BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035517
(161 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q700D9|MYBF_ARATH Putative Myb family transcription factor At1g14600 OS=Arabidopsis
thaliana GN=At1g14600 PE=2 SV=2
Length = 255
Score = 114 bits (285), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 51/82 (62%), Positives = 65/82 (79%)
Query: 72 CSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGL 131
C +N+ VR YVRS +PRLRWTP+LH SFVHAV+ LGGQ KATPKLVL++M+V+GL
Sbjct: 4 CGRSNDGVIGGVRPYVRSPVPRLRWTPELHRSFVHAVDLLGGQYKATPKLVLKIMDVKGL 63
Query: 132 SIAHVKSHLQMYRSKKLDEAGQ 153
+I+HVKSHLQMYR ++ G+
Sbjct: 64 TISHVKSHLQMYRGSRITLLGK 85
>sp|Q9FJV5|KAN4_ARATH Probable transcription factor KAN4 OS=Arabidopsis thaliana GN=KAN4
PE=1 SV=1
Length = 276
Score = 91.7 bits (226), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK-L 148
+ PR+RWT LH FVHAV+ LGG E+ATPK VL+LMNV+ L++AHVKSHLQMYR+ K
Sbjct: 104 RAPRMRWTSTLHAHFVHAVQLLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTVKCT 163
Query: 149 DEAGQGE 155
D+ GE
Sbjct: 164 DKGSPGE 170
>sp|Q941I2|KAN3_ARATH Probable transcription factor KAN3 OS=Arabidopsis thaliana GN=KAN3
PE=2 SV=1
Length = 322
Score = 89.7 bits (221), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 43/71 (60%), Positives = 55/71 (77%), Gaps = 2/71 (2%)
Query: 80 RSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH 139
R T ++ VR+ PR+RWT LH FVHAV+ LGG E+ATPK VL+LM+V+ L++AHVKSH
Sbjct: 155 RFTAKRGVRA--PRMRWTTTLHAHFVHAVQLLGGHERATPKSVLELMDVQDLTLAHVKSH 212
Query: 140 LQMYRSKKLDE 150
LQMYR+ K E
Sbjct: 213 LQMYRTIKSTE 223
>sp|Q9C616|KAN2_ARATH Probable transcription factor KAN2 OS=Arabidopsis thaliana GN=KAN2
PE=2 SV=1
Length = 388
Score = 89.4 bits (220), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 43/72 (59%), Positives = 55/72 (76%), Gaps = 5/72 (6%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS-KKL 148
+ PR+RWT LH FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Sbjct: 212 RAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTT 271
Query: 149 DEA----GQGEI 156
D+A GQ ++
Sbjct: 272 DKAAASSGQSDV 283
>sp|Q93WJ9|KAN1_ARATH Transcription repressor KAN1 OS=Arabidopsis thaliana GN=KAN1 PE=1
SV=1
Length = 403
Score = 89.0 bits (219), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
+ PR+RWT LH FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Sbjct: 218 RAPRMRWTSSLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 275
>sp|Q0J235|ROLL9_ORYSJ Probable transcription factor RL9 OS=Oryza sativa subsp. japonica
GN=RL9 PE=2 SV=2
Length = 532
Score = 88.6 bits (218), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 48/58 (82%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
+ PR+RWT LH FVHAVE LGG E+ATPK VL+LM+V+ L++AHVKSHLQMYR+ K
Sbjct: 323 RAPRMRWTSTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVK 380
>sp|Q8GUN5|PHL1_ARATH Protein PHR1-LIKE 1 OS=Arabidopsis thaliana GN=PHL1 PE=1 SV=1
Length = 413
Score = 82.0 bits (201), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
R+RWTP+LH +FV AV +LGG E+ATPK VL+L+N GL+I HVKSHLQ YR+ +
Sbjct: 233 RMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLNNPGLTIYHVKSHLQKYRTAR 287
