Query 035517
Match_columns 161
No_of_seqs 149 out of 315
Neff 3.5
Searched_HMMs 29240
Date Mon Mar 25 05:23:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035517.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035517hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1irz_A ARR10-B; helix-turn-hel 100.0 6.8E-31 2.3E-35 183.0 7.1 59 88-147 2-60 (64)
2 2yum_A ZZZ3 protein, zinc fing 98.1 1.1E-05 3.8E-10 55.0 7.3 55 91-148 6-63 (75)
3 2cu7_A KIAA1915 protein; nucle 98.0 2.3E-05 7.9E-10 53.3 7.3 54 91-150 7-60 (72)
4 2yus_A SWI/SNF-related matrix- 98.0 2E-05 6.8E-10 55.5 6.6 49 91-145 16-64 (79)
5 1x41_A Transcriptional adaptor 97.8 6.7E-05 2.3E-09 49.5 6.2 50 92-146 7-56 (60)
6 2cqq_A RSGI RUH-037, DNAJ homo 97.7 9.4E-05 3.2E-09 51.5 7.0 60 93-155 8-67 (72)
7 2elk_A SPCC24B10.08C protein; 97.5 0.00021 7.2E-09 46.9 5.9 49 93-145 9-57 (58)
8 2iw5_B Protein corest, REST co 97.5 0.0002 6.8E-09 60.3 6.5 52 89-146 129-180 (235)
9 2xag_B REST corepressor 1; ami 97.4 0.00024 8.1E-09 64.7 7.0 51 90-146 377-427 (482)
10 1ity_A TRF1; helix-turn-helix, 97.4 0.00062 2.1E-08 45.7 6.8 55 89-146 6-60 (69)
11 2d9a_A B-MYB, MYB-related prot 97.3 0.00077 2.6E-08 43.9 6.3 50 91-145 6-55 (60)
12 2cqr_A RSGI RUH-043, DNAJ homo 97.2 0.0008 2.7E-08 46.9 5.7 56 89-146 14-69 (73)
13 3sjm_A Telomeric repeat-bindin 97.1 0.0016 5.5E-08 43.8 6.8 49 92-143 10-58 (64)
14 1guu_A C-MYB, MYB proto-oncoge 97.1 0.0014 4.8E-08 41.4 6.0 47 93-144 3-49 (52)
15 1w0t_A Telomeric repeat bindin 97.1 0.002 6.8E-08 41.2 6.6 49 93-144 2-50 (53)
16 2din_A Cell division cycle 5-l 97.1 0.0014 4.8E-08 43.5 6.1 54 87-147 3-56 (66)
17 1gvd_A MYB proto-oncogene prot 97.0 0.0019 6.6E-08 40.9 5.8 47 93-144 3-49 (52)
18 2dim_A Cell division cycle 5-l 96.8 0.0034 1.2E-07 42.1 6.3 50 91-145 7-56 (70)
19 3zqc_A MYB3; transcription-DNA 96.7 0.0053 1.8E-07 45.4 6.9 65 86-156 47-111 (131)
20 1gv2_A C-MYB, MYB proto-oncoge 96.6 0.0048 1.6E-07 43.7 5.9 52 87-144 50-101 (105)
21 2cjj_A Radialis; plant develop 96.5 0.0047 1.6E-07 44.8 5.8 59 93-153 8-67 (93)
22 2eqr_A N-COR1, N-COR, nuclear 96.4 0.008 2.7E-07 39.7 5.9 45 90-140 9-53 (61)
23 2k9n_A MYB24; R2R3 domain, DNA 96.4 0.0074 2.5E-07 43.2 5.9 55 86-146 46-100 (107)
24 2hzd_A Transcriptional enhance 96.4 0.0031 1.1E-07 45.6 3.9 58 91-150 4-78 (82)
25 2aje_A Telomere repeat-binding 96.3 0.02 6.7E-07 42.5 7.8 54 88-144 8-63 (105)
26 2llk_A Cyclin-D-binding MYB-li 96.2 0.012 4.1E-07 40.9 5.9 52 83-141 13-64 (73)
27 1h8a_C AMV V-MYB, MYB transfor 96.1 0.011 3.8E-07 43.3 5.8 52 87-144 73-124 (128)
28 3osg_A MYB21; transcription-DN 95.9 0.019 6.3E-07 42.3 6.4 52 88-145 6-57 (126)
29 1h8a_C AMV V-MYB, MYB transfor 95.9 0.021 7.2E-07 41.8 6.5 56 85-145 19-74 (128)
30 2ltp_A Nuclear receptor corepr 94.9 0.0014 4.6E-08 46.6 0.0 49 92-146 15-63 (89)
31 3osg_A MYB21; transcription-DN 95.8 0.017 5.9E-07 42.5 5.8 54 87-146 56-109 (126)
32 1gv2_A C-MYB, MYB proto-oncoge 95.8 0.02 6.8E-07 40.4 5.8 47 93-144 4-50 (105)
33 1h89_C C-MYB, MYB proto-oncoge 95.8 0.017 5.9E-07 43.7 5.8 54 86-145 103-156 (159)
34 2yqk_A Arginine-glutamic acid 95.6 0.042 1.4E-06 36.6 6.6 47 89-140 5-51 (63)
35 2k9n_A MYB24; R2R3 domain, DNA 95.0 0.057 1.9E-06 38.5 6.0 46 94-144 2-47 (107)
36 1h89_C C-MYB, MYB proto-oncoge 94.9 0.051 1.7E-06 41.1 5.8 54 86-144 51-104 (159)
37 2roh_A RTBP1, telomere binding 94.9 0.1 3.4E-06 39.7 7.4 54 88-144 26-81 (122)
38 4eef_G F-HB80.4, designed hema 94.6 0.013 4.4E-07 41.7 1.7 46 95-142 22-67 (74)
39 1wgx_A KIAA1903 protein; MYB D 94.6 0.075 2.6E-06 37.2 5.6 47 95-143 10-56 (73)
40 2ckx_A NGTRF1, telomere bindin 94.2 0.12 4.2E-06 36.5 6.2 47 95-144 2-50 (83)
41 2juh_A Telomere binding protei 94.1 0.088 3E-06 40.0 5.5 54 88-144 12-67 (121)
42 3zqc_A MYB3; transcription-DNA 94.1 0.06 2.1E-06 39.7 4.4 48 93-145 2-49 (131)
43 1x58_A Hypothetical protein 49 92.5 0.45 1.6E-05 32.6 6.5 47 92-145 7-54 (62)
44 2crg_A Metastasis associated p 91.5 0.48 1.6E-05 32.1 5.8 45 91-140 6-50 (70)
45 4a69_C Nuclear receptor corepr 89.9 0.58 2E-05 33.5 5.2 43 91-139 41-83 (94)
46 1ign_A Protein (RAP1); RAP1,ye 81.7 1.7 5.8E-05 36.7 4.7 55 92-148 7-63 (246)
47 4b4c_A Chromodomain-helicase-D 75.0 4.3 0.00015 31.3 4.9 57 89-146 3-59 (211)
48 2li6_A SWI/SNF chromatin-remod 73.1 1.1 3.7E-05 32.7 1.0 43 98-143 49-95 (116)
49 2jxj_A Histone demethylase jar 71.6 2.3 7.7E-05 29.7 2.3 42 99-143 37-82 (96)
50 2lm1_A Lysine-specific demethy 70.4 2.7 9.2E-05 29.8 2.6 42 98-142 44-89 (107)
51 2cxy_A BAF250B subunit, HBAF25 67.9 3 0.0001 30.7 2.4 41 99-142 52-96 (125)
52 1qgp_A Protein (double strande 67.6 9.3 0.00032 25.7 4.7 48 94-144 9-56 (77)
53 2eqy_A RBP2 like, jumonji, at 67.5 5.4 0.00018 29.3 3.8 44 99-143 43-92 (122)
54 2jrz_A Histone demethylase jar 64.2 4.1 0.00014 29.7 2.5 44 99-143 41-90 (117)
55 1c20_A DEAD ringer protein; DN 62.8 5.8 0.0002 29.2 3.1 44 99-143 53-103 (128)
56 2kk0_A AT-rich interactive dom 58.8 6.5 0.00022 29.8 2.8 44 99-143 65-115 (145)
57 1ig6_A MRF-2, modulator recogn 58.1 3 0.0001 29.7 0.8 45 98-143 33-84 (107)
58 3b73_A PHIH1 repressor-like pr 57.6 19 0.00064 26.1 5.1 49 94-146 8-56 (111)
59 2p7v_B Sigma-70, RNA polymeras 53.5 28 0.00096 21.7 4.9 38 106-146 15-52 (68)
60 1ku3_A Sigma factor SIGA; heli 51.9 35 0.0012 21.5 5.2 43 101-146 15-57 (73)
61 1ofc_X ISWI protein; nuclear p 47.2 25 0.00086 30.1 5.0 48 95-147 112-159 (304)
62 3hm5_A DNA methyltransferase 1 46.6 49 0.0017 23.8 5.7 42 94-139 31-75 (93)
63 1tty_A Sigma-A, RNA polymerase 46.3 45 0.0015 21.9 5.2 40 104-146 26-65 (87)
64 1kkx_A Transcription regulator 44.2 9.5 0.00033 28.2 1.7 43 99-144 49-95 (123)
65 2jn6_A Protein CGL2762, transp 39.6 57 0.0019 21.5 4.9 49 92-146 2-50 (97)
66 2rq5_A Protein jumonji; develo 39.2 39 0.0013 25.0 4.3 44 99-143 43-93 (121)
67 1tc3_C Protein (TC3 transposas 36.3 53 0.0018 17.8 5.1 41 97-145 7-47 (51)
68 3t72_q RNA polymerase sigma fa 32.8 83 0.0028 22.0 5.1 29 111-142 34-62 (99)
69 1ug2_A 2610100B20RIK gene prod 32.6 1.2E+02 0.004 22.3 5.9 50 91-143 31-80 (95)
70 1xmk_A Double-stranded RNA-spe 31.9 52 0.0018 22.6 3.8 41 99-145 11-52 (79)
71 2jpc_A SSRB; DNA binding prote 30.8 52 0.0018 19.6 3.3 27 117-146 14-40 (61)
72 1x3u_A Transcriptional regulat 29.0 1.1E+02 0.0036 19.0 5.0 28 116-146 31-58 (79)
73 1ntc_A Protein (nitrogen regul 28.0 97 0.0033 20.8 4.6 37 102-145 54-90 (91)
74 2o8x_A Probable RNA polymerase 26.5 1.1E+02 0.0037 18.3 4.6 28 117-147 32-59 (70)
75 2da6_A Hepatocyte nuclear fact 26.4 42 0.0014 24.4 2.6 58 88-146 5-81 (102)
76 3mzy_A RNA polymerase sigma-H 24.6 1.3E+02 0.0044 20.4 4.8 27 117-146 125-151 (164)
77 2dmn_A Homeobox protein TGIF2L 24.5 1.5E+02 0.0051 19.7 5.0 59 89-147 7-65 (83)
78 2g7r_A Mucosa-associated lymph 24.2 30 0.001 26.3 1.5 48 92-143 56-104 (117)
79 2elh_A CG11849-PA, LD40883P; s 23.5 1.6E+02 0.0055 19.2 6.5 48 91-146 18-65 (87)
80 3hug_A RNA polymerase sigma fa 23.3 1.4E+02 0.0046 19.5 4.6 27 117-146 54-80 (92)
81 2kt0_A Nanog, homeobox protein 23.1 1.6E+02 0.0055 19.2 7.2 56 88-146 21-76 (84)
82 3e7l_A Transcriptional regulat 23.0 1.4E+02 0.0049 18.5 4.9 37 103-146 23-59 (63)
83 1je8_A Nitrate/nitrite respons 22.8 1.2E+02 0.0042 19.6 4.2 43 95-146 21-63 (82)
84 1qbj_A Protein (double-strande 22.7 1.8E+02 0.0062 19.6 5.8 45 97-144 8-52 (81)
85 3c57_A Two component transcrip 22.5 89 0.003 20.9 3.6 27 117-146 43-69 (95)
86 2da3_A Alpha-fetoprotein enhan 22.2 1.6E+02 0.0056 18.9 5.9 56 88-146 16-71 (80)
87 2ebi_A DNA binding protein GT- 22.2 78 0.0027 21.1 3.2 49 91-139 2-58 (86)
88 2e1o_A Homeobox protein PRH; D 22.1 1.6E+02 0.0054 18.7 5.2 55 89-146 7-61 (70)
89 1fse_A GERE; helix-turn-helix 21.7 1.1E+02 0.0039 18.5 3.7 44 94-146 10-53 (74)
90 1umq_A Photosynthetic apparatu 21.6 1.4E+02 0.0047 20.4 4.4 37 102-145 44-80 (81)
91 2cuf_A FLJ21616 protein; homeo 20.0 1.8E+02 0.0063 19.6 4.8 55 89-146 7-76 (95)
No 1
>1irz_A ARR10-B; helix-turn-helix, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.11
Probab=99.97 E-value=6.8e-31 Score=183.01 Aligned_cols=59 Identities=47% Similarity=0.743 Sum_probs=56.1
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk 147 (161)
..+|+|++||+|||++||+||++|| .++|+||.||++|+|+|||+.||+|||||||++.
