BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035522
(509 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 183/367 (49%), Gaps = 25/367 (6%)
Query: 119 LSGRIPSEIGALSK-LQVLNLSQNHLTGTI-PSEIGSSRNLFQ-LDLSINILNGSIPLEI 175
SG +P + LS L L+LS N+ +G I P+ + +N Q L L N G IP +
Sbjct: 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 414
Query: 176 GNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLD 235
N +L L L N L G IPSS+G+L+KL L L LN L G +P+E+ +K LE L LD
Sbjct: 415 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 474
Query: 236 SNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTI 295
N+LTG IPS L + L L+ N L G +PK +G ++NL IL L N+ +G I + +
Sbjct: 475 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534
Query: 296 GYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPRE--------VGN-L 346
G L LDL+ N +G IP+ + + + GN L
Sbjct: 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
Query: 347 KYLDSRSLDGNNLI-------------GPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393
++ RS N L G PT ++ L++ YN LS IP E+ +
Sbjct: 595 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 654
Query: 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453
L L L HN +SG P E+G+L L LDLS N ++G IP + + ++ +DLS N
Sbjct: 655 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714
Query: 454 NLSGVVP 460
NLSG +P
Sbjct: 715 NLSGPIP 721
Score = 140 bits (353), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 184/364 (50%), Gaps = 9/364 (2%)
Query: 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINI 166
NL +S F +G IP +G S LQ L++S N L+G I + L L++S N
Sbjct: 201 NLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258
Query: 167 LNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSI-GNLTKLTGLNLSLNKLSGRLPREVGN 225
G IP LK L YL L NK G IP + G LTGL+LS N G +P G+
Sbjct: 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316
Query: 226 LKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGPLPKEVGNM-KNLKILLLH 283
+LE L L SNN +G +P TL + L L++N G LP+ + N+ +L L L
Sbjct: 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 376
Query: 284 RNNLTGPISSTIGY--LNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPR 341
NN +GPI + N L+ L L +N G IP T+ G +P
Sbjct: 377 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 436
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
+G+L L L N L G IP + Y+ L +L L +N L+ IP L NC+ L +
Sbjct: 437 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 496
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA 461
LS+N L+G P IG L +L L LS+N +G IP++LG+ ++ +DL+ N +G +PA
Sbjct: 497 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 556
Query: 462 SVRR 465
++ +
Sbjct: 557 AMFK 560
Score = 115 bits (288), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 133/447 (29%), Positives = 186/447 (41%), Gaps = 59/447 (13%)
Query: 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLN 137
G + ++ N + + S+ TC L IS F+ G IP L LQ L+
Sbjct: 220 GDCSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFV-GPIPPL--PLKSLQYLS 275
Query: 138 LSQNHLTGTIPSEI-GSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIP 196
L++N TG IP + G+ L LDLS N G++P G+ L+ L L N G +P
Sbjct: 276 LAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELP 335
Query: 197 SSIGNLTKLTGL---NLSLNKLSGRLPREVGNLKI-LELLYLDSNNLTGPIPSTLYH--L 250
+ L K+ GL +LS N+ SG LP + NL L L L SNN +GPI L
Sbjct: 336 --MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPK 393
Query: 251 NPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNR 310
N L E YL N G +P + N L L L N L+G I S++G L+ L L L N
Sbjct: 394 NTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNM 453
Query: 311 LDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL 370
L+G IP + G +P + N L+ SL N L G IP IG L
Sbjct: 454 LEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEI--------------- 415
NL L L N S +IP EL +C L L L+ N +G P+ +
Sbjct: 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 416 -----------------GNLTHLRQL--------------DLSHNFINGTIPSQLGNIPN 444
GNL + + +++ G N +
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 445 ISAVDLSKNNLSGVVPASVRRIPKLIV 471
+ +D+S N LSG +P + +P L +
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFI 660
Score = 77.0 bits (188), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLD 192
+ L++S N L+G IP EIGS LF L+L N ++GSIP E+G+L+ L+ L L NKLD
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 193 GLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL 229
G IP ++ LT LT ++LS N LSG +P E+G +
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETF 729
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 48/217 (22%)
Query: 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPS----------------- 149
NL K+S F SG IP+E+G L L+L+ N GTIP+
Sbjct: 515 NLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 573
Query: 150 ------------EIGSSRNLFQL-----------------DLSINILNGSIPLEIGNLKD 180
E + NL + +++ + G N
Sbjct: 574 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 633
Query: 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240
+ +L + N L G IP IG++ L LNL N +SG +P EVG+L+ L +L L SN L
Sbjct: 634 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 693
Query: 241 GPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNL 277
G IP + L L E L+ NNL GP+P E+G +
