Query 035514
Match_columns 482
No_of_seqs 264 out of 2061
Neff 10.6
Searched_HMMs 13730
Date Mon Mar 25 05:20:15 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035514.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035514hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1pw4a_ f.38.1.1 (A:) Glycerol 43.6 92 0.0067 26.4 38.2 23 430-452 407-429 (447)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 25.8 1.8E+02 0.013 24.4 19.5 25 208-232 407-431 (447)
3 d1nkzb_ f.3.1.1 (B:) Light-har 9.8 1.4E+02 0.01 15.8 4.2 34 325-358 7-40 (41)
4 d1lghb_ f.3.1.1 (B:) Light-har 8.3 1.1E+02 0.0081 16.6 2.0 32 325-356 10-41 (43)
5 d2yvxa3 f.57.1.1 (A:276-448) M 6.3 4.6E+02 0.034 19.0 6.5 45 85-129 53-97 (173)
6 d1pv7a_ f.38.1.2 (A:) Lactose 5.8 6.1E+02 0.044 19.9 35.2 64 33-104 7-73 (417)
7 d2iuba2 f.17.3.1 (A:286-349) M 5.5 3E+02 0.022 15.9 3.5 10 415-424 14-23 (64)
8 d1ijdb_ f.3.1.1 (B:) Light-har 4.4 2.9E+02 0.021 14.4 4.0 31 325-355 8-38 (40)
9 d1q90b_ f.21.1.2 (B:) Cytochro 3.7 7.3E+02 0.053 18.5 5.3 26 377-402 115-140 (212)
10 d1jo5a_ f.3.1.1 (A:) Light-har 3.6 1.9E+02 0.013 16.1 1.1 33 325-357 15-47 (48)
No 1
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=43.64 E-value=92 Score=26.44 Aligned_cols=23 Identities=35% Similarity=0.598 Sum_probs=13.0
Q ss_pred CCcchhhHHHHHHHHHHHHHHHH
Q 035514 430 LGVTGLWSGMICGTALQTLLLLI 452 (482)
Q Consensus 430 ~g~~g~~~a~~~~~~~~~~~~~~ 452 (482)
+|..+..+.......+..++...
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~ 429 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIV 429 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHH
Confidence 67666666655555555444443
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=25.77 E-value=1.8e+02 Score=24.36 Aligned_cols=25 Identities=16% Similarity=0.202 Sum_probs=11.8
Q ss_pred CccchhHHHHHHHHHHHHHHHHHHH
Q 035514 208 WGTAGAAIAYDISSWIISIAQVIYV 232 (482)
Q Consensus 208 ~g~~g~~~a~~i~~~~~~~~~~~~~ 232 (482)
.|..+..+.......+..++.....
T Consensus 407 ~g~~~~~~~~~~~~~~~~~~~~~~~ 431 (447)
T d1pw4a_ 407 FGWDGGFMVMIGGSILAVILLIVVM 431 (447)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hChHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555554444444444444444333
No 3
>d1nkzb_ f.3.1.1 (B:) Light-harvesting complex subunits {Purple bacterium (Rhodoblastus acidophilus) [TaxId: 1074]}
Probab=9.84 E-value=1.4e+02 Score=15.78 Aligned_cols=34 Identities=9% Similarity=0.032 Sum_probs=25.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhh
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDYF 358 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i 358 (482)
+-|+..+....+.+....+++..=++.+...||+
T Consensus 7 eaEElHk~vIdGtRvF~~iA~~AH~La~~~tPWL 40 (41)
T d1nkzb_ 7 QSEELHKYVIDGTRVFLGLALVAHFLAFSATPWL 40 (41)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSTT
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHHHHHHhCccc
Confidence 4577888888899988888887777666665553
No 4
>d1lghb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodospirillum molischianum [TaxId: 1083]}
Probab=8.29 E-value=1.1e+02 Score=16.63 Aligned_cols=32 Identities=9% Similarity=0.092 Sum_probs=18.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIILLTKD 356 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 356 (482)
+-++..+.+..++.....+++..=++.....|
T Consensus 10 EA~EfH~~~~~g~~~F~~iAvvAHiLvw~wrP 41 (43)
T d1lghb_ 10 EAIAVHDQFKTTFSAFIILAAVAHVLVWVWKP 41 (43)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677777776666666655555444443
No 5
>d2yvxa3 f.57.1.1 (A:276-448) Mg2+ transporter MgtE {Thermus thermophilus [TaxId: 274]}
Probab=6.33 E-value=4.6e+02 Score=18.96 Aligned_cols=45 Identities=11% Similarity=-0.172 Sum_probs=23.0
Q ss_pred HHHHHHHhHHHHHHhhhCCCCcchHHHHHHHHHHHHHHHHHHHHH