T Consensus 2 ~~~k~r~~WT~elH~~Fv~Av~~LG-~~~AtPk~Il~~M~v~gLT~~~VkSHLQKYR~~l 60 (64)
T 1irz_A 2 AQKKPRVLWTHELHNKFLAAVDHLG-VERAVPKKILDLMNVDKLTRENVASHLQKFRVAL 60 (64)
T ss_dssp CCCCSSCSSCHHHHHHHHHHHHHHC-TTTCCHHHHHHHHCCTTCCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCcCCHHHHHHHHHHHHHhC-CCCCCcHHHHHHcCCCCCCHHHHHHHHHHHHHHH
Confidence 3689999999999999999999999 7999999999999999999999999999999864
No 2
>2yum_A ZZZ3 protein, zinc finger ZZ-type-containing protein 3; transcription, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.10 E-value=1.1e-05 Score=54.98 Aligned_cols=55 Identities=15% Similarity=0.121 Sum_probs=46.6
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCC---CchHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEK---ATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKL 148 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~k---AtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~ 148 (161)
..+-.||+|.+..|++||..+|. +. -.|..|.+.|+ +.|..||+.|.|+|-.+..
T Consensus 6 ~~~~~WT~eEd~~L~~~v~~~g~-~~~~~~~W~~IA~~~~--~Rt~~qcr~r~~~~l~~~~ 63 (75)
T 2yum_A 6 SGNQLWTVEEQKKLEQLLIKYPP-EEVESRRWQKIADELG--NRTAKQVASQVQKYFIKLT 63 (75)
T ss_dssp CCSSCCCHHHHHHHHHHHHHSCC-CSCHHHHHHHHHHHHS--SSCHHHHHHHHHHHHGGGS
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC-CCCCcccHHHHHHHhC--CCCHHHHHHHHHHHHHHHH
Confidence 34568999999999999999992 22 47999999985 6999999999999987654
No 3
>2cu7_A KIAA1915 protein; nuclear protein, SANT domain, DNA binding, regulation of transcription, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=98.00 E-value=2.3e-05 Score=53.31 Aligned_cols=54 Identities=19% Similarity=0.272 Sum_probs=47.2
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccc
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDE 150 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e 150 (161)
..+-.||+|.+..|+.||..+|- .|..|..+| ||.|..+|+.|.++|..+....
T Consensus 7 ~~~~~WT~eEd~~l~~~~~~~G~----~W~~Ia~~~--~~Rt~~q~k~r~~~~l~~~~~~ 60 (72)
T 2cu7_A 7 GYSVKWTIEEKELFEQGLAKFGR----RWTKISKLI--GSRTVLQVKSYARQYFKNKVKC 60 (72)
T ss_dssp SCCCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHHHSCS
T ss_pred cCCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHHhc
Confidence 34678999999999999999993 899999987 5799999999999997766554
No 4
>2yus_A SWI/SNF-related matrix-associated actin- dependent regulator of chromatin subfamily...; SWI/SNF complex 155 kDa subunit, BRG1-associated factor 155; NMR {Homo sapiens}
Probab=97.96 E-value=2e-05 Score=55.50 Aligned_cols=49 Identities=14% Similarity=0.096 Sum_probs=44.0
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
..+-.||++.+.+|++||+.+|+ .|+.|.++|+ +.|..||+.|.++|-+
T Consensus 16 ~~~~~WT~eEd~~Ll~~v~~~G~----~W~~IA~~v~--~RT~~qcr~r~~~~~i 64 (79)
T 2yus_A 16 SAGREWTEQETLLLLEALEMYKD----DWNKVSEHVG--SRTQDECILHFLRLPI 64 (79)
T ss_dssp CCSCCCCHHHHHHHHHHHHHSSS----CHHHHHHHHS--SCCHHHHHHHHTTSCC
T ss_pred ccCCCcCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHHHhcc
Confidence 34678999999999999999994 8999999986 5999999999999844
No 5
>1x41_A Transcriptional adaptor 2-like, isoform B; transcriptional adaptor protein2, transcriptional activation, MYB domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=97.77 E-value=6.7e-05 Score=49.49 Aligned_cols=50 Identities=20% Similarity=0.180 Sum_probs=43.4
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+-.||++...++++||..+|- ..|+.|.+.| ++.|..|++.|-++|-..
T Consensus 7 ~~~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~r~~~~l~~ 56 (60)
T 1x41_A 7 GDPSWTAQEEMALLEAVMDCGF---GNWQDVANQM--CTKTKEECEKHYMKYFSG 56 (60)
T ss_dssp CCSSSCHHHHHHHHHHHHHTCT---TCHHHHHHHH--TTSCHHHHHHHHHHHTTC
T ss_pred CCCCCCHHHHHHHHHHHHHHCc---CcHHHHHHHh--CCCCHHHHHHHHHHHccC
Confidence 4567999999999999999992 2799999999 579999999999988653
No 6
>2cqq_A RSGI RUH-037, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.74 E-value=9.4e-05 Score=51.46 Aligned_cols=60 Identities=12% Similarity=0.186 Sum_probs=50.1
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccccCCCc
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGE 155 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e~g~~~ 155 (161)
.-.||.+.+..|..||..+++...-.|.+|.+.| |.|..+|+.|.+++......++|.+-
T Consensus 8 ~~~WT~eE~k~fe~al~~~p~~t~~RW~~IA~~l---gRt~~eV~~~y~~L~~d~~~~~G~vp 67 (72)
T 2cqq_A 8 APEWTEEDLSQLTRSMVKFPGGTPGRWEKIAHEL---GRSVTDVTTKAKQLKDSVTCSPGMVS 67 (72)
T ss_dssp CCCCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHH---TSCHHHHHHHHHHHHHSCCCCSCCCS
T ss_pred CCCCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHh---CCCHHHHHHHHHHHHHhcCccCCCCC
Confidence 4479999999999999999854445688999998 59999999999999777666777653
No 7
>2elk_A SPCC24B10.08C protein; hypothetical protein, structural genomics, NPPSFA; NMR {Schizosaccharomyces pombe}
Probab=97.53 E-value=0.00021 Score=46.95 Aligned_cols=49 Identities=16% Similarity=0.174 Sum_probs=42.6
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
+-.||++...++++||+.+|- ..|+.|.+.|+. +.|..|++.|-++|.+
T Consensus 9 ~~~WT~eED~~L~~~v~~~G~---~~W~~IA~~~~~-~Rt~~qcr~r~~~~~~ 57 (58)
T 2elk_A 9 DENWGADEELLLIDACETLGL---GNWADIADYVGN-ARTKEECRDHYLKTYI 57 (58)
T ss_dssp CCCCCHHHHHHHHHHHHHTTT---TCHHHHHHHHCS-SCCHHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHHCC-CCCHHHHHHHHHHHcc
Confidence 446999999999999999992 289999999963 6999999999998864
No 8
>2iw5_B Protein corest, REST corepressor 1; oxidoreductase-transcription regulator complex, oxidoreductase/repressor complex, histone demethylase, FAD; HET: FAD; 2.57A {Homo sapiens} SCOP: a.4.1.3 PDB: 2uxn_B* 2uxx_B* 2y48_B* 2v1d_B* 2x0l_B*
Probab=97.46 E-value=0.0002 Score=60.34 Aligned_cols=52 Identities=23% Similarity=0.411 Sum_probs=46.0
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
..+..-+||++.+..|++|+..+|. .|..|.++|+ +.|..||++|.++||.+
T Consensus 129 ~~k~s~~WTeEE~~lFleAl~kYGK----DW~~IAk~Vg--TKT~~QcKnfY~~~kKR 180 (235)
T 2iw5_B 129 IQKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIG--NKSVVQVKNFFVNYRRR 180 (235)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHHSS----CHHHHHHHHS--SCCHHHHHHHHHHTTTT
T ss_pred CCccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHcC--CCCHHHHHHHHHHHHHH
Confidence 3356789999999999999999994 6999999965 59999999999999875
No 9
>2xag_B REST corepressor 1; amine oxidase, chromatin regulator, histone inhibitor binding, methylation, nucleosome core, oxidoreductase; HET: FAD TCF; 3.10A {Homo sapiens} PDB: 2xaf_B* 2xah_B* 2xaj_B* 2xaq_B* 2xas_B*
Probab=97.43 E-value=0.00024 Score=64.72 Aligned_cols=51 Identities=24% Similarity=0.414 Sum_probs=46.4
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+...+||++.|..|++||..+|. .|..|.++++. -|..||++|.++||.+
T Consensus 377 ~~~~~~WT~eE~~~f~~al~~yGk----dw~~IA~~VgT--KT~~Qvk~fy~~~kkr 427 (482)
T 2xag_B 377 QKCNARWTTEEQLLAVQAIRKYGR----DFQAISDVIGN--KSVVQVKNFFVNYRRR 427 (482)
T ss_dssp CCCCSCCCHHHHHHHHHHHHHHTT----CHHHHHHHHSS--CCHHHHHHHHHHTTTT
T ss_pred cccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHhCC--CCHHHHHHHHHHHHHH
Confidence 346789999999999999999994 79999999887 8999999999999875
No 10
>1ity_A TRF1; helix-turn-helix, telomeres, DNA binding, MYB domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: a.4.1.4 PDB: 1iv6_A
Probab=97.36 E-value=0.00062 Score=45.72 Aligned_cols=55 Identities=11% Similarity=0.131 Sum_probs=47.3
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
++++|-.||++.-...+.+|+.+|. -.|..|...|+..+.|-.|++-+-..|-..
T Consensus 6 ~~~~r~~WT~eED~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~l~p 60 (69)
T 1ity_A 6 RARKRQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMKKL 60 (69)
T ss_dssp CSSSCCCCCHHHHHHHHHHHHHHCS---SCHHHHHHHSCCSSCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCC---CcHHHHHHHcCcCCCCHHHHHHHHHHHcCC
Confidence 4567889999999999999999992 289999999976689999999988877543
No 11
>2d9a_A B-MYB, MYB-related protein B; DNA binding, structural genomics, unknown function, NPPSFA; NMR {Mus musculus}
Probab=97.28 E-value=0.00077 Score=43.92 Aligned_cols=50 Identities=12% Similarity=0.135 Sum_probs=43.3
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
..+-.||+|....++++|..+|- ..|..|...| ++.|..|++.|-++|-.
T Consensus 6 ~~k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 55 (60)
T 2d9a_A 6 SGKVKWTHEEDEQLRALVRQFGQ---QDWKFLASHF--PNRTDQQCQYRWLRVLS 55 (60)
T ss_dssp CCCSCCCHHHHHHHHHHHHHTCT---TCHHHHHHHC--SSSCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--cCCCHHHHHHHHHHHcC
Confidence 45778999999999999999992 2799999997 57999999999888744
No 12
>2cqr_A RSGI RUH-043, DNAJ homolog subfamily C member 1; membrane protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=97.15 E-value=0.0008 Score=46.88 Aligned_cols=56 Identities=9% Similarity=0.079 Sum_probs=44.1
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
+...+-.||++....|+.||..+|....-.|..|..+| ||.|..+|+.|.+.+...