Sbjct: 694 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETF 729
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 301 LEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREV-GNLKY-------LDSR 352
L LDLS N L GP+ + P +V G LK L +
Sbjct: 102 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 161
Query: 353 SLDGNNLIGPI--------------------PPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
S+ G N++G + + NL L++ N S+ I P L
Sbjct: 162 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLG 220
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIP---------------S 437
+CS LQ+L +S N LSG F I T L+ L++S N G IP
Sbjct: 221 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 280
Query: 438 QLGNIPN--------ISAVDLSKNNLSGVVP 460
G IP+ ++ +DLS N+ G VP
Sbjct: 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 311
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 130/367 (35%), Positives = 183/367 (49%), Gaps = 25/367 (6%)
Query: 119 LSGRIPSEIGALSK-LQVLNLSQNHLTGTI-PSEIGSSRNLFQ-LDLSINILNGSIPLEI 175
SG +P + LS L L+LS N+ +G I P+ + +N Q L L N G IP +
Sbjct: 352 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTL 411
Query: 176 GNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLD 235
N +L L L N L G IPSS+G+L+KL L L LN L G +P+E+ +K LE L LD
Sbjct: 412 SNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILD 471
Query: 236 SNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTI 295
N+LTG IPS L + L L+ N L G +PK +G ++NL IL L N+ +G I + +
Sbjct: 472 FNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 531
Query: 296 GYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPRE--------VGN-L 346
G L LDL+ N +G IP+ + + + GN L
Sbjct: 532 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 591
Query: 347 KYLDSRSLDGNNLI-------------GPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393
++ RS N L G PT ++ L++ YN LS IP E+ +
Sbjct: 592 EFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGS 651
Query: 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453
L L L HN +SG P E+G+L L LDLS N ++G IP + + ++ +DLS N
Sbjct: 652 MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 711
Query: 454 NLSGVVP 460
NLSG +P
Sbjct: 712 NLSGPIP 718
Score = 140 bits (353), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 129/364 (35%), Positives = 184/364 (50%), Gaps = 9/364 (2%)
Query: 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINI 166
NL +S F +G IP +G S LQ L++S N L+G I + L L++S N
Sbjct: 198 NLEFLDVSSNNFSTG-IPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 255
Query: 167 LNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSI-GNLTKLTGLNLSLNKLSGRLPREVGN 225
G IP LK L YL L NK G IP + G LTGL+LS N G +P G+
Sbjct: 256 FVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 313
Query: 226 LKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGPLPKEVGNM-KNLKILLLH 283
+LE L L SNN +G +P TL + L L++N G LP+ + N+ +L L L
Sbjct: 314 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLS 373
Query: 284 RNNLTGPISSTIGY--LNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPR 341
NN +GPI + N L+ L L +N G IP T+ G +P
Sbjct: 374 SNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS 433
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
+G+L L L N L G IP + Y+ L +L L +N L+ IP L NC+ L +
Sbjct: 434 SLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWIS 493
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA 461
LS+N L+G P IG L +L L LS+N +G IP++LG+ ++ +DL+ N +G +PA
Sbjct: 494 LSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPA 553
Query: 462 SVRR 465
++ +
Sbjct: 554 AMFK 557
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 103/293 (35%), Positives = 139/293 (47%), Gaps = 22/293 (7%)
Query: 118 FLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGN 177
+LSG IPS +G+LSKL+ L L N L G IP E+ + L L L N L G IP + N
Sbjct: 426 YLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSN 485
Query: 178 LKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237
+L+++ L N+L G IP IG L L L LS N SG +P E+G+ + L L L++N
Sbjct: 486 CTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTN 545
Query: 238 NLTGPIPSTLYHLNPLIEW-YLAYNNLV----GPLPKEVGNMKNLKIL----------LL 282
G IP+ ++ + I ++A V + KE NL L
Sbjct: 546 LFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLS 605
Query: 283 HRN--NLT-----GPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXX 335
RN N+T G S T + LD+S+N L G IP IG
Sbjct: 606 TRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDI 665
Query: 336 XGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIP 388
G +P EVG+L+ L+ L N L G IP + LT LT ++L N LS IP
Sbjct: 666 SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 718
Score = 115 bits (288), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 121/395 (30%), Positives = 167/395 (42%), Gaps = 55/395 (13%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEI-GSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188
L LQ L+L++N TG IP + G+ L LDLS N G++P G+ L+ L L
Sbjct: 265 LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSS 324
Query: 189 NKLDGLIPSSIGNLTKLTGL---NLSLNKLSGRLPREVGNLKI-LELLYLDSNNLTGPIP 244
N G +P + L K+ GL +LS N+ SG LP + NL L L L SNN +GPI
Sbjct: 325 NNFSGELP--MDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPIL 382
