BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035516
         (167 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1D4O|A Chain A, Crystal Structure Of Transhydrogenase Domain Iii At 1.2
          Angstroms Resolution
          Length = 184

 Score = 28.9 bits (63), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 3  AGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFP 38
          AG+   +        G+P DIV+E+DE++   H FP
Sbjct: 64 AGRMPGQLNVLLAEAGVPYDIVLEMDEIN---HDFP 96


>pdb|1DJL|A Chain A, The Crystal Structure Of Human Transhydrogenase Domain Iii
           With Bound Nadp
 pdb|1DJL|B Chain B, The Crystal Structure Of Human Transhydrogenase Domain Iii
           With Bound Nadp
 pdb|1PT9|A Chain A, Crystal Structure Analysis Of The Diii Component Of
           Transhydrogenase With A Thio-Nicotinamide Nucleotide
           Analogue
 pdb|1PT9|B Chain B, Crystal Structure Analysis Of The Diii Component Of
           Transhydrogenase With A Thio-Nicotinamide Nucleotide
           Analogue
 pdb|1U31|A Chain A, Recombinant Human Heart Transhydrogenase Diii Bound With
           Nadph
 pdb|1U31|B Chain B, Recombinant Human Heart Transhydrogenase Diii Bound With
           Nadph
          Length = 207

 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 3/36 (8%)

Query: 3   AGKPTSKGQAWFCTTGLPSDIVIEVDEMSFHLHKFP 38
           AG+   +        G+P DIV+E+DE++   H FP
Sbjct: 87  AGRMPGQLNVLLAEAGVPYDIVLEMDEIN---HDFP 119


>pdb|1VRD|A Chain A, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
 pdb|1VRD|B Chain B, Crystal Structure Of Inosine-5'-Monophosphate
           Dehydrogenase (Tm1347) From Thermotoga Maritima At 2.18
           A Resolution
          Length = 494

 Score = 27.3 bits (59), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 3/35 (8%)

Query: 20  PSDIVIEVDEMSFHLH---KFPLMSKSRKLHQLIT 51
           P DI +E  +   H H   K PL+SK  KL  LIT
Sbjct: 171 PPDISLEKAKEILHQHRIEKLPLVSKDNKLVGLIT 205


>pdb|3M8V|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
          FORM II
 pdb|3M4T|A Chain A, Crystal Structure Of The Btb Domain From KaisoZBTB33,
          FORM I
          Length = 124

 Score = 26.6 bits (57), Expect = 7.7,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 9  KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLIT 51
          +G   FC      D+ + V++  F  HK  L + S   HQL +
Sbjct: 28 RGHGLFC------DVTVIVEDRKFRAHKNILSASSTYFHQLFS 64


>pdb|3FKC|A Chain A, Crystal Structure Of Human Zinc Finger And Btb Domain
          Containing 33
          Length = 116

 Score = 26.2 bits (56), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 13/43 (30%), Positives = 20/43 (46%), Gaps = 6/43 (13%)

Query: 9  KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLIT 51
          +G   FC      D+ + V++  F  HK  L + S   HQL +
Sbjct: 26 RGHGLFC------DVTVIVEDRKFRAHKNILSASSTYFHQLFS 62


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.317    0.130    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,311,162
Number of Sequences: 62578
Number of extensions: 138811
Number of successful extensions: 249
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 247
Number of HSP's gapped (non-prelim): 5
length of query: 167
length of database: 14,973,337
effective HSP length: 92
effective length of query: 75
effective length of database: 9,216,161
effective search space: 691212075
effective search space used: 691212075
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 48 (23.1 bits)