Query 035514
Match_columns 482
No_of_seqs 264 out of 2061
Neff 10.6
Searched_HMMs 29240
Date Mon Mar 25 05:20:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035514.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035514hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3mkt_A Multi antimicrobial ext 100.0 9.6E-49 3.3E-53 389.5 35.8 428 27-457 6-446 (460)
2 3mkt_A Multi antimicrobial ext 99.8 2.2E-20 7.6E-25 185.1 18.8 207 27-234 232-445 (460)
3 1pw4_A Glycerol-3-phosphate tr 73.1 61 0.0021 30.3 38.3 21 430-450 410-430 (451)
4 3o7q_A L-fucose-proton symport 65.0 88 0.003 29.0 31.7 39 34-72 27-67 (438)
5 4aps_A DI-OR tripeptide H+ sym 56.1 1.4E+02 0.0047 28.3 30.6 46 402-448 421-466 (491)
6 4ev6_A Magnesium transport pro 23.9 1.3E+02 0.0046 27.1 6.2 54 403-459 277-338 (339)
7 2k1k_A Ephrin type-A receptor 21.8 96 0.0033 17.7 3.0 14 211-224 14-27 (38)
8 2knc_B Integrin beta-3; transm 10.9 4E+02 0.014 18.0 6.3 17 432-448 10-26 (79)
9 2iub_A CORA, divalent cation t 10.7 1.8E+02 0.0062 26.5 3.5 58 401-459 298-362 (363)
10 2jwa_A Receptor tyrosine-prote 10.5 3E+02 0.01 16.3 3.7 31 210-241 14-44 (44)
No 1
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=100.00 E-value=9.6e-49 Score=389.52 Aligned_cols=428 Identities=22% Similarity=0.391 Sum_probs=390.5
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
..++..|++++.++|.+++++...+.+.+|+.+++|+|++++|+++.+.++.... ..+..|++++..+.+++++|++|+
T Consensus 6 ~~~~~~k~~~~~~~p~~~~~~~~~~~~~v~~~~~~~lg~~~~~~~~~~~~i~~~~-~~~~~g~~~~~~~~is~~~g~~~~ 84 (460)
T 3mkt_A 6 RYKKEASNLIKLATPVLIASVAQTGMGFVDTIMAGGVSAIDMAAVSIAASIWLPS-ILFGVGLLMALVPVVAQLNGAGRQ 84 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTTTTSSHHHHHHHHHHHH-HHHHHHHHHHHGGGCTTTTSSSST
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCCh
Confidence 3457899999999999999999999999999999999999999999999997765 457889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPIYLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFAL 186 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 186 (482)
++.++.+++++.+..+.+++..+++.+.+|++.+++.+++..+.+..|+++.+++.++..+.....+.+|+.||++.++.
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 164 (460)
T 3mkt_A 85 HKIPFEVHQGLILALLVSVPIIAVLFQTQFIIRFMDVEEAMATKTVGYMHAVIFAVPAYLLFQALRSFTDGMSLTKPAMV 164 (460)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCSSTTHHHHHHHHHHTTGGGHHHHHHHHHHHTTTTCTTSCCTTTHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHH
Confidence 99999999999999999988776678889998888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh-c---CCccchhHHHHHHHHHHHHHHHHHHHhhhcccc----cCCCCHHHHHHHHHHHHHH
Q 035514 187 IGFVALILHIVLLYVFIYA-F---GWGTAGAAIAYDISSWIISIAQVIYVIGWCKDG----WHGLTWAAFTDIWAFVRLS 258 (482)
Q Consensus 187 ~~~~~~~~~i~l~~~li~~-~---~~g~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~ 258 (482)
.++++.++|++++++++.. + ++|+.|+++++.+++.+..++..++++|+.+.. +++..+.+++..|++++++
T Consensus 165 ~~~~~~~~~i~l~~~li~~~~~~p~~g~~g~a~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 244 (460)
T 3mkt_A 165 IGFIGLLLNIPLNWIFVYGKFGAPELGGVGCGVATAIVYWIMLLLLLFYIVTSKRLAHVKVFETFHKPQPKELIRLFRLG 244 (460)
T ss_dssp HHHHHHHHHHHHHHHHHSCCTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCCCSCCCCSSTTSSTTTSHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHHHHHHHHHHHHhCcchhhhhhhhcccccCHHHHHHHHHHh