Query: 245 STLYH--LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLE 302
L N L E YL N G +P + N L L L N L+G I S++G L+ L
Sbjct: 383 PNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLR 442
Query: 303 ILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGP 362
L L N L+G IP + G +P + N L+ SL N L G
Sbjct: 443 DLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGE 502
Query: 363 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEI------- 415
IP IG L NL L L N S +IP EL +C L L L+ N +G P+ +
Sbjct: 503 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI 562
Query: 416 -------------------------GNLTHLRQL--------------DLSHNFINGTIP 436
GNL + + +++ G
Sbjct: 563 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTS 622
Query: 437 SQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIV 471
N ++ +D+S N LSG +P + +P L +
Sbjct: 623 PTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFI 657
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 46/97 (47%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLD 192
+ L++S N L+G IP EIGS LF L+L N ++GSIP E+G+L+ L+ L L NKLD
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 193 GLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL 229
G IP ++ LT LT ++LS N LSG +P E+G +
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETF 726
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 65/217 (29%), Positives = 92/217 (42%), Gaps = 48/217 (22%)
Query: 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPS----------------- 149
NL K+S F SG IP+E+G L L+L+ N GTIP+
Sbjct: 512 NLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGK 570
Query: 150 ------------EIGSSRNLFQL-----------------DLSINILNGSIPLEIGNLKD 180
E + NL + +++ + G N
Sbjct: 571 RYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGS 630
Query: 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240
+ +L + N L G IP IG++ L LNL N +SG +P EVG+L+ L +L L SN L
Sbjct: 631 MMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLD 690
Query: 241 GPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNL 277
G IP + L L E L+ NNL GP+P E+G +
Sbjct: 691 GRIPQAMSALTMLTEIDLSNNNLSGPIP-EMGQFETF 726
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/211 (27%), Positives = 80/211 (37%), Gaps = 52/211 (24%)
Query: 301 LEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREV-GNLKY-------LDSR 352
L LDLS N L GP+ + P +V G LK L +
Sbjct: 99 LTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSAN 158
Query: 353 SLDGNNLIGPI--------------------PPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
S+ G N++G + + NL L++ N S+ I P L
Sbjct: 159 SISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGI-PFLG 217
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIP---------------S 437
+CS LQ+L +S N LSG F I T L+ L++S N G IP
Sbjct: 218 DCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENK 277
Query: 438 QLGNIPN--------ISAVDLSKNNLSGVVP 460
G IP+ ++ +DLS N+ G VP
Sbjct: 278 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVP 308
>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase
Inhibiting Protein), A Leucine Rich Repeat Protein
Involved In Plant Defense
Length = 313
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/295 (30%), Positives = 140/295 (47%), Gaps = 29/295 (9%)
Query: 35 DASSAIQLEREALLNSGWWNSSWATANYTSDHC--KWMGITCNSAGSIVEISSYEMDNNG 92
D + +Q++++ L + SSW T+D C W+G+ C++ + +Y ++N
Sbjct: 7 DKQALLQIKKD--LGNPTTLSSWLP---TTDCCNRTWLGVLCDT-----DTQTYRVNN-- 54
Query: 93 NAAELSQFNF----------TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH 142
+LS N P L I G L G IP I L++L L ++ +
Sbjct: 55 --LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTN 112
Query: 143 LTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNL 202
++G IP + + L LD S N L+G++P I +L +L + GN++ G IP S G+
Sbjct: 113 VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSF 172
Query: 203 TKL-TGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261
+KL T + +S N+L+G++P NL L + L N L G + +LA N
Sbjct: 173 SKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 262 NLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316
+L L K VG KNL L L N + G + + L L L++S N L G IP
Sbjct: 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 78.6 bits (192), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 82/287 (28%), Positives = 122/287 (42%), Gaps = 41/287 (14%)
Query: 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYL 234
+G L D D + N LD L+GLNL +P + NL L LY+
Sbjct: 39 LGVLCDTDTQTYRVNNLD------------LSGLNL---PKPYPIPSSLANLPYLNFLYI 83
Query: 235 DS-NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISS 293
NNL GPIP + L L Y+ + N+ G +P + +K L L N L+G +
Sbjct: 84 GGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPP 143
Query: 294 TIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRS 353
+I L L + NR+ G IP + G K S +
Sbjct: 144 SISSLPNLVGITFDGNRISGAIPDSYGSFS-----------------------KLFTSMT 180
Query: 354 LDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPS 413
+ N L G IPPT L NL ++L N L + Q + L+ N+L+
Sbjct: 181 ISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-G 238
Query: 414 EIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
++G +L LDL +N I GT+P L + + ++++S NNL G +P
Sbjct: 239 KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP 285
