Query 035516
Match_columns 167
No_of_seqs 114 out of 1055
Neff 5.3
Searched_HMMs 46136
Date Fri Mar 29 03:37:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035516.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035516hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PHA02790 Kelch-like protein; P 99.9 3.7E-27 8E-32 212.6 9.5 120 11-165 13-134 (480)
2 KOG4441 Proteins containing BT 99.9 1.8E-26 3.9E-31 213.4 9.4 123 9-164 25-147 (571)
3 PHA02713 hypothetical protein; 99.9 3.1E-26 6.6E-31 210.6 8.4 120 9-162 14-134 (557)
4 PHA03098 kelch-like protein; P 99.9 2.6E-23 5.5E-28 187.4 9.9 111 17-164 6-118 (534)
5 PF00651 BTB: BTB/POZ domain; 99.9 4.7E-22 1E-26 143.3 9.5 106 12-148 2-110 (111)
6 smart00225 BTB Broad-Complex, 99.8 3.5E-19 7.6E-24 120.7 6.0 90 22-142 1-90 (90)
7 KOG4350 Uncharacterized conser 99.5 2.4E-14 5.2E-19 129.1 5.8 81 8-113 32-112 (620)
8 KOG2075 Topoisomerase TOP1-int 99.4 1.4E-12 3E-17 118.9 7.2 124 9-165 103-231 (521)
9 KOG4591 Uncharacterized conser 99.0 7E-10 1.5E-14 92.9 5.1 119 12-166 58-181 (280)
10 KOG4682 Uncharacterized conser 98.9 3.1E-09 6.6E-14 95.9 7.6 117 13-159 62-178 (488)
11 KOG0783 Uncharacterized conser 98.6 4.5E-08 9.8E-13 94.7 4.1 109 18-160 710-824 (1267)
12 KOG0783 Uncharacterized conser 98.5 1.5E-07 3.4E-12 91.1 6.7 75 17-108 555-633 (1267)
13 PF11822 DUF3342: Domain of un 98.1 3E-06 6.5E-11 74.5 5.2 92 29-149 13-104 (317)
14 PF02214 BTB_2: BTB/POZ domain 97.6 5E-05 1.1E-09 54.2 2.7 89 23-141 1-94 (94)
15 smart00512 Skp1 Found in Skp1 97.5 0.00013 2.9E-09 53.4 4.2 81 23-128 4-104 (104)
16 KOG2716 Polymerase delta-inter 97.5 0.00049 1.1E-08 58.3 8.2 112 23-164 7-126 (230)
17 KOG2838 Uncharacterized conser 97.1 0.00037 7.9E-09 61.3 3.2 88 17-127 127-217 (401)
18 PF03931 Skp1_POZ: Skp1 family 96.8 0.007 1.5E-07 40.7 6.9 56 23-106 3-59 (62)
19 KOG1724 SCF ubiquitin ligase, 96.8 0.0019 4.1E-08 52.1 4.6 93 27-151 12-129 (162)
20 KOG2838 Uncharacterized conser 96.6 0.00054 1.2E-08 60.2 -0.1 67 31-112 262-329 (401)
21 KOG3473 RNA polymerase II tran 96.3 0.012 2.6E-07 44.5 5.6 87 18-128 13-112 (112)
22 KOG0511 Ankyrin repeat protein 94.7 0.024 5.3E-07 51.8 3.0 85 23-130 295-379 (516)
23 KOG2714 SETA binding protein S 94.5 0.099 2.2E-06 48.2 6.4 84 23-130 13-99 (465)
24 KOG0511 Ankyrin repeat protein 92.8 0.03 6.5E-07 51.3 -0.0 97 6-130 133-233 (516)
25 KOG2715 Uncharacterized conser 91.5 1.8 3.9E-05 35.9 8.8 101 21-149 21-122 (210)
26 COG5201 SKP1 SCF ubiquitin lig 90.9 0.64 1.4E-05 36.9 5.4 94 23-150 4-123 (158)
27 PF01466 Skp1: Skp1 family, di 90.4 0.11 2.4E-06 36.4 0.7 34 111-150 11-44 (78)
28 KOG3840 Uncharaterized conserv 90.0 2.1 4.5E-05 38.6 8.5 115 15-150 90-221 (438)
29 KOG1987 Speckle-type POZ prote 86.8 0.34 7.4E-06 40.8 1.4 98 21-149 99-201 (297)
30 KOG1665 AFH1-interacting prote 86.3 3.3 7.2E-05 35.9 7.1 92 23-143 11-105 (302)
31 PF10905 DUF2695: Protein of u 61.6 5.1 0.00011 26.8 1.4 23 5-27 30-52 (53)
32 KOG3863 bZIP transcription fac 56.8 2.5 5.4E-05 40.6 -1.0 38 11-53 5-42 (604)
33 PF09593 Pathogen_betaC1: Beta 56.7 16 0.00035 28.1 3.6 77 28-129 20-96 (117)
34 KOG2723 Uncharacterized conser 50.6 55 0.0012 27.8 6.1 84 23-130 11-97 (221)
35 KOG3713 Voltage-gated K+ chann 43.2 71 0.0015 30.1 6.1 103 20-145 30-136 (477)
36 TIGR01121 D_amino_aminoT D-ami 25.1 48 0.001 27.9 1.8 58 89-148 22-79 (276)
37 PHA03098 kelch-like protein; P 24.9 47 0.001 30.2 1.9 46 95-149 92-137 (534)
38 PF01848 HOK_GEF: Hok/gef fami 24.3 1.1E+02 0.0023 19.5 2.9 20 16-35 21-40 (43)
39 PF07707 BACK: BTB And C-termi 22.6 63 0.0014 22.1 1.8 26 118-149 3-28 (103)
40 PF09774 Cid2: Caffeine-induce 22.3 76 0.0016 25.0 2.4 30 137-166 41-70 (151)
No 1
>PHA02790 Kelch-like protein; Provisional
Probab=99.94 E-value=3.7e-27 Score=212.59 Aligned_cols=120 Identities=13% Similarity=0.072 Sum_probs=104.0
Q ss_pred hhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEe--CC
Q 035516 11 QAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISI--PE 88 (167)
Q Consensus 11 ~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L--~~ 88 (167)
.--+|.+|.+|||++.+ |++|+|||+|||++|+|||+||++++.++ . .+|.+ .
T Consensus 13 ~~~~~~~~~~~~~~~~~-~~~~~~HR~VLAa~S~YFraMF~~~~~Es----------------------~-~~v~~~~~- 67 (480)
T PHA02790 13 ILALSMTKKFKTIIEAI-GGNIIVNSTILKKLSPYFRTHLRQKYTKN----------------------K-DPVTRVCL- 67 (480)
T ss_pred HHHHHhhhhhceEEEEc-CcEEeeehhhhhhcCHHHHHHhcCCcccc----------------------c-cceEEEec-
Confidence 34589999999976655 56999999999999999999999988651 1 12333 4
Q ss_pred CCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhhhh
Q 035516 89 DFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCEN 165 (167)
Q Consensus 89 ~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~~~ 165 (167)
+++ +++|+.||+|+|||++.|+.+||++|+.||.+|||+. |++.|++||.+++ +.+||+.+++.++.
T Consensus 68 ~v~--~~~l~~lldy~YTg~l~it~~nV~~ll~aA~~Lqi~~------v~~~C~~fL~~~l--~~~NCl~i~~~A~~ 134 (480)
T PHA02790 68 DLD--IHSLTSIVIYSYTGKVYIDSHNVVNLLRASILTSVEF------IIYTCINFILRDF--RKEYCVECYMMGIE 134 (480)
T ss_pred CcC--HHHHHHHHHhheeeeEEEecccHHHHHHHHHHhChHH------HHHHHHHHHHhhC--CcchHHHHHHHHHH
Confidence 665 8999999999999999999999999999999999999 9999999999999 48999999987653
No 2
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.93 E-value=1.8e-26 Score=213.42 Aligned_cols=123 Identities=22% Similarity=0.328 Sum_probs=112.9
Q ss_pred cchhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCC
Q 035516 9 KGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPE 88 (167)
Q Consensus 9 ~~~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~ 88 (167)
++..-+|+++.+|||+|.|++++|+|||.|||++|+|||+||++++.+. .+.+|.|.
T Consensus 25 ~~l~~lr~~~~lcDv~L~v~~~~~~aHR~VLAa~S~YFraMFt~~l~e~----------------------~~~~i~l~- 81 (571)
T KOG4441|consen 25 QGLNELREEGLLCDVTLLVGDREFPAHRVVLAACSPYFRAMFTSGLKES----------------------KQKEINLE- 81 (571)
T ss_pred HHHHHHHHhCCCceEEEEECCeeechHHHHHHhccHHHHHHhcCCcccc----------------------cceEEEEe-
Confidence 3456799999999999999999999999999999999999999988651 45789999
Q ss_pred CCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhhh
Q 035516 89 DFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCE 164 (167)
Q Consensus 89 ~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~~ 164 (167)
+++ +.+++++++|+|||++.|+.+||+.|+.||.+|||++ |++.|.+||.+++. .+||+.+.+.++
T Consensus 82 ~v~--~~~l~~ll~y~Yt~~i~i~~~nVq~ll~aA~~lQi~~------v~~~C~~fL~~~l~--~~Nclgi~~~a~ 147 (571)
T KOG4441|consen 82 GVD--PETLELLLDYAYTGKLEISEDNVQELLEAASLLQIPE------VVDACCEFLESQLD--PSNCLGIRRFAE 147 (571)
T ss_pred cCC--HHHHHHHHHHhhcceEEechHhHHHHHHHHHHhhhHH------HHHHHHHHHHhcCC--HHHHHHHHHHHH
Confidence 876 8999999999999999999999999999999999999 99999999999995 999999776554
No 3
>PHA02713 hypothetical protein; Provisional
Probab=99.93 E-value=3.1e-26 Score=210.59 Aligned_cols=120 Identities=16% Similarity=0.272 Sum_probs=107.4
Q ss_pred cchhhhhhcCCCeeEEEEEc-CeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeC
Q 035516 9 KGQAWFCTTGLPSDIVIEVD-EMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIP 87 (167)
Q Consensus 9 ~~~~~~R~~g~lcDvtI~V~-g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~ 87 (167)
+....||+++.+|||+|.|+ |++|+|||+|||++|+|||+||++++.+. ..+.+|+|+
T Consensus 14 ~~l~~lr~~~~l~DV~L~v~~~~~f~~Hr~vLaa~S~YF~amF~~~~~e~---------------------~~~~~v~l~ 72 (557)
T PHA02713 14 SNISNLLDDDILCDVIITIGDGEEIKAHKTILAAGSKYFRTLFTTPMIIR---------------------DLVTRVNLQ 72 (557)
T ss_pred HHHHHHHhCCCCCCEEEEeCCCCEEeehHHHHhhcCHHHHHHhcCCchhh---------------------ccCceEEec
Confidence 45677899999999999998 89999999999999999999999987530 024579999
Q ss_pred CCCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHh
Q 035516 88 EDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKS 162 (167)
Q Consensus 88 ~~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~ 162 (167)
+++ +++|+.||+|+|||+ |+.+||++|+.||++|||+. |++.|++||.+++. .++|+.+++.