T Consensus 14 ~~~~~~~WT~eEd~~L~~al~~~g~~~~~rW~~IA~~v--pGRT~~qcr~Ry~~L~~d 69 (73)
T 2cqr_A 14 ARSAEEPWTQNQQKLLELALQQYPRGSSDCWDKIARCV--PSKSKEDCIARYKLLVSG 69 (73)
T ss_dssp TTCSSCCCCHHHHHHHHHHHHHSCSSSHHHHHHHGGGC--SSSCHHHHHHHHHHHHSS
T ss_pred cccCCCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHc--CCCCHHHHHHHHHHHHHc
Confidence 33445679999999999999999832223577898887 489999999999887543
No 13
>3sjm_A Telomeric repeat-binding factor 2; human telomeric repeat binding protein 2, telomere, telomeri homeodomain proteins amino acid sequence; HET: DNA; 1.35A {Homo sapiens} PDB: 1xg1_A 1vfc_A 1vf9_A 1w0u_A
Probab=97.12 E-value=0.0016 Score=43.84 Aligned_cols=49 Identities=10% Similarity=0.134 Sum_probs=42.2
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
.|-.||+|.-...+++|..+|. -.|+.|++.+.+.+.|-.|++-+-..|
T Consensus 10 kk~~WT~eED~~L~~~V~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~nl 58 (64)
T 3sjm_A 10 KKQKWTVEESEWVKAGVQKYGE---GNWAAISKNYPFVNRTAVMIKDRWRTM 58 (64)
T ss_dssp CCCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHccCC---CchHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 4668999999999999999992 269999999988899999999765544
No 14
>1guu_A C-MYB, MYB proto-oncogene protein; transcription, transcription regulation, DNA binding, ION bindi proto-oncogene, nuclear protein, activator; 1.6A {Mus musculus} SCOP: a.4.1.3 PDB: 1mbe_A 1mbf_A
Probab=97.09 E-value=0.0014 Score=41.43 Aligned_cols=47 Identities=17% Similarity=0.220 Sum_probs=41.2
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
+-.||++....++++|..+|. ..|+.|...| ++.|..|++.|-++|-
T Consensus 3 ~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1guu_A 3 KTRWTREEDEKLKKLVEQNGT---DDWKVIANYL--PNRTDVQCQHRWQKVL 49 (52)
T ss_dssp CCCCCHHHHHHHHHHHHHHCS---SCHHHHHHTS--TTCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CCHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 568999999999999999983 3799999997 5799999999988763
No 15
>1w0t_A Telomeric repeat binding factor 1; telomere, DNA-binding protein, homeodomain, mitosis, cell cycle; 2.00A {Homo sapiens} SCOP: a.4.1.4 PDB: 1ba5_A
Probab=97.08 E-value=0.002 Score=41.16 Aligned_cols=49 Identities=12% Similarity=0.180 Sum_probs=42.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
|-.||+|.....+++|..+|. ..|..|...|+..+.|-.|++-+-..|-
T Consensus 2 r~~WT~eEd~~L~~~v~~~G~---~~W~~Ia~~~~~~~Rt~~qcr~Rw~~~~ 50 (53)
T 1w0t_A 2 RQAWLWEEDKNLRSGVRKYGE---GNWSKILLHYKFNNRTSVMLKDRWRTMK 50 (53)
T ss_dssp CCCCCHHHHHHHHHHHHHHCT---TCHHHHHHHSCCSSCCHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 568999999999999999992 2799999999766899999998766653
No 16
>2din_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.07 E-value=0.0014 Score=43.48 Aligned_cols=54 Identities=13% Similarity=0.241 Sum_probs=45.7
Q ss_pred ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517 87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147 (161)
Q Consensus 87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk 147 (161)
..+...+-.||+|....++.+|..+|. .|..|..++ |.|-.||+.|-+.|-...
T Consensus 3 L~P~~~k~~WT~eED~~L~~~~~~~g~----~W~~Ia~~~---gRt~~qcr~Rw~~~l~~~ 56 (66)
T 2din_A 3 SGSSGKKTEWSREEEEKLLHLAKLMPT----QWRTIAPII---GRTAAQCLEHYEFLLDKA 56 (66)
T ss_dssp CSSSSSCCCCCHHHHHHHHHHHHHCTT----CHHHHHHHH---SSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHcCC----CHHHHhccc---CcCHHHHHHHHHHHhChH
Confidence 345566788999999999999999983 899999965 499999999999986543
No 17
>1gvd_A MYB proto-oncogene protein; transcription, transcription regulation, C-MYB, DNA binding, ION binding, nuclear protein; 1.45A {Mus musculus} SCOP: a.4.1.3 PDB: 1gv5_A 1mbg_A 1mbh_A
Probab=96.98 E-value=0.0019 Score=40.87 Aligned_cols=47 Identities=11% Similarity=0.207 Sum_probs=41.0
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
+-.||++....++.+|..+|. ..+..|...| +|.|..|++.|-+.|-
T Consensus 3 k~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~L 49 (52)
T 1gvd_A 3 KGPWTKEEDQRLIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 49 (52)
T ss_dssp CCSCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHHCc---ChHHHHHHHc--CCCCHHHHHHHHHHHc
Confidence 567999999999999999993 2699999997 5899999999988773
No 18
>2dim_A Cell division cycle 5-like protein; MYB_DNA-binding domain, cell cycle, DNA binding, spliceosome, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.83 E-value=0.0034 Score=42.06 Aligned_cols=50 Identities=14% Similarity=0.074 Sum_probs=43.5
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
..+-.||++....++.+|..+|- ..|+.|...|+ +.|..|++-|-..|-.
T Consensus 7 ~k~~~Wt~eED~~L~~~v~~~G~---~~W~~Ia~~l~--~Rt~~qcr~Rw~~~L~ 56 (70)
T 2dim_A 7 GKGGVWRNTEDEILKAAVMKYGK---NQWSRIASLLH--RKSAKQCKARWYEWLD 56 (70)
T ss_dssp STTCCCCHHHHHHHHHHHHHTCS---SCHHHHHHHST--TCCHHHHHHHHHHTSC
T ss_pred CCCCCCCHHHHHHHHHHHHHHCc---CCHHHHHHHhc--CCCHHHHHHHHHHHcC
Confidence 45778999999999999999992 27999999986 7999999999888744
No 19
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=96.66 E-value=0.0053 Score=45.44 Aligned_cols=65 Identities=15% Similarity=0.269 Sum_probs=51.4
Q ss_pred eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhccccccCCCcc
Q 035517 86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKKLDEAGQGEI 156 (161)
Q Consensus 86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk~~e~g~~~~ 156 (161)
|..+...+-.||++....++.+|..+|. .|..|..+| ||.|..+|+.|...|-.+.+........
T Consensus 47 ~l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~l~~~~~~~~~~~~ 111 (131)
T 3zqc_A 47 HLDPAVVKHAWTPEEDETIFRNYLKLGS----KWSVIAKLI--PGRTDNAIKNRWNSSISKRISTNSNHKE 111 (131)
T ss_dssp HTSTTCCCSCCCHHHHHHHHHHHHHSCS----CHHHHTTTS--TTCCHHHHHHHHHHTTGGGCCCCTTSCC
T ss_pred ccCccccCCCCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHHHhhcCCCccc
Confidence 3444555668999999999999999995 699999876 5899999999998887776654444333
No 20
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=96.57 E-value=0.0048 Score=43.70 Aligned_cols=52 Identities=19% Similarity=0.302 Sum_probs=43.6
Q ss_pred ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
..+...+-.||++....++.+|..+|. .+..|..+| ||.|..+|+.|...+-
T Consensus 50 l~p~~~~~~Wt~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~~~ 101 (105)
T 1gv2_A 50 LNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTM 101 (105)
T ss_dssp TCCCCCCCCCCHHHHHHHHHHHHHHSS----CHHHHHTTC--TTCCHHHHHHHHHHHT
T ss_pred cCCcccccCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHHHHHH
Confidence 344455778999999999999999994 799999875 7899999999977653
No 21
>2cjj_A Radialis; plant development, DNA-binding protein, MYB transcription FA DNA-binding, nuclear protein, floral asymmetry; 1.9A {Antirrhinum majus} SCOP: a.4.1.3
Probab=96.54 E-value=0.0047 Score=44.78 Aligned_cols=59 Identities=17% Similarity=0.223 Sum_probs=46.3
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc-ccccCC
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK-LDEAGQ 153 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk-~~e~g~ 153 (161)
.-.||.+....|+.||..+|....-.|..|..+|+ |.|..+|+.|-+.+.... .-++|.
T Consensus 8 ~~~WT~eEd~~L~~al~~~~~~~~~rW~~IA~~vp--GRT~~q~k~ry~~l~~dv~~iesg~ 67 (93)
T 2cjj_A 8 GRPWSAKENKAFERALAVYDKDTPDRWANVARAVE--GRTPEEVKKHYEILVEDIKYIESGK 67 (93)
T ss_dssp CCSCCHHHHHHHHHHHHHSCTTCTTHHHHHHHHST--TCCHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHcC--CCCHHHHHHHHHHHHHHHHHhhcCC
Confidence 34699999999999999998322346889999984 899999999999886543 334554
No 22
>2eqr_A N-COR1, N-COR, nuclear receptor corepressor 1; SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=96.42 E-value=0.008 Score=39.73 Aligned_cols=45 Identities=11% Similarity=0.019 Sum_probs=37.9
Q ss_pred CCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517 90 KMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL 140 (161)
Q Consensus 90 Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL 140 (161)
++..-.||++.|..|++|+..+|. .+..|..+| |+.|..+|..|-
T Consensus 9 r~~~~~WT~eE~~~F~~~~~~~gk----~w~~Ia~~l--~~rt~~~~v~~Y 53 (61)
T 2eqr_A 9 RQFMNVWTDHEKEIFKDKFIQHPK----NFGLIASYL--ERKSVPDCVLYY 53 (61)
T ss_dssp CSCCCSCCHHHHHHHHHHHHHSTT----CHHHHHHHC--TTSCHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHc--CCCCHHHHHHHH
Confidence 345678999999999999999983 799999775 579999998653
No 23
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=96.36 E-value=0.0074 Score=43.23 Aligned_cols=55 Identities=11% Similarity=0.285 Sum_probs=45.7
Q ss_pred eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
|..+...+-.||++....++.+|..+|. .+..|...| ||.|..+|+.|...+..+
T Consensus 46 ~L~p~i~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~r~ 100 (107)
T 2k9n_A 46 YINPALRTDPWSPEEDMLLDQKYAEYGP----KWNKISKFL--KNRSDNNIRNRWMMIARH 100 (107)
T ss_dssp HSSSCCTTCCCCHHHHHHHHHHHHHTCS----CHHHHHHHH--SSSCHHHHHHHHHHHHHH
T ss_pred HHcccccccccCHHHHHHHHHHHHHhCc----CHHHHHHHC--CCCCHHHHHHHHHHHHhh
Confidence 3444555778999999999999999994 799999987 689999999998766543
No 24
>2hzd_A Transcriptional enhancer factor TEF-1; DNA-binding, helix-turn-helix, gene regulation; NMR {Homo sapiens}
Probab=96.35 E-value=0.0031 Score=45.56 Aligned_cols=58 Identities=22% Similarity=0.351 Sum_probs=39.3
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHH--------------hcC---CCCCCHHHHHHHhhhhhhccccc
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQ--------------LMN---VRGLSIAHVKSHLQMYRSKKLDE 150 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILe--------------lM~---v~gLT~~~VkSHLQKYR~kk~~e 150 (161)
...-+|.++|-..|++|+..+- +.. +.|.+|. .+- -.-.|+.||.||||.-+..+..+
T Consensus 4 ~~e~vW~~~lE~aF~eaL~~yp-~~g-~~k~~ls~~gk~~gRNelIs~yI~~~tGk~RtrKQVSShiQvlk~~~~~~ 78 (82)
T 2hzd_A 4 DAEGVWSPDIEQSFQEALSIYP-PCG-RRKIILSDEGKMYGRNELIARYIKLRTGKTRTRKQVSSHIQVLARRKSRD 78 (82)
T ss_dssp GGSCCSCHHHHHHHHHHHHHSC-SSS-CCCCCHHHHCCCCCTHHHHHHHHHHHHSCCCCSHHHHHHHHHHHHHHTTC
T ss_pred CcCCcCCHHHHHHHHHHHHHcC-CCC-ccceeecccccccchhHHHHHHHHHHHcccCCccchhHHHHHHHHHHhhh
Confidence 3466899999999999999874 111 2222221 111 14589999999999988765543
No 25
>2aje_A Telomere repeat-binding protein; DNA-binding, Trp, MYB motif, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: a.4.1.3
Probab=96.25 E-value=0.02 Score=42.52 Aligned_cols=54 Identities=17% Similarity=0.081 Sum_probs=44.8
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR 144 (161)
..+++|-.||+|.-...+++|+.+|.. .|+.|+..+. .++.|-.+++.+...+-
T Consensus 8 ~~rr~r~~WT~EEd~~L~~gV~k~G~g---~W~~I~~~~~~~f~~RT~v~lKdrWrnll 63 (105)
T 2aje_A 8 PQRRIRRPFSVAEVEALVQAVEKLGTG---RWRDVKLCAFEDADHRTYVDLKDKWKTLV 63 (105)
T ss_dssp -CCCCCCSCCHHHHHHHHHHHHHHCSS---SHHHHHSSSSSSTTCCCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCCC---ChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 356789999999999999999999932 7999999773 48999999997765554
No 26
>2llk_A Cyclin-D-binding MYB-like transcription factor 1; helix bundle, SGC, structural genomics consortium, NESG, NOR structural genomics consortium; NMR {Homo sapiens}
Probab=96.15 E-value=0.012 Score=40.92 Aligned_cols=52 Identities=13% Similarity=0.081 Sum_probs=42.1
Q ss_pred eeeeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhh
Q 035517 83 VRQYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQ 141 (161)
Q Consensus 83 vr~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQ 141 (161)
+..|..+...+-.||+|.-..++++|..+|. .|..|...| |.|-.+|+.+..