>sp|Q9SAK5|APL_ARATH Myb family transcription factor APL OS=Arabidopsis thaliana GN=APL
PE=2 SV=2
Length = 358
Score = 75.1 bits (183), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 44/56 (78%)
Query: 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
PRLRWT +LH FV AV +LGG +KATPK ++++M V+GL++ H+KSHLQ +R K
Sbjct: 35 PRLRWTVELHERFVDAVAQLGGPDKATPKTIMRVMGVKGLTLYHLKSHLQKFRLGK 90
>sp|Q9LZJ8|ARR20_ARATH Putative two-component response regulator ARR20 OS=Arabidopsis
thaliana GN=ARR20 PE=2 SV=1
Length = 426
Score = 65.9 bits (159), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 55/97 (56%), Gaps = 16/97 (16%)
Query: 57 EDDDKRTDHL-----EGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERL 111
E DD D+L EGS + + E+ T K PR++WTP+LH F AVE++
Sbjct: 179 EYDDLEQDNLYESNEEGSKNTCDHKEEKSPT-------KKPRMQWTPELHHKFEVAVEKM 231
Query: 112 GGQEKATPKLVLQLM----NVRGLSIAHVKSHLQMYR 144
G EKA PK +L+ M NV+GL+ +V SHLQ YR
Sbjct: 232 GSLEKAFPKTILKYMQEELNVQGLTRNNVASHLQKYR 268
>sp|Q9FFH0|GLK2_ARATH Transcription activator GLK2 OS=Arabidopsis thaliana GN=GLK2 PE=2
SV=1
Length = 386
Score = 63.2 bits (152), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 30/58 (51%), Positives = 42/58 (72%), Gaps = 1/58 (1%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
K P++ WTP+LH FV AVE+LG +KA P +L++MNV+ L+ +V SHLQ YRS +
Sbjct: 146 KKPKVDWTPELHRKFVQAVEQLG-VDKAVPSRILEIMNVKSLTRHNVASHLQKYRSHR 202
>sp|Q940D0|ARR1_ARATH Two-component response regulator ARR1 OS=Arabidopsis thaliana
GN=ARR1 PE=1 SV=2
Length = 690
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
K PR+ W+ +LH FV AV +LG EKA PK +L+LMNV GL+ +V SHLQ YR
Sbjct: 236 KKPRVVWSVELHQQFVAAVNQLG-VEKAVPKKILELMNVPGLTRENVASHLQKYR 289
>sp|Q9FGT7|ARR18_ARATH Two-component response regulator ARR18 OS=Arabidopsis thaliana
GN=ARR18 PE=2 SV=2
Length = 635
Score = 60.8 bits (146), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/66 (50%), Positives = 45/66 (68%), Gaps = 3/66 (4%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR--SKK 147
K PR+ W+ +LH FV AV++LG +KA PK +L LM++ GL+ +V SHLQ YR KK
Sbjct: 193 KKPRVVWSQELHQKFVSAVQQLG-LDKAVPKKILDLMSIEGLTRENVASHLQKYRLYLKK 251
Query: 148 LDEAGQ 153
+DE Q
Sbjct: 252 IDEGQQ 257
>sp|Q9SIV3|GLK1_ARATH Transcription activator GLK1 OS=Arabidopsis thaliana GN=GLK1 PE=2
SV=2
Length = 420
Score = 60.1 bits (144), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 67/134 (50%), Gaps = 15/134 (11%)
Query: 14 SDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCS 73
SD+++ Q E T S + E S+ DDV A+ D + S+S S
Sbjct: 90 SDKTDSQGETTKGSSGKG----------EEVVSKRDDVAAETVTYDGDSDRKRKYSSSAS 139
Query: 74 TNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSI 133
+ NN + + ++ WTP+LH FV AVE+LG +KA P +L+LM V L+
Sbjct: 140 SKNNR----ISNNEGKRKVKVDWTPELHRRFVEAVEQLG-VDKAVPSRILELMGVHCLTR 194
Query: 134 AHVKSHLQMYRSKK 147
+V SHLQ YRS +
Sbjct: 195 HNVASHLQKYRSHR 208
>sp|Q9ZWJ9|ARR2_ARATH Two-component response regulator ARR2 OS=Arabidopsis thaliana
GN=ARR2 PE=1 SV=1
Length = 664
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 39/55 (70%), Gaps = 1/55 (1%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