T Consensus 73 -~v~--~~~~~~ll~y~Yt~~--i~~~nv~~ll~aA~~lqi~~------l~~~C~~~l~~~l~--~~NCl~i~~~ 134 (557)
T PHA02713 73 -MFD--KDAVKNIVQYLYNRH--ISSMNVIDVLKCADYLLIDD------LVTDCESYIKDYTN--HDTCIYMYHR 134 (557)
T ss_pred -cCC--HHHHHHHHHHhcCCC--CCHHHHHHHHHHHHHHCHHH------HHHHHHHHHHhhCC--ccchHHHHHH
Confidence 886 899999999999997 68999999999999999999 99999999999984 8899998863
No 4
>PHA03098 kelch-like protein; Provisional
Probab=99.89 E-value=2.6e-23 Score=187.40 Aligned_cols=111 Identities=19% Similarity=0.237 Sum_probs=101.6
Q ss_pred cCCCeeEEEEE--cCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCCh
Q 035516 17 TGLPSDIVIEV--DEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGS 94 (167)
Q Consensus 17 ~g~lcDvtI~V--~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a 94 (167)
++.+|||+|.| +|++|+|||.||+++|+|||+||++++.. .+|+|+ + + +
T Consensus 6 ~~~~~Dv~l~~~~~~~~~~~Hk~vLaa~S~yF~~mf~~~~~~-------------------------~~i~l~-~-~--~ 56 (534)
T PHA03098 6 LQKFCDESIIIVNGGGIIKVHKIILSSSSEYFKKMFKNNFKE-------------------------NEINLN-I-D--Y 56 (534)
T ss_pred cCCCCCEEEEEEcCCEEEEeHHHHHHhhhHHHHHHHhCCCCC-------------------------ceEEec-C-C--H
Confidence 78999999998 99999999999999999999999987642 468888 6 5 8
Q ss_pred HHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhhh
Q 035516 95 ETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCE 164 (167)
Q Consensus 95 ~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~~ 164 (167)
++|+.||+|+|||++.|+.+|+.+|+.||++|||+. |++.|++||.+.+ +.++|+.+++.++
T Consensus 57 ~~~~~~l~y~Ytg~~~i~~~~~~~ll~~A~~l~~~~------l~~~C~~~l~~~l--~~~nc~~~~~~a~ 118 (534)
T PHA03098 57 DSFNEVIKYIYTGKINITSNNVKDILSIANYLIIDF------LINLCINYIIKII--DDNNCIDIYRFSF 118 (534)
T ss_pred HHHHHHHHHhcCCceEEcHHHHHHHHHHHHHhCcHH------HHHHHHHHHHHhC--CHhHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999887 5889999887544
No 5
>PF00651 BTB: BTB/POZ domain; InterPro: IPR013069 The BTB (for BR-C, ttk and bab) [] or POZ (for Pox virus and Zinc finger) [] domain is present near the N terminus of a fraction of zinc finger (IPR007087 from INTERPRO) proteins and in proteins that contain the IPR006652 from INTERPRO motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation []. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule []. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [, , ]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.; GO: 0005515 protein binding; PDB: 3M5B_A 1R28_B 3LBZ_A 3E4U_F 3BIM_B 1R2B_A 1R29_A 2VPK_A 2YY9_B 3GA1_A ....
Probab=99.87 E-value=4.7e-22 Score=143.27 Aligned_cols=106 Identities=27% Similarity=0.393 Sum_probs=92.6
Q ss_pred hhhhhcCCCeeEEEEEc-CeEEeecccccccCCHHHHHHhhCC-CCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCC
Q 035516 12 AWFCTTGLPSDIVIEVD-EMSFHLHKFPLMSKSRKLHQLITEQ-ENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPED 89 (167)
Q Consensus 12 ~~~R~~g~lcDvtI~V~-g~~F~~HK~VLaa~S~YFr~lf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~ 89 (167)
+.+++++.+||++|.|+ ++.|++||.+|+++|+||+.||.+. ..+. ....|.++ +
T Consensus 2 ~~~~~~~~~~D~~i~v~d~~~~~vhk~iL~~~S~~F~~~~~~~~~~~~----------------------~~~~i~~~-~ 58 (111)
T PF00651_consen 2 NDLFNSNEFSDVTIRVGDGKTFYVHKNILAARSPYFRNLFEGSKFKES----------------------TVPEISLP-D 58 (111)
T ss_dssp HHHHHHTTS--EEEEETTTEEEEE-HHHHHHHBHHHHHHHTTTTSTTS----------------------SEEEEEET-T
T ss_pred hHHHcCCCCCCEEEEECCCEEEeechhhhhccchhhhhcccccccccc----------------------cccccccc-c
Confidence 45788999999999999 8999999999999999999999987 2220 23478888 8
Q ss_pred CCCChHHHHHHhHhhhCceeeec-cCchhhHHHcccccccCchhhhhhHHHHHHHHHHHh
Q 035516 90 FPGGSETFEMVAKFCYGVKMELS-SSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQS 148 (167)
Q Consensus 90 ~~g~a~~f~~ll~F~Ytg~l~is-~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~ 148 (167)
++ +++|+.+++|+|++++.+. .+++..++..|++|+|+. |++.|.+||.++
T Consensus 59 ~~--~~~~~~~l~~~Y~~~~~~~~~~~~~~ll~lA~~~~~~~------L~~~~~~~l~~~ 110 (111)
T PF00651_consen 59 VS--PEAFEAFLEYMYTGEIEINSDENVEELLELADKLQIPE------LKKACEKFLQES 110 (111)
T ss_dssp SC--HHHHHHHHHHHHHSEEEEE-TTTHHHHHHHHHHTTBHH------HHHHHHHHHHHH
T ss_pred cc--ccccccccccccCCcccCCHHHHHHHHHHHHHHhCcHH------HHHHHHHHHHhC
Confidence 87 8999999999999999998 999999999999999999 999999999875
No 6
>smart00225 BTB Broad-Complex, Tramtrack and Bric a brac. Domain in Broad-Complex, Tramtrack and Bric a brac. Also known as POZ (poxvirus and zinc finger) domain. Known to be a protein-protein interaction motif found at the N-termini of several C2H2-type transcription factors as well as Shaw-type potassium channels. Known structure reveals a tightly intertwined dimer formed via interactions between N-terminal strand and helix structures. However in a subset of BTB/POZ domains, these two secondary structures appear to be missing. Be aware SMART predicts BTB/POZ domains without the beta1- and alpha1-secondary structures.
Probab=99.78 E-value=3.5e-19 Score=120.69 Aligned_cols=90 Identities=26% Similarity=0.392 Sum_probs=80.6
Q ss_pred eEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHh
Q 035516 22 DIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVA 101 (167)
Q Consensus 22 DvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll 101 (167)
|++|.|+|+.|++||.+|++.|+||+.||.+...+. ....+.++ +.+ +.+|+.++
T Consensus 1 dv~i~v~~~~~~~h~~iL~~~s~~f~~~~~~~~~~~----------------------~~~~i~l~-~~~--~~~f~~~l 55 (90)
T smart00225 1 DVTLVVGGKKFKAHKAVLAACSPYFKALFSGDFKES----------------------KKSEIYLD-DVS--PEDFRALL 55 (90)
T ss_pred CeEEEECCEEEehHHHHHhhcCHHHHHHHcCCCccC----------------------CCCEEEec-CCC--HHHHHHHH
Confidence 789999999999999999999999999998765420 24578888 775 89999999
Q ss_pred HhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHH
Q 035516 102 KFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTE 142 (167)
Q Consensus 102 ~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~ 142 (167)
+|+|++++.+...|+..++.+|++++|++ |++.|+
T Consensus 56 ~~ly~~~~~~~~~~~~~l~~~a~~~~~~~------l~~~c~ 90 (90)
T smart00225 56 EFLYTGKLDLPEENVEELLELADYLQIPG------LVELCE 90 (90)
T ss_pred HeecCceeecCHHHHHHHHHHHHHHCcHH------HHhhhC
Confidence 99999999999999999999999999998 888874
No 7
>KOG4350 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=99.49 E-value=2.4e-14 Score=129.13 Aligned_cols=81 Identities=21% Similarity=0.312 Sum_probs=68.1
Q ss_pred ccchhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeC
Q 035516 8 SKGQAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIP 87 (167)
Q Consensus 8 ~~~~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~ 87 (167)
+.-...+..+....||+++|++.+|++||+|||++|.|||+|+-+++.++ .+..|.|.
T Consensus 32 S~~~~~l~~~e~y~DVtfvve~~rfpAHRvILAaRs~yFRAlLYgGm~Es----------------------~q~~ipLq 89 (620)
T KOG4350|consen 32 SQSFDELFTSEDYSDVTFVVEDTRFPAHRVILAARSSYFRALLYGGMQES----------------------HQQLIPLQ 89 (620)
T ss_pred hHHHHHHhhcCcccceEEEEeccccchhhhhHHHHHHHHHHHHhhhhhhh----------------------hhcccccc
Confidence 44456778889999999999999999999999999999999999988641 24556676
Q ss_pred CCCCCChHHHHHHhHhhhCceeeecc
Q 035516 88 EDFPGGSETFEMVAKFCYGVKMELSS 113 (167)
Q Consensus 88 ~~~~g~a~~f~~ll~F~Ytg~l~is~ 113 (167)
.- .+++|.++++|+|||++.++.