Score = 68.6 bits (166), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 63/135 (46%), Gaps = 25/135 (18%)
Query: 339 LPREVGNLKYLDSRSLDG-NNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 397
+P + NL YL+ + G NNL+GPIPP I LT QL
Sbjct: 68 IPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT------------------------QL 103
Query: 398 QNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSG 457
L ++H +SG P + + L LD S+N ++GT+P + ++PN+ + N +SG
Sbjct: 104 HYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISG 163
Query: 458 VVPASVRRIPKLIVS 472
+P S KL S
Sbjct: 164 AIPDSYGSFSKLFTS 178
>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex
Length = 466
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 98/322 (30%), Positives = 154/322 (47%), Gaps = 52/322 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 68 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 123
Query: 216 SGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMK 275
+ P + NL L L L SN ++ S L L L + L++ N V L K + N+
Sbjct: 124 TDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQ--LSFGNQVTDL-KPLANLT 176
Query: 276 NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXX 335
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 177 TLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------- 215
Query: 336 XGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 216 -------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LSG 262
Query: 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L N
Sbjct: 263 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFN 318
Query: 454 NLSGVVP-ASVRRIPKLIVSEN 474
N+S + P +S+ ++ +L + N
Sbjct: 319 NISDISPVSSLTKLQRLFFANN 340
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 6/92 (6%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426
+ YL NLT +N NQL+ P L N ++L ++++++N ++ I P + NLT+L L L
Sbjct: 63 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 118
Query: 427 SHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
+N I P L N+ N++ ++LS N +S +
Sbjct: 119 FNNQITDIDP--LKNLTNLNRLELSSNTISDI 148
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 116/276 (42%), Gaps = 70/276 (25%)
Query: 127 IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLML 186
+ L+ L+ L++S N ++ S + NL L + N ++ PL I L +LD L L
Sbjct: 172 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPLGI--LTNLDELSL 227
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPST 246
GN+L + ++ +LT LT L+L+ N++S P + L L L L +N ++ P
Sbjct: 228 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 281
Query: 247 LYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT--GPISSTIGYLNLLEIL 304
L L L L N L P + N+KNL L L+ NN++ P+SS L L+ L
Sbjct: 282 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS----LTKLQRL 335
Query: 305 DLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIP 364
++N++ D SL
Sbjct: 336 FFANNKVS-------------------------------------DVSSL---------- 348
Query: 365 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 400
LTN+ L+ G+NQ+S P L N +++ L
Sbjct: 349 ---ANLTNINWLSAGHNQISDLTP--LANLTRITQL 379
>pdb|2OMU|A Chain A, Crystal Structure Of Inla G194s+s Y369s/hec1 Complex
Length = 462
Score = 62.8 bits (151), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 97/323 (30%), Positives = 152/323 (47%), Gaps = 53/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + + N + P + N+
Sbjct: 120 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 212
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 258
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L S N
Sbjct: 315 NNISDISPVSSLTKLQRLFFSNN 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 54 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 101
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 147/321 (45%), Gaps = 26/321 (8%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
L+KL + ++ N + P + + NL L L N + PL+ NL +L+ L L N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSN 139
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
+ + S++ LT L L+ S N+++ P + NL LE L + SN ++ S L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309
L L E +A NN + + +G + NL L L+ N L T+ L L LDL++N
Sbjct: 194 LTNL-ESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 310 RLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369
++ P + + P + L L + L+ N L P I
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L NLT L L +N +S P + + ++LQ L S+N +S + S + NLT++ L HN
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 430 FINGTIPSQLGNIPNISAVDL 450
I+ P L N+ I+ + L
Sbjct: 360 QISDLTP--LANLTRITQLGL 378
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 84/307 (27%), Positives = 125/307 (40%), Gaps = 91/307 (29%)
Query: 119 LSGRIPSEIGALS---KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLS------INILNG 169
LS S+I ALS LQ L+ S N +T P + + L +LD+S I++L
Sbjct: 136 LSSNTISDISALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDISVLAK 193
Query: 170 SIPLE--------------IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
LE +G L +LD L L GN+L + ++ +LT LT L+L+ N++
Sbjct: 194 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQI 251
Query: 216 SGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMK 275
S P + L L L L +N ++ P L L L L N L P + N+K