T Consensus 13 ~~~~ldP~i~k~~wT~EED~~L~~l~~~~G~----kW~~IA~~l---gRt~~q~knRw~ 64 (73)
T 2llk_A 13 NLYFQGDRNHVGKYTPEEIEKLKELRIKHGN----DWATIGAAL---GRSASSVKDRCR 64 (73)
T ss_dssp ------CCCCCCSSCHHHHHHHHHHHHHHSS----CHHHHHHHH---TSCHHHHHHHHH
T ss_pred eeeecCCCCCCCCCCHHHHHHHHHHHHHHCC----CHHHHHHHh---CCCHHHHHHHHH
Confidence 4456677788899999999999999999993 599999999 799999999865
No 27
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=96.08 E-value=0.011 Score=43.31 Aligned_cols=52 Identities=21% Similarity=0.304 Sum_probs=43.7
Q ss_pred ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
..+...+-.||+|....++.+|..+|. .|..|..+| ||.|..+|+.|...+-
T Consensus 73 l~p~~~~~~WT~eEd~~L~~~~~~~G~----~W~~Ia~~l--~gRt~~~~k~r~~~~~ 124 (128)
T 1h8a_C 73 LNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAVKNHWNSTM 124 (128)
T ss_dssp TCSSSCCSCCCHHHHHHHHHHHHHHCS----CHHHHGGGS--TTCCHHHHHHHHHTTT
T ss_pred cccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHC--CCCCHHHHHHHHHHHH
Confidence 344455778999999999999999994 799999986 6899999999976553
No 28
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.93 E-value=0.019 Score=42.31 Aligned_cols=52 Identities=13% Similarity=0.215 Sum_probs=44.1
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
.....+..||+|.-.+.+.+|..+|. .|+.|.+.|+ +.|..|++.+-..|-.
T Consensus 6 ~~~~kk~~WT~eED~~L~~~v~~~G~----~W~~Ia~~~~--~Rt~~qcr~Rw~~~l~ 57 (126)
T 3osg_A 6 LKAAKKQKFTPEEDEMLKRAVAQHGS----DWKMIAATFP--NRNARQCRDRWKNYLA 57 (126)
T ss_dssp -CBCSSCCCCHHHHHHHHHHHHHHTT----CHHHHHHTCT--TCCHHHHHHHHHHHTS
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHhCC----CHHHHHHHcC--CCCHHHHHHHHhhhcc
Confidence 34566889999999999999999983 7999999874 7999999998887753
No 29
>1h8a_C AMV V-MYB, MYB transforming protein; transcription/DNA; 2.23A {Avian myeloblastosis virus} SCOP: a.4.1.3 a.4.1.3
Probab=95.90 E-value=0.021 Score=41.84 Aligned_cols=56 Identities=9% Similarity=0.170 Sum_probs=45.1
Q ss_pred eeecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 85 QYVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 85 ~~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
.+..+...+-.||+|....++.+|..+|. -.|..|...| ||.|..+++.|-..|-.
T Consensus 19 ~~l~p~~~k~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l~ 74 (128)
T 1h8a_C 19 KVLNPELNKGPWTKEEDQRVIEHVQKYGP---KRWSDIAKHL--KGRIGKQCRERWHNHLN 74 (128)
T ss_dssp ---CTTCCCSCCCHHHHHHHHHHHHHTCS---CCHHHHHHHS--SSCCHHHHHHHHHHTTC
T ss_pred HhhCCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHh--cCCcHHHHHHHHHHhcc
Confidence 44556667789999999999999999994 2699999998 57999999998887643
No 30
>2ltp_A Nuclear receptor corepressor 2; SMRT, TRAC, SGC, structural genomics consortium, NESG, north structural genomics consortium; NMR {Homo sapiens}
Probab=94.87 E-value=0.0014 Score=46.56 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=42.5
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+-.||++....|+.+|..+|- .|..|..+| +|.|..+|+.|.+.|..+
T Consensus 15 ~~~~WT~eEd~~l~~~~~~~G~----~W~~IA~~l--~gRt~~q~k~r~~~~lrk 63 (89)
T 2ltp_A 15 YFQGWTEEEMGTAKKGLLEHGR----NWSAIARMV--GSKTVSQCKNFYFNYKKR 63 (89)
Confidence 4668999999999999999983 699999986 589999999998877554
No 31
>3osg_A MYB21; transcription-DNA complex, MYB2, R2R3 domain, DNA binding PR transcription factor; 2.00A {Trichomonas vaginalis} PDB: 3osf_A
Probab=95.82 E-value=0.017 Score=42.49 Aligned_cols=54 Identities=15% Similarity=0.329 Sum_probs=45.0
Q ss_pred ecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 87 VRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 87 ~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
..+...+-.||+|....++.+|..+|. .|..|...| ||.|..+|+.|...+..+
T Consensus 56 l~p~~~~~~WT~eEd~~L~~~v~~~G~----~W~~Ia~~l--~gRt~~~~k~rw~~l~~k 109 (126)
T 3osg_A 56 LAPSISHTPWTAEEDALLVQKIQEYGR----QWAIIAKFF--PGRTDIHIKNRWVTISNK 109 (126)
T ss_dssp TSTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHHHHHH
T ss_pred cccccccccCCHHHHHHHHHHHHHHCc----CHHHHHHHc--CCCCHHHHHHHHHHHHHh
Confidence 334455668999999999999999994 799999876 689999999998777654
No 32
>1gv2_A C-MYB, MYB proto-oncogene protein; transcription, DNA binding, ION binding; 1.68A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 PDB: 1mse_C* 1msf_C* 1a5j_A 1idy_A 1idz_A 1mbj_A 1mbk_A
Probab=95.79 E-value=0.02 Score=40.43 Aligned_cols=47 Identities=11% Similarity=0.193 Sum_probs=41.1
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
+-.||++....++.+|+.+|. ..+..|...| |+.|..||+.|-+.|-
T Consensus 4 k~~WT~eED~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 50 (105)
T 1gv2_A 4 KGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 50 (105)
T ss_dssp CSCCCHHHHHHHHHHHHHHCT---TCHHHHHTTS--TTCCHHHHHHHHHHTT
T ss_pred CCCCCHHHHHHHHHHHHHhCC---CcHHHHhhhh--cCCCHHHHHHHHHhcc
Confidence 567999999999999999994 2699999998 5899999999888774
No 33
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=95.77 E-value=0.017 Score=43.66 Aligned_cols=54 Identities=19% Similarity=0.276 Sum_probs=45.0
Q ss_pred eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
|..+...+-.||++....++.++..+|. .+..|..+| ||.|..+|+.|...+-.
T Consensus 103 ~l~p~~~~~~WT~eEd~~L~~~~~~~g~----~W~~Ia~~l--~gRt~~~~knr~~~~~r 156 (159)
T 1h89_C 103 HLNPEVKKTSWTEEEDRIIYQAHKRLGN----RWAEIAKLL--PGRTDNAIKNHWNSTMR 156 (159)
T ss_dssp TTCTTSCCSCCCHHHHHHHHHHHHHHCS----CHHHHHTTS--TTCCHHHHHHHHHTTTC
T ss_pred HhCccccccCCChHHHHHHHHHHHHHCC----CHHHHHHHC--CCCCHHHHHHHHHHHHh
Confidence 4445556788999999999999999994 799999975 78999999999776543
No 34
>2yqk_A Arginine-glutamic acid dipeptide repeats protein; structure genomics, SANT domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.62 E-value=0.042 Score=36.64 Aligned_cols=47 Identities=15% Similarity=0.152 Sum_probs=36.7
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL 140 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL 140 (161)
+...+-.||++.|..|.+|+..+|- ....|...| |+..|..+|..+-
T Consensus 5 p~~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY 51 (63)
T 2yqk_A 5 SSGIEKCWTEDEVKRFVKGLRQYGK----NFFRIRKEL-LPNKETGELITFY 51 (63)
T ss_dssp CCCCCCSCCHHHHHHHHHHHHHTCS----CHHHHHHHS-CTTSCHHHHHHHH
T ss_pred CCcCCCCcCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCcHHHHHHHH
Confidence 4455678999999999999999993 578888732 4458999987544
No 35
>2k9n_A MYB24; R2R3 domain, DNA-binding, nucleus, DNA binding protein; NMR {Trichomonas vaginalis} PDB: 2kdz_A
Probab=95.00 E-value=0.057 Score=38.54 Aligned_cols=46 Identities=20% Similarity=0.219 Sum_probs=39.8
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
..||++....++.+|..+|. ..+..|.+.|+ +.|..|+.-+-..|-
T Consensus 2 ~~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~~--~Rt~~qcr~Rw~~~L 47 (107)
T 2k9n_A 2 VKFTEEEDLKLQQLVMRYGA---KDWIRISQLMI--TRNPRQCRERWNNYI 47 (107)
T ss_dssp CSSCHHHHHHHHHHHHHHCS---SCHHHHHHHTT--TSCHHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHHCC---CCHHHHhhhcC--CCCHHHHHHHHHHHH
Confidence 47999999999999999994 37999999985 799999998877663
No 36
>1h89_C C-MYB, MYB proto-oncogene protein; transcription/DNA; 2.45A {Mus musculus} SCOP: a.4.1.3 a.4.1.3 a.4.1.3 PDB: 1h88_C
Probab=94.90 E-value=0.051 Score=41.05 Aligned_cols=54 Identities=9% Similarity=0.186 Sum_probs=44.8
Q ss_pred eecCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 86 YVRSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 86 ~~r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
|..+...+-.||++....++.+|..+|. -.+..|...| ||.|..+|+.+-..|-
T Consensus 51 ~l~p~~~~~~Wt~eEd~~L~~~v~~~g~---~~W~~Ia~~l--~~Rt~~qcr~Rw~~~l 104 (159)
T 1h89_C 51 VLNPELIKGPWTKEEDQRVIKLVQKYGP---KRWSVIAKHL--KGRIGKQCRERWHNHL 104 (159)
T ss_dssp TTCTTCCCSCCCHHHHHHHHHHHHHHCS---CCHHHHHHTS--TTCCHHHHHHHHHHTT
T ss_pred ccCCCcCCCCCChHHHHHHHHHHHHhCc---ccHHHHHHHc--CCCCHHHHHHHHHHHh
Confidence 3344556789999999999999999993 2599999988 5899999999887764
No 37
>2roh_A RTBP1, telomere binding protein-1; plant, nucleus, DNA binding protein; NMR {Oryza sativa}
Probab=94.89 E-value=0.1 Score=39.69 Aligned_cols=54 Identities=22% Similarity=0.116 Sum_probs=44.0
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhc--CCCCCCHHHHHHHhhhhh
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLM--NVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM--~v~gLT~~~VkSHLQKYR 144 (161)
..++.|-.||+|.-...+++|+.+|. -.|+.|+..+ ..++.|-.+++-+...+-
T Consensus 26 ~~rr~r~~WT~EEd~~L~~gV~k~G~---g~W~~I~~~~~~~~~~RT~vdlKdRWrnll 81 (122)
T 2roh_A 26 GQRRIRRPFTVAEVELLVEAVEHLGT---GRWRDVKFRAFENVHHRTYVDLKDKWKTLV 81 (122)
T ss_dssp CCCCCCCCCCHHHHHHHHHHHHHHSS---SCHHHHHHHHHSSSCCCCHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHHCC---CChHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 35677899999999999999999993 2799999976 358999999996554443
No 38
>4eef_G F-HB80.4, designed hemagglutinin binding protein; immunoglobulin, fusion of virus membrane with membrane, membrane fusion, sialic acid, virion; HET: NAG BMA; 2.70A {Artificial gene}
Probab=94.60 E-value=0.013 Score=41.74 Aligned_cols=46 Identities=22% Similarity=0.281 Sum_probs=37.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhh
Q 035517 95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM 142 (161)
Q Consensus 95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQK 142 (161)
.||.+-...|..|+..++....-.|.+|.+.++ |.|.++|+.|.|-
T Consensus 22 ~WT~eE~K~FE~ALa~yp~~tpdRWekIA~~Vp--GKT~eEVk~hY~~ 67 (74)
T 4eef_G 22 PWKFSENIAFEIALSFTNKDTPDRWKKVAQYVK--GRTPEEVKKHYEL 67 (74)
T ss_dssp CCCTTHHHHHHHHTSSSCSSCCSSSTTTGGGSC--SSCHHHHHGGGC-
T ss_pred CCCHHHHHHHHHHHHHCCCCCCcHHHHHHHHcC--CCCHHHHHHHHHH
Confidence 599999999999999997443455778888765 7999999999763
No 39
>1wgx_A KIAA1903 protein; MYB DNA-binding domain, human cDNA, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: a.4.1.3
Probab=94.58 E-value=0.075 Score=37.23 Aligned_cols=47 Identities=11% Similarity=0.017 Sum_probs=38.3
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
.||.+....|..|+..++-..--.|..|...++ |.|.++|..|-+..