T Consensus 90 -~t--~~eAF~~lLrYiYtg~~~l~~ 112 (620)
T KOG4350|consen 90 -ET--NSEAFRALLRYIYTGKIDLAG 112 (620)
T ss_pred -cc--cHHHHHHHHHHHhhcceeccc
Confidence 33 389999999999999998765
No 8
>KOG2075 consensus Topoisomerase TOP1-interacting protein BTBD1 [Function unknown]
Probab=99.35 E-value=1.4e-12 Score=118.92 Aligned_cols=124 Identities=19% Similarity=0.260 Sum_probs=106.0
Q ss_pred cchhhhhhcCCCeeEEEEEcC-----eEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccce
Q 035516 9 KGQAWFCTTGLPSDIVIEVDE-----MSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCH 83 (167)
Q Consensus 9 ~~~~~~R~~g~lcDvtI~V~g-----~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (167)
+.+.-+..+...+|+.++|++ ++||+||.|||..|.-|.+||.++..+. ...+
T Consensus 103 er~~~l~~n~~~adv~fivg~~~~~~q~~paHk~vla~gS~VFdaMf~g~~a~~----------------------~s~e 160 (521)
T KOG2075|consen 103 ERQAALFNNELLADVHFIVGEEDGGSQRIPAHKLVLADGSDVFDAMFYGGLAED----------------------ASLE 160 (521)
T ss_pred HhhHhhccCcccceeEEEeccCCCcccccchhhhhhhcchHHHHHHhccCcccc----------------------cCce
Confidence 345556678999999999973 8999999999999999999999887641 2357
Q ss_pred EEeCCCCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhh
Q 035516 84 ISIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSC 163 (167)
Q Consensus 84 I~L~~~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~ 163 (167)
|.+| ++. +.+|...++|+|+..+.+..+|+..++.+|+..-++. |.+.|.+||+..+. .++.+..|-+|
T Consensus 161 i~lp-dve--paaFl~~L~flYsdev~~~~dtvi~tl~~AkKY~Vpa------Ler~CVkflr~~l~--~~naf~~L~q~ 229 (521)
T KOG2075|consen 161 IRLP-DVE--PAAFLAFLRFLYSDEVKLAADTVITTLYAAKKYLVPA------LERQCVKFLRKNLM--ADNAFLELFQR 229 (521)
T ss_pred eecC-CcC--hhHhHHHHHHHhcchhhhhHHHHHHHHHHHHHhhhHH------HHHHHHHHHHHhcC--ChHHHHHHHHH
Confidence 9999 897 8999999999999999999999999999999988988 99999999999886 56666655554
Q ss_pred hh
Q 035516 164 EN 165 (167)
Q Consensus 164 ~~ 165 (167)
.+
T Consensus 230 A~ 231 (521)
T KOG2075|consen 230 AK 231 (521)
T ss_pred HH
Confidence 33
No 9
>KOG4591 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.97 E-value=7e-10 Score=92.95 Aligned_cols=119 Identities=15% Similarity=0.224 Sum_probs=95.5
Q ss_pred hhhhhcCCCeeEEEEEc---CeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCC
Q 035516 12 AWFCTTGLPSDIVIEVD---EMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPE 88 (167)
Q Consensus 12 ~~~R~~g~lcDvtI~V~---g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~ 88 (167)
+-+-+...++|++++++ ++.+++||.|||++|++.. |.++..+ ......+.
T Consensus 58 adL~Ek~qfSDlk~K~~gns~k~i~AHKfVLAARsD~Wk--faN~~de-----------------------kse~~~~d- 111 (280)
T KOG4591|consen 58 ADLLEKEQFSDLKFKFAGNSDKHIPAHKFVLAARSDFWK--FANGGDE-----------------------KSEELDLD- 111 (280)
T ss_pred HHHhhcccccceeEEecCCccccCchhhhhhhhhcchhh--hccCCCc-----------------------chhhhccc-
Confidence 45667889999999998 6899999999999999874 3332221 12345566
Q ss_pred CCCCChHHHHHHhHhhhCceeeeccCch--hhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHHHhhhhc
Q 035516 89 DFPGGSETFEMVAKFCYGVKMELSSSNV--APLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRALKSCENV 166 (167)
Q Consensus 89 ~~~g~a~~f~~ll~F~Ytg~l~is~~nv--~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l~~~~~~ 166 (167)
+.+ +++|...|+++||.+|.+..+.+ ..+...|..+|+.. |.+.|++=+-..+ +.++|+++-+.++.+
T Consensus 112 Dad--~Ea~~t~iRWIYTDEidfk~dD~~L~el~e~An~FqLe~------Lke~C~k~l~a~l--~V~NCIk~Ye~AEe~ 181 (280)
T KOG4591|consen 112 DAD--FEAFHTAIRWIYTDEIDFKEDDEFLLELCELANRFQLEL------LKERCEKGLGALL--HVDNCIKFYEFAEEL 181 (280)
T ss_pred ccC--HHHHHHhheeeeccccccccchHHHHHHHHHHHHHHHHH------HHHHHHHHHhhHh--hHhhHHHHHHHHHHh
Confidence 665 79999999999999998887665 56899999999998 9999998887776 489999998887754
No 10
>KOG4682 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=98.91 E-value=3.1e-09 Score=95.91 Aligned_cols=117 Identities=18% Similarity=0.225 Sum_probs=96.8
Q ss_pred hhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCC
Q 035516 13 WFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPG 92 (167)
Q Consensus 13 ~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g 92 (167)
-+..+|.-+||.|..-|.++++||.-|. .|+||.+||.+...++ . ..-..++|+ +-..
T Consensus 62 ~lf~q~enSDv~l~alg~eWrlHk~yL~-QS~yf~smf~Gtw~es------------~--------~~iIqleI~-Dp~I 119 (488)
T KOG4682|consen 62 NLFLQGENSDVILEALGFEWRLHKPYLF-QSEYFKSMFSGTWKES------------S--------MNIIQLEIP-DPNI 119 (488)
T ss_pred HHHhcCCCcceehhhccceeeeeeeeee-ccHHHHHHhccccChh------------h--------CceEEEEcC-CCcc
Confidence 4566899999999999999999999775 6999999998876431 0 123456666 4334
Q ss_pred ChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHH
Q 035516 93 GSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRA 159 (167)
Q Consensus 93 ~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~ 159 (167)
..++|..++.=+|..+++|..+.|..+++||.+|++.. |.++|.+-+...+. .++++..
T Consensus 120 d~~al~~a~gsLY~dEveI~l~dv~gvlAaA~~lqldg------l~qrC~evMie~ls--pkta~~y 178 (488)
T KOG4682|consen 120 DVVALQVAFGSLYRDEVEIKLSDVVGVLAAACLLQLDG------LIQRCGEVMIETLS--PKTACGY 178 (488)
T ss_pred cHHHHHHHHhhhhhhheeccHHHHHHHHHHHHHHHHhh------HHHHHHHHHHHhcC--hhhhhHh
Confidence 58999999999999999999999999999999999999 99999999998883 6666654
No 11
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.57 E-value=4.5e-08 Score=94.70 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=76.8
Q ss_pred CCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHH
Q 035516 18 GLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETF 97 (167)
Q Consensus 18 g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f 97 (167)
-..|||+++ ||+.|+|||++|++++.||..||..-..++ ..|... +.|-.++.|
T Consensus 710 ~~d~~i~~K-DGkvl~aHkc~L~aRlEYF~smf~~~w~E~------------------------sS~t~~-~~p~~~e~m 763 (1267)
T KOG0783|consen 710 TMDTVIKLK-DGKVLKAHKCFLSARLEYFSSMFQFVWMES------------------------SSITVN-LSPLTVEHM 763 (1267)
T ss_pred ceeEEEEec-CCcCcccceeEeeeHHHHHHHHHHHHHhhh------------------------ccceee-cCcchHHHH
Confidence 344666666 899999999999999999999998765331 123333 444458999
Q ss_pred HHHhHhhhC-ceeeecc-----CchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhcChHHHHHHH
Q 035516 98 EMVAKFCYG-VKMELSS-----SNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFKSLKDSIRAL 160 (167)
Q Consensus 98 ~~ll~F~Yt-g~l~is~-----~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~~~~~~~~~l 160 (167)
+.||||.|+ .+..+-. +-+..++..|+.|-|.+ |.+.|+.-|...+ +.+.|-.+|
T Consensus 764 ~ivLdylYs~d~~~~~k~~~~~dF~~~il~iaDqlli~~------Lk~Ice~~ll~kl--~lk~~~~ll 824 (1267)
T KOG0783|consen 764 SIVLDYLYSDDKVELFKDLKESDFMFEILSIADQLLILE------LKSICEQSLLRKL--NLKTLPTLL 824 (1267)
T ss_pred HHHHHHHHccchHHHHhccchhhhhHHHHHHHHHHHHHH------HHHHHHHHHHhHh--cccchHHHH
Confidence 999999994 4444322 22566788888888887 8888887776665 355544444
No 12
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=98.53 E-value=1.5e-07 Score=91.09 Aligned_cols=75 Identities=24% Similarity=0.399 Sum_probs=57.4
Q ss_pred cCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhh----hhhhcccccceEEeCCCCCC
Q 035516 17 TGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEE----EGEEEEEATCHISIPEDFPG 92 (167)
Q Consensus 17 ~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~I~L~~~~~g 92 (167)
...+-|||+.||++-|++||.||+++|++||.||....+++ +++ +++- ....+|-+. ++|
T Consensus 555 ~ds~hDVtf~vg~~~F~aHKfIl~~rs~flrkL~l~~~~~s------------~~~dIY~~~~~--~~~~~~~ve-~i~- 618 (1267)
T KOG0783|consen 555 KDSFHDVTFYVGTSMFHAHKFILCARSSFLRKLLLQKKKSS------------VSNDIYIEEIT--QSHSTIRVE-DIP- 618 (1267)
T ss_pred ccccceEEEEecCeecccceEEEEeccHHHHHHHHhhcccc------------ccceeeeeccc--ccCceeeec-cCC-
Confidence 45678999999999999999999999999999998765431 011 0000 023456677 887
Q ss_pred ChHHHHHHhHhhhCce
Q 035516 93 GSETFEMVAKFCYGVK 108 (167)
Q Consensus 93 ~a~~f~~ll~F~Ytg~ 108 (167)
+.+|+++|.|+||..
