++.-.++.-.+..++.++|++| | .||++-.+
T Consensus 256 Pygiaalvllil~vvliilYiwlyrrRK~swkhe~kk 292 (296)
T PTZ00370 256 PYGIAALVLLILAVVLIILYIWLYRRRKNSWKHECKK 292 (296)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 3344333333333444444444444 3 58876554
No 55
>PF07672 MFS_Mycoplasma: Mycoplasma MFS transporter; InterPro: IPR011699 These proteins share some similarity with members of the Major Facilitator Superfamily (MFS).
Probab=29.20 E-value=3.6e+02 Score=24.52 Aligned_cols=22 Identities=5% Similarity=-0.237 Sum_probs=15.5
Q ss_pred hhhHHHHHHHHHhhHHHHHHHH
Q 035514 26 SVLRTETVKMWKIAGPVVFNLL 47 (482)
Q Consensus 26 ~~~~~~~~~~~~~~~p~~~~~~ 47 (482)
..+++.++-++-++..+.+.-.
T Consensus 91 LK~K~tw~w~~~Yg~wLv~~V~ 112 (267)
T PF07672_consen 91 LKEKETWKWILIYGIWLVVVVF 112 (267)
T ss_pred HccchHHHHHHHHHHHheeEEE
Confidence 4466778888888888765544
No 56
>PRK09757 PTS system N-acetylgalactosamine-specific transporter subunit IIC; Provisional
Probab=26.03 E-value=5.1e+02 Score=23.67 Aligned_cols=34 Identities=12% Similarity=0.088 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHH
Q 035514 302 VIMLFVGINAAISVRVSNELGMGRPRAAKYSVYV 335 (482)
Q Consensus 302 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 335 (482)
...+...+.....+..-++..++|++..++....
T Consensus 110 l~~~~~~~~~~~~~~adk~ae~gn~k~i~~~~~~ 143 (267)
T PRK09757 110 VILFFYSAFSLFMTKADKCAKEADTAAFSRLNWT 143 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHHH
Confidence 3344555666677777777788888888665443
No 57
>PRK09546 zntB zinc transporter; Reviewed
Probab=24.17 E-value=2.2e+02 Score=26.77 Aligned_cols=49 Identities=16% Similarity=0.203 Sum_probs=25.0
Q ss_pred HHHHHHHHHhHHHHHHHHHhccCCCc---------chhhHHHHHHHHHHHHHHHHHHHHhCh
Q 035514 407 YINIGSYYIFGLPLGYLLGYRAKLGV---------TGLWSGMICGTALQTLLLLIVLYRTNW 459 (482)
Q Consensus 407 ~~~~~~~~~~~i~~~~~l~~~~~~g~---------~g~~~a~~~~~~~~~~~~~~~~~~~~~ 459 (482)
..++++ .+.+|..++.+.+. ++. .|.++...+ .++.++..+++++|++|
T Consensus 266 ~Ltilt--~IflPlT~IaGiyG-MNf~~mPel~~~~gy~~~l~i-m~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 266 TMSLMA--MVFLPTTFLTGLFG-VNLGGIPGGGWPFGFSIFCLL-LVVLIGGVAWWLKRSKW 323 (324)
T ss_pred HHHHHH--HHHHHHHHHHhhhc-cccCCCCCcCCcchHHHHHHH-HHHHHHHHHHHHHhccc
Confidence 344444 34457777655431 111 244333333 34445556667888777
No 58
>PF14184 YrvL: Regulatory protein YrvL
Probab=23.41 E-value=3.9e+02 Score=21.37 Aligned_cols=102 Identities=18% Similarity=0.124 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHH-HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHH
Q 035514 115 RSWLILWVTCIFLLPIYLFSAPILKLLGQDDE-IAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFALIGFVALI 193 (482)
Q Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 193 (482)
..+...++..++.+...+....+++++|.+-+ ......-.+.....+.|+..+.......+.-.+-++... .....+
T Consensus 6 ~~i~~~l~~~~v~a~~ff~~~gif~L~Gi~Y~S~~~llLF~li~~~lg~~~e~~~k~l~~~l~~~~~~~~~~--~~l~~~ 83 (132)
T PF14184_consen 6 IFIIIALLLIIVFAIYFFVMVGIFHLLGIEYESVGSLLLFFLIIFVLGLPFELFEKVLLKALLFLRMSRRLF--ILLAFI 83 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCchHHH--HHHHHH
Confidence 33444444444444455666777788876533 233333334455567777777777766665553333322 234457
Q ss_pred HHHHHHHHHHHhcCCccchhHHHHH
Q 035514 194 LHIVLLYVFIYAFGWGTAGAAIAYD 218 (482)
Q Consensus 194 ~~i~l~~~li~~~~~g~~g~~~a~~ 218 (482)
+....++..++..+.=+.++.+.+.
T Consensus 84 id~~~t~~~i~~aD~~m~sI~is~~ 108 (132)
T PF14184_consen 84 IDFLFTWITIYTADELMESISISTL 108 (132)
T ss_pred HHHHHHHHHHHHHHHHhcceeeCcH
Confidence 7788888877765544444444333
No 59
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=22.90 E-value=4.5e+02 Score=22.24 Aligned_cols=25 Identities=36% Similarity=0.527 Sum_probs=16.1
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHh
Q 035514 209 GTAGAAIAYDISSWIISIAQVIYVI 233 (482)
Q Consensus 209 g~~g~~~a~~i~~~~~~~~~~~~~~ 233 (482)
++.|-..++.+...+..++...+..