T Consensus 10 ~WT~eE~k~fe~ALa~~~~~tp~rWe~IA~~V~--gKT~eE~~~hY~~l 56 (73)
T 1wgx_A 10 EWNEKELQKLHCAFASLPKHKPGFWSEVAAAVG--SRSPEECQRKYMEN 56 (73)
T ss_dssp CCCHHHHHHHHHHHHHSCSSSSSHHHHHHHHTT--TSCHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHHHHCCCCCccHHHHHHHHcC--CCCHHHHHHHHHHH
Confidence 599999999999999997323345788988875 69999999886655
No 40
>2ckx_A NGTRF1, telomere binding protein TBP1; nuclear protein; 1.9A {Nicotiana tabacum} SCOP: a.4.1.3 PDB: 2qhb_A
Probab=94.23 E-value=0.12 Score=36.50 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=39.2
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517 95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR 144 (161)
.||+|.....+++|+.+|.. .|+.|+.... +++.|-.+||.+-..+-
T Consensus 2 ~WT~eEd~~L~~gv~k~G~g---~W~~I~~~~~~~~~~RT~~~lKdrWrnll 50 (83)
T 2ckx_A 2 PFSVAEVEALVEAVEHLGTG---RWRDVKMRAFDNADHRTYVDLKDKWKTLV 50 (83)
T ss_dssp CCCHHHHHHHHHHHHHHCSS---CHHHHHHHHCTTCTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHCCC---CcHHHHHhhccccCCCCHHHHHHHHHHHH
Confidence 49999999999999999932 7999998743 58999999997765553
No 41
>2juh_A Telomere binding protein TBP1; helix, nucleus, nuclear protein; NMR {Nicotiana glutinosa}
Probab=94.10 E-value=0.088 Score=39.96 Aligned_cols=54 Identities=17% Similarity=0.076 Sum_probs=45.4
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC--CCCCCHHHHHHHhhhhh
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN--VRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~--v~gLT~~~VkSHLQKYR 144 (161)
..+++|-.||++.-...+++|+.+|. -.|+.|+..+. .++.|-.+++.+...+-
T Consensus 12 ~~rr~r~~WT~EEd~~L~~gV~k~G~---G~W~~Ia~~~~~~f~~RT~v~lKdRWrnll 67 (121)
T 2juh_A 12 SQRRIRRPFSVAEVEALVEAVEHLGT---GRWRDVKMRAFDNADHRTYVDLKDKWKTLV 67 (121)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHHHGG---GCHHHHHHHHCSCCSSCCSHHHHHHHHHHH
T ss_pred cCCCCCCCCCHHHHHHHHHHHHHHCC---CCHHHHHHHhccccCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999993 27999999975 48999999997765554
No 42
>3zqc_A MYB3; transcription-DNA complex, DNA-binding protein, nucleus; 2.90A {Trichomonas vaginalis}
Probab=94.06 E-value=0.06 Score=39.70 Aligned_cols=48 Identities=8% Similarity=-0.070 Sum_probs=40.8
Q ss_pred ceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 93 RLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 93 RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
+-.||+|.-...+.+|..+|. -.|+.|...| |+.|..|+.-|-+.|-.
T Consensus 2 Kg~Wt~eED~~L~~~v~~~g~---~~W~~Ia~~~--~~Rt~~qcr~Rw~~~l~ 49 (131)
T 3zqc_A 2 KGPFTEAEDDLIREYVKENGP---QNWPRITSFL--PNRSPKQCRERWFNHLD 49 (131)
T ss_dssp CSSCCHHHHHHHHHHHHHHCS---CCGGGGTTSC--TTSCHHHHHHHHHHHTS
T ss_pred CCCCCHHHHHHHHHHHHHhCc---CCHHHHHHHH--CCCCHHHHHHHHhhccC
Confidence 346999999999999999983 2699999988 57999999988887743
No 43
>1x58_A Hypothetical protein 4930532D21RIK; MUS musculus adult MALE testis cDNA, riken FULL-length enriched library, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.1
Probab=92.50 E-value=0.45 Score=32.56 Aligned_cols=47 Identities=17% Similarity=0.225 Sum_probs=39.4
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcC-CCCCCHHHHHHHhhhhhh
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMN-VRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~-v~gLT~~~VkSHLQKYR~ 145 (161)
.|-.||+|.-...++.|+.+|- .|+.|+.-.. .++.|.-.||. |||.
T Consensus 7 ~r~~WT~EE~~~L~~gV~k~G~----~W~~I~~~y~f~~~RT~VdLKd---k~r~ 54 (62)
T 1x58_A 7 GRKDFTKEEVNYLFHGVKTMGN----HWNSILWSFPFQKGRRAVDLAH---KYHR 54 (62)
T ss_dssp CSSSCCHHHHHHHHHHHHHHCS----CHHHHHHHSCCCTTCCHHHHHH---HHHH
T ss_pred CCCCCCHHHHHHHHHHHHHHhH----hHHHHHHhCCCccCcccchHHH---HHHH
Confidence 5778999999999999999993 8999997544 47899999994 5654
No 44
>2crg_A Metastasis associated protein MTA3; transcription factor, helix turn helix, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.4.1.3
Probab=91.52 E-value=0.48 Score=32.13 Aligned_cols=45 Identities=16% Similarity=0.129 Sum_probs=35.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHh
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHL 140 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHL 140 (161)
...-.||++.|..|.+|+..+|- ....|...| ||..|..+|..+-
T Consensus 6 ~~~~~WT~eE~~~Fe~~l~~yGK----df~~I~~~~-v~~Kt~~~~v~fY 50 (70)
T 2crg_A 6 SGMEEWSASEACLFEEALEKYGK----DFNDIRQDF-LPWKSLTSIIEYY 50 (70)
T ss_dssp CSSCCCCHHHHHHHHHHHHHTCS----CHHHHHHTT-CSSSCHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHHHhCc----cHHHHHHHH-cCCCCHHHHHHHH
Confidence 45668999999999999999993 478888721 4569999988765
No 45
>4a69_C Nuclear receptor corepressor 2; transcription, hydrolase; HET: I0P; 2.06A {Homo sapiens} PDB: 1xc5_A
Probab=89.86 E-value=0.58 Score=33.47 Aligned_cols=43 Identities=9% Similarity=0.069 Sum_probs=34.7
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHH
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSH 139 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSH 139 (161)
+..-.||++.|..|.+|+.+.|- ...+|.+.| |..|..++--|
T Consensus 41 ~~~~~WT~eE~~~F~~~~~~~gK----~F~~Ia~~l--~~Kt~~~cV~~ 83 (94)
T 4a69_C 41 QVMNMWSEQEKETFREKFMQHPK----NFGLIASFL--ERKTVAECVLY 83 (94)
T ss_dssp HHTCCCCHHHHHHHHHHHHHSTT----CHHHHHHTC--TTCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHcCC----CHHHHHHHc--CCCCHHHHHHH
Confidence 34567999999999999999984 688997775 56888887654
No 46
>1ign_A Protein (RAP1); RAP1,yeast,telomeres,homoeodomain, DNA binding protein/DNA complex; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.6 a.4.1.6 PDB: 3ukg_A
Probab=81.68 E-value=1.7 Score=36.73 Aligned_cols=55 Identities=13% Similarity=0.179 Sum_probs=43.5
Q ss_pred CceecCHHHHHHHHHHHHHhCCC-CCCc-hHHHHHhcCCCCCCHHHHHHHhhhhhhccc
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQ-EKAT-PKLVLQLMNVRGLSIAHVKSHLQMYRSKKL 148 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~-~kAt-PK~ILelM~v~gLT~~~VkSHLQKYR~kk~ 148 (161)
.+-.||+|.-+.-+++|..+|-. .... |..|..+| ||.|-.+|+.|...|-.+.+
T Consensus 7 ~k~~FT~EED~~Ile~v~k~Gn~r~ghk~W~~IAk~L--pGRT~nsIRnRw~~~L~~~l 63 (246)
T 1ign_A 7 NKASFTDEEDEFILDVVRKNPTRRTTHTLYDEISHYV--PNHTGNSIRHRFRVYLSKRL 63 (246)
T ss_dssp -CCCCCHHHHHHHHHHHHTSGGGTTCSHHHHHHTTTS--TTSCHHHHHHHHHHTTGGGC
T ss_pred CCCCCCHHHHHHHHHHHHHhCcCccccccHHHHHHHc--CCCCHHHHHHHHHHHHhhhc
Confidence 45689999999999999999831 0223 88999875 58999999999988866554
No 47
>4b4c_A Chromodomain-helicase-DNA-binding protein 1; chromatin-remodeling, histone acetylation COMP chromatin regulation, transcription; 1.62A {Homo sapiens}
Probab=74.98 E-value=4.3 Score=31.30 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=42.8
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
++...--||...-+.|+.|+..+|. -.-.+..|++--.+++-|.+.|+...+.+...
T Consensus 3 p~~~~~~~t~~E~r~fira~~kfG~-~~~r~~~I~~da~L~~Ks~~~v~~y~~~f~~~ 59 (211)
T 4b4c_A 3 PRENIKGFSDAEIRRFIKSYKKFGG-PLERLDAIARDAELVDKSETDLRRLGELVHNG 59 (211)
T ss_dssp -----CCSCHHHHHHHHHHHTTCSS-GGGCHHHHHHHTTCTTSCHHHHHHHHHHHHHH
T ss_pred CcccCCCCCHHHHHHHHHHHHHHCC-chhHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 4567788999999999999999993 23357889888788889999999877766554
No 48
>2li6_A SWI/SNF chromatin-remodeling complex subunit SWI1; ligand binding, DNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=73.14 E-value=1.1 Score=32.74 Aligned_cols=43 Identities=16% Similarity=0.301 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 98 PDLHLSFVHAVERLGGQEKA----TPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 98 ~ELH~kFv~AV~~LGG~~kA----tPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
-+|+..|.. |..+||.++. .|+.|.+.|++|. -..+++|=.||
T Consensus 49 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~--~~~Lr~~Y~k~ 95 (116)
T 2li6_A 49 INLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRI 95 (116)
T ss_dssp CSTTHHHHH-HHHHTSHHHHHHTTCHHHHHHHHTSCC--TTHHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHccccCcHHHHHHHhCCCh--HHHHHHHHHHH
Confidence 378888865 6789997663 6999999999987 45677766665
No 49
>2jxj_A Histone demethylase jarid1A; ARID domain, chromatin regulator, developmental protein, dioxygenase, iron, metal-binding, nucleus, oxidoreductase; NMR {Homo sapiens}
Probab=71.61 E-value=2.3 Score=29.66 Aligned_cols=42 Identities=21% Similarity=-0.047 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
+|+..|.. |..+||.++ ..|+.|.+.|++|.-+ .++++|+++
T Consensus 37 DL~~Ly~~-V~~~GG~~~V~~~~~W~~v~~~lg~~~~~--~~~~~Lk~~ 82 (96)
T 2jxj_A 37 DLYALSKI-VASKGGFEMVTKEKKWSKVGSRLGYLPGK--GTGSLLKSH 82 (96)
T ss_dssp CCHHHHHH-HHHHHTTHHHHHHTTHHHHHHHHTCCSCS--CHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHHccCCcHHHHHHHhCCCCcC--cHHHHHHHH
Confidence 68887865 677898866 4689999999997543 344555553
No 50
>2lm1_A Lysine-specific demethylase LID; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Drosophila melanogaster}
Probab=70.40 E-value=2.7 Score=29.81 Aligned_cols=42 Identities=24% Similarity=0.153 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chHHHHHhcCCCCCCHHHHHHHhhh
Q 035517 98 PDLHLSFVHAVERLGGQEKA----TPKLVLQLMNVRGLSIAHVKSHLQM 142 (161)
Q Consensus 98 ~ELH~kFv~AV~~LGG~~kA----tPK~ILelM~v~gLT~~~VkSHLQK 142 (161)
-+|+..|.. |..+||.++. .|+.|.+.|++|.- ..++.+|.+
T Consensus 44 vdL~~Ly~~-V~~~GG~~~V~~~~~W~~va~~lg~~~~--~~~~~~lk~ 89 (107)
T 2lm1_A 44 LDLYTLHRI-VQEEGGMEQTTKDRKWAKVANRMQYPSS--KSVGATLKA 89 (107)
T ss_dssp CCHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTTCCCC--HHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCC--CcHHHHHHH
Confidence 378888866 6679987654 69999999999763 344444444
No 51
>2cxy_A BAF250B subunit, HBAF250B; DNA-binding domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.60A {Homo sapiens} PDB: 2eh9_A 1ryu_A
Probab=67.91 E-value=3 Score=30.69 Aligned_cols=41 Identities=24% Similarity=0.307 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhCCCCCC----chHHHHHhcCCCCCCHHHHHHHhhh
Q 035517 99 DLHLSFVHAVERLGGQEKA----TPKLVLQLMNVRGLSIAHVKSHLQM 142 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~kA----tPK~ILelM~v~gLT~~~VkSHLQK 142 (161)
+|+..|.. |..+||.++. .|+.|.+.|+++.- ..++.+|.+
T Consensus 52 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~--~s~~~~Lk~ 96 (125)
T 2cxy_A 52 DLFRLYVC-VKEIGGLAQVNKNKKWRELATNLNVGTS--SSAASSLKK 96 (125)
T ss_dssp CHHHHHHH-HHHHTSHHHHHHHTCHHHHHHHTTSCSS--HHHHHHHHH
T ss_pred cHHHHHHH-HHHcCCHHHhcccCcHHHHHHHhCCCCC--CcHHHHHHH
Confidence 78888865 6789997653 79999999999863 344455544
No 52
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=67.59 E-value=9.3 Score=25.65 Aligned_cols=48 Identities=15% Similarity=0.128 Sum_probs=38.5
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
|.=|+++..+.+.++...|-.+..+.+.|.+.+++ ++..|..||.+-.