T Consensus 619 -p~mfe~lL~~iYtdt 633 (1267)
T KOG0783|consen 619 -PLMFEILLHYIYTDT 633 (1267)
T ss_pred -HHHHHHHHHHHhccc
Confidence 799999999999985
No 13
>PF11822 DUF3342: Domain of unknown function (DUF3342); InterPro: IPR021777 This family of proteins are functionally uncharacterised. This family is found in bacteria. This presumed domain is typically between 170 to 303 amino acids in length. The N-terminal half of this family is a BTB-like domain.
Probab=98.15 E-value=3e-06 Score=74.52 Aligned_cols=92 Identities=22% Similarity=0.332 Sum_probs=73.4
Q ss_pred CeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHhHhhhCce
Q 035516 29 EMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYGVK 108 (167)
Q Consensus 29 g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll~F~Ytg~ 108 (167)
.+.|.|.+..|...=+||+..+....+.+ +. . ....|.++=| -.+|+-+++|+.+..
T Consensus 13 ~rdF~C~~~lL~~~M~YF~~~l~~~~~~~-----~~-----------~---~~idisVhCD----v~iF~WLm~yv~~~~ 69 (317)
T PF11822_consen 13 KRDFTCPRDLLVSEMRYFAEYLSRYINDS-----QR-----------W---EEIDISVHCD----VHIFEWLMRYVKGEP 69 (317)
T ss_pred ceeeeccHHHHHHhhHHHHHHHhhccccc-----Cc-----------C---CCcceEEecC----hhHHHHHHHHhhcCC
Confidence 37999999999999999999996522110 00 0 1233444423 479999999999999
Q ss_pred eeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516 109 MELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSV 149 (167)
Q Consensus 109 l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v 149 (167)
..|++.||..|+..++||||++ |++.|-.|+...+
T Consensus 70 p~l~~~NvvsIliSS~FL~M~~------Lve~cl~y~~~~~ 104 (317)
T PF11822_consen 70 PSLTPSNVVSILISSEFLQMES------LVEECLQYCHDHM 104 (317)
T ss_pred CcCCcCcEEEeEehhhhhccHH------HHHHHHHHHHHhH
Confidence 9999999999999999999999 9999999997655
No 14
>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]. They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....
Probab=97.58 E-value=5e-05 Score=54.21 Aligned_cols=89 Identities=17% Similarity=0.241 Sum_probs=64.2
Q ss_pred EEEEEcCeEEeecccccc-cCCHHHHHHhhCC-CCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHH
Q 035516 23 IVIEVDEMSFHLHKFPLM-SKSRKLHQLITEQ-ENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMV 100 (167)
Q Consensus 23 vtI~V~g~~F~~HK~VLa-a~S~YFr~lf~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~l 100 (167)
|+|.|+|+.|.+-+..|. ....+|..|+... .... . .....+-|+ - .+..|+.|
T Consensus 1 V~lNVGG~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~------------------~--~~~~~~fiD--R--dp~~F~~I 56 (94)
T PF02214_consen 1 VRLNVGGTIFETSRSTLTRYPDSLLARLFSGERSDDY------------------D--DDDGEYFID--R--DPELFEYI 56 (94)
T ss_dssp EEEEETTEEEEEEHHHHHTSTTSTTTSHHHTGHGGGE------------------E--TTTTEEEES--S---HHHHHHH
T ss_pred CEEEECCEEEEEcHHHHhhCCCChhhhHHhhcccccc------------------C--CccceEEec--c--ChhhhhHH
Confidence 689999999999999998 6677999999864 1100 0 023456664 3 38999999
Q ss_pred hHhhhC-ceeeec-cCchhhHHHcccccccCchhhhhhH-HHHH
Q 035516 101 AKFCYG-VKMELS-SSNVAPLRCAGEYLEMTEEFAEDNL-ISKT 141 (167)
Q Consensus 101 l~F~Yt-g~l~is-~~nv~~ll~AA~~L~m~~~~~~~nl-~~~c 141 (167)
++|+-+ +.+... ...+..++.-|+|+++.+ + ++.|
T Consensus 57 L~ylr~~~~l~~~~~~~~~~l~~Ea~fy~l~~------l~i~~c 94 (94)
T PF02214_consen 57 LNYLRTGGKLPIPDEICLEELLEEAEFYGLDE------LFIEDC 94 (94)
T ss_dssp HHHHHHTSSB---TTS-HHHHHHHHHHHT-HH------HHBHHC
T ss_pred HHHHhhcCccCCCCchhHHHHHHHHHHcCCCc------cccCCC
Confidence 999999 777764 567888999999999998 6 6655
No 15
>smart00512 Skp1 Found in Skp1 protein family. Family of Skp1 (kinetochore protein required for cell cycle progression) and elongin C (subunit of RNA polymerase II transcription factor SIII) homologues.
Probab=97.51 E-value=0.00013 Score=53.42 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=58.7
Q ss_pred EEEEE-cCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHh
Q 035516 23 IVIEV-DEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVA 101 (167)
Q Consensus 23 vtI~V-~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll 101 (167)
|+|+. +|+.|.+.+.+. ..|.-+|.|+...... ++ ....|.|| +++ +.+++.|+
T Consensus 4 v~L~S~Dg~~f~v~~~~a-~~S~~i~~~l~~~~~~-----------------~~----~~~~Ipl~-~v~--~~~L~~Vi 58 (104)
T smart00512 4 IKLISSDGEVFEVEREVA-RQSKTIKAMIEDLGVD-----------------DE----NNNPIPLP-NVT--SKILSKVI 58 (104)
T ss_pred EEEEeCCCCEEEecHHHH-HHHHHHHHHHHccCcc-----------------cC----CCCCccCC-CcC--HHHHHHHH
Confidence 55554 799999999955 6899999999754321 00 12478898 887 79999999
Q ss_pred HhhhCcee-------------------eeccCchhhHHHccccccc
Q 035516 102 KFCYGVKM-------------------ELSSSNVAPLRCAGEYLEM 128 (167)
Q Consensus 102 ~F~Ytg~l-------------------~is~~nv~~ll~AA~~L~m 128 (167)
+||+--+- .+..+.+.+|+.||+||+|
T Consensus 59 ~yc~~h~~~~~~~~~~~~~~~wD~~F~~~d~~~l~dLl~AAnyL~I 104 (104)
T smart00512 59 EYCEHHVDDPPSVADKDDIPTWDAEFLKIDQETLFELILAANYLDI 104 (104)
T ss_pred HHHHHcccCCCCccccccccHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 99985321 1444567788888888875
No 16
>KOG2716 consensus Polymerase delta-interacting protein PDIP1 and related proteins, contain BTB/POZ domain [Inorganic ion transport and metabolism]
Probab=97.51 E-value=0.00049 Score=58.32 Aligned_cols=112 Identities=12% Similarity=0.211 Sum_probs=84.2
Q ss_pred EEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHhH
Q 035516 23 IVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAK 102 (167)
Q Consensus 23 vtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll~ 102 (167)
|.|.|||..|...|.-|.-...||+.|+..+..-. .| ...-|-|+ - ++.-|+.||+
T Consensus 7 vkLnvGG~~F~Tsk~TLtk~dg~fk~m~e~~i~~~------------------~d--~s~~IFID--R--SpKHF~~ILN 62 (230)
T KOG2716|consen 7 VKLNVGGTIFKTSKSTLTKFDGFFKTMLETDIPVE------------------KD--ESGCIFID--R--SPKHFDTILN 62 (230)
T ss_pred EEEecCCeEEEeehhhhhhhhhHHHHHhhcCCccc------------------cC--CcCcEEec--C--ChhHHHHHHH
Confidence 45889999999999999999999999998875310 00 12345664 2 4799999999
Q ss_pred hhhCceeeecc--CchhhHHHcccccccCchhhhhhHHHHHHHHHHHhh------hcChHHHHHHHHhhh
Q 035516 103 FCYGVKMELSS--SNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSV------FKSLKDSIRALKSCE 164 (167)
Q Consensus 103 F~Ytg~l~is~--~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v------~~~~~~~~~~l~~~~ 164 (167)
|+=.|.+.|.. .++.+|+.=|.|+.+.+ |++.|..=+.... ..+|.+-+.++..+.
T Consensus 63 fmRdGdv~LPe~~kel~El~~EA~fYlL~~------Lv~~C~~~i~~~~~~~~~~~~~~~e~~~ii~~~~ 126 (230)
T KOG2716|consen 63 FMRDGDVDLPESEKELKELLREAEFYLLDG------LVELCQSAIARLIRGYITPIESSEELLQIIANSS 126 (230)
T ss_pred hhhcccccCccchHHHHHHHHHHHHhhHHH------HHHHHHHHhhhcccCccccccchHHHHHHhhccC
Confidence 99988877654 55679999999999999 9999998665432 233666555555444
No 17
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=97.12 E-value=0.00037 Score=61.28 Aligned_cols=88 Identities=19% Similarity=0.222 Sum_probs=61.5
Q ss_pred cCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHH
Q 035516 17 TGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSET 96 (167)
Q Consensus 17 ~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~ 96 (167)
...-.|+-|......|++||++|++++++|+.+...+.+.. .+ .-..|..- +|. -++
T Consensus 127 ~k~c~dldiiFkeTcfpahRA~laaRCpffK~l~nsd~e~~--------------ae------~i~dik~a-g~d--m~~ 183 (401)
T KOG2838|consen 127 RKVCGDLDIIFKETCFPAHRAFLAARCPFFKILANSDEEPE--------------AE------DICDIKFA-GFD--MDA 183 (401)
T ss_pred eeeeccceeeeeeccchHHHHHHHhhCcchhhhccCCCCcc--------------hh------hhhhhhhh-ccC--hHH
Confidence 34567999999999999999999999999999987765430 01 12344444 564 689
Q ss_pred HHHHhHhhhCceeee---ccCchhhHHHcccccc
Q 035516 97 FEMVAKFCYGVKMEL---SSSNVAPLRCAGEYLE 127 (167)
Q Consensus 97 f~~ll~F~Ytg~l~i---s~~nv~~ll~AA~~L~ 127 (167)
|+..+.|.|+|+.-. .-.|+.-|-...+-+|
T Consensus 184 feafLh~l~tgEfgmEd~~fqn~diL~QL~edFG 217 (401)
T KOG2838|consen 184 FEAFLHSLITGEFGMEDLGFQNSDILEQLCEDFG 217 (401)
T ss_pred HHHHHHHHHhcccchhhcCCchHHHHHHHHHhhC
Confidence 999999999997543 3344544444443333
No 18
>PF03931 Skp1_POZ: Skp1 family, tetramerisation domain; InterPro: IPR016073 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a POZ domain with a core structure consisting of beta(2)/alpha(2)/beta(2)/alpha(2) in two layers, alpha/beta. This domain is found at the N-terminal of SKP1 proteins [] as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. ; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 1LM8_C 2XAI_E 1VCB_E 3ZRC_K 3ZRF_E 3DCG_B 2C9W_C 1LQB_B 2IZV_C 1HV2_A ....