K PR+ W+ +LH FV AV +LG +KA PK +L++MNV GL+ +V SHLQ YR
Sbjct: 215 KKPRVVWSVELHQQFVAAVNQLG-VDKAVPKKILEMMNVPGLTRENVASHLQKYR 268
>sp|Q9M9B9|ARR19_ARATH Putative two-component response regulator ARR19 OS=Arabidopsis
thaliana GN=ARR19 PE=2 SV=2
Length = 407
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/84 (36%), Positives = 51/84 (60%), Gaps = 4/84 (4%)
Query: 64 DHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLV- 122
DH + S + + N + +Q + + PR+ WT +LH F+ A+E +GG EKA PK++
Sbjct: 189 DHFD-SITINGGNGIQNMEKKQGKKPRKPRMTWTEELHQKFLEAIEIIGGIEKANPKVLV 247
Query: 123 --LQLMNVRGLSIAHVKSHLQMYR 144
LQ M + G++ ++V SHLQ +R
Sbjct: 248 ECLQEMRIEGITRSNVASHLQKHR 271
>sp|Q8L9Y3|ARR14_ARATH Two-component response regulator ARR14 OS=Arabidopsis thaliana
GN=ARR14 PE=1 SV=2
Length = 382
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 40/56 (71%), Gaps = 1/56 (1%)
Query: 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
SK R+ W+ +LH FV+AV +LG +KA PK +L+LMNV GLS +V SHLQ +R
Sbjct: 198 SKKSRVVWSIELHQQFVNAVNKLG-IDKAVPKRILELMNVPGLSRENVASHLQKFR 252
>sp|Q5NAN5|GLK2_ORYSJ Probable transcription factor GLK2 OS=Oryza sativa subsp. japonica
GN=GLK2 PE=2 SV=1
Length = 539
Score = 54.7 bits (130), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%), Gaps = 1/55 (1%)
Query: 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147
++ WTP+LH FV AVE+LG +KA P +L+LM + L+ ++ SHLQ YRS +
Sbjct: 217 KVDWTPELHRRFVQAVEQLG-IDKAVPSRILELMGIECLTRHNIASHLQKYRSHR 270
>sp|Q6LA43|APRR2_ARATH Two-component response regulator-like APRR2 OS=Arabidopsis thaliana
GN=APRR2 PE=2 SV=2
Length = 535
Score = 54.3 bits (129), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 13/96 (13%)
Query: 49 DDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAV 108
D V ED+ K + G + S N R+ ++ WTP+LH FV AV
Sbjct: 266 DSVDIHKKEDETKPINKSSGIKNVSGNKTSRK------------KVDWTPELHKKFVQAV 313
Query: 109 ERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
E+L G ++A P +L+LM V L+ +V SHLQ +R
Sbjct: 314 EQL-GVDQAIPSRILELMKVGTLTRHNVASHLQKFR 348
>sp|O49397|ARR10_ARATH Two-component response regulator ARR10 OS=Arabidopsis thaliana
GN=ARR10 PE=1 SV=1
Length = 552
Score = 53.5 bits (127), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
K PR+ WT +LH F+ AV+ LG E+A PK +L LMNV L+ +V SHLQ +R
Sbjct: 182 KKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFR 235
>sp|P62598|ARR12_ARATH Two-component response regulator ARR12 OS=Arabidopsis thaliana
GN=ARR12 PE=2 SV=2
Length = 596
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/52 (53%), Positives = 35/52 (67%), Gaps = 1/52 (1%)
Query: 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
R+ WT +LH FV AV +LG EKA PK +L LMNV L+ +V SHLQ +R
Sbjct: 197 RVVWTVELHKKFVAAVNQLG-YEKAMPKKILDLMNVEKLTRENVASHLQKFR 247
>sp|Q9FXD6|ARR11_ARATH Two-component response regulator ARR11 OS=Arabidopsis thaliana
GN=ARR11 PE=1 SV=1
Length = 521
Score = 52.8 bits (125), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
R+ W+ +LH FV+AV ++G KA PK +L LMNV L+ +V SHLQ YR
Sbjct: 195 RVVWSFELHHKFVNAVNQIGCDHKAGPKKILDLMNVPWLTRENVASHLQKYR 246
>sp|Q7Y0W5|EHD1_ORYSJ Two-component response regulator EHD1 OS=Oryza sativa subsp.