T Consensus 9 ~~~~~~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgv---s~~tV~~~L~~L~ 56 (77)
T 1qgp_A 9 LSIYQDQEQRILKFLEELGEGKATTAHDLSGKLGT---PKKEINRVLYSLA 56 (77)
T ss_dssp THHHHHHHHHHHHHHHHHCSSSCEEHHHHHHHHCC---CHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHCc---CHHHHHHHHHHHH
Confidence 34467888899999999994456799999999995 6788888887763
No 53
>2eqy_A RBP2 like, jumonji, at rich interactive domain 1B; ARID domain, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=67.54 E-value=5.4 Score=29.30 Aligned_cols=44 Identities=18% Similarity=0.127 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCCCH--HHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGLSI--AHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gLT~--~~VkSHLQKY 143 (161)
+|++.|.. |..+||.++ ..|+.|.+.|++|.-+. ..+++|=+||
T Consensus 43 DLy~Ly~~-V~~~GG~~~V~~~k~W~~V~~~lg~~~~~~~~~~Lr~~Y~k~ 92 (122)
T 2eqy_A 43 DLFQLNKL-VAEEGGFAVVCKDRKWTKIATKMGFAPGKAVGSHIRGHYERI 92 (122)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCSSSHHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHHcCCCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888865 778999755 46999999999976431 3455544444
No 54
>2jrz_A Histone demethylase jarid1C; bright/ARID domain, helical, structural genomics, structural genomics consortium, SGC, oxidoreductase; NMR {Homo sapiens} PDB: 2yqe_A
Probab=64.25 E-value=4.1 Score=29.71 Aligned_cols=44 Identities=25% Similarity=0.071 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCCC--HHHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGLS--IAHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gLT--~~~VkSHLQKY 143 (161)
+|++.|.. |..+||.++ ..|+.|.+.|++|.-| -..+++|=+||
T Consensus 41 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~a~~~Lk~~Y~k~ 90 (117)
T 2jrz_A 41 DLYSLSKI-VVEEGGYEAICKDRRWARVAQRLNYPPGKNIGSLLRSHYERI 90 (117)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHTTTHHHHHHHTTCCTTCTHHHHHHHHHHHT
T ss_pred cHHHHHHH-HHHccCHHHhcccCcHHHHHHHhCCCCCCcHHHHHHHHHHHH
Confidence 78888865 678899754 3699999999997432 23455544444
No 55
>1c20_A DEAD ringer protein; DNA-binding domain, ARID, AT-rich interaction domain, DNA- binding protein; NMR {Drosophila melanogaster} SCOP: a.4.3.1 PDB: 1kqq_A
Probab=62.76 E-value=5.8 Score=29.17 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCC-C--HHHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGL-S--IAHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gL-T--~~~VkSHLQKY 143 (161)
+||..|.. |..+||.++ ..|+.|.+.|++|.- | -..++.|=.||
T Consensus 53 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~~~~sa~~~Lk~~Y~k~ 103 (128)
T 1c20_A 53 DLYELYNL-VIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKY 103 (128)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTTHHHHHHHTCCCSSCCSHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHHcCccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 78888866 678999765 368999999998752 2 34555555554
No 56
>2kk0_A AT-rich interactive domain-containing protein 3A; DEAD ringer, AT-rich interaction domain, NESG, ARID, cytopla binding, nucleus, phosphoprotein; NMR {Homo sapiens}
Probab=58.75 E-value=6.5 Score=29.75 Aligned_cols=44 Identities=18% Similarity=0.270 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCC-C--HHHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGL-S--IAHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gL-T--~~~VkSHLQKY 143 (161)
+|+..|.. |..+||.++ -.|+.|.+.|++|.- | -..++.|-.||
T Consensus 65 DL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~tsa~~~Lk~~Y~k~ 115 (145)
T 2kk0_A 65 DLFMLYVL-VTEKGGLVEVINKKLWREITKGLNLPTSITSAAFTLRTQYMKY 115 (145)
T ss_dssp CHHHHHHH-HHHHTCHHHHHHHTCHHHHHHHTTCCTTSTTHHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhCCHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 78888866 678999765 468999999999762 1 23455555554
No 57
>1ig6_A MRF-2, modulator recognition factor 2; DNA binding protein, DNA-binding motif, protein-DNA interaction; NMR {Homo sapiens} SCOP: a.4.3.1 PDB: 2oeh_A
Probab=58.08 E-value=3 Score=29.73 Aligned_cols=45 Identities=18% Similarity=0.209 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHhCCCCCC----chHHHHHhcCCCCC-C--HHHHHHHhhhh
Q 035517 98 PDLHLSFVHAVERLGGQEKA----TPKLVLQLMNVRGL-S--IAHVKSHLQMY 143 (161)
Q Consensus 98 ~ELH~kFv~AV~~LGG~~kA----tPK~ILelM~v~gL-T--~~~VkSHLQKY 143 (161)
-+|+..|.. |..+||.++. .|+.|.+.|+++.- | -.++++|=+||
T Consensus 33 lDL~~Ly~~-V~~~GG~~~V~~~~~W~~Va~~lg~~~~~~s~~~~Lk~~Y~k~ 84 (107)
T 1ig6_A 33 INLWTMFQA-AQKLGGYETITARRQWKHIYDELGGNPGSTSAATCTRRHYERL 84 (107)
T ss_dssp CCHHHHHHH-HHHTTHHHHHHHHTTHHHHHHHHTCCTTCTTTTTTHHHHHHHH
T ss_pred ecHHHHHHH-HHHhcCHHHhcccCcHHHHHHHhCCCCCCCcHHHHHHHHHHHH
Confidence 378888865 6789987653 68999999998642 1 13466655554
No 58
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=57.65 E-value=19 Score=26.08 Aligned_cols=49 Identities=14% Similarity=0.217 Sum_probs=40.3
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
..|-...-++.++.+..-| .++|..|.+.+++ ++|+..|..||++-...
T Consensus 8 ~~~md~~d~~IL~~L~~~g---~~s~~eLA~~l~~-giS~~aVs~rL~~Le~~ 56 (111)
T 3b73_A 8 GSWMTIWDDRILEIIHEEG---NGSPKELEDRDEI-RISKSSVSRRLKKLADH 56 (111)
T ss_dssp CTTCCHHHHHHHHHHHHHS---CBCHHHHHTSTTC-CSCHHHHHHHHHHHHHT
T ss_pred hhhcCHHHHHHHHHHHHcC---CCCHHHHHHHHhc-CCCHHHHHHHHHHHHHC
Confidence 4688888899999988777 4799999998833 47999999999997654
No 59
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=53.49 E-value=28 Score=21.70 Aligned_cols=38 Identities=8% Similarity=-0.067 Sum_probs=27.3
Q ss_pred HHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 106 HAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 106 ~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.....|+|.+.-+.+.|.+.|| +|...|++|+.+=+.+
T Consensus 15 ~l~~~l~~~~g~s~~eIA~~lg---is~~tV~~~~~ra~~k 52 (68)
T 2p7v_B 15 RMRFGIDMNTDYTLEEVGKQFD---VTRERIRQIEAKALRK 52 (68)
T ss_dssp HHHTTTTSSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHG
T ss_pred HHHHccCCCCCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 3333344456679999999999 5888899888766554
No 60
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=51.88 E-value=35 Score=21.51 Aligned_cols=43 Identities=9% Similarity=-0.021 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 101 HLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 101 H~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+..+.....|+|.+.-+.+.|.+.|| +|...|++|+.+=+.+
T Consensus 15 er~il~l~~~l~~~~~~s~~eIA~~l~---is~~tV~~~~~ra~~k 57 (73)
T 1ku3_A 15 EAMVLKMRKGLIDGREHTLEEVGAYFG---VTRERIRQIENKALRK 57 (73)
T ss_dssp HHHHHHHHHTTTTSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHH
Confidence 344444444455556789999999999 5888888887665443
No 61
>1ofc_X ISWI protein; nuclear protein, chromatin remodeling factor, ATPase, SANT domain, nucleosome recognition; HET: GLC G4D; 1.9A {Drosophila melanogaster} SCOP: a.4.1.3 a.4.1.13 a.187.1.1 PDB: 2nog_A
Probab=47.17 E-value=25 Score=30.08 Aligned_cols=48 Identities=17% Similarity=0.229 Sum_probs=39.7
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517 95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147 (161)
Q Consensus 95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk 147 (161)
.||..--..|+.|+..+|. -....|...|+ |-|.+.|+-|.+.+-.+.
T Consensus 112 ~W~rrdf~~Fi~a~~kyGr---~~~~~IA~ev~--~Kt~eEV~~Y~~vFw~ry 159 (304)
T 1ofc_X 112 AWTKRDFNQFIKANEKYGR---DDIDNIAKDVE--GKTPEEVIEYNAVFWERC 159 (304)
T ss_dssp TCCHHHHHHHHHHHHHHCT---TCHHHHTTSST--TCCHHHHHHHHHHHHHHG
T ss_pred ccCHHHHHHHHHHHHHhCH---HHHHHHHHHhc--CCCHHHHHHHHHHHHHhH
Confidence 5999999999999999995 24567877775 699999999998876543
No 62
>3hm5_A DNA methyltransferase 1-associated protein 1; DNA methylation, chromatin, structural genomics consortium, SGC, activator, chromatin regulator; HET: DNA; 1.80A {Homo sapiens}
Probab=46.63 E-value=49 Score=23.80 Aligned_cols=42 Identities=12% Similarity=0.112 Sum_probs=36.7
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCC---CCCCHHHHHHH
Q 035517 94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNV---RGLSIAHVKSH 139 (161)
Q Consensus 94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v---~gLT~~~VkSH 139 (161)
--||.|.-..-++-++++|. .|-.|...+.. ++.|.+.||..