Probab=96.83 E-value=0.007 Score=40.71 Aligned_cols=56 Identities=14% Similarity=0.396 Sum_probs=43.2
Q ss_pred EEEEE-cCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHh
Q 035516 23 IVIEV-DEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVA 101 (167)
Q Consensus 23 vtI~V-~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll 101 (167)
|+|+. ||+.|.+.+.+ |-.|..++.|+...... .. .|.|| +++ +.+++.|+
T Consensus 3 v~L~SsDg~~f~V~~~~-a~~S~~i~~ml~~~~~~-----------------------~~-~Ipl~-~v~--~~~L~kVi 54 (62)
T PF03931_consen 3 VKLVSSDGQEFEVSREA-AKQSKTIKNMLEDLGDE-----------------------DE-PIPLP-NVS--SRILKKVI 54 (62)
T ss_dssp EEEEETTSEEEEEEHHH-HTTSHHHHHHHHCTCCC-----------------------GT-EEEET-TS---HHHHHHHH
T ss_pred EEEEcCCCCEEEeeHHH-HHHhHHHHHHHhhhccc-----------------------cc-ccccC-ccC--HHHHHHHH
Confidence 45554 69999998884 55899999999754332 12 68999 897 89999999
Q ss_pred HhhhC
Q 035516 102 KFCYG 106 (167)
Q Consensus 102 ~F~Yt 106 (167)
+||+-
T Consensus 55 ewc~~ 59 (62)
T PF03931_consen 55 EWCEH 59 (62)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 99973
No 19
>KOG1724 consensus SCF ubiquitin ligase, Skp1 component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0019 Score=52.08 Aligned_cols=93 Identities=17% Similarity=0.278 Sum_probs=71.5
Q ss_pred EcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHhHhhhC
Q 035516 27 VDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYG 106 (167)
Q Consensus 27 V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll~F~Yt 106 (167)
.+|+.|.+-.. .|-.|.-++.++....... ....|.|| .+. +.+|.+||+|||-
T Consensus 12 sDG~~f~ve~~-~a~~s~~i~~~~~~~~~~~----------------------~~~~IPl~-nV~--~~iL~kVIewC~~ 65 (162)
T KOG1724|consen 12 SDGEIFEVEEE-VARQSQTISAHMIEDGCAD----------------------ENDPIPLP-NVT--SKILKKVIEWCKK 65 (162)
T ss_pred cCCceeehhHH-HHHHhHHHHHHHHHcCCCc----------------------cCCccccC-ccC--HHHHHHHHHHHHH
Confidence 47999999877 5677888888887543220 11468888 786 7999999999998
Q ss_pred cee-------------------------eeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhhc
Q 035516 107 VKM-------------------------ELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVFK 151 (167)
Q Consensus 107 g~l-------------------------~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~~ 151 (167)
-+- .+...++.+|.-||.||+|+. |.+.|++.+...+..
T Consensus 66 Hk~d~~~~~~~~~~~~~~~i~~WD~~Flk~d~~tLfdli~AAnyLdi~g------Ll~~~ck~va~mikg 129 (162)
T KOG1724|consen 66 HKDDDPANPEDKELPEETDIPEWDAEFLKVDQGTLFDLILAANYLDIKG------LLDLTCKTVANMIKG 129 (162)
T ss_pred cccccccccccccccccCCccHHHHHHHhcCHHHHHHHHHHhhhcccHH------HHHHHHHHHHHHHcc
Confidence 331 123356789999999999999 999999999887744
No 20
>KOG2838 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=96.56 E-value=0.00054 Score=60.21 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=41.3
Q ss_pred EEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHH-HHhHhhhCcee
Q 035516 31 SFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFE-MVAKFCYGVKM 109 (167)
Q Consensus 31 ~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~-~ll~F~Ytg~l 109 (167)
+++|||+|.+++|++||.|+.....++.- ++..+. +....|.+.+-+= |.+|. +++.|+||.++
T Consensus 262 eikahkai~aaRS~ffRnLL~RkiregeE-~sdrtl------------r~PkRIifdE~I~--PkafA~i~lhclYTD~l 326 (401)
T KOG2838|consen 262 EIKAHKAIAAARSKFFRNLLLRKIREGEE-GSDRTL------------RRPKRIIFDELIF--PKAFAPIFLHCLYTDRL 326 (401)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHhhcccc-cccccc------------cCCceeechhhhc--chhhhhhhhhhheeccc
Confidence 68899999999999999998765422100 000000 1244566653221 34444 56789999988
Q ss_pred eec
Q 035516 110 ELS 112 (167)
Q Consensus 110 ~is 112 (167)
.++
T Consensus 327 DlS 329 (401)
T KOG2838|consen 327 DLS 329 (401)
T ss_pred chh
Confidence 764
No 21
>KOG3473 consensus RNA polymerase II transcription elongation factor Elongin/SIII, subunit elongin C [Transcription]
Probab=96.27 E-value=0.012 Score=44.46 Aligned_cols=87 Identities=20% Similarity=0.286 Sum_probs=62.2
Q ss_pred CCCeeE-EEEE-cCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChH
Q 035516 18 GLPSDI-VIEV-DEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSE 95 (167)
Q Consensus 18 g~lcDv-tI~V-~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~ 95 (167)
|.-.+. +|+. ||.+|-.-|- +|.-|+-.|+|+.+....+ +....+|.++ +|| +.
T Consensus 13 gp~~~yVkLvS~Ddhefiikre-~AmtSgTiraml~gpg~~s--------------------e~~~n~v~f~-di~--sh 68 (112)
T KOG3473|consen 13 GPDSMYVKLVSSDDHEFIIKRE-HAMTSGTIRAMLSGPGVFS--------------------EAEKNEVYFR-DIP--SH 68 (112)
T ss_pred CcchhheEeecCCCcEEEEeeh-hhhhhhHHHHHHcCCcccc--------------------ccccceEEec-cch--HH
Confidence 334443 3433 6899999776 6778999999998765321 0134679999 998 89
Q ss_pred HHHHHhHhh-----hCce------eeeccCchhhHHHccccccc
Q 035516 96 TFEMVAKFC-----YGVK------MELSSSNVAPLRCAGEYLEM 128 (167)
Q Consensus 96 ~f~~ll~F~-----Ytg~------l~is~~nv~~ll~AA~~L~m 128 (167)
+++.+..|. |++. ..|.++=+.+|+.||+||+.
