BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035517
         (161 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1IRZ|A Chain A, Solution Structure Of Arr10-B Belonging To The Garp Family
           Of Plant Myb-Related Dna Binding Motifs Of The
           Arabidopsis Response Regulators
          Length = 64

 Score = 52.0 bits (123), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)

Query: 90  KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
           K PR+ WT +LH  F+ AV+ LG  E+A PK +L LMNV  L+  +V SHLQ +R
Sbjct: 4   KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 57


>pdb|3AKB|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
           Regulation By A Streptomyces Coelicolor Calcium-Binding
           Protein
          Length = 166

 Score = 27.7 bits (60), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 67  EGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPD----LHLSFVHAVERLGGQEKATPKLV 122
           +G    +  + ++R T  ++V   + RLR  PD    +   F+HA   LG  +      V
Sbjct: 58  QGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEMARPFLHAA--LGVADTDGDGAV 115

Query: 123 LQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEI 156
                 R L+   V   L    +  LD  G G++
Sbjct: 116 TVADTARALTAFGVPEDLARQAAAALDTDGDGKV 149


>pdb|3AKA|A Chain A, Structural Basis For Prokaryotic Calcium-Mediated
           Regulation By A Streptomyces Coelicolor Calcium-Binding
           Protein
          Length = 166

 Score = 27.7 bits (60), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 6/94 (6%)

Query: 67  EGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPD----LHLSFVHAVERLGGQEKATPKLV 122
           +G    +  + ++R T  ++V   + RLR  PD    +   F+HA   LG  +      V
Sbjct: 58  QGLAGIADRDGDQRITREEFVTGAVKRLRDKPDRFAEIARPFLHAA--LGVADTDGDGAV 115

Query: 123 LQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEI 156
                 R L+   V   L    +  LD  G G++
Sbjct: 116 TVADTARALTAFGVPEDLARQAAAALDTDGDGKV 149


>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
 pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
          Length = 669

 Score = 26.9 bits (58), Expect = 5.5,   Method: Composition-based stats.
 Identities = 13/51 (25%), Positives = 26/51 (50%), Gaps = 1/51 (1%)

Query: 32  WSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRST 82
           W   +  +N    C    D+L+   +  + R+D++E +T  S +N +R S+
Sbjct: 432 WYRLEWGINNSTGCYFAKDILSYQQKYANYRSDYIE-ATKLSNHNEDRTSS 481


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.126    0.364 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,583,788
Number of Sequences: 62578
Number of extensions: 166015
Number of successful extensions: 359
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 338
Number of HSP's gapped (non-prelim): 27
length of query: 161
length of database: 14,973,337
effective HSP length: 91
effective length of query: 70
effective length of database: 9,278,739
effective search space: 649511730
effective search space used: 649511730
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 47 (22.7 bits)