T Consensus 31 ~~WTkEETd~Lf~L~~~fdl----RW~vI~DRy~~~~~~~Rt~EdLK~R 75 (93)
T 3hm5_A 31 DAWTKAETDHLFDLSRRFDL----RFVVIHDRYDHQQFKKRSVEDLKER 75 (93)
T ss_dssp TTBCHHHHHHHHHHHHHTTT----CHHHHHHHSCTTTSCCCCHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC----CeeeehhhhccCCCCCCCHHHHHHH
Confidence 47999999999999999995 89999999964 57999998864
No 63
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=46.33 E-value=45 Score=21.94 Aligned_cols=40 Identities=15% Similarity=-0.007 Sum_probs=28.2
Q ss_pred HHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 104 FVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 104 Fv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-+.....|+|.+.-+.+.|.+.|| +|...|++|+.+=+.+
T Consensus 26 vl~l~~~l~~~~~~s~~EIA~~lg---is~~tV~~~~~ra~~k 65 (87)
T 1tty_A 26 VLRMRYGLLDGKPKTLEEVGQYFN---VTRERIRQIEVKALRK 65 (87)
T ss_dssp HHHHHHTTTTSSCCCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHH
Confidence 333444455456679999999998 5888888888765543
No 64
>1kkx_A Transcription regulatory protein ADR6; ARID, DNA-binding domain, DNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.4.3.1 PDB: 1kn5_A
Probab=44.19 E-value=9.5 Score=28.22 Aligned_cols=43 Identities=16% Similarity=0.302 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
+|+..|.. |..+||.++ ..|+.|.+.|++|. -..++.|-.||=
T Consensus 49 DL~~Ly~~-V~~~GG~~~V~~~k~W~~Va~~lg~~~--~~~Lr~~Y~k~L 95 (123)
T 1kkx_A 49 NLFYLYML-VQKFGGADQVTRTQQWSMVAQRLQISD--YQQLESIYFRIL 95 (123)
T ss_dssp CTTHHHHH-HTTTSCHHHHTTSHHHHHHHHHHTCCC--HHHHHHHHHHHH
T ss_pred cHHHHHHH-HHHhcCHHhccccccHHHHHHHHCCCh--HHHHHHHHHHHH
Confidence 67877755 788999765 36889999999987 667777666653
No 65
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=39.59 E-value=57 Score=21.54 Aligned_cols=49 Identities=16% Similarity=0.270 Sum_probs=34.8
Q ss_pred CceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 92 PRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 92 ~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
+|-+||+++-...|..+..-+| .+...|...+|| +...|..-+.+|+..
T Consensus 2 ~r~~ys~e~k~~~v~~~~~~~g---~s~~~ia~~~gI---s~~tl~rW~~~~~~~ 50 (97)
T 2jn6_A 2 PTKTYSEEFKRDAVALYENSDG---ASLQQIANDLGI---NRVTLKNWIIKYGSN 50 (97)
T ss_dssp CCCCCCHHHHHHHHHHHTTGGG---SCHHHHHHHHTS---CHHHHHHHHHHHCCC
T ss_pred CCCCCCHHHHHHHHHHHHHcCC---ChHHHHHHHHCc---CHHHHHHHHHHHhhc
Confidence 4557999987666665532202 377889999986 688888888888763
No 66
>2rq5_A Protein jumonji; developmental protein, nucleus, repressor, transcription, transcription regulation; NMR {Mus musculus}
Probab=39.21 E-value=39 Score=25.01 Aligned_cols=44 Identities=16% Similarity=0.359 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHhCCCCC----CchHHHHHhcCCCCCC---HHHHHHHhhhh
Q 035517 99 DLHLSFVHAVERLGGQEK----ATPKLVLQLMNVRGLS---IAHVKSHLQMY 143 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~k----AtPK~ILelM~v~gLT---~~~VkSHLQKY 143 (161)
+|+..| .+|..+||.++ -.|+.|.+.|++|... ...++.|-.||
T Consensus 43 DL~~Ly-~~V~~~GG~~~Vt~~k~W~~Va~~lg~p~~~~sa~~~Lr~~Y~k~ 93 (121)
T 2rq5_A 43 DLACFF-RLINEMGGMQQVTDLKKWNKLADMLRIPKTAQDRLAKLQEAYCQY 93 (121)
T ss_dssp CHHHHH-HHHHHTTSHHHHHHTTCHHHHHHHTCCCTTCSSHHHHHHHHHHTT
T ss_pred cHHHHH-HHHHHcCcHHHhcccCcHHHHHHHhCCCCCcCcHHHHHHHHHHHH
Confidence 677766 56778998754 4688999999997543 34566655555
No 67
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=36.32 E-value=53 Score=17.83 Aligned_cols=41 Identities=10% Similarity=-0.082 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 97 TPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 97 T~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
+++....++..+ ..| .+.+.|.+.|++ ++.-|..+|..|+.
T Consensus 7 ~~~~~~~i~~~~--~~g---~s~~~IA~~lgi---s~~Tv~~~~~~~~~ 47 (51)
T 1tc3_C 7 SDTERAQLDVMK--LLN---VSLHEMSRKISR---SRHCIRVYLKDPVS 47 (51)
T ss_dssp CHHHHHHHHHHH--HTT---CCHHHHHHHHTC---CHHHHHHHHHCSTT
T ss_pred CHHHHHHHHHHH--HcC---CCHHHHHHHHCc---CHHHHHHHHhhHHh
Confidence 455555555443 223 378999999994 88899999988874
No 68
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=32.76 E-value=83 Score=21.98 Aligned_cols=29 Identities=7% Similarity=0.008 Sum_probs=20.4
Q ss_pred hCCCCCCchHHHHHhcCCCCCCHHHHHHHhhh
Q 035517 111 LGGQEKATPKLVLQLMNVRGLSIAHVKSHLQM 142 (161)
Q Consensus 111 LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQK 142 (161)
++|.+.-+-+.|.+.|| +|...|++|+.+
T Consensus 34 l~~~e~~s~~EIA~~lg---iS~~tVr~~~~r 62 (99)
T 3t72_q 34 IDMNTDYTLEEVGKQFD---VTRERIRQIEAK 62 (99)
T ss_pred cCCCCCCCHHHHHHHHC---cCHHHHHHHHHH
Confidence 34345668888899888 477777777654
No 69
>1ug2_A 2610100B20RIK gene product; hypothetical protein, MYB-like DNA binding domain, structural genomics, riken structural genomics/proteomics initiative; NMR {Mus musculus} SCOP: a.4.1.3
Probab=32.64 E-value=1.2e+02 Score=22.28 Aligned_cols=50 Identities=12% Similarity=0.168 Sum_probs=40.2
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
..-+.||.+--+--|.+.++-| .-.-+...|.+.++- .+.+||+-.+|..
T Consensus 31 e~VvlWTRe~DR~IL~~cQ~~G-~s~~tFa~iA~~L~N--ks~nqV~~RFq~L 80 (95)
T 1ug2_A 31 EKVVLWTREADRVILTMCQEQG-AQPHTFSVISQQLGN--KTPVEVSHRFREL 80 (95)
T ss_dssp CCCSSSCHHHHHHHHHHHHHTT-SCTTTHHHHHHHHSS--CCHHHHHHHHHHH
T ss_pred CEEEEeccccCHHHHHHHHhcC-CChhHHHHHHHHHcc--CCHHHHHHHHHHH
Confidence 4568899999999999999888 444566677777753 8999999988864
No 70
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=31.86 E-value=52 Score=22.58 Aligned_cols=41 Identities=7% Similarity=0.093 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHH-HHHHHhhhhhh
Q 035517 99 DLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIA-HVKSHLQMYRS 145 (161)
Q Consensus 99 ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~-~VkSHLQKYR~ 145 (161)
+...+.+..+...|+ ++.+.|.+.++ +|.. -|..||++--.
T Consensus 11 ~~~~~IL~~Lk~~g~---~ta~eiA~~Lg---it~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 11 EIKEKICDYLFNVSD---SSALNLAKNIG---LTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHHHHHTCC---EEHHHHHHHHC---GGGHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHcCC---cCHHHHHHHcC---CCcHHHHHHHHHHHHH
Confidence 556777888888885 58899999999 5888 99999998543
No 71
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=30.83 E-value=52 Score=19.62 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=22.6
Q ss_pred CchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 117 AtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-+.+.|.+.|+ ++..-|++|+..-+.+
T Consensus 14 ~s~~eIA~~l~---is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 14 YTNHGISEKLH---ISIKTVETHRMNMMRK 40 (61)
T ss_dssp CCSHHHHHHTC---SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC---CCHHHHHHHHHHHHHH
Confidence 48899999999 5889999999876654
No 72
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=28.98 E-value=1.1e+02 Score=19.02 Aligned_cols=28 Identities=18% Similarity=0.088 Sum_probs=22.1
Q ss_pred CCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 116 KATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 116 kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.-+.+.|.+.|+ ++...|++|+..-+.+
T Consensus 31 g~s~~eIA~~l~---is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 31 GLPNKSIAYDLD---ISPRTVEVHRANVMAK 58 (79)
T ss_dssp TCCHHHHHHHTT---SCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 358899999998 4888899998776554
No 73
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=28.04 E-value=97 Score=20.79 Aligned_cols=37 Identities=14% Similarity=0.172 Sum_probs=27.2
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 102 LSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 102 ~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
..+..|+...|| .-....+++| +++..+...|+||.+
T Consensus 54 ~~i~~aL~~~~g----n~~~aA~~LG---Isr~tL~rklkk~~i 90 (91)
T 1ntc_A 54 TLLTTALRHTQG----HKQEAARLLG---WGAATLTAKLKELGM 90 (91)
T ss_dssp HHHHHHHHHTTT----CTTHHHHHTT---CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC----CHHHHHHHHC---cCHHHHHHHHHHhCc
Confidence 334677888887 3346677777 689999999999864
No 74
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=26.47 E-value=1.1e+02 Score=18.34 Aligned_cols=28 Identities=7% Similarity=0.050 Sum_probs=23.2
Q ss_pred CchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517 117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147 (161)
Q Consensus 117 AtPK~ILelM~v~gLT~~~VkSHLQKYR~kk 147 (161)
.+.+.|.+.|| ++...|++++.+-+.+.
T Consensus 32 ~s~~eIA~~lg---is~~tv~~~~~ra~~~l 59 (70)
T 2o8x_A 32 LSYADAAAVCG---CPVGTIRSRVARARDAL 59 (70)
T ss_dssp CCHHHHHHHHT---SCHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC---cCHHHHHHHHHHHHHHH
Confidence 48999999998 48899999988776653
No 75
>2da6_A Hepatocyte nuclear factor 1-beta; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=26.40 E-value=42 Score=24.43 Aligned_cols=58 Identities=14% Similarity=0.150 Sum_probs=34.5
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCC-CCCCchHHHHHhcCC------------------CCCCHHHHHHHhhhhhhc
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGG-QEKATPKLVLQLMNV------------------RGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG-~~kAtPK~ILelM~v------------------~gLT~~~VkSHLQKYR~k 146 (161)
+.++.|+.||+.- ...|+....-.- ++...-..|.+.+|. ..||-.+|..-.|.-|.+
T Consensus 5 ~~Rr~Rt~ft~~q-l~~Le~~F~~~~yPs~~~Re~LA~~ln~~~c~q~g~~~~~~~GL~~~~lte~~V~~WFqNRR~k 81 (102)
T 2da6_A 5 SSGRNRFKWGPAS-QQILYQAYDRQKNPSKEEREALVEECNRAECLQRGVSPSKAHGLGSNLVTEVRVYNWFANRRKE 81 (102)
T ss_dssp CSCCCCCCCCHHH-HHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHTSCCTTCGGGGGGGCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCccCCHHH-HHHHHHHHcCCCCCCHHHHHHHHHHHHHhhhcccccccchhcccccccccccceeeeecchHHH
Confidence 4678899999864 344444443331 111112346666631 158999999888877763
No 76
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=24.64 E-value=1.3e+02 Score=20.36 Aligned_cols=27 Identities=11% Similarity=0.258 Sum_probs=19.3
Q ss_pred CchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 117 AtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-+.+.|.+.|| +|...|++++++=|.+
T Consensus 125 ~s~~EIA~~lg---is~~tV~~~~~ra~~~ 151 (164)
T 3mzy_A 125 YSYREIATILS---KNLKSIDNTIQRIRKK 151 (164)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC---CCHHHHHHHHHHHHHH
Confidence 37777777777 4778888887765543
No 77
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=24.50 E-value=1.5e+02 Score=19.71 Aligned_cols=59 Identities=8% Similarity=-0.028 Sum_probs=35.9
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhcc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSKK 147 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~kk 147 (161)
.+++|.+.|.+--......+...--.--.++....+|...-|||..||+.=.|..|.+.