T Consensus 69 iLeKvc~Yl~Yk~rY~~~s~eiPeF~IppemaleLL~aAn~Lec 112 (112)
T KOG3473|consen 69 ILEKVCEYLAYKVRYTNSSTEIPEFDIPPEMALELLMAANYLEC 112 (112)
T ss_pred HHHHHHHHhhheeeeccccccCCCCCCCHHHHHHHHHHhhhhcC
Confidence 999999986 4543 23556667889999999863
No 22
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=94.74 E-value=0.024 Score=51.81 Aligned_cols=85 Identities=8% Similarity=0.176 Sum_probs=62.9
Q ss_pred EEEEEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHhH
Q 035516 23 IVIEVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAK 102 (167)
Q Consensus 23 vtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll~ 102 (167)
|.+-+.+ ++|||+++|. +..||..||+++..+.. + + .....+.+| .+. ....+++++
T Consensus 295 iql~~~~-RyP~hla~i~-R~eyfk~mf~g~f~e~s--~-n---------------~~~p~lslp-~~~--~~vveI~lr 351 (516)
T KOG0511|consen 295 IQLPEED-RYPAHLARIL-RVEYFKSMFVGDFIESS--V-N---------------DTRPGLSLP-SLA--DVVVEIDLR 351 (516)
T ss_pred ccccccc-cccHHHHHHH-HHHHHHHHhccchhhhc--C-C---------------ccccccccc-hHH--HHHHHHHHH
Confidence 4444444 4999999875 57899999999875410 0 0 023456677 664 689999999
Q ss_pred hhhCceeeeccCchhhHHHcccccccCc
Q 035516 103 FCYGVKMELSSSNVAPLRCAGEYLEMTE 130 (167)
Q Consensus 103 F~Ytg~l~is~~nv~~ll~AA~~L~m~~ 130 (167)
|.|+.+..|-++-..+++-.|+.|-+.+
T Consensus 352 ~lY~d~tdi~~~~A~dvll~ad~lal~~ 379 (516)
T KOG0511|consen 352 NLYCDQTDIIFDVASDVLLFADKLALAD 379 (516)
T ss_pred HhhcccccchHHHHhhHHHHhhHhhhhh
Confidence 9999999999888888888888887764
No 23
>KOG2714 consensus SETA binding protein SB1 and related proteins, contain BTB/POZ domain [General function prediction only]
Probab=94.54 E-value=0.099 Score=48.21 Aligned_cols=84 Identities=13% Similarity=0.128 Sum_probs=62.1
Q ss_pred EEEEEcCeEEeecccccccCC--HHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHH
Q 035516 23 IVIEVDEMSFHLHKFPLMSKS--RKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMV 100 (167)
Q Consensus 23 vtI~V~g~~F~~HK~VLaa~S--~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~l 100 (167)
|.|.|+|+.|.--+.-|+... .+|-+|+++..... ++ ...-|-|+ - .|+.|..|
T Consensus 13 V~lNVGGriF~Ts~qTL~~~~~DSffsaL~s~~~~s~------------------~~--~~~~iFID--R--DPdlFavi 68 (465)
T KOG2714|consen 13 VKLNVGGRIFETSAQTLTWIPRDSFFSALLSGRINSL------------------KD--ESGAIFID--R--DPDLFAVI 68 (465)
T ss_pred EEEecCceEEecchhhhhcCCcchHHHHHhcCccccc------------------cC--CCCceEec--C--CchHHHHH
Confidence 578899999999998887766 79999998765430 10 11235554 2 37999999
Q ss_pred hHhhhCceeeeccCchhhHHH-cccccccCc
Q 035516 101 AKFCYGVKMELSSSNVAPLRC-AGEYLEMTE 130 (167)
Q Consensus 101 l~F~Ytg~l~is~~nv~~ll~-AA~~L~m~~ 130 (167)
|+|+=|+++.++..-...++- =|.|+|+.+
T Consensus 69 Ln~LRTg~L~~~g~~~~~llhdEA~fYGl~~ 99 (465)
T KOG2714|consen 69 LNLLRTGDLDASGVFPERLLHDEAMFYGLTP 99 (465)
T ss_pred HHHHhcCCCCCccCchhhhhhhhhhhcCcHH
Confidence 999999999995544444444 899999998
No 24
>KOG0511 consensus Ankyrin repeat protein [General function prediction only]
Probab=92.84 E-value=0.03 Score=51.27 Aligned_cols=97 Identities=18% Similarity=0.049 Sum_probs=63.7
Q ss_pred CCccchhhhhhcCCC--eeEEEEEc-CeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccc
Q 035516 6 PTSKGQAWFCTTGLP--SDIVIEVD-EMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATC 82 (167)
Q Consensus 6 ~~~~~~~~~R~~g~l--cDvtI~V~-g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (167)
|.+-.++-+|.+++. .|++..++ |+.|-+||..|+++|.||..-+...... .+
T Consensus 133 ~aahi~s~l~dt~l~~~~di~f~~q~g~~f~ahkfll~arSs~~~~k~v~~~~~------------------------~h 188 (516)
T KOG0511|consen 133 PAAHIQSSLRDTFLGCCHDIDFLQQEGANFDAHKFLLEARSSNYFPKDVMFYVQ------------------------GH 188 (516)
T ss_pred cchHHHHHhhccccccccchHHHhhccccccHHHHHHHhhhcccCchhhhhccc------------------------cC
Confidence 446678889998884 47777775 8999999999999999987665433211 12
Q ss_pred eE-EeCCCCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCc
Q 035516 83 HI-SIPEDFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTE 130 (167)
Q Consensus 83 ~I-~L~~~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~ 130 (167)
+| ... -+ +.+|+..++|.|-..=.+-+..-.+|+.-...+++..
T Consensus 189 eI~~~~-v~---~~~f~~flk~lyl~~na~~~~qynallsi~~kF~~e~ 233 (516)
T KOG0511|consen 189 EIEAHR-VI---LSAFSPFLKQLYLNTNAEWKDQYNALLSIEVKFSKEK 233 (516)
T ss_pred chhhhh-hh---HhhhhHHHHHHHHhhhhhhhhHHHHHHhhhhhccHHH
Confidence 33 222 33 5899999999998622222333344555555555443
No 25
>KOG2715 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=91.48 E-value=1.8 Score=35.88 Aligned_cols=101 Identities=15% Similarity=0.127 Sum_probs=69.6
Q ss_pred eeEEEEEcCeEEeecccccccCCHHHH-HHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHH
Q 035516 21 SDIVIEVDEMSFHLHKFPLMSKSRKLH-QLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEM 99 (167)
Q Consensus 21 cDvtI~V~g~~F~~HK~VLaa~S~YFr-~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ 99 (167)
.=|.+.|+|..|.--|.-|.--+.-|. .+........ ++ .| ..--.-|+ - .+.-|..
T Consensus 21 ~wVRlNVGGt~f~TtktTl~rdp~sFl~rl~q~~~~l~-------------sd---rD--etGAYlID--R--DP~~Fgp 78 (210)
T KOG2715|consen 21 LWVRLNVGGTVFLTTKTTLPRDPKSFLYRLCQREKDLP-------------SD---RD--ETGAYLID--R--DPFYFGP 78 (210)
T ss_pred EEEEEecCCEEEEeeeeccccCcHHHHHHHHhcccCCC-------------CC---cc--ccCceEec--c--CcchHHH
Confidence 335677999999999999999995554 4444443321 00 11 11112222 2 2689999
Q ss_pred HhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516 100 VAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSV 149 (167)
Q Consensus 100 ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v 149 (167)
||+|.--|++.++.-.-..++.-|+|..++. |++..++=+.+..
T Consensus 79 vLNylRhgklvl~~l~eeGvL~EAefyn~~~------li~likd~i~dRd 122 (210)
T KOG2715|consen 79 VLNYLRHGKLVLNKLSEEGVLEEAEFYNDPS------LIQLIKDRIQDRD 122 (210)
T ss_pred HHHHHhcchhhhhhhhhhccchhhhccCChH------HHHHHHHHHHHHh
Confidence 9999999999999866677899999999998 7777666665443
No 26
>COG5201 SKP1 SCF ubiquitin ligase, SKP1 component [Posttranslational modification, protein turnover, chaperones]
Probab=90.89 E-value=0.64 Score=36.94 Aligned_cols=94 Identities=16% Similarity=0.261 Sum_probs=65.8
Q ss_pred EEE-EEcCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHh
Q 035516 23 IVI-EVDEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVA 101 (167)
Q Consensus 23 vtI-~V~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll 101 (167)
|.| ..+|..|.+.+. .|-+|-..+.|+...... ...+.+| .+. +.+|..|+
T Consensus 4 i~l~s~dge~F~vd~~-iAerSiLikN~l~d~~~~------------------------n~p~p~p-nVr--Ssvl~kv~ 55 (158)
T COG5201 4 IELESIDGEIFRVDEN-IAERSILIKNMLCDSTAC------------------------NYPIPAP-NVR--SSVLMKVQ 55 (158)
T ss_pred eEEEecCCcEEEehHH-HHHHHHHHHHHhcccccc------------------------CCCCccc-chh--HHHHHHHH
Confidence 444 357999999888 678888888876533221 1234455 553 89999999
Q ss_pred HhhhCceeeecc-------------------------CchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhh
Q 035516 102 KFCYGVKMELSS-------------------------SNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVF 150 (167)
Q Consensus 102 ~F~Ytg~l~is~-------------------------~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~ 150 (167)
+||--.+-.+++ .-..++.-||.||++++ |++.|++-+...+.
T Consensus 56 ew~ehh~~s~sede~d~~~rks~p~D~wdr~Fm~vDqemL~eI~laaNYL~ikp------LLd~gCKivaemir 123 (158)
T COG5201 56 EWMEHHTSSLSEDENDLEIRKSKPSDFWDRFFMEVDQEMLLEICLAANYLEIKP------LLDLGCKIVAEMIR 123 (158)
T ss_pred HHHHhccccCCCccChHhhhccCCccHHHHHHHHhhHHHHHHHHHhhccccchH------HHHHHHHHHHHHHc
Confidence 999653322221 12356778999999999 99999999887773
No 27
>PF01466 Skp1: Skp1 family, dimerisation domain; InterPro: IPR016072 SKP1 (together with SKP2) was identified as an essential component of the cyclin A-CDK2 S phase kinase complex []. It was found to bind several F-box containing proteins (e.g., Cdc4, Skp2, cyclin F) and to be involved in the ubiquitin protein degradation pathway. A yeast homologue of SKP1 (P52286) was identified in the centromere bound kinetochore complex [] and is also involved in the ubiquitin pathway []. In Dictyostelium discoideum (Slime mold) FP21 was shown to be glycosylated in the cytosol and has homology to SKP1 []. This entry represents a dimerisation domain found at the C-terminal of SKP1 proteins [], as well as in subunit D of the centromere DNA-binding protein complex Cbf3 []. This domain is multi-helical in structure, and consists of an interlocked herterodimer in F-box proteins.; GO: 0006511 ubiquitin-dependent protein catabolic process; PDB: 2P1O_A 3OGL_G 3OGM_A 3C6O_A 2P1N_A 2P1Q_A 3OGK_I 3C6N_A 3C6P_A 2P1P_A ....
Probab=90.35 E-value=0.11 Score=36.38 Aligned_cols=34 Identities=15% Similarity=0.354 Sum_probs=28.1
Q ss_pred eccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhhh
Q 035516 111 LSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSVF 150 (167)
Q Consensus 111 is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v~ 150 (167)
++...+..|+.||.||+|+. |++.|.+++...+.
T Consensus 11 ~~~~~L~~l~~AA~yL~I~~------L~~~~~~~iA~~i~ 44 (78)
T PF01466_consen 11 VDNDELFDLLNAANYLDIKG------LLDLCCKYIANMIK 44 (78)
T ss_dssp S-HHHHHHHHHHHHHHT-HH------HHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHcchH------HHHHHHHHHHHHhc
Confidence 35567889999999999999 99999999988773
No 28
>KOG3840 consensus Uncharaterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=90.03 E-value=2.1 Score=38.61 Aligned_cols=115 Identities=19% Similarity=0.307 Sum_probs=78.0
Q ss_pred hhcCCCeeEEEEEcCeEEeecccccccCCH-HHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCC
Q 035516 15 CTTGLPSDIVIEVDEMSFHLHKFPLMSKSR-KLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGG 93 (167)
Q Consensus 15 R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~-YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~ 93 (167)
|+.|..--+++.|++..|.+-+.+|-+.-. ..-.||..+..-. +.+|. .+.++-+|+.