T Consensus 135 ~~s~s~~~~ti~yIiL~iLf~~Ya~ 159 (189)
T PF05313_consen 135 SVSGSSGAYTISYIILAILFCIYAF 159 (189)
T ss_pred hhhHhHHHHHHHHHHHHHHHHHhee
Confidence 3345556677777777777666665
No 60
>TIGR00822 EII-Sor PTS system, mannose/fructose/sorbose family, IIC component. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains. The Man (PTS splinter group) family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of E. coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this family can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the sorbose-specific IIC subunits of this family of PTS transporters.
Probab=22.50 E-value=6e+02 Score=23.21 Aligned_cols=35 Identities=6% Similarity=-0.062 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHH
Q 035514 300 GWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVY 334 (482)
Q Consensus 300 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 334 (482)
+....+...+........-++..++|++.+++...
T Consensus 107 ~~l~~~~~~~~s~~~h~adk~ae~gn~k~i~~~~~ 141 (265)
T TIGR00822 107 QVLTIFVRTITVLFQHAADKAAKEANTAAISRLHV 141 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHhHHHHH
Confidence 33444555666677777777788888888865533
No 61
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=22.01 E-value=1.3e+02 Score=27.45 Aligned_cols=28 Identities=21% Similarity=0.238 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035514 214 AIAYDISSWIISIAQVIYVIGWCKDGWH 241 (482)
Q Consensus 214 ~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 241 (482)
+.-.++.-.+..++++++++||++..|+
T Consensus 264 aalvllil~vvliiLYiWlyrrRK~swk 291 (295)
T TIGR01478 264 AALVLIILTVVLIILYIWLYRRRKKSWK 291 (295)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 3333444555666666667766666664
No 62
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=21.80 E-value=1.1e+02 Score=27.96 Aligned_cols=31 Identities=26% Similarity=0.459 Sum_probs=14.0
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHH-h--ChHHH
Q 035514 432 VTGLWSGMICGTALQTLLLLIVLYR-T--NWSRE 462 (482)
Q Consensus 432 ~~g~~~a~~~~~~~~~~~~~~~~~~-~--~~~~~ 462 (482)
..|++.-.++.-.+..++.++|++| | .||++
T Consensus 260 Pcgiaalvllil~vvliiLYiWlyrrRK~swkhe 293 (295)
T TIGR01478 260 PYGIAALVLIILTVVLIILYIWLYRRRKKSWKHE 293 (295)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 3344433344434444444444444 3 57664
No 63
>TIGR03141 cytochro_ccmD heme exporter protein CcmD. The model for this protein family describes a small, hydrophobic, and only moderately well-conserved protein, tricky to identify accurately for all of these reasons. However, members are found as part of large operons involved in heme export across the inner membrane for assembly of c-type cytochromes in a large number of bacteria. The gray zone between the trusted cutoff (13.0) and noise cutoff (4.75) includes both low-scoring examples and false-positive matches to hydrophobic domains of longer proteins.
Probab=21.37 E-value=2.2e+02 Score=17.69 Aligned_cols=10 Identities=10% Similarity=0.232 Sum_probs=4.4
Q ss_pred hHHHHHHHHH
Q 035514 436 WSGMICGTAL 445 (482)
Q Consensus 436 ~~a~~~~~~~ 445 (482)
|.+..++.+.
T Consensus 9 W~sYg~t~l~ 18 (45)
T TIGR03141 9 WLAYGITALV 18 (45)
T ss_pred HHHHHHHHHH
Confidence 4444444333
No 64
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=20.69 E-value=5.7e+02 Score=25.66 Aligned_cols=83 Identities=17% Similarity=0.193 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHH--HHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHHHH
Q 035514 373 SKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSY--YIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTLLL 450 (482)
Q Consensus 373 ~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~--~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~~~ 450 (482)
...++-++.+..+-+...+.....=-.++.+.....+.... -++..|++=.+... .+|...+.+.....-++-.++.
T Consensus 134 ~R~lqGl~~g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s-~~GW~sifY~~g~~g~i~~~~w 212 (466)
T KOG2532|consen 134 LRFLQGLGQGVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCES-SLGWPSIFYVFGIVGLIWFILW 212 (466)
T ss_pred HHHHhHHHHhHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcc-CCCCchHHHHHHHHHHHHHHHH
Confidence 33444444555555555544444444455555544443332 14444444444322 4788998888888777766665
Q ss_pred HHHHHH
Q 035514 451 LIVLYR 456 (482)
Q Consensus 451 ~~~~~~ 456 (482)
.+.++.
T Consensus 213 ~~~~~d 218 (466)
T KOG2532|consen 213 FLFYSD 218 (466)
T ss_pred HHHhcC
Confidence 555544
No 65
>PF04235 DUF418: Protein of unknown function (DUF418); InterPro: IPR007349 Tihs is a probable integral membrane protein. It is usually found associated with (IPR007299 from INTERPRO).
Probab=20.18 E-value=4.9e+02 Score=21.34 Aligned_cols=28 Identities=18% Similarity=0.329 Sum_probs=19.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIIL 352 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (482)
+.++-++..++...+++.++++......
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 36 (163)
T PF04235_consen 9 RPEEHRKLLRRLLLIGLAVGLPLALLSA 36 (163)
T ss_pred ChhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566677777777777777777666555
Done!