BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035519
(169 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1SUO|A Chain A, Structure Of Mammalian Cytochrome P450 2b4 With Bound
4-(4- Chlorophenyl)imidazole
pdb|2BDM|A Chain A, Structure Of Cytochrome P450 2b4 With Bound Bifonazole
pdb|3G5N|A Chain A, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|B Chain B, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|C Chain C, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G5N|D Chain D, Triple Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|A Chain A, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|B Chain B, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|C Chain C, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3G93|D Chain D, Single Ligand Occupancy Crystal Structure Of Cytochrome
P450 Complex With The Inhibitor
1-Biphenyl-4-Methyl-1h-Imidazole
pdb|3KW4|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Ticlopidine
pdb|3ME6|A Chain A, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|B Chain B, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|C Chain C, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3ME6|D Chain D, Crystal Structure Of Cytochrome 2b4 In Complex With The
Anti-Platelet Drug Clopidogrel
pdb|3MVR|A Chain A, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3MVR|B Chain B, Crystal Structure Of Cytochrome P450 2b4-H226y In A Closed
Conformation
pdb|3R1A|A Chain A, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|B Chain B, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|C Chain C, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|D Chain D, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|E Chain E, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|F Chain F, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|G Chain G, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1A|H Chain H, Closed Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|A Chain A, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|B Chain B, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|C Chain C, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3R1B|D Chain D, Open Crystal Structure Of Cytochrome P450 2b4 Covalently
Bound To The Mechanism-Based Inactivator
Tert-Butylphenylacetylene
pdb|3TMZ|A Chain A, Crystal Structure Of P450 2b4(H226y) In Complex With
Amlodipine
pdb|3UAS|A Chain A, Cytochrome P450 2b4 Covalently Bound To The
Mechanism-based Inactivator 9-ethynylphenanthrene
Length = 476
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 86 SWIKL---YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKK-FLGDGL 141
S+++L YG F ++ G +P +V+ D I+E L D+ A+ R + F G G+
Sbjct: 35 SFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGV 94
Query: 142 VTTQGEKWFKQRKLA 156
+ GE+W R+ +
Sbjct: 95 IFANGERWRALRRFS 109
>pdb|3TK3|A Chain A, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|B Chain B, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|C Chain C, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
pdb|3TK3|D Chain D, Cytochrome P450 2b4 Mutant L437a In Complex With
4-(4-Chlorophenyl) Imidazole
Length = 476
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 86 SWIKL---YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKK-FLGDGL 141
S+++L YG F ++ G +P +V+ D I+E L D+ A+ R + F G G+
Sbjct: 35 SFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGV 94
Query: 142 VTTQGEKWFKQRKLA 156
+ GE+W R+ +
Sbjct: 95 IFANGERWRALRRFS 109
>pdb|1PO5|A Chain A, Structure Of Mammalian Cytochrome P450 2b4
Length = 476
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 86 SWIKL---YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKK-FLGDGL 141
S+++L YG F ++ G +P +V+ D I+E L D+ A+ R + F G G+
Sbjct: 35 SFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGV 94
Query: 142 VTTQGEKWFKQRKLA 156
+ GE+W R+ +
Sbjct: 95 IFANGERWRALRRFS 109
>pdb|2Q6N|A Chain A, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|B Chain B, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|C Chain C, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|D Chain D, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|E Chain E, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|F Chain F, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
pdb|2Q6N|G Chain G, Structure Of Cytochrome P450 2b4 With Bound 1-(4-
Cholorophenyl)imidazole
Length = 478
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 86 SWIKL---YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKK-FLGDGL 141
S+++L YG F ++ G +P +V+ D I+E L D+ A+ R + F G G+
Sbjct: 35 SFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGV 94
Query: 142 VTTQGEKWFKQRKLA 156
+ GE+W R+ +
Sbjct: 95 IFANGERWRALRRFS 109
>pdb|4H1N|A Chain A, Crystal Structure Of P450 2b4 F297a Mutant In Complex With
Anti- Platelet Drug Clopidogrel
Length = 479
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 4/75 (5%)
Query: 86 SWIKL---YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKK-FLGDGL 141
S+++L YG F ++ G +P +V+ D I+E L D+ A+ R + F G G+
Sbjct: 35 SFLRLREKYGDVFTVYLGSRPVVVLCGTDAIREALVDQAEAFSGRGKIAVVDPIFQGYGV 94
Query: 142 VTTQGEKWFKQRKLA 156
+ GE+W R+ +
Sbjct: 95 IFANGERWRALRRFS 109
>pdb|3UA1|A Chain A, Crystal Structure Of The Cytochrome
P4503a4-Bromoergocryptine Complex
pdb|3TJS|A Chain A, Crystal Structure Of The Complex Between Human Cytochrome
P450 3a4 And Desthiazolylmethyloxycarbonyl Ritonavir
Length = 487
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEIL-NDKDRAYPKREPTNFIKKFLGDGLVTTQGE 147
K YG + ++G QP L + +PD+IK +L + + R P + F+ + + E
Sbjct: 46 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPV-GFMKSAISIAEDE 104
Query: 148 KWFKQRKLANHAFHVETLK 166
+W + R L + F LK
Sbjct: 105 EWKRLRSLLSPTFTSGKLK 123
>pdb|1TQN|A Chain A, Crystal Structure Of Human Microsomal P450 3a4
Length = 486
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEIL-NDKDRAYPKREPTNFIKKFLGDGLVTTQGE 147
K YG + ++G QP L + +PD+IK +L + + R P + F+ + + E
Sbjct: 45 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPV-GFMKSAISIAEDE 103
Query: 148 KWFKQRKLANHAFHVETLK 166
+W + R L + F LK
Sbjct: 104 EWKRLRSLLSPTFTSGKLK 122
>pdb|1W0E|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0F|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|1W0G|A Chain A, Crystal Structure Of Human Cytochrome P450 3a4
pdb|2J0D|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2J0D|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Erythromycin
pdb|2V0M|A Chain A, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|B Chain B, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|C Chain C, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|2V0M|D Chain D, Crystal Structure Of Human P450 3a4 In Complex With
Ketoconazole
pdb|3NXU|A Chain A, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
pdb|3NXU|B Chain B, Crystal Structure Of Human Cytochrome P4503a4 Bound To An
Inhibitor Ritonavir
Length = 485
Score = 35.4 bits (80), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEIL-NDKDRAYPKREPTNFIKKFLGDGLVTTQGE 147
K YG + ++G QP L + +PD+IK +L + + R P + F+ + + E
Sbjct: 44 KKYGKVWGFYDGQQPVLAITDPDMIKTVLVKECYSVFTNRRPFGPV-GFMKSAISIAEDE 102
Query: 148 KWFKQRKLANHAFHVETLK 166
+W + R L + F LK
Sbjct: 103 EWKRLRSLLSPTFTSGKLK 121
>pdb|2Q9F|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1 In Complex
With Cholesterol-3-Sulphate
pdb|2Q9G|A Chain A, Crystal Structure Of Human Cytochrome P450 46a1
pdb|3MDM|A Chain A, Thioperamide Complex Of Cytochrome P450 46a1
pdb|3MDR|A Chain A, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDR|B Chain B, Tranylcypromine Complex Of Cytochrome P450 46a1
pdb|3MDT|A Chain A, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDT|B Chain B, Voriconazole Complex Of Cytochrome P450 46a1