Sbjct: 252 SNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLK 305
Query: 276 NLKILLLHRNNLT--GPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXX 333
NL L L+ NN++ P+SS L L+ L S+N++
Sbjct: 306 NLTYLTLYFNNISDISPVSS----LTKLQRLFFSNNKVS--------------------- 340
Query: 334 XXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393
D SL LTN+ L+ G+NQ+S P L N
Sbjct: 341 ----------------DVSSL-------------ANLTNINWLSAGHNQISDLTP--LAN 369
Query: 394 CSQLQNL 400
+++ L
Sbjct: 370 LTRITQL 376
>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex
pdb|2OMW|A Chain A, Crystal Structure Of Inla S192n Y369s/mec1 Complex
Length = 461
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 100/323 (30%), Positives = 154/323 (47%), Gaps = 54/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + L + N V L K + N+
Sbjct: 120 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQ--LNFGNQVTDL-KPLANL 171
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 211
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 212 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 257
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 258 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L S N
Sbjct: 314 NNISDISPVSSLTKLQRLFFSNN 336
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 54 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 101
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 146/321 (45%), Gaps = 27/321 (8%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
L+KL + ++ N + P + + NL L L N + PL+ NL +L+ L L N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSN 139
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
+ + S++ LT L LN N+++ P + NL LE L + SN ++ S L
Sbjct: 140 TISDI--SALSGLTSLQQLNFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 192
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309
L L E +A NN + + +G + NL L L+ N L T+ L L LDL++N
Sbjct: 193 LTNL-ESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 248
Query: 310 RLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369
++ P + + P + L L + L+ N L P I
Sbjct: 249 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 302
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L NLT L L +N +S P + + ++LQ L S+N +S + S + NLT++ L HN
Sbjct: 303 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFSNNKVSDV--SSLANLTNINWLSAGHN 358
Query: 430 FINGTIPSQLGNIPNISAVDL 450
I+ P L N+ I+ + L
Sbjct: 359 QISDLTP--LANLTRITQLGL 377
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 74/276 (26%), Positives = 116/276 (42%), Gaps = 70/276 (25%)
Query: 127 IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLML 186
+ L+ L+ L++S N ++ S + NL L + N ++ PL G L +LD L L
Sbjct: 168 LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITPL--GILTNLDELSL 223
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPST 246
GN+L + ++ +LT LT L+L+ N++S P + L L L L +N ++ P
Sbjct: 224 NGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP-- 277
Query: 247 LYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT--GPISSTIGYLNLLEIL 304
L L L L N L P + N+KNL L L+ NN++ P+SS L L+ L
Sbjct: 278 LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISPVSS----LTKLQRL 331
Query: 305 DLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIP 364
S+N++ D SL
Sbjct: 332 FFSNNKVS-------------------------------------DVSSL---------- 344
Query: 365 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 400
LTN+ L+ G+NQ+S P L N +++ L
Sbjct: 345 ---ANLTNINWLSAGHNQISDLTP--LANLTRITQL 375
>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human)
Recognition Complex
pdb|1O6T|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|A Chain A, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
pdb|1O6V|B Chain B, Internalin (Inla,Listeria Monocytogenes) - Functional
Domain, Uncomplexed
Length = 466
Score = 61.6 bits (148), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 154/323 (47%), Gaps = 54/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 69 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 124
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + L++ N V L K + N+
Sbjct: 125 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQ--LSFGNQVTDL-KPLANL 176
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 177 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 216
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 217 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 262
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 263 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 318
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L N
Sbjct: 319 NNISDISPVSSLTKLQRLFFYNN 341
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 59 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 107 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 149
>pdb|2OMT|A Chain A, Crystal Structure Of Inla G194s+sHEC1 COMPLEX
Length = 462
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 151/323 (46%), Gaps = 53/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + + N + P + N+
Sbjct: 120 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQLSFSSNQVTDLKP--LANL 172
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 212
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 258
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L N