Confidence 9999999999999999975 3 699999999999999999998887776432211 1222223346789999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 035514 259 LASAVMLCLEIWYMTSIIILTGHLDNAIIAVGSLSICMNLNGWVIMLFVGINAAISVRVSNELGMGRPRAAKYSVYVTVF 338 (482)
Q Consensus 259 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (482)
+|..++++.......+++.+++++|++ ++++|+++.++.++..++..+++++..|.+++++|++|.+++++..+++.+
T Consensus 245 ~p~~~~~~~~~~~~~~~~~~~~~~g~~--~va~~~i~~~i~~~~~~~~~~~~~a~~p~i~~~~g~~~~~~~~~~~~~~~~ 322 (460)
T 3mkt_A 245 FPVAAALFFEVTLFAVVALLVAPLGST--VVAAHQVALNFSSLVFMFPMSIGAAVSIRVGHKLGEQDTKGAAIAANVGLM 322 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCTTSSH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCCTTTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHcChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999754 567999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhhcCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhcCcchhHHHHHHHHHHHhHH
Q 035514 339 QSLLIGLLFMIIILLTKDYFAIIFTSSKELQRAASKIAFLLGITMVLNSVQPVLSGVAIGGGWQALVAYINIGSYYIFGL 418 (482)
Q Consensus 339 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 418 (482)
+...++++.++++.++++++.++|++|+++.+.+.+++++++++.++++++....+++++.||+|.+++.++++.|++++
T Consensus 323 ~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~i 402 (460)
T 3mkt_A 323 TGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIFHRTFISYWVLGL 402 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888889999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc----cC-CCcchhhHHHHHHHHHHHHHHHHHHHHh
Q 035514 419 PLGYLLGYR----AK-LGVTGLWSGMICGTALQTLLLLIVLYRT 457 (482)
Q Consensus 419 ~~~~~l~~~----~~-~g~~g~~~a~~~~~~~~~~~~~~~~~~~ 457 (482)
|+++++.+. ++ +|+.|+|+++.+++.+..++..++++|.
T Consensus 403 ~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~~ 446 (460)
T 3mkt_A 403 PTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYWL 446 (460)
T ss_dssp HHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999887 66 8999999999999999888776665553
No 2
>3mkt_A Multi antimicrobial extrusion protein (Na(+)/drug antiporter) MATE-like MDR efflux...; multidrug transporter, cation-bound, transport protein; 3.65A {Vibrio cholerae} PDB: 3mku_A
Probab=99.85 E-value=2.2e-20 Score=185.07 Aligned_cols=207 Identities=13% Similarity=0.154 Sum_probs=190.9
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCCCc
Q 035514 27 VLRTETVKMWKIAGPVVFNLLCLYGTNSFTNIFVGHIGEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAGHV 106 (482)
Q Consensus 27 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~~~ 106 (482)
.+++..|++++.++|.+++++...+...+|+.+++++|++++|+++++.++.++.. .+..+++++..|.+++.+|++|+
T Consensus 232 ~~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~~~~~~~g~~~va~~~i~~~i~~~~~-~~~~~~~~a~~p~i~~~~g~~~~ 310 (460)
T 3mkt_A 232 PQPKELIRLFRLGFPVAAALFFEVTLFAVVALLVAPLGSTVVAAHQVALNFSSLVF-MFPMSIGAAVSIRVGHKLGEQDT 310 (460)
T ss_dssp STTSSTTTSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSSHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSCC
T ss_pred cCHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCCH
Confidence 44567889999999999999999999999999999999999999999999999774 68889999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHH-HHhhHHHHHHcCCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhcCCchhHH
Q 035514 107 HMLGVYMQRSWLILWVTCIFLLPI-YLFSAPILKLLGQDDEIAKLAGKFTILTIPQLFSLAISFPTQKFLQAQSKVSAFA 185 (482)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 185 (482)
++.++..+.+......++++..++ ..+.+++..++..|++..+.+..++++.+++.++..+..+..+.+++.||++.++
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~ 390 (460)
T 3mkt_A 311 KGAAIAANVGLMTGLATACITALLTVLFREQIALLYTENQVVVALAMQLLLFAAIYQCMDAVQVVAAGSLRGYKDMTAIF 390 (460)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSTHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 999999999999999999988866 8889999999888888888999999999999999999999999999999999999
Q ss_pred HHHHHHH-HHHHHHHHHHHHh----cC-CccchhHHHHHHHHHHHHHHHHHHHhh
Q 035514 186 LIGFVAL-ILHIVLLYVFIYA----FG-WGTAGAAIAYDISSWIISIAQVIYVIG 234 (482)
Q Consensus 186 ~~~~~~~-~~~i~l~~~li~~----~~-~g~~g~~~a~~i~~~~~~~~~~~~~~~ 234 (482)
..++++. ++++++++++... .+ +|+.|+++++.+++.+..++..+.++|
T Consensus 391 ~~~~~~~~~~~i~l~~~l~~~~~~~~~~~G~~G~~~a~~~~~~~~~~~~~~~~~~ 445 (460)
T 3mkt_A 391 HRTFISYWVLGLPTGYILGMTNWLTEQPLGAKGFWLGFIIGLSAAALMLGQRLYW 445 (460)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSSCCSSHHHHHHHHHHHHHHHHHHHHHSSSSS
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhccccccCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999998 9999999999986 66 899999999999999998877666654
No 3
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=73.12 E-value=61 Score=30.27 Aligned_cols=21 Identities=38% Similarity=0.561 Sum_probs=10.9
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 035514 430 LGVTGLWSGMICGTALQTLLL 450 (482)
Q Consensus 430 ~g~~g~~~a~~~~~~~~~~~~ 450 (482)
.|....++...+..++..++.
T Consensus 410 ~g~~~~~~~~~~~~~~~~~~~ 430 (451)
T 1pw4_A 410 FGWDGGFMVMIGGSILAVILL 430 (451)
T ss_dssp SCSHHHHHHHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHHHHHHHH
Confidence 566666555555544444333
No 4
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=65.03 E-value=88 Score=28.98 Aligned_cols=39 Identities=3% Similarity=-0.085 Sum_probs=18.6
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHhhhc--ChHHHHHHH
Q 035514 34 KMWKIAGPVVFNLLCLYGTNSFTNIFVGHI--GEIELSSAA 72 (482)
Q Consensus 34 ~~~~~~~p~~~~~~~~~~~~~~~~~~i~~~--g~~~~~~~~ 72 (482)
.+.....-.++..+...........+..++ ++.+.+...
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~ 67 (438)
T 3o7q_A 27 PFALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQ 67 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHH
Confidence 333344444444444445555555566666 444544443
No 5
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=56.12 E-value=1.4e+02 Score=28.28 Aligned_cols=46 Identities=9% Similarity=0.010 Sum_probs=18.3
Q ss_pred chhHHHHHHHHHHHhHHHHHHHHHhccCCCcchhhHHHHHHHHHHHH
Q 035514 402 QALVAYINIGSYYIFGLPLGYLLGYRAKLGVTGLWSGMICGTALQTL 448 (482)
Q Consensus 402 ~~~~~~~~~~~~~~~~i~~~~~l~~~~~~g~~g~~~a~~~~~~~~~~ 448 (482)
.+.....+.... +-......+.....+.+....+........+..+
T Consensus 421 g~~~g~~~~~~~-~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 466 (491)
T 4aps_A 421 SQMMSMWFLSSS-VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGI 466 (491)