japonica GN=EHD1 PE=1 SV=1
Length = 341
Score = 52.4 bits (124), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 74 TNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSI 133
N N + +R +S RL WT LH F+ AV LG ++KA PK +L +M V+ L+
Sbjct: 184 VNYNGEITDIRDLGKS---RLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTR 239
Query: 134 AHVKSHLQMYR 144
V SHLQ YR
Sbjct: 240 EQVASHLQKYR 250
>sp|Q7Y0W3|EHD1_ORYSI Two-component response regulator EHD1 OS=Oryza sativa subsp. indica
PE=2 SV=1
Length = 341
Score = 52.0 bits (123), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 74 TNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSI 133
N N + +R +S RL WT LH F+ AV LG ++KA PK +L +M V+ L+
Sbjct: 184 VNYNGEITDIRDLGKS---RLTWTTQLHRQFIAAVNHLG-EDKAVPKKILGIMKVKHLTR 239
Query: 134 AHVKSHLQMYR 144
V SHLQ YR
Sbjct: 240 EQVASHLQKYR 250
>sp|Q5Z5I4|GLK1_ORYSJ Probable transcription factor GLK1 OS=Oryza sativa subsp. japonica
GN=GLK1 PE=2 SV=1
Length = 455
Score = 48.9 bits (115), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 23/144 (15%)
Query: 21 AENTSVVSPQKWSCFDLNLNEE-----------ASCSEEDDVLAKAAEDDDKRTDHLEGS 69
A++ V+ P C D+ + EE C+++DD +A DD + S
Sbjct: 98 ADDVGVLDP----CGDVVVGEENAAFAGAGEEKGGCNQDDDA-GEANVDDGAAAVEAKSS 152
Query: 70 TSCSTNNNERRS------TVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVL 123
+ ST ++ + + + + K ++ WTP+LH FV AVE+L G +KA P +L
Sbjct: 153 SPSSTTSSSQEAESRHKSSSKSSHGKKKAKVDWTPELHRRFVQAVEQL-GIDKAVPSRIL 211
Query: 124 QLMNVRGLSIAHVKSHLQMYRSKK 147
++M + L+ ++ SHLQ YRS +
Sbjct: 212 EIMGIDSLTRHNIASHLQKYRSHR 235
>sp|Q9LYP5|ARR21_ARATH Putative two-component response regulator ARR21 OS=Arabidopsis
thaliana GN=ARR21 PE=2 SV=3
Length = 613
Score = 46.2 bits (108), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%), Gaps = 1/56 (1%)
Query: 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
+K +++WT LH F+ A+ +G +KA PK +L M+V L+ +V SHLQ YR
Sbjct: 220 AKKKKIQWTDSLHDLFLQAIRHIG-LDKAVPKKILAFMSVPYLTRENVASHLQKYR 274
>sp|Q9ZVD3|ARR13_ARATH Putative two-component response regulator ARR13 OS=Arabidopsis
thaliana GN=ARR13 PE=2 SV=2
Length = 572
Score = 43.9 bits (102), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 32/52 (61%), Gaps = 1/52 (1%)
Query: 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144
++ WT L F+ A++ +G +K PK +L +MNV L+ +V SHLQ YR
Sbjct: 227 KIWWTNPLQDLFLQAIQHIG-YDKVVPKKILAIMNVPYLTRENVASHLQKYR 277
>sp|Q9FJ16|APRR4_ARATH Putative two-component response regulator-like APRR4 OS=Arabidopsis
thaliana GN=APRR4 PE=3 SV=1
Length = 292
Score = 43.1 bits (100), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 41/71 (57%), Gaps = 2/71 (2%)
Query: 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM-YRSKK 147
+K R+ W +LH +F++AV+ LG E+A PK +L +M V +S +V SHLQ+ +
Sbjct: 221 AKKRRVVWDEELHQNFLNAVDFLG-LERAVPKKILDVMKVDYISRENVASHLQVTFLIYN 279
Query: 148 LDEAGQGEICF 158
+ Q CF
Sbjct: 280 IIVHFQQHFCF 290
>sp|Q9C9F6|APRR6_ARATH Putative two-component response regulator-like APRR6 OS=Arabidopsis
thaliana GN=APRR6 PE=3 SV=2