T Consensus 90 ~~pg~~~~~t~lvd~~rf~v~q~llt~~p~Tmlg~mf~~g~~f~--------------~pNEr-----gEyeVAdGi~-- 148 (438)
T KOG3840|consen 90 CSPGEGDKVCLLVDQTRFLVSQRLLTSKPDTMLGRMFSMGADLV--------------SPNER-----DEFEVADGMT-- 148 (438)
T ss_pred CCCCCCcceEEEeeeEEEEeeeeeecCCcchhhhhhhccccccc--------------CCCcC-----Cceehhcchh--
Confidence 455666668899999999999998876432 3344565543210 01122 2344433774
Q ss_pred hHHHHHHhHhhhCceeeec-cCchhhHHHcccccccCchhhh---------------hhHHHHHHHHHHHhhh
Q 035516 94 SETFEMVAKFCYGVKMELS-SSNVAPLRCAGEYLEMTEEFAE---------------DNLISKTERFLSQSVF 150 (167)
Q Consensus 94 a~~f~~ll~F~Ytg~l~is-~~nv~~ll~AA~~L~m~~~~~~---------------~nl~~~c~~FL~~~v~ 150 (167)
...|..||+|--+|.|.-. .-.|.+|..|++||-|+-+++. ++..++-+-||.+.++
T Consensus 149 s~vFRAILdYYksG~iRCP~~vSvpELrEACDYLlipF~a~TvkCqnL~aLlHELSNeGAR~QFe~fLEe~IL 221 (438)
T KOG3840|consen 149 SSCFRAILDYYQSGTMRCPSSVSVSELREACDYLLVPFNAQTVKCQNLHALLHELSNEGAREQFSQFLEEIIL 221 (438)
T ss_pred HHHHHHHHHHHhcCceeCCCCCchHHHHhhcceEEeecccceeeehhHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 8999999999999988754 3578999999999999875432 4456667777777653
No 29
>KOG1987 consensus Speckle-type POZ protein SPOP and related proteins with TRAF, MATH and BTB/POZ domains [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=86.81 E-value=0.34 Score=40.78 Aligned_cols=98 Identities=15% Similarity=0.088 Sum_probs=59.6
Q ss_pred eeEEEEEc--CeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHH
Q 035516 21 SDIVIEVD--EMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFE 98 (167)
Q Consensus 21 cDvtI~V~--g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~ 98 (167)
-|+.+..+ +..+.+|++++++.|+-|+.++.....+. ....+.+. +.. +..++
T Consensus 99 ~~~~~~~~~~~g~~~~~~~~~~a~~~V~~~~~~~d~~~~----------------------~~~~~~~~-d~~--~~~~~ 153 (297)
T KOG1987|consen 99 LPLTLLIDCSNGFLVAHKLVLVARSEVFEAMGKSDVFKE----------------------SSKLITLL-EEK--PEVLE 153 (297)
T ss_pred cChHHhhcccCcEEEcCceEEEeeecceeeecccccchh----------------------cccccccc-ccc--hhhHh
Confidence 44444433 55699999999999999999887665320 11122444 332 56777
Q ss_pred HHhHhhhCceeeeccCch---hhHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516 99 MVAKFCYGVKMELSSSNV---APLRCAGEYLEMTEEFAEDNLISKTERFLSQSV 149 (167)
Q Consensus 99 ~ll~F~Ytg~l~is~~nv---~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v 149 (167)
.+..|.|+..-.-+..++ ..++++|...+.+. +...|...+.+.+
T Consensus 154 ~~~~F~~~~s~~~~~~~~~~~~~~~a~~f~~~~~~------lk~~~~~~l~~~~ 201 (297)
T KOG1987|consen 154 ALNGFQVLPSQVSSVERIFEKHPDLAAAFKYKNRH------LKLACMPVLLSLI 201 (297)
T ss_pred hhceEEEeccchHHHHHhhcCChhhhhccccccHH------HHHHHHHHHHHHH
Confidence 777777775433333333 25666666666666 7777776665443
No 30
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=86.33 E-value=3.3 Score=35.90 Aligned_cols=92 Identities=12% Similarity=0.169 Sum_probs=65.3
Q ss_pred EEEEEcCeEEeecccccccCC--HHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHH
Q 035516 23 IVIEVDEMSFHLHKFPLMSKS--RKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMV 100 (167)
Q Consensus 23 vtI~V~g~~F~~HK~VLaa~S--~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~l 100 (167)
|.+.++|+.|---+.-|..+= ..+-+||....... ..+ ..--+-|+ - ++.-|+-|
T Consensus 11 vrlnigGk~f~TTidTlv~rEPDSMLa~MF~~~g~~~--------------~~d-----~kGa~lID--R--sp~yFepI 67 (302)
T KOG1665|consen 11 VRLNIGGKKFCTTIDTLVIREPDSMLAAMFSGRGAMC--------------QED-----KKGAVLID--R--SPKYFEPI 67 (302)
T ss_pred heeecCCeEEEEeehhhcccCchHHHHHHHccCCCcc--------------ccc-----cCceEEEc--c--CchhhHHH
Confidence 457789999987776666554 36778887654220 011 12234454 2 36899999
Q ss_pred hHhhhCcee-eeccCchhhHHHcccccccCchhhhhhHHHHHHH
Q 035516 101 AKFCYGVKM-ELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTER 143 (167)
Q Consensus 101 l~F~Ytg~l-~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~ 143 (167)
++|.-.|.+ ..+.-++..++.+|.|+||-. |++--++
T Consensus 68 lNyLr~Gq~~~~s~i~~lgvLeeArff~i~s------L~~hle~ 105 (302)
T KOG1665|consen 68 LNYLRDGQIPSLSDIDCLGVLEEARFFQILS------LKDHLED 105 (302)
T ss_pred HHHHhcCceeecCCccHHHHHHHhhHHhhHh------HHhHHhh
Confidence 999999986 567788999999999999988 7776666
No 31
>PF10905 DUF2695: Protein of unknown function (DUF2695); InterPro: IPR024248 This bacterial family of proteins has no known function.
Probab=61.56 E-value=5.1 Score=26.76 Aligned_cols=23 Identities=13% Similarity=0.060 Sum_probs=19.0
Q ss_pred CCCccchhhhhhcCCCeeEEEEE
Q 035516 5 KPTSKGQAWFCTTGLPSDIVIEV 27 (167)
Q Consensus 5 ~~~~~~~~~~R~~g~lcDvtI~V 27 (167)
.|..++..|+++.|-+||-.|..
T Consensus 30 ~~~~~vl~~l~~nGg~CDCEVl~ 52 (53)
T PF10905_consen 30 LDWEDVLEWLRENGGYCDCEVLY 52 (53)
T ss_pred CCHHHHHHHHHHcCCCcceeeec
Confidence 34578999999999999987753
No 32
>KOG3863 consensus bZIP transcription factor NRF1 [Transcription]
Probab=56.80 E-value=2.5 Score=40.60 Aligned_cols=38 Identities=18% Similarity=0.137 Sum_probs=32.9
Q ss_pred hhhhhhcCCCeeEEEEEcCeEEeecccccccCCHHHHHHhhCC
Q 035516 11 QAWFCTTGLPSDIVIEVDEMSFHLHKFPLMSKSRKLHQLITEQ 53 (167)
Q Consensus 11 ~~~~R~~g~lcDvtI~V~g~~F~~HK~VLaa~S~YFr~lf~~~ 53 (167)
....|+...+||+++.|.++.|.+|+ +|.||..-.-+.
T Consensus 5 ~~~qr~~~~~~~~~~~~~~~~f~~~~-----~~e~~~~~~~G~ 42 (604)
T KOG3863|consen 5 LNDQRKKDVLCDVTAFVERQGFRAHR-----CSEYFTSRIVGQ 42 (604)
T ss_pred ccccccccccchhHHHHhccccccee-----ccchhhhhhccc
Confidence 34578999999999999999999999 899998866544
No 33
>PF09593 Pathogen_betaC1: Beta-satellite pathogenicity beta C1 protein; InterPro: IPR018583 Cotton leaf-curl disease - CLCuD - is of major economic importance in cotton-growing areas of the far-east. The infectious agent appears to be a single-stranded DNA molecule of approx 1350 nucleotides in length, which, when inoculated with the Begomovirus into cotton, induces symptoms typical of CLCuD. This molecule requires the Begomovirus for replication and encapsidation []. DNA beta encodes a single protein, betaC1. The intracellular distribution of betaC1 is consistent with the hypothesis that it has a role in transporting the DNA A of Begomovirus from the nuclear site of replication to the plasmodesmatal exit sites of the infected cell. The DNA beta-encoded protein, betaC1, is the determinant of both pathogenicity and suppression of gene silencing [].
Probab=56.71 E-value=16 Score=28.11 Aligned_cols=77 Identities=21% Similarity=0.150 Sum_probs=49.3
Q ss_pred cCeEEeecccccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHhHhhhCc
Q 035516 28 DEMSFHLHKFPLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVAKFCYGV 107 (167)
Q Consensus 28 ~g~~F~~HK~VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll~F~Ytg 107 (167)
++.++.+|--+++.+||.+..- +-.-.. ....+..|=+|.|..++....++++|.+
T Consensus 20 ~~~~i~V~i~l~ST~sP~l~k~-~f~IpY-----------------------~~~~ii~PFDFNglEe~I~~~l~~mY~~ 75 (117)
T PF09593_consen 20 EDMSIFVHIQLFSTRSPALIKK-KFIIPY-----------------------THEGIIPPFDFNGLEEGIKNTLKIMYKD 75 (117)
T ss_pred CCCEEEEEEEEEECCChHHheE-EEEEec-----------------------cCCCeECCcccCcHHHHHHHHHHHHhCC
Confidence 4689999999999999976431 000111 1223555557887789999999999996
Q ss_pred eeeeccCchhhHHHcccccccC
Q 035516 108 KMELSSSNVAPLRCAGEYLEMT 129 (167)
Q Consensus 108 ~l~is~~nv~~ll~AA~~L~m~ 129 (167)
. .+..--..++..+-+.|=|.