T ss_dssp SSSTHHHHHHHH-HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 333333333333 3333333333333334544444444444444333
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=23.89 E-value=1.3e+02 Score=27.13 Aligned_cols=54 Identities=11% Similarity=0.310 Sum_probs=28.8
Q ss_pred hhHHHHHHHHHHHhHHHHHHHHHhcc-------CCC-cchhhHHHHHHHHHHHHHHHHHHHHhCh
Q 035514 403 ALVAYINIGSYYIFGLPLGYLLGYRA-------KLG-VTGLWSGMICGTALQTLLLLIVLYRTNW 459 (482)
Q Consensus 403 ~~~~~~~~~~~~~~~i~~~~~l~~~~-------~~g-~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 459 (482)
+..-..++++ .+.+|..++.+.+. ..+ -.|.|++..+ .++.+++.+++++|++|
T Consensus 277 ~~mk~LTiit--~IflP~T~IaGiyGMNf~~mPel~~~~gy~~~l~~-m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVT--TIFAVPMWITGIYGMNFSYLPLANNPQGFWLVMAL-MVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHH--HHSSHHHHHHHHTTCCCSCCTTSSCTTHHHHHHHH-HHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHH--HHHHHHHHHHhhccCcCCCCCCccCchHHHHHHHH-HHHHHHHHHHHHHHcCC
Confidence 3334445444 45567776665432 111 2344544444 45556666777888887
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=21.82 E-value=96 Score=17.71 Aligned_cols=14 Identities=0% Similarity=0.090 Sum_probs=5.8
Q ss_pred chhHHHHHHHHHHH
Q 035514 211 AGAAIAYDISSWII 224 (482)
Q Consensus 211 ~g~~~a~~i~~~~~ 224 (482)
.|..++.+.+-.+.
T Consensus 14 AGiVvG~v~gv~li 27 (38)
T 2k1k_A 14 VAVIFGLLLGAALL 27 (38)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHH
Confidence 34444444443333
No 8
>2knc_B Integrin beta-3; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=10.85 E-value=4e+02 Score=18.03 Aligned_cols=17 Identities=12% Similarity=0.075 Sum_probs=6.8
Q ss_pred cchhhHHHHHHHHHHHH
Q 035514 432 VTGLWSGMICGTALQTL 448 (482)
Q Consensus 432 ~~g~~~a~~~~~~~~~~ 448 (482)
+.++..+...+-++..+
T Consensus 10 ~~~Iv~gvi~gilliGl 26 (79)
T 2knc_B 10 ILVVLLSVMGAILLIGL 26 (79)
T ss_dssp SHHHHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHH
Confidence 33444444444333333
No 9
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=10.68 E-value=1.8e+02 Score=26.54 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHhHHHHHHH-------HHhccCCCcchhhHHHHHHHHHHHHHHHHHHHHhCh
Q 035514 401 WQALVAYINIGSYYIFGLPLGYL-------LGYRAKLGVTGLWSGMICGTALQTLLLLIVLYRTNW 459 (482)
Q Consensus 401 ~~~~~~~~~~~~~~~~~i~~~~~-------l~~~~~~g~~g~~~a~~~~~~~~~~~~~~~~~~~~~ 459 (482)
+....++.-.+-+ .+.+|..++ +...|+....-.++......++.++..+++++|++|
T Consensus 298 ~~N~imk~LTiit-~IflP~T~IaGiyGMNf~~mPel~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 298 KTNEVMKVLTIIA-TIFMPLTFIAGIYGMNFEYMPELRWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHH-HHHHHHHHHTTSCC--------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHhhhcccCCCCCcccCcHHHHHHHHHHHHHHHHHHHHHHHccc
No 10
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=10.53 E-value=3e+02 Score=16.32 Aligned_cols=31 Identities=6% Similarity=-0.013 Sum_probs=0.0
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhhcccccC
Q 035514 210 TAGAAIAYDISSWIISIAQVIYVIGWCKDGWH 241 (482)
Q Consensus 210 ~~g~~~a~~i~~~~~~~~~~~~~~~~~~~~~~ 241 (482)
+.+.+.+ ++..++..+...++++|+...+.+
T Consensus 14 Ia~~vVG-vll~vi~~l~~~~~~RRR~~~~kK 44 (44)
T 2jwa_A 14 IISAVVG-ILLVVVLGVVFGILIKRRQQKIRK 44 (44)
T ss_dssp HHHHHHH-HHHHHHHHHHHHHHHHHHCSCCCC
T ss_pred hHHHHHH-HHHHHHHHHHHHhheehhhhhccC
Done!