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNN 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 54 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 101
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 91/321 (28%), Positives = 146/321 (45%), Gaps = 26/321 (8%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
L+KL + ++ N + P + + NL L L N + PL+ NL +L+ L L N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSN 139
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
+ + S++ LT L L+ S N+++ P + NL LE L + SN ++ S L
Sbjct: 140 TISDI--SALSGLTSLQQLSFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309
L L E +A NN + + +G + NL L L+ N L T+ L L LDL++N
Sbjct: 194 LTNL-ESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 310 RLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369
++ P + + P + L L + L+ N L P I
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L NLT L L +N +S P + + ++LQ L +N +S + S + NLT++ L HN
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 430 FINGTIPSQLGNIPNISAVDL 450
I+ P L N+ I+ + L
Sbjct: 360 QISDLTP--LANLTRITQLGL 378
>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex
Length = 461
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 99/323 (30%), Positives = 153/323 (47%), Gaps = 54/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + L + N V L K + N+
Sbjct: 120 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQ--LNFGNQVTDL-KPLANL 171
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 172 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 211
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 212 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 257
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 258 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 313
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L N
Sbjct: 314 NNISDISPVSSLTKLQRLFFYNN 336
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 54 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 101
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
>pdb|2OMX|A Chain A, Crystal Structure Of Inla S192n G194s+sHEC1 COMPLEX
Length = 462
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 96/323 (29%), Positives = 151/323 (46%), Gaps = 53/323 (16%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
NL Q++ S N L PL+ NL L +++ N++ + P + NLT LTGL L N++
Sbjct: 64 NLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQI 119
Query: 216 SGRLP-REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM 274
+ P + + NL LEL S+N I S L L L + + N + P + N+
Sbjct: 120 TDIDPLKNLTNLNRLEL----SSNTISDI-SALSGLTSLQQLNFSSNQVTDLKP--LANL 172
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXX 334
L+ L + N ++ S + L LE L ++N++ P
Sbjct: 173 TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP------------------ 212
Query: 335 XXGLLPREVGNLKYLDSRSLDGNNL--IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELM 392
+G L LD SL+GN L IG T+ LTNLT L+L NQ+S+ P L
Sbjct: 213 --------LGILTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQISNLAP--LS 258
Query: 393 NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452
++L L L N +S I P + LT L L+L+ N + P + N+ N++ + L
Sbjct: 259 GLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF 314
Query: 453 NNLSGVVP-ASVRRIPKLIVSEN 474
NN+S + P +S+ ++ +L N
Sbjct: 315 NNISDISPVSSLTKLQRLFFYNN 337
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/107 (32%), Positives = 60/107 (56%), Gaps = 16/107 (14%)
Query: 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411
+S+DG + YL NLT +N NQL+ P L N ++L ++++++N ++ I
Sbjct: 54 KSIDG----------VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 101
Query: 412 PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
P + NLT+L L L +N I P L N+ N++ ++LS N +S +
Sbjct: 102 P--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI 144
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 92/321 (28%), Positives = 146/321 (45%), Gaps = 26/321 (8%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
L+KL + ++ N + P + + NL L L N + PL+ NL +L+ L L N
Sbjct: 84 LTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLK--NLTNLNRLELSSN 139
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
+ + S++ LT L LN S N+++ P + NL LE L + SN ++ S L
Sbjct: 140 TISDI--SALSGLTSLQQLNFSSNQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAK 193
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309
L L E +A NN + + +G + NL L L+ N L T+ L L LDL++N
Sbjct: 194 LTNL-ESLIATNNQISDI-TPLGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANN 249
Query: 310 RLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369
++ P + + P + L L + L+ N L P I
Sbjct: 250 QISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISN 303
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L NLT L L +N +S P + + ++LQ L +N +S + S + NLT++ L HN
Sbjct: 304 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN 359
Query: 430 FINGTIPSQLGNIPNISAVDL 450
I+ P L N+ I+ + L
Sbjct: 360 QISDLTP--LANLTRITQLGL 378
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 147/339 (43%), Gaps = 44/339 (12%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQ 187
G ++ ++L+L +N + E S +L +L+L+ NI++ P NL +L L L+
Sbjct: 29 GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88