T Consensus 7 ~rk~R~~~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~ 65 (83)
T 2dmn_A 7 GKKRKGNLPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRI 65 (83)
T ss_dssp CCCCCSSCCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCcCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhh
Confidence 56778888876544433333332111223444455555555699999999999988753
No 78
>2g7r_A Mucosa-associated lymphoid tissue lymphoma transl protein 1; death domain, chromosomal translocation, hydrolase; 2.70A {Homo sapiens}
Probab=24.24 E-value=30 Score=26.29 Aligned_cols=48 Identities=27% Similarity=0.409 Sum_probs=36.9
Q ss_pred CceecCH-HHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhh
Q 035517 92 PRLRWTP-DLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMY 143 (161)
Q Consensus 92 ~RlrWT~-ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKY 143 (161)
.||+-++ +|+.+=+..++.-| ...+..|.+|.+.|.|+.++-.-||.-
T Consensus 56 ~~fr~S~~~l~~cslkvle~~g----SPSr~LL~~~~~~g~Tl~~L~~~Lq~m 104 (117)
T 2g7r_A 56 GRLRLSCLDLEQCSLKVLEPEG----SPSLCLLKLMGEKGCTVTELSDFLQAM 104 (117)
T ss_dssp ----CCHHHHHHHHGGGGSTTC----CHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cccccChHHhhhhhhhhhccCC----ChHHHHHHHHHHcCCcHHHHHHHHHHh
Confidence 7889998 89999888887666 245678999999999999999999863
No 79
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=23.48 E-value=1.6e+02 Score=19.25 Aligned_cols=48 Identities=13% Similarity=0.148 Sum_probs=34.9
Q ss_pred CCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 91 MPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
+++-.+|+++-...|..+. +| .+...|...++| ++..|...+.+|+..
T Consensus 18 ~~~~~ys~e~k~~~v~~~~--~g---~s~~~iA~~~gI---s~sTl~rW~k~~~~~ 65 (87)
T 2elh_A 18 RPLRSLTPRDKIHAIQRIH--DG---ESKASVARDIGV---PESTLRGWCKNEDKL 65 (87)
T ss_dssp SCCSSCCHHHHHHHHHHHH--HT---CCHHHHHHHHTC---CHHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHH--CC---CCHHHHHHHHCc---CHHHHHHHHHHHHhc
Confidence 3456789988776666652 33 377889999996 677788888888764
No 80
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=23.32 E-value=1.4e+02 Score=19.53 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=20.1
Q ss_pred CchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 117 AtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-+-+.|.+.|| ++...|++||.+-|.+
T Consensus 54 ~s~~eIA~~lg---is~~tV~~~l~ra~~~ 80 (92)
T 3hug_A 54 WSTAQIATDLG---IAEGTVKSRLHYAVRA 80 (92)
T ss_dssp CCHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 36777888887 5788888888776654
No 81
>2kt0_A Nanog, homeobox protein nanog; homeodomain, structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics; NMR {Homo sapiens}
Probab=23.10 E-value=1.6e+02 Score=19.16 Aligned_cols=56 Identities=18% Similarity=0.165 Sum_probs=34.2
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
+.+++|..+|++-.. .|+.+.... ...++..+.+|...-|||..+|+.=.|.-|.+
T Consensus 21 ~~rr~Rt~ft~~Q~~-~Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k 76 (84)
T 2kt0_A 21 KKQKTRTVFSSTQLC-VLNDRFQRQ--KYLSLQQMQELSNILNLSYKQVKTWFQNQRMK 76 (84)
T ss_dssp CSCCCSSCCCHHHHH-HHHHHHHHS--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred CCCCCCCCCCHHHHH-HHHHHHHhC--CCCCHHHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 456778888886433 344443332 22344444444444458999999988888775
No 82
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=23.04 E-value=1.4e+02 Score=18.52 Aligned_cols=37 Identities=3% Similarity=0.064 Sum_probs=29.0
Q ss_pred HHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 103 SFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 103 kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+..|+...|| .-....+.+| +++..+-..|+||.+.
T Consensus 23 ~i~~aL~~~~g----n~~~aA~~LG---isr~tL~rklkk~gi~ 59 (63)
T 3e7l_A 23 FIEEKLREYDY----DLKRTAEEIG---IDLSNLYRKIKSLNIR 59 (63)
T ss_dssp HHHHHHHHTTT----CHHHHHHHHT---CCHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhCC----CHHHHHHHHC---cCHHHHHHHHHHhCCC
Confidence 35678888887 4567788888 5899999999999764
No 83
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=22.83 E-value=1.2e+02 Score=19.62 Aligned_cols=43 Identities=16% Similarity=0.239 Sum_probs=29.5
Q ss_pred ecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 95 RWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 95 rWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+|+..-.-|.- + + +.-+.+.|.+.|+ ++...|++|+..-+.+
T Consensus 21 ~Lt~~e~~vl~l-~--~---~g~s~~eIA~~l~---is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 21 QLTPRERDILKL-I--A---QGLPNKMIARRLD---ITESTVKVHVKHMLKK 63 (82)
T ss_dssp GSCHHHHHHHHH-H--T---TTCCHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHH-H--H---cCCCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 355555444433 2 2 2358999999999 5889999999876554
No 84
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=22.72 E-value=1.8e+02 Score=19.59 Aligned_cols=45 Identities=13% Similarity=0.113 Sum_probs=35.3
Q ss_pred CHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhh
Q 035517 97 TPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYR 144 (161)
Q Consensus 97 T~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR 144 (161)
..++.++.+.++...|-.+..+-+.|.+.++ +++..|..||.+-.
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg---vsr~tV~~~L~~Le 52 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG---TPKKEINRVLYSLA 52 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT---CCHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC---cCHHHHHHHHHHHH
Confidence 4567788899999888224568899999999 57888999987764
No 85
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=22.51 E-value=89 Score=20.91 Aligned_cols=27 Identities=26% Similarity=0.165 Sum_probs=22.5
Q ss_pred CchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 117 ATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 117 AtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-+-+.|.+.|+ ++...|++|+..-+.+
T Consensus 43 ~s~~eIA~~l~---is~~tV~~~l~r~~~k 69 (95)
T 3c57_A 43 LTNKQIADRMF---LAEKTVKNYVSRLLAK 69 (95)
T ss_dssp CCHHHHHHHHT---CCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 48899999999 4889999999876654
No 86
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=22.25 E-value=1.6e+02 Score=18.85 Aligned_cols=56 Identities=23% Similarity=0.232 Sum_probs=34.3
Q ss_pred cCCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 88 RSKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 88 r~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
+.+++|.++|++-- ..|+.+.... ...++..+.+|...-+||..+|+.=.|.-|.+
T Consensus 16 ~~rr~Rt~ft~~Ql-~~Le~~f~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 71 (80)
T 2da3_A 16 RDKRLRTTITPEQL-EILYQKYLLD--SNPTRKMLDHIAHEVGLKKRVVQVWFQNTRAR 71 (80)
T ss_dssp CCTTCCSSCCTTTH-HHHHHHHHHC--SSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCHHHH-HHHHHHHHhc--CCCCHHHHHHHHHHHCcCHHHhHHHhHHHHHh
Confidence 45677888888643 3444444443 23344444444333358999999998888764
No 87
>2ebi_A DNA binding protein GT-1; DNA-binding domain, phosphorylation; HET: DNA; NMR {Arabidopsis thaliana} PDB: 2jmw_A*
Probab=22.18 E-value=78 Score=21.10 Aligned_cols=49 Identities=12% Similarity=0.036 Sum_probs=35.5
Q ss_pred CCceecCHHHHHHHHHHHHH------hCCCCCCchHHHHHhcCCC--CCCHHHHHHH
Q 035517 91 MPRLRWTPDLHLSFVHAVER------LGGQEKATPKLVLQLMNVR--GLSIAHVKSH 139 (161)
Q Consensus 91 k~RlrWT~ELH~kFv~AV~~------LGG~~kAtPK~ILelM~v~--gLT~~~VkSH 139 (161)
+-+..||.+.-..||.+... .|+..+..+..|.+.|.-. ..|..|++.-
T Consensus 2 kR~~~Wt~~Et~~Li~~~~e~~~~f~~~~~~~~~W~~Ia~~m~~~G~~rs~~qC~~K 58 (86)
T 2ebi_A 2 KRAETWVQDETRSLIMFRRGMDGLFNTSKSNKHLWEQISSKMREKGFDRSPDMCTDK 58 (86)
T ss_dssp CCSCCCCHHHHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHCCCCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 45678999999999998864 2444556778887776632 4789998743
No 88
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=22.13 E-value=1.6e+02 Score=18.66 Aligned_cols=55 Identities=22% Similarity=0.192 Sum_probs=34.7
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
.+++|.++|++-.. .|+.+...- ...++..+.+|...-|||..+|+.=.|.-|.+
T Consensus 7 ~~r~R~~ft~~q~~-~Le~~F~~~--~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k 61 (70)
T 2e1o_A 7 GKGGQVRFSNDQTI-ELEKKFETQ--KYLSPPERKRLAKMLQLSERQVKTWFQNRRAK 61 (70)
T ss_dssp CCCCCCCCCHHHHH-HHHHHHHHC--SSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCHHHHH-HHHHHHHcC--CCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhh
Confidence 45678889986433 344444332 23445555555554568999999988877764
No 89
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=21.74 E-value=1.1e+02 Score=18.48 Aligned_cols=44 Identities=18% Similarity=0.099 Sum_probs=29.5
Q ss_pred eecCHHHHHHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhhc
Q 035517 94 LRWTPDLHLSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 94 lrWT~ELH~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~k 146 (161)
-.+|+..-.-|.- + +.| -+.+.|.+.|+ ++...|+.|+..-+.+
T Consensus 10 ~~L~~~e~~il~~-~--~~g---~s~~eIA~~l~---is~~tV~~~~~~~~~k 53 (74)
T 1fse_A 10 PLLTKREREVFEL-L--VQD---KTTKEIASELF---ISEKTVRNHISNAMQK 53 (74)
T ss_dssp CCCCHHHHHHHHH-H--TTT---CCHHHHHHHHT---SCHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHH-H--HcC---CCHHHHHHHHC---CCHHHHHHHHHHHHHH
Confidence 3456554444433 3 222 38999999999 4889999999876544
No 90
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=21.58 E-value=1.4e+02 Score=20.42 Aligned_cols=37 Identities=8% Similarity=-0.030 Sum_probs=28.4
Q ss_pred HHHHHHHHHhCCCCCCchHHHHHhcCCCCCCHHHHHHHhhhhhh
Q 035517 102 LSFVHAVERLGGQEKATPKLVLQLMNVRGLSIAHVKSHLQMYRS 145 (161)
Q Consensus 102 ~kFv~AV~~LGG~~kAtPK~ILelM~v~gLT~~~VkSHLQKYR~ 145 (161)
..+.+|+.+.|| .-....+.+| +++..+...|+||.+
T Consensus 44 ~~I~~aL~~~~G----N~s~AA~~LG---ISR~TLyrKLkk~gi 80 (81)
T 1umq_A 44 EHIQRIYEMCDR----NVSETARRLN---MHRRTLQRILAKRSP 80 (81)
T ss_dssp HHHHHHHHHTTS----CHHHHHHHHT---SCHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhCC----CHHHHHHHhC---CCHHHHHHHHHHhCC
Confidence 345688999987 4567788888 588899888998864
No 91
>2cuf_A FLJ21616 protein; homeobox domain, hepatocyte transcription factor, structural genomics, loop insertion, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=20.05 E-value=1.8e+02 Score=19.57 Aligned_cols=55 Identities=11% Similarity=0.151 Sum_probs=32.5
Q ss_pred CCCCceecCHHHHHHHHHHHHHhCCCCCCch---HHHHHhcC------------CCCCCHHHHHHHhhhhhhc
Q 035517 89 SKMPRLRWTPDLHLSFVHAVERLGGQEKATP---KLVLQLMN------------VRGLSIAHVKSHLQMYRSK 146 (161)
Q Consensus 89 ~Kk~RlrWT~ELH~kFv~AV~~LGG~~kAtP---K~ILelM~------------v~gLT~~~VkSHLQKYR~k 146 (161)
.++.|..||++-.. .|+.+..-- . ..+. ..|.+.++ -..||..+|..=.|.-|.+
T Consensus 7 ~rr~R~~ft~~ql~-~Le~~F~~~-~-yP~~~~r~~lA~~l~~~~~~~~~~~~~~~~ls~~qV~~WFqNRR~k 76 (95)
T 2cuf_A 7 GRGSRFTWRKECLA-VMESYFNEN-Q-YPDEAKREEIANACNAVIQKPGKKLSDLERVTSLKVYNWFANRRKE 76 (95)
T ss_dssp CCCCSCCCCHHHHH-HHHHHHHHC-S-SCCHHHHHHHHHHHHHHHCCTTCCCCTTTCCCHHHHHHHHHHHHHH
T ss_pred CCCCCCcCCHHHHH-HHHHHHhcC-C-CCCHHHHHHHHHHHCchhhcccccccccCcCCHHHHHHHHHHHHHH
Confidence 56789999996433 344433332 1 1222 23455554 1238999999888877664
Done!