Q 035514 85 LLLGMGSALETLCGQAFGAGHVHMLGVYMQRSWLILWVTCIFLLP 129 (482)
Q Consensus 85 ~~~g~~~~~~~~~s~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (482)
-..|-.+.....=+-+.|+-++++..+.+.+=+..+++.+..+.+
T Consensus 53 GN~G~Qs~ti~iR~La~g~i~~~~~~~~l~kE~~vgll~G~~l~~ 97 (173)
T d2yvxa3 53 GNTGNQSATLIIRALATRDLDLRDWRRVFLKEMGVGLLLGLTLSF 97 (173)
T ss_dssp HHHHHHHHHHHHHHHHTTCSCSSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 333444443222223333435566667776666666666665553
No 6
>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}
Probab=5.82 E-value=6.1e+02 Score=19.85 Aligned_cols=64 Identities=13% Similarity=0.156 Sum_probs=30.1
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHhh-hc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhCCC
Q 035514 33 VKMWKIAGPVVFNLLCLYGTNSFTNIFVG-HI--GEIELSSAAISLSVIGTFSFGLLLGMGSALETLCGQAFGAG 104 (482)
Q Consensus 33 ~~~~~~~~p~~~~~~~~~~~~~~~~~~i~-~~--g~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~s~~~g~~ 104 (482)
|+.+.++.-.++..+...........++. .+ ++.++|.......+... +..-..-.+++.+|++
T Consensus 7 ~~~~~l~~~~f~~~~~~~~~~~~l~~~l~~~~g~s~~~~g~i~s~~~l~~~--------i~~~~~G~l~Dr~grr 73 (417)
T d1pv7a_ 7 TNFWMFGLFFFFYFFIMGAYFPFFPIWLHDINHISKSDTGIIFAAISLFSL--------LFQPLFGLLSDKLGLR 73 (417)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--------HTHHHHHHHHHHHTTC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHhCch
Confidence 44555555555555554444433333333 33 45555555433333322 2222233667777754
No 7
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=5.50 E-value=3e+02 Score=15.90 Aligned_cols=10 Identities=20% Similarity=0.507 Sum_probs=4.7
Q ss_pred HhHHHHHHHH
Q 035514 415 IFGLPLGYLL 424 (482)
Q Consensus 415 ~~~i~~~~~l 424 (482)
.+.+|..++-
T Consensus 14 ~iflP~t~i~ 23 (64)
T d2iuba2 14 TIFMPLTFIA 23 (64)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
Confidence 3444555543
No 8
>d1ijdb_ f.3.1.1 (B:) Light-harvesting complex subunits {Rhodoblastus acidophilus [TaxId: 1074]}
Probab=4.44 E-value=2.9e+02 Score=14.38 Aligned_cols=31 Identities=10% Similarity=0.016 Sum_probs=21.8
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIILLTK 355 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 355 (482)
+-++..+....+.+....+++..=++.+...
T Consensus 8 eaEElHk~vIdGtRvF~~iA~~AH~La~~~t 38 (40)
T d1ijdb_ 8 QAEELHKHVIDGTRVFLVIAAIAHFLAFTLT 38 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHHHHhcC
Confidence 4577888888888888887776655554443
No 9
>d1q90b_ f.21.1.2 (B:) Cytochrome b6 subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=3.71 E-value=7.3e+02 Score=18.51 Aligned_cols=26 Identities=15% Similarity=0.240 Sum_probs=12.5
Q ss_pred HHHHHHHHHhhHHHHHHHHHhhcCcc
Q 035514 377 FLLGITMVLNSVQPVLSGVAIGGGWQ 402 (482)
Q Consensus 377 ~i~~~~~~~~~~~~~~~~~l~~~g~~ 402 (482)
++......+......+.++.---++.
T Consensus 115 W~~Gv~l~~l~m~~aftGY~Lpw~q~ 140 (212)
T d1q90b_ 115 WVTGVIMAVCTVSFGVTGYSLPWDQV 140 (212)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCBHH
T ss_pred ehHhHHHHHHHHHHHHhhhhcchhhH
Confidence 44444444444555555555544443
No 10
>d1jo5a_ f.3.1.1 (A:) Light-harvesting complex subunits {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=3.61 E-value=1.9e+02 Score=16.12 Aligned_cols=33 Identities=0% Similarity=0.095 Sum_probs=19.2
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035514 325 RPRAAKYSVYVTVFQSLLIGLLFMIIILLTKDY 357 (482)
Q Consensus 325 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 357 (482)
+-++..+.+..++.....+++..=++.....|+
T Consensus 15 EA~E~H~~~~~g~~~F~~iAvvAH~L~w~wrPW 47 (48)
T d1jo5a_ 15 QAQELHSVYMSGLWLFSAVAIVAHLAVYIWRPW 47 (48)
T ss_dssp HHHHHHHHHHHTTTHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 345666667666666666666555555544443
Done!