Query: 188 GNKLDGLIPSSIGN-LTKLTGLNLSLNK---LSGRLPREVGNLKILE-----LLYLDSNN 238
N+L LIP + L+ LT L++S NK L + +++ NLK LE L+Y+
Sbjct: 89 SNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRA 147
Query: 239 LTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYL 298
+G LN L + L NL + + ++ L +L L N+ + L
Sbjct: 148 FSG--------LNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199
Query: 299 NLLEILDLSH-NRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGN 357
L++L++SH LD P+ + GL L S S+
Sbjct: 200 YRLKVLEISHWPYLDTMTPNCL----------------YGL---------NLTSLSITHC 234
Query: 358 NLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN 417
NL + +L L LNL YN +S+ L +LQ + L L+ + P
Sbjct: 235 NLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRG 294
Query: 418 LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456
L +LR L++S N + S ++ N+ + L N L+
Sbjct: 295 LNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 39/114 (34%), Positives = 63/114 (55%), Gaps = 8/114 (7%)
Query: 84 SSYEMDNNGNAAELSQFN-FTCFPNLITFKISGTGFLSG----RIPSEIGALSKLQVLNL 138
S Y+ D +A +LS F N+ + +L+G +P+EI LS L+VL+L
Sbjct: 219 SKYD-DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDL 277
Query: 139 SQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLD 192
S N LT ++P+E+GS L N++ ++P E GNL +L +L ++GN L+
Sbjct: 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLE 329
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 3/87 (3%)
Query: 343 VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 402
+ +L L+GN+L +P I L+NL L+L +N+L +S+P EL +C QL+
Sbjct: 243 IFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRL-TSLPAELGSCFQLKYFYF 300
Query: 403 SHNTLSGIFPSEIGNLTHLRQLDLSHN 429
N ++ + P E GNL +L+ L + N
Sbjct: 301 FDNMVTTL-PWEFGNLCNLQFLGVEGN 326
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 69/159 (43%), Gaps = 31/159 (19%)
Query: 160 LDLS-INILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGR 218
LDLS + I N I I L L L GN L L P+ I NL+ L L+LS N+L+
Sbjct: 229 LDLSNLQIFN--ISANIFKYDFLTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLTS- 284
Query: 219 LPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLK 278
LP E+G+ L+ Y ++N+V LP E GN+ NL+
Sbjct: 285 LPAELGSCFQLKYFYF-------------------------FDNMVTTLPWEFGNLCNLQ 319
Query: 279 ILLLHRNNLTGPISSTIGYLNLLE-ILDLSHNRLDGPIP 316
L + N L + ++ I L NR + P+P
Sbjct: 320 FLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP 358
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 65/148 (43%), Gaps = 25/148 (16%)
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINI-LNG----SIPLEIGNLKDLDYL 184
LS LQ+ N+S N +F+ D + LNG +P EI NL +L L
Sbjct: 231 LSNLQIFNISAN---------------IFKYDFLTRLYLNGNSLTELPAEIKNLSNLRVL 275
Query: 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIP 244
L N+L L P+ +G+ +L + + LP E GNL L+ L ++ N L
Sbjct: 276 DLSHNRLTSL-PAELGSCFQLKYFYF-FDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFL 333
Query: 245 STLYH--LNPLIEWYLAYNNLVGPLPKE 270
L + LI +YL N PLP E
Sbjct: 334 KILTEKSVTGLI-FYLRDNRPEIPLPHE 360
Score = 35.0 bits (79), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 34/45 (75%), Gaps = 2/45 (4%)
Query: 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGN 441
L L L+ N+L+ + P+EI NL++LR LDLSHN + ++P++LG+
Sbjct: 249 LTRLYLNGNSLTEL-PAEIKNLSNLRVLDLSHNRLT-SLPAELGS 291
>pdb|1XCD|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 1
pdb|1XEC|A Chain A, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
pdb|1XEC|B Chain B, Dimeric Bovine Tissue-Extracted Decorin, Crystal Form 2
Length = 329
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 29/251 (11%)
Query: 208 LNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPL 267
L+L NK++ + NLK L L L +N ++ P L L YL+ N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 268 PKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXX 327
P+++ K L+ L +H N +T S LN + +++L N P+ S+
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN----PLKSS--------- 160
Query: 328 XXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSI 387
G+ +K L + N I IP G +LT L+L N+++
Sbjct: 161 ---------GIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITKVD 208
Query: 388 PPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISA 447
L + L L LS N++S + + N HLR+L L++N + +P L + I
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQV 267
Query: 448 VDLSKNNLSGV 458
V L NN+S +
Sbjct: 268 VYLHNNNISAI 278
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 160 LDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRL 219
LDL N + + NLK+L L+L NK+ + P + L KL L LS N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 220 PREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNL 263
P ++ K L+ L + N +T S LN +I L N L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 360 IGPIPP--TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN 417
+GP+ P +L + +LG ++ +PP+ L L +N ++ I + N
Sbjct: 21 MGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL------LDLQNNKITEIKDGDFKN 74
Query: 418 LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNL 476
L +L L L +N I+ P + + + LSKN L + + + +L V EN +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIG---NLKDLDYLMLQGN 189
LQ L + +N +T S + ++L N L S +E G +K L Y+ +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADT 181