T Consensus 76 s-~~~efk~EDmve~IDIlmme 96 (117)
T PF09593_consen 76 S-KIEEFKQEDMVEAIDILMME 96 (117)
T ss_pred C-CcccccHHHHHhhhheeeec
Confidence 3 23333344555555555444
No 34
>KOG2723 consensus Uncharacterized conserved protein, contains BTB/POZ domain [General function prediction only]
Probab=50.60 E-value=55 Score=27.78 Aligned_cols=84 Identities=12% Similarity=0.125 Sum_probs=53.5
Q ss_pred EEEEEcCeEEeeccc-ccccCCHHHHHHhhCCCCCCchhhhhhhhhhhhhhhhhhcccccceEEeCCCCCCChHHHHHHh
Q 035516 23 IVIEVDEMSFHLHKF-PLMSKSRKLHQLITEQENKPTMAWKQEKETEIEEEEGEEEEEATCHISIPEDFPGGSETFEMVA 101 (167)
Q Consensus 23 vtI~V~g~~F~~HK~-VLaa~S~YFr~lf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~L~~~~~g~a~~f~~ll 101 (167)
+.|-|+|..|..-.. ...=--....+||+....-. + + ..-...|+-+ ...|+-|+
T Consensus 11 v~lnvGG~~ytt~l~tL~~~~ds~L~~~f~~~~~~~-------~--------d-----~~g~~fIDRD----G~lFRyvL 66 (221)
T KOG2723|consen 11 VELNVGGAIYTTRLGTLTKFPDSMLARMFSGELPLL-------R--------D-----SKGRYFIDRD----GFLFRYVL 66 (221)
T ss_pred eeeccCCeEEEeeccceeechHHHHHhhcCCCCCcc-------c--------c-----ccccEEEcCC----cchHHHHH
Confidence 467789988775333 22223334555565422110 0 0 1223455422 36999999
Q ss_pred HhhhCceeeecc--CchhhHHHcccccccCc
Q 035516 102 KFCYGVKMELSS--SNVAPLRCAGEYLEMTE 130 (167)
Q Consensus 102 ~F~Ytg~l~is~--~nv~~ll~AA~~L~m~~ 130 (167)
+|+=+..+.+.. .++..|..=|+|+++.+
T Consensus 67 ~~LRt~~l~lpe~f~e~~~L~rEA~f~~l~~ 97 (221)
T KOG2723|consen 67 DYLRTKALLLPEDFAEVERLVREAEFFQLEA 97 (221)
T ss_pred HHhcccccccchhhhhHHHHHHHHHHHcccc
Confidence 999997777766 78999999999999997
No 35
>KOG3713 consensus Voltage-gated K+ channel KCNB/KCNC [Inorganic ion transport and metabolism]
Probab=43.16 E-value=71 Score=30.15 Aligned_cols=103 Identities=13% Similarity=0.080 Sum_probs=58.9
Q ss_pred CeeEEEEEcCeEEeecccccccCC-HHHHHHhhCCCCCCchhhhhhhhhhhhhh--hhhhcccccceEEeCCCCCCChHH
Q 035516 20 PSDIVIEVDEMSFHLHKFPLMSKS-RKLHQLITEQENKPTMAWKQEKETEIEEE--EGEEEEEATCHISIPEDFPGGSET 96 (167)
Q Consensus 20 lcDvtI~V~g~~F~~HK~VLaa~S-~YFr~lf~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~I~L~~~~~g~a~~ 96 (167)
..=|.|.|||.++.+-+..|...= ..+-++......+. --+-+ -|+ ...+.-++ ..|.+
T Consensus 30 ~~~i~lNVGG~r~~l~~~tL~~~P~TRL~rL~~~~~~~~----------~l~~cDdyd~----~~~EyfFD----R~P~~ 91 (477)
T KOG3713|consen 30 DRRVRLNVGGTRHELYWSTLKRFPLTRLGRLADCNSHEE----------RLELCDDYDP----VTNEYFFD----RHPGA 91 (477)
T ss_pred CcEEEEeeCCeeEEehHHHHhhCchhHHHHHHhcccchh----------hhhhccccCc----ccCeeeec----cChHH
Confidence 345788899999999887776621 12222222111000 00000 000 11222232 23789
Q ss_pred HHHHhHhhhCceeeecc-CchhhHHHcccccccCchhhhhhHHHHHHHHH
Q 035516 97 FEMVAKFCYGVKMELSS-SNVAPLRCAGEYLEMTEEFAEDNLISKTERFL 145 (167)
Q Consensus 97 f~~ll~F~Ytg~l~is~-~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL 145 (167)
|..|++|-+||++..-. --......=.+|.++++ +-++.|+.--
T Consensus 92 F~~Vl~fYrtGkLH~p~~vC~~~F~eEL~yWgI~~-----~~le~CC~~~ 136 (477)
T KOG3713|consen 92 FAYVLNFYRTGKLHVPADVCPLSFEEELDYWGIDE-----AHLESCCWMR 136 (477)
T ss_pred HHHHHHHHhcCeeccccccchHHHHHHHHHhCCCh-----hhhhHHhHHH
Confidence 99999999999997644 23344566668999998 4677777543
No 36
>TIGR01121 D_amino_aminoT D-amino acid aminotransferase. Specificity is broad for various D-amino acids, and differs among members of the family; the family is designated equivalog, but with this caveat attached.
Probab=25.08 E-value=48 Score=27.87 Aligned_cols=58 Identities=10% Similarity=0.282 Sum_probs=44.8
Q ss_pred CCCCChHHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHh
Q 035516 89 DFPGGSETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQS 148 (167)
Q Consensus 89 ~~~g~a~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~ 148 (167)
++--|-..||.+. +|.|++..-..+...|...|..|+|+..+..+.+.+.+.+.+..+
T Consensus 22 gl~yGdgvFEtir--~~~g~~~~l~~H~~RL~~Sa~~l~i~~~~~~~~l~~~i~~~~~~~ 79 (276)
T TIGR01121 22 GYQFGDGVYEVIR--VYNGKLFTVNEHIDRLYASAAKIRIDIPYTKEELHQLLHELVEKN 79 (276)
T ss_pred ccccccEEEEEEE--EECCEEeChHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhc
Confidence 3333345666655 778888888899999999999999987666778888888888653
No 37
>PHA03098 kelch-like protein; Provisional
Probab=24.90 E-value=47 Score=30.22 Aligned_cols=46 Identities=7% Similarity=0.140 Sum_probs=35.9
Q ss_pred HHHHHHhHhhhCceeeeccCchhhHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516 95 ETFEMVAKFCYGVKMELSSSNVAPLRCAGEYLEMTEEFAEDNLISKTERFLSQSV 149 (167)
Q Consensus 95 ~~f~~ll~F~Ytg~l~is~~nv~~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v 149 (167)
...+...+|+- -.|+.+|...++..|...+... |.+.|.+|+.++.
T Consensus 92 ~l~~~C~~~l~---~~l~~~nc~~~~~~a~~~~~~~------L~~~~~~~i~~nf 137 (534)
T PHA03098 92 FLINLCINYII---KIIDDNNCIDIYRFSFFYGCKK------LYSAAYNYIRNNI 137 (534)
T ss_pred HHHHHHHHHHH---HhCCHhHHHHHHHHHHHcCcHH------HHHHHHHHHHHHH
Confidence 34455556653 2478899999999999999888 9999999997654
No 38
>PF01848 HOK_GEF: Hok/gef family; InterPro: IPR000021 The hok/gef family of Gram-negative bacterial proteins are toxic to cells when over-expressed, killing the cells from within by interfering with a vital function in the cell membrane []. Some family members (flm) increase the stability of unstable RNA [], some (pnd) induce the degradation of stable RNA at higher than optimum growth temperatures [], while others affect the release of cellular magnesium by membrane alterations []. The proteins are short (50-70 residues), consisting of an N-terminal hydrophobic (possibly membrane spanning) domain, and a C-terminal periplasmic region, which contains the toxic domain. The C-terminal region contains a conserved cysteine residue that mediates homo-dimerisation in the gef protein, although dimerisation is not necessary for the toxic effect [].; GO: 0016020 membrane
Probab=24.32 E-value=1.1e+02 Score=19.55 Aligned_cols=20 Identities=10% Similarity=0.044 Sum_probs=17.5
Q ss_pred hcCCCeeEEEEEcCeEEeec
Q 035516 16 TTGLPSDIVIEVDEMSFHLH 35 (167)
Q Consensus 16 ~~g~lcDvtI~V~g~~F~~H 35 (167)
..+.+|.+.++.++.+|.+.
T Consensus 21 ~r~sLCEl~i~~g~~evaA~ 40 (43)
T PF01848_consen 21 TRDSLCELRIKDGNTEVAAF 40 (43)
T ss_pred hccCcEEEEEecCCEEEEEE
Confidence 37889999999999999874
No 39
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=22.63 E-value=63 Score=22.13 Aligned_cols=26 Identities=19% Similarity=0.300 Sum_probs=19.9
Q ss_pred hHHHcccccccCchhhhhhHHHHHHHHHHHhh
Q 035516 118 PLRCAGEYLEMTEEFAEDNLISKTERFLSQSV 149 (167)
Q Consensus 118 ~ll~AA~~L~m~~~~~~~nl~~~c~~FL~~~v 149 (167)
.++..|..+++.+ |.+.|.+|+..+.
T Consensus 3 ~i~~~A~~~~~~~------L~~~~~~~i~~nf 28 (103)
T PF07707_consen 3 SIYRLAEKYGLEE------LAEACLRFIAKNF 28 (103)
T ss_dssp HHHHHHHHTT-HH------HHHHHHHHHHHTH
T ss_pred hHHHHHHHcChHH------HHHHHHHHHHHHH
Confidence 4567777778887 9999999998654
No 40
>PF09774 Cid2: Caffeine-induced death protein 2; InterPro: IPR019171 This entry represents proteins that mediate the disruption of the DNA replication checkpoint (S-M checkpoint) mechanism caused by caffeine.
Probab=22.30 E-value=76 Score=24.96 Aligned_cols=30 Identities=30% Similarity=0.471 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhhhcChHHHHHHHHhhhhc
Q 035516 137 LISKTERFLSQSVFKSLKDSIRALKSCENV 166 (167)
Q Consensus 137 l~~~c~~FL~~~v~~~~~~~~~~l~~~~~~ 166 (167)
--.+|.+|..+.|+.+|+.==.++++|...
T Consensus 41 ~~~~C~~f~~~~L~~~w~~R~~vI~~C~~~ 70 (151)
T PF09774_consen 41 ATQKCKDFWEEVLFPSWKSRSQVIKYCINV 70 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 678999999999999999888888888754
Done!