BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 035521
         (302 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1V5N|A Chain A, Solution Structure Of Dc1 Domain Of Pdi-Like Hypothetical
           Protein From Arabidopsis Thaliana
          Length = 89

 Score = 51.6 bits (122), Expect = 5e-07,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 5/55 (9%)

Query: 62  PQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCA 116
           P+ + H  H  H L L    +Y      CD C  +G  +SYHC  CDFDLH  CA
Sbjct: 27  PKKVKHVLHEEHELELTRVQVY-----TCDKCEEEGTIWSYHCDECDFDLHAKCA 76



 Score = 39.7 bits (91), Expect = 0.002,   Method: Composition-based stats.
 Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)

Query: 119 PLTLIHQSHP-HQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSLCEFDAHLDCAAN 175
           P  + H  H  H+L+LT       + ++CD C++ G+  W Y C  C+FD H  CA N
Sbjct: 27  PKKVKHVLHEEHELELT-----RVQVYTCDKCEEEGTI-WSYHCDECDFDLHAKCALN 78



 Score = 30.4 bits (67), Expect = 1.4,   Method: Composition-based stats.
 Identities = 16/50 (32%), Positives = 24/50 (48%), Gaps = 5/50 (10%)

Query: 10 IQHFSHL-HLLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSC 58
          ++H  H  H LEL+  Q      +C  C+ + +   Y C  C+F LH  C
Sbjct: 30 VKHVLHEEHELELTRVQVY----TCDKCEEEGTIWSYHCDECDFDLHAKC 75


>pdb|1W81|A Chain A, Crystal Structure Of Apical Membrane Antigen 1 From
           Plasmodium Vivax
 pdb|1W8K|A Chain A, Crystal Structure Of Apical Membrane Antigen 1 From
           Plasmodium Vivax
          Length = 447

 Score = 33.1 bits (74), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 21/85 (24%), Positives = 34/85 (40%), Gaps = 9/85 (10%)

Query: 76  SLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLIHQ---------S 126
            ++ +   P G FN D    +G GF++           +  TKP  LI+          S
Sbjct: 278 EMIKSAFLPVGAFNSDNFKSKGRGFNWANFDSVKKKCYIFNTKPTCLINDKNFIATTALS 337

Query: 127 HPHQLQLTFDPPYYTEGFSCDICKK 151
           HP ++ L F    Y +    +I K+
Sbjct: 338 HPQEVDLEFPCSIYKDEIEREIKKQ 362


>pdb|2J4W|D Chain D, Structure Of A Plasmodium Vivax Apical Membrane Antigen 1-
           Fab F8.12.19 Complex
          Length = 445

 Score = 31.6 bits (70), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 24/89 (26%), Positives = 37/89 (41%), Gaps = 17/89 (19%)

Query: 76  SLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFD-LHILCA---TKPLTLIHQ------ 125
            ++     P G FN D    +G GF++     +FD +   C    TKP  LI+       
Sbjct: 276 EMIKGAFLPVGAFNSDNFKSKGRGFNW----ANFDSVKRKCYIFNTKPTCLINDKNFIAT 331

Query: 126 ---SHPHQLQLTFDPPYYTEGFSCDICKK 151
              SHP ++ L F    Y +    +I K+
Sbjct: 332 TALSHPQEVDLEFPCSIYKDEIEREIKKQ 360


>pdb|3BBN|E Chain E, Homology Model For The Spinach Chloroplast 30s Subunit
           Fitted To 9.4a Cryo-Em Map Of The 70s Chlororibosome
          Length = 308

 Score = 29.6 bits (65), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 14/39 (35%), Positives = 21/39 (53%), Gaps = 4/39 (10%)

Query: 109 FDLHILCATKP---LTLIHQSHPHQLQLTFDPPYYTEGF 144
           F  H+ C  K    +T   Q +P + ++TFDPP   EG+
Sbjct: 50  FPTHLYCIKKDDIDITFFEQDNPDE-EITFDPPEKPEGY 87


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.321    0.135    0.443 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,775,088
Number of Sequences: 62578
Number of extensions: 396802
Number of successful extensions: 739
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 736
Number of HSP's gapped (non-prelim): 9
length of query: 302
length of database: 14,973,337
effective HSP length: 98
effective length of query: 204
effective length of database: 8,840,693
effective search space: 1803501372
effective search space used: 1803501372
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (24.3 bits)