Query: 190 KL----DGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPS 245
+ GL PS LT L+L NK++ + L L L L N+++
Sbjct: 182 NITTIPQGLPPS-------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 246 TLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG 289
+L + L E +L N LV +P + + K ++++ LH NN++
Sbjct: 235 SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|1XKU|A Chain A, Crystal Structure Of The Dimeric Protein Core Of Decorin,
The Archetypal Small Leucine-Rich Repeat Proteoglycan
Length = 330
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 109/251 (43%), Gaps = 29/251 (11%)
Query: 208 LNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPL 267
L+L NK++ + NLK L L L +N ++ P L L YL+ N L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQL-KEL 115
Query: 268 PKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXX 327
P+++ K L+ L +H N +T S LN + +++L N P+ S+
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTN----PLKSS--------- 160
Query: 328 XXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSI 387
G+ +K L + N I IP G +LT L+L N+++
Sbjct: 161 ---------GIENGAFQGMKKLSYIRIADTN-ITTIPQ--GLPPSLTELHLDGNKITKVD 208
Query: 388 PPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISA 447
L + L L LS N++S + + N HLR+L L++N + +P L + I
Sbjct: 209 AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKL-VKVPGGLADHKYIQV 267
Query: 448 VDLSKNNLSGV 458
V L NN+S +
Sbjct: 268 VYLHNNNISAI 278
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 49/104 (47%), Gaps = 3/104 (2%)
Query: 160 LDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRL 219
LDL N + + NLK+L L+L NK+ + P + L KL L LS N+L L
Sbjct: 57 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLK-EL 115
Query: 220 PREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNL 263
P ++ K L+ L + N +T S LN +I L N L
Sbjct: 116 PEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPL 157
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 53/119 (44%), Gaps = 8/119 (6%)
Query: 360 IGPIPP--TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN 417
+GP+ P +L + +LG ++ +PP+ L L +N ++ I + N
Sbjct: 21 MGPVCPFRCQCHLRVVQCSDLGLEKVPKDLPPDTAL------LDLQNNKITEIKDGDFKN 74
Query: 418 LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNL 476
L +L L L +N I+ P + + + LSKN L + + + +L V EN +
Sbjct: 75 LKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEI 133
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 43/164 (26%), Positives = 73/164 (44%), Gaps = 16/164 (9%)
Query: 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIG---NLKDLDYLMLQGN 189
LQ L + +N +T S + ++L N L S +E G +K L Y+ +
Sbjct: 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADT 181
Query: 190 KL----DGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPS 245
+ GL PS LT L+L NK++ + L L L L N+++
Sbjct: 182 NITTIPQGLPPS-------LTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNG 234
Query: 246 TLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG 289
+L + L E +L N LV +P + + K ++++ LH NN++
Sbjct: 235 SLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISA 277
>pdb|4ECO|A Chain A, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
pdb|4ECO|B Chain B, Crystal Structure Of A Hypothetical Protein (Bacegg_03329)
From Bacteroides Eggerthii Dsm 20697 At 2.70 A
Resolution
Length = 636
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 65/238 (27%), Positives = 103/238 (43%), Gaps = 28/238 (11%)
Query: 229 LELLYLDSNNL-TGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNL 287
++++Y+ NNL T P+ ++L L YN L G LP G+ L L L N +
Sbjct: 307 IQIIYIGYNNLKTFPVETSLQKXKKLGXLECLYNQLEGKLPA-FGSEIKLASLNLAYNQI 365
Query: 288 TGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLK 347
T ++ G+ +E L +HN+L IP+ +
Sbjct: 366 TEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVXSAI--------------DFS 410
Query: 348 YLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNT 406
Y + S+DG N P+ PT N++S+NL NQ+ S P EL + S L ++ L N
Sbjct: 411 YNEIGSVDGKNF-DPLDPTPFKGINVSSINLSNNQI-SKFPKELFSTGSPLSSINLXGNX 468
Query: 407 LSGI----FPSEIGNLTH---LRQLDLSHNFING-TIPSQLGNIPNISAVDLSKNNLS 456
L+ I E N + L +DL N + + + +P + +DLS N+ S
Sbjct: 469 LTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFS 526
>pdb|4FMZ|A Chain A, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
pdb|4FMZ|B Chain B, Crystal Structure Of An Internalin (Inlf) From Listeria
Monocytogenes Str. 4b F2365 At 1.91 A Resolution
Length = 347
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 76/286 (26%), Positives = 134/286 (46%), Gaps = 19/286 (6%)
Query: 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYL 234
I L +L+YL L GN++ + P + NL KLT L + NK++ + NL L LYL
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD--ISALQNLTNLRELYL 117
Query: 235 DSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISST 294
+ +N++ P L +L L N+ + L + N L L + + + +
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSP-LSNXTGLNYLTVTESKVKDV--TP 172
Query: 295 IGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSL 354
I L L L L++N+++ P + + P V N L+S +
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANXTRLNSLKI 228
Query: 355 DGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSE 414
GNN I + P + L+ LT L +G NQ+S + + ++L+ L + N +S I S
Sbjct: 229 -GNNