BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035521
(302 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O80763|NRX1_ARATH Probable nucleoredoxin 1 OS=Arabidopsis thaliana GN=At1g60420 PE=1
SV=1
Length = 578
Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/59 (38%), Positives = 28/59 (47%), Gaps = 5/59 (8%)
Query: 58 CTQMPQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCA 116
P+ + H H H L L +Y CD C +G +SYHC CDFDLH CA
Sbjct: 491 AKDWPKKVKHVLHEEHELELTRVQVY-----TCDKCEEEGTIWSYHCDECDFDLHAKCA 544
Score = 38.5 bits (88), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 119 PLTLIHQSHP-HQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSLCEFDAHLDCAAN 175
P + H H H+L+LT + ++CD C++ G+ W Y C C+FD H CA N
Sbjct: 495 PKKVKHVLHEEHELELT-----RVQVYTCDKCEEEGTI-WSYHCDECDFDLHAKCALN 546
>sp|Q7Y0E8|NRX11_ORYSJ Probable nucleoredoxin 1-1 OS=Oryza sativa subsp. japonica
GN=Os03g0405500 PE=2 SV=1
Length = 569
Score = 48.1 bits (113), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 61 MPQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCA 116
P + H H H L L Y CDGC G +SY C CDFDLH CA
Sbjct: 490 WPGKLKHELHDEHELVLTRCTTY-----GCDGCDEMGSSWSYRCRECDFDLHPKCA 540
Score = 38.5 bits (88), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 30/56 (53%), Gaps = 7/56 (12%)
Query: 119 PLTLIHQSH-PHQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSLCEFDAHLDCA 173
P L H+ H H+L LT Y CD C ++GS+ W YRC C+FD H CA
Sbjct: 491 PGKLKHELHDEHELVLTRCTTY-----GCDGCDEMGSS-WSYRCRECDFDLHPKCA 540
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 9/57 (15%)
Query: 2 GRLGHDPHIQHFSHLHLLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSC 58
G+L H+ H +H L L T TT C C S Y C+ C+F LH C
Sbjct: 492 GKLKHELHDEH--ELVL-------TRCTTYGCDGCDEMGSSWSYRCRECDFDLHPKC 539
>sp|Q7Y0F2|NRX12_ORYSJ Probable nucleoredoxin 1-2 OS=Oryza sativa subsp. japonica
GN=Os03g0405900 PE=2 SV=1
Length = 581
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 38/92 (41%), Gaps = 11/92 (11%)
Query: 61 MPQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCATKPL 120
P+ + H H H L L Y CDGC G +SY C CDFDLH CA +
Sbjct: 501 WPEKLKHDLHD-HELVLTRCTTY-----GCDGCDEMGDSWSYRCKECDFDLHPKCALEEK 554
Query: 121 TLIHQSHPHQLQLTFDPPYYTEGFSCDICKKV 152
+ + Y EG D+C+KV
Sbjct: 555 GDVEMGEENAEAAP--AGYVCEG---DVCRKV 581
Score = 40.8 bits (94), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 28/55 (50%), Gaps = 6/55 (10%)
Query: 119 PLTLIHQSHPHQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSLCEFDAHLDCA 173
P L H H H+L LT Y CD C ++G + W YRC C+FD H CA
Sbjct: 502 PEKLKHDLHDHELVLTRCTTY-----GCDGCDEMGDS-WSYRCKECDFDLHPKCA 550
Score = 31.6 bits (70), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 4/54 (7%)
Query: 5 GHDPHIQHFSHLHLLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSC 58
G ++H H H L L T TT C C Y CK C+F LH C
Sbjct: 500 GWPEKLKHDLHDHELVL----TRCTTYGCDGCDEMGDSWSYRCKECDFDLHPKC 549
>sp|P52824|DGKQ_HUMAN Diacylglycerol kinase theta OS=Homo sapiens GN=DGKQ PE=1 SV=2
Length = 942
Score = 42.0 bits (97), Expect = 0.005, Method: Composition-based stats.
Identities = 47/170 (27%), Positives = 62/170 (36%), Gaps = 25/170 (14%)
Query: 26 TLNTTTSCSACKLQPSGLM-YTCKPCNFTLHVSCTQMPQLITHPSHPAHSL--SLVPTPI 82
TL T C C GL + C CNF H C + H P S+ SLV P+
Sbjct: 67 TLTKPTFCHLCSDFIWGLAGFLCDVCNFMSHEKC------LKHVRIPCTSVAPSLVRVPV 120
Query: 83 Y----PAGIFN---CDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLIHQSH------PH 129
P G+ C C + + HC C+ LH C + Q H
Sbjct: 121 AHCFGPRGLHKRKFCAVCRKVLEAPALHCEVCELHLHPDCVPFACSDCRQCHQDGHQDHD 180
Query: 130 QLQLTFDPPYYTEGFSCDICKKV-GSAHWL--YRCSLCEFDAHLDCAANL 176
+ G C++C+K GS+ L RC C AH C+A L
Sbjct: 181 THHHHWREGNLPSGARCEVCRKTCGSSDVLAGVRCEWCGVQAHSLCSAAL 230
>sp|Q6P5E8|DGKQ_MOUSE Diacylglycerol kinase theta OS=Mus musculus GN=Dgkq PE=1 SV=1
Length = 934
Score = 40.8 bits (94), Expect = 0.013, Method: Composition-based stats.
Identities = 45/167 (26%), Positives = 65/167 (38%), Gaps = 19/167 (11%)
Query: 26 TLNTTTSCSACKLQPSGLM-YTCKPCNFTLHVSCTQMPQLITHPSHPAHSLSLVPTP--I 82
TL T C C GL + C CNF H C + Q+ T + A SL VP
Sbjct: 61 TLTKPTFCHLCSDFIWGLAGFLCDVCNFMSHEKC--LKQVKTPCTSIAPSLVRVPVAHCF 118
Query: 83 YPAGIFN---CDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLIHQSHPHQLQLTFDPPY 139
G++ C C + ++ C C+ +H C + Q H Q +D +
Sbjct: 119 GSLGLYKRKFCVVCRKSLEVPAFRCEVCELHVHPDCVPFACSDCRQCH-QDGQQDYDTYH 177
Query: 140 Y-------TEGFSCDICKKV-GSAHWL--YRCSLCEFDAHLDCAANL 176
+ G C++C+K GS+ L RC C AH C+ L
Sbjct: 178 HHWREGNLPSGARCEVCRKTCGSSDVLAGVRCEWCGVQAHSVCSTAL 224
>sp|Q8VZQ0|NRX3_ARATH Probable nucleoredoxin 3 OS=Arabidopsis thaliana GN=At4g31240 PE=2
SV=1
Length = 392
Score = 37.7 bits (86), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 85 AGIFNCDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLI 123
A + CD C +QG +++ C CD+DLH C + L+
Sbjct: 353 AKAYVCDFCKKQGRFWAFSCNACDYDLHPTCVEEEEALL 391
Score = 36.2 bits (82), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 119 PLTLIHQSHPHQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSLCEFDAHLDCAAN 175
P + H H+L+L + + CD CKK G W + C+ C++D H C
Sbjct: 336 PRKVKDNKHEHELKLDM-----AKAYVCDFCKKQGR-FWAFSCNACDYDLHPTCVEE 386
>sp|Q9VDW6|DMDA_DROME Dystrophin, isoforms A/C/F/G/H OS=Drosophila melanogaster GN=Dys PE=1
SV=3
Length = 3598
Score = 36.6 bits (83), Expect = 0.23, Method: Composition-based stats.
Identities = 38/165 (23%), Positives = 62/165 (37%), Gaps = 15/165 (9%)
Query: 146 CDICKKVGSAHWLYRCSLC-EFDAHLDC------AANLLAQPIHTQHQYSLNPGAINQMQ 198
C+ICK+ + YRC C FD C A N + H H+Y + ++
Sbjct: 3112 CNICKEYPIVGFRYRCLKCFNFDMCQKCFFFGRNAKN--HKLTHPMHEYCTTTTSTEDVR 3169
Query: 199 HGNRQNAMGMNNNQFFSQRQSMGALPLQNNSYNQA-PAPAAAAAGTVNPLMDALVQGLVQ 257
R + ++F + +G LP+Q+ A +PA + T + L + + L
Sbjct: 3170 DFTRALKNKFKSRKYFKKHPRVGYLPVQSVLEGDALESPAPSPQHTTHQLQNDMHSRL-- 3227
Query: 258 GAAEQFGQTIVQSLINDGGNNCDPANDSGGDLSVNGIFGDSGTQN 302
E + + Q G+N P +D L GT N
Sbjct: 3228 ---EMYASRLAQVEYGGTGSNSTPDSDDEHQLIAQYCQALPGTSN 3269
>sp|Q0JIL1|NRX2_ORYSJ Probable nucleoredoxin 2 OS=Oryza sativa subsp. japonica
GN=Os01g0794400 PE=2 SV=1
Length = 394
Score = 35.4 bits (80), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 26/56 (46%)
Query: 5 GHDPHIQHFSHLHLLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSCTQ 60
G+ P ++H H H L + + ++ C C Q G Y C C + +H+ C +
Sbjct: 332 GYPPSLRHTGHRHELSIVSDKSGGGPYICCECDEQGLGWAYQCIACGYEIHLRCGR 387
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 2/54 (3%)
Query: 62 PQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILC 115
P + H H H LS+V + G + C C QG G++Y C C +++H+ C
Sbjct: 334 PPSLRHTGH-RHELSIV-SDKSGGGPYICCECDEQGLGWAYQCIACGYEIHLRC 385
>sp|Q8WWW0|RASF5_HUMAN Ras association domain-containing protein 5 OS=Homo sapiens
GN=RASSF5 PE=1 SV=1
Length = 418
Score = 35.0 bits (79), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 25/75 (33%), Positives = 33/75 (44%), Gaps = 8/75 (10%)
Query: 82 IYPAGIFNCDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLIHQSHPHQLQLTFDPP--- 138
+ P G CD CGR+ + CT+C F H C +LI Q L+ D P
Sbjct: 129 VLPGGPGWCDLCGREVLRQALRCTNCKFTCHPECR----SLIQLDCSQQEGLSRDRPSPE 184
Query: 139 -YYTEGFSCDICKKV 152
T FS ++CK V
Sbjct: 185 STLTVTFSQNVCKPV 199
>sp|A1S1N6|HUTI_SHEAM Imidazolonepropionase OS=Shewanella amazonensis (strain ATCC
BAA-1098 / SB2B) GN=hutI PE=3 SV=1
Length = 412
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 41/125 (32%), Gaps = 31/125 (24%)
Query: 134 TFDPPY---YTEGFSCDICKKVGSAHWL-YRCSLCEFDAHLDCAANLLAQPIHTQHQYSL 189
T DP Y + K G WL R L EFD +LA P+H H L
Sbjct: 14 TMDPSMNEAYGAITDAALAVKDGKIAWLGKRSDLPEFD--------VLATPVHRGHGGWL 65
Query: 190 NPGAINQMQH----GNRQNAMGMNNNQFFSQRQSMGALPLQNNSYNQAPAPAAAAAGTVN 245
PG I+ H GNR N L LQ SY + TV
Sbjct: 66 TPGLIDAHTHLVFAGNRANEF---------------ELRLQGASYEEIARAGGGIVSTVK 110
Query: 246 PLMDA 250
DA
Sbjct: 111 ACRDA 115
>sp|Q9Y5S2|MRCKB_HUMAN Serine/threonine-protein kinase MRCK beta OS=Homo sapiens GN=CDC42BPB
PE=1 SV=2
Length = 1711
Score = 33.9 bits (76), Expect = 1.5, Method: Composition-based stats.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 25 QTLNTTTSCSACKLQPSGLM---YTCKPCNFTLHVSCTQ-MPQLITHP 68
++ ++ T CS C GL+ Y C+ C+F HVSC PQ+ P
Sbjct: 1031 KSFSSPTQCSHCTSLMVGLIRQGYACEVCSFACHVSCKDGAPQVCPIP 1078
>sp|Q7U351|YIDC_BLOFL Membrane protein insertase YidC OS=Blochmannia floridanus GN=yidC
PE=3 SV=1
Length = 558
Score = 33.5 bits (75), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 14/124 (11%)
Query: 46 TCKPCNFTLHVSCTQMPQLITHPSHPAHSLSLVPTPIYPAGIFNCDGCGRQGHGFSYHCT 105
T +P + H S P ITH ++P + + T ++ I G + + +Y
Sbjct: 40 TLQPYSIQSHESNQNTP--ITHTNNPYSHIITIKTDVFLLKINTYSGNIEEAYLNNYQEN 97
Query: 106 HCDFDLHILCATKPLTLIHQSHPHQLQLTFDPPYYTEGFSCDICKKVGSAHWLYRCSL-- 163
L + KPL L+H S ++ Q D E F+ D+ +K H+LY +
Sbjct: 98 --------LNSQKPLKLLHTSKENKYQAYIDIETLNEYFTNDLNQK-NKKHYLYYSNTTN 148
Query: 164 -CEF 166
CE+
Sbjct: 149 QCEY 152
>sp|P97310|MCM2_MOUSE DNA replication licensing factor MCM2 OS=Mus musculus GN=Mcm2 PE=1
SV=3
Length = 904
Score = 33.5 bits (75), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 3 RLGHDPHIQHFSHLHLLELSN-PQTLNTTTSCSACKLQPSGLMYTCKPCNFTL 54
R+ H P ++ L L L+ +T TSC+ Q S + Y C CNF L
Sbjct: 284 RISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCSKCNFVL 336
>sp|P39936|IF4F2_YEAST Eukaryotic initiation factor 4F subunit p130 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=TIF4632 PE=1
SV=1
Length = 914
Score = 33.1 bits (74), Expect = 2.3, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 4/87 (4%)
Query: 178 AQPIHTQHQYSLNPGAINQMQHGNRQNAMGMNNNQFFSQRQSMGALPLQNNSYNQAPAPA 237
A+ H QY G ++ NR N+ G N Q+++ R + G L NN YN A P
Sbjct: 47 AREPHNNKQYQSKNGKYGTNKYNNRNNSQG--NAQYYNNRFNNG-YRLNNNDYNPAMLPG 103
Query: 238 AA-AAGTVNPLMDALVQGLVQGAAEQF 263
A P M + Q +V A+ +
Sbjct: 104 MQWPANYYAPQMYYIPQQMVPVASPPY 130
>sp|P49736|MCM2_HUMAN DNA replication licensing factor MCM2 OS=Homo sapiens GN=MCM2 PE=1
SV=4
Length = 904
Score = 33.1 bits (74), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 3 RLGHDPHIQHFSHLHLLELSN-PQTLNTTTSCSACKLQPSGLMYTCKPCNFTL 54
R+ H P ++ L L L+ +T TSC+ Q S + Y C CNF L
Sbjct: 284 RISHLPLVEELRSLRQLHLNQLIRTSGVVTSCTGVLPQLSMVKYNCNKCNFVL 336
>sp|Q6X936|KIRR1_RAT Kin of IRRE-like protein 1 OS=Rattus norvegicus GN=Kirrel PE=1 SV=1
Length = 789
Score = 33.1 bits (74), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 53/133 (39%), Gaps = 22/133 (16%)
Query: 31 TSCSACKLQPS----GLMYTCKPCNFTL-HVSCTQMPQLITHPSHPAHSLSLVPTPIYPA 85
T+ S +QP+ G ++TC+ N + + T + + HP P +LS+ P +
Sbjct: 212 TTISQLLIQPTDLDIGRVFTCRSMNEAIPNGKETSIELDVHHP--PTVTLSIEPQTVLEG 269
Query: 86 G--IFNCDGCGRQGHGFSYHCTHCDFDLHILCATKPLTLIHQSHPHQLQLTFDPPYYTEG 143
IF C Y F LI +H + + D ++TE
Sbjct: 270 ERVIFTCQATA-NPEILGYRWAKGGF------------LIEDAHESRYETNVDYSFFTEP 316
Query: 144 FSCDICKKVGSAH 156
SC++ KVGS +
Sbjct: 317 VSCEVDSKVGSTN 329
>sp|Q5RBA5|SQSTM_PONAB Sequestosome-1 OS=Pongo abelii GN=SQSTM1 PE=2 SV=1
Length = 440
Score = 32.7 bits (73), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 90 CDGCGRQGHGFSYHCTHC-DFDLHILCATKPLTLIHQSHPHQLQLTFDPPY--YTEGFS- 145
CDGC G Y C+ C D+DL +C K L H+ H +L F P+ +EGFS
Sbjct: 128 CDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGL---HRGH---TKLAFPSPFGHLSEGFSH 181
Query: 146 CDICKKVGSAHWLY 159
+KV H+ +
Sbjct: 182 SRWLRKVKHGHFGW 195
>sp|Q13501|SQSTM_HUMAN Sequestosome-1 OS=Homo sapiens GN=SQSTM1 PE=1 SV=1
Length = 440
Score = 32.3 bits (72), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 36/74 (48%), Gaps = 10/74 (13%)
Query: 90 CDGCGRQGHGFSYHCTHC-DFDLHILCATKPLTLIHQSHPHQLQLTFDPPY--YTEGFS- 145
CDGC G Y C+ C D+DL +C K L H+ H +L F P+ +EGFS
Sbjct: 128 CDGCNGPVVGTRYKCSVCPDYDLCSVCEGKGL---HRGH---TKLAFPSPFGHLSEGFSH 181
Query: 146 CDICKKVGSAHWLY 159
+KV H+ +
Sbjct: 182 SRWLRKVKHGHFGW 195
>sp|Q7T3T9|ZAR1_TAKRU Zygote arrest protein 1 OS=Takifugu rubripes GN=zar1 PE=2 SV=1
Length = 320
Score = 32.0 bits (71), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 12/79 (15%)
Query: 96 QGHGFSYHCTHCDFDL---HILCATKPLTLIHQSHPHQLQLTFDPPYYTEGFSCDICKKV 152
Q +G+ YHC C+ ++ C + + + Q F+P Y E +C +C K
Sbjct: 221 QKYGY-YHCRECNLRWESAYVWCVQGTNKVYFKQFCRKCQKDFNP-YRVEDITCHVCNKA 278
Query: 153 GSAHWLYRCSLCEFDAHLD 171
RC+ E H+D
Sbjct: 279 -------RCACAETQRHVD 290
>sp|Q8RXD4|BRCA1_ARATH Protein BREAST CANCER SUSCEPTIBILITY 1 homolog OS=Arabidopsis
thaliana GN=BRCA1 PE=2 SV=1
Length = 941
Score = 31.6 bits (70), Expect = 7.2, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%)
Query: 12 HFSHLHLLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSCTQM 61
+F+ L ++ L T + SCS C L+ + L K C + HV+C ++
Sbjct: 613 YFNDLTIVNLDVELTRSRRISCSCCGLKGAALGCYNKSCKNSFHVTCAKL 662
>sp|P39518|LCF2_YEAST Long-chain-fatty-acid--CoA ligase 2 OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=FAA2 PE=1 SV=1
Length = 744
Score = 31.2 bits (69), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 30/62 (48%)
Query: 18 LLELSNPQTLNTTTSCSACKLQPSGLMYTCKPCNFTLHVSCTQMPQLITHPSHPAHSLSL 77
+L +NP+ + T +C A L + L T P ++ T+ P LI S+ H L +
Sbjct: 168 ILSHNNPEWILTDLACQAYSLTNTALYETLGPNTSEYILNLTEAPILIFAKSNMYHVLKM 227
Query: 78 VP 79
VP
Sbjct: 228 VP 229
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.438
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,882,634
Number of Sequences: 539616
Number of extensions: 5479790
Number of successful extensions: 13297
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 13205
Number of HSP's gapped (non-prelim): 134
length of query: 302
length of database: 191,569,459
effective HSP length: 117
effective length of query: 185
effective length of database: 128,434,387
effective search space: 23760361595
effective search space used: 23760361595
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)