pdb|3MDV|A Chain A, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|3MDV|B Chain B, Clotrimazole Complex Of Cytochrome P450 46a1
pdb|4ENH|A Chain A, Crystal Structure Of Human Cytochrome P450 Cyp46a1 With
Fluvoxamine Bound
pdb|4FIA|A Chain A, Crystal Structure Of Human Cyp46a1 P450 With Bicalutamide
Bound
Length = 456
Score = 33.9 bits (76), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 6/102 (5%)
Query: 70 MELTHQIFPRVYPHVY-SWIKLYGTNFLMWNGLQPQLVVAEPDLIKEILN----DKDRAY 124
M ++ RV V+ W K YG + + ++V P+ +K+ L +KD
Sbjct: 1 MAKKDEVGGRVLQDVFLDWAKKYGPVVRVNVFHKTSVIVTSPESVKKFLMSTKYNKDSKM 60
Query: 125 PKREPTNFIKKFLGDGLVTTQG-EKWFKQRKLANHAFHVETL 165
+ T F ++ G GLV+ E+W KQR++ + AF +L
Sbjct: 61 YRALQTVFGERLFGQGLVSECNYERWHKQRRVIDLAFSRSSL 102
>pdb|1PQ2|A Chain A, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|1PQ2|B Chain B, Crystal Structure Of Human Drug Metabolizing Cytochrome
P450 2c8
pdb|2NNH|A Chain A, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNH|B Chain B, Cyp2c8dh Complexed With 2 Molecules Of 9-Cis Retinoic Acid
pdb|2NNI|A Chain A, Cyp2c8dh Complexed With Montelukast
pdb|2NNJ|A Chain A, Cyp2c8dh Complexed With Felodipine
pdb|2VN0|A Chain A, Cyp2c8dh Complexed With Troglitazone
Length = 476
Score = 33.1 bits (74), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 17/72 (23%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 86 SWIKLYGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKFL-GDGLVTT 144
++ K+YG F ++ G+ P +V + +KE L D + R + ++ G G++++
Sbjct: 38 NFSKVYGPVFTVYFGMNPIVVFHGYEAVKEALIDNGEEFSGRGNSPISQRITKGLGIISS 97
Query: 145 QGEKWFKQRKLA 156
G++W + R+ +
Sbjct: 98 NGKRWKEIRRFS 109
>pdb|3IBD|A Chain A, Crystal Structure Of A Cytochrome P450 2b6 Genetic Variant
In Complex With The Inhibitor
4-(4-Chlorophenyl)imidazole
pdb|3QOA|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-Benzylpyridine.
pdb|3QU8|A Chain A, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|B Chain B, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|C Chain C, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|D Chain D, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|E Chain E, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3QU8|F Chain F, Crystal Structure Of A Human Cytochrome P450 2b6
(Y226hK262R) IN Complex With The Inhibitor
4-(4-Nitrobenzyl)pyridine.
pdb|3UA5|A Chain A, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
pdb|3UA5|B Chain B, Crystal Structure Of P450 2b6 (Y226hK262R) IN COMPLEX WITH
TWO Molecules Of Amlodipine
Length = 476
Score = 32.0 bits (71), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Query: 91 YGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKFL-GDGLVTTQGEKW 149
YG F + G +P +++ + I+E L DK A+ R + F G G++ G +W
Sbjct: 43 YGDVFTVHLGPRPVVMLCGVEAIREALVDKAEAFSGRGKIAMVDPFFRGYGVIFANGNRW 102
Query: 150 FKQRKLA 156
R+ +
Sbjct: 103 KVLRRFS 109
>pdb|1R9O|A Chain A, Crystal Structure Of P4502c9 With Flurbiprofen Bound
Length = 477
Score = 32.0 bits (71), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKF-LGDGLVTTQGE 147
K+YG F ++ GL+P +V+ + +KE L D + R ++ G G+V + G+
Sbjct: 42 KVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGK 101
Query: 148 KWFKQRKLA 156
KW + R+ +
Sbjct: 102 KWKEIRRFS 110
>pdb|1OG2|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG2|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|A Chain A, Structure Of Human Cytochrome P450 Cyp2c9
pdb|1OG5|B Chain B, Structure Of Human Cytochrome P450 Cyp2c9
Length = 475
Score = 31.6 bits (70), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKF-LGDGLVTTQGE 147
K+YG F ++ GL+P +V+ + +KE L D + R ++ G G+V + G+
Sbjct: 40 KVYGPVFTLYFGLKPIVVLHGYEAVKEALIDLGEEFSGRGIFPLAERANRGFGIVFSNGK 99
Query: 148 KWFKQRKLA 156
KW + R+ +
Sbjct: 100 KWKEIRRFS 108