Length = 755
Score = 40.4 bits (93), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 31/51 (60%), Gaps = 1/51 (1%)
Query: 96 WTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146
W + H+ F+ A+ LG +E PK +L++MN L+ V SHLQ Y+++
Sbjct: 227 WNSERHMKFIAAISILG-EEDFRPKSILEIMNDPNLTHRQVGSHLQKYKAQ 276
>sp|A6W377|RL6_MARMS 50S ribosomal protein L6 OS=Marinomonas sp. (strain MWYL1)
GN=rplF PE=3 SV=1
Length = 177
Score = 32.7 bits (73), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
Query: 24 TSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNN 76
T VV K S + N++ S+E++V+ AA D K++ L G+T NN
Sbjct: 23 TVVVKGGKGS-LEFNIHTSVQVSKEENVITFAARDGAKQSRALAGTTRALVNN 74
>sp|A8E4V2|SLAI1_XENTR SLAIN motif-containing protein 1 OS=Xenopus tropicalis GN=slain1
PE=2 SV=2
Length = 545
Score = 31.6 bits (70), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 34/65 (52%), Gaps = 1/65 (1%)
Query: 3 TDIEIQCR-QEKSDRSEEQAENTSVVSPQKWSCFDLNLNEEASCSEEDDVLAKAAEDDDK 61
TD++I R QE+S R + +T + S F L ++ SCS + D + E+DD+
Sbjct: 249 TDVQIMARLQEESLRQDFATTSTCSSVSRPRSSFSLYSGKKLSCSSDQDSDRYSVEEDDE 308
Query: 62 RTDHL 66
DHL
Sbjct: 309 DFDHL 313
>sp|Q7SY65|K118B_XENLA Keratin, type I cytoskeletal 18-B OS=Xenopus laevis GN=krt18-b PE=2
SV=1
Length = 432
Score = 31.6 bits (70), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 9/75 (12%)
Query: 59 DDKRTDHLEGSTSCSTNNNERRSTVRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQ---- 114
+D+ +LE S T N E +RQ+ K P W+P + A+E L Q
Sbjct: 91 NDRLASYLERVRSLETANKELEVQIRQHTEKKGPAKDWSP-----YYKAIEDLKKQVFDS 145
Query: 115 EKATPKLVLQLMNVR 129
+LVLQ+ N R
Sbjct: 146 TVDNSQLVLQIDNAR 160
>sp|P11335|B_SPV4 Internal scaffolding protein ORF3 OS=Spiroplasma virus 4 GN=ORF3
PE=3 SV=1
Length = 149
Score = 30.0 bits (66), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 110 RLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEI 156
RLGG + PK VL+L N+R L S L+ S KLD+ G G++
Sbjct: 77 RLGGDDTILPKSVLELENIR-LQNTEYLSLLENINS-KLDKQGLGDL 121
>sp|Q80TH2|LAP2_MOUSE Protein LAP2 OS=Mus musculus GN=Erbb2ip PE=1 SV=3
Length = 1402
Score = 30.0 bits (66), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 3/61 (4%)
Query: 31 KWSCFDLNLNEEASCSEEDDVLAKAAEDDDKRTDHLEGSTSCSTNNNERRSTVRQYVRSK 90
K +DLN+ E+ E+D + +KA DD ++ DH+ + + NN + V + RSK
Sbjct: 726 KLPEYDLNIEEQLVLIEKD-IDSKATSDDSRQLDHINMNINKLVTNNIFQPEVME--RSK 782
Query: 91 M 91
M
Sbjct: 783 M 783
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.313 0.126 0.364
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 59,207,626
Number of Sequences: 539616
Number of extensions: 2255838
Number of successful extensions: 5434
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 5364
Number of HSP's gapped (non-prelim): 84
length of query: 161
length of database: 191,569,459
effective HSP length: 108
effective length of query: 53
effective length of database: 133,290,931
effective search space: 7064419343
effective search space used: 7064419343
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 56 (26.2 bits)