>pdb|4GQS|A Chain A, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|B Chain B, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|C Chain C, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
pdb|4GQS|D Chain D, Structure Of Human Microsomal Cytochrome P450 (cyp) 2c19
Length = 477
Score = 29.3 bits (64), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
Query: 89 KLYGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKF-LGDGLVTTQGE 147
K+YG F ++ GL+ +V+ +++KE L D + R ++ G G+V + G+
Sbjct: 42 KIYGPVFTLYFGLERMVVLHGYEVVKEALIDLGEEFSGRGHFPLAERANRGFGIVFSNGK 101
Query: 148 KWFKQRKLA 156
+W + R+ +
Sbjct: 102 RWKEIRRFS 110
>pdb|1DT6|A Chain A, Structure Of Mammalian Cytochrome P450 2c5
pdb|1N6B|A Chain A, Microsomal Cytochrome P450 2c5/3lvdh Complex With A
Dimethyl Derivative Of Sulfaphenazole
pdb|1NR6|A Chain A, Microsomal Cytochrome P450 2c53LVDH COMPLEX WITH
DICLOFENAC
Length = 473
Score = 28.9 bits (63), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/71 (22%), Positives = 35/71 (49%), Gaps = 1/71 (1%)
Query: 87 WIKLYGTNFLMWNGLQPQLVVAEPDLIKEILNDKDRAYPKREPTNFIKKFL-GDGLVTTQ 145
+ + YG F ++ G++P +V+ + +KE L D + R ++K G G+ +
Sbjct: 39 FSECYGPVFTVYLGMKPTVVLHGYEAVKEALVDLGEEFAGRGSVPILEKVSKGLGIAFSN 98
Query: 146 GEKWFKQRKLA 156
+ W + R+ +
Sbjct: 99 AKTWKEMRRFS 109
>pdb|3R0Q|C Chain C, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|G Chain G, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|A Chain A, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
pdb|3R0Q|E Chain E, A Uniquely Open Conformation Revealed In The Crystal
Structure Of Arabidopsis Thaliana Protein Arginine
Methyltransferase 10
Length = 376
Score = 28.1 bits (61), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 9/20 (45%), Positives = 14/20 (70%)
Query: 97 MWNGLQPQLVVAEPDLIKEI 116
MWN L PQ ++ P ++KE+
Sbjct: 231 MWNDLNPQQIIGTPTIVKEM 250
>pdb|4HN1|A Chain A, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|B Chain B, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|C Chain C, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
pdb|4HN1|D Chain D, Crystal Structure Of H60nY130F DOUBLE MUTANT OF CHMJ, A
3'- Monoepimerase From Streptomyces Bikiniensis In
Complex With Dtdp
Length = 201
Score = 27.3 bits (59), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 99 NGLQPQLVVAEPDLIKEILNDKDRAYP 125
N L P L +A PD I+ +L+D+D P
Sbjct: 145 NPLDPDLGIAWPDDIEPLLSDRDENAP 171
>pdb|4HMZ|A Chain A, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|B Chain B, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|C Chain C, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
pdb|4HMZ|D Chain D, Crystal Structure Of Chmj, A 3'-Monoepimerase From
Streptomyces Bikiniensis In Complex With Dtdp-Quinovose
Length = 200
Score = 27.3 bits (59), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 99 NGLQPQLVVAEPDLIKEILNDKDRAYP 125
N L P L +A PD I+ +L+D+D P
Sbjct: 145 NPLDPDLGIAWPDDIEPLLSDRDENAP 171
>pdb|4HN0|A Chain A, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|B Chain B, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|C Chain C, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
pdb|4HN0|D Chain D, Crystal Structure Of Chmj, A 3'-Monoepimerase Apoenzyme
From Streptomyces Bikiniensis
Length = 198
Score = 27.3 bits (59), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 99 NGLQPQLVVAEPDLIKEILNDKDRAYP 125
N L P L +A PD I+ +L+D+D P
Sbjct: 145 NPLDPDLGIAWPDDIEPLLSDRDENAP 171
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.139 0.444
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,149,810
Number of Sequences: 62578
Number of extensions: 208494
Number of successful extensions: 564
Number of sequences better than 100.0: 58
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 547
Number of HSP's gapped (non-prelim): 59
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 48 (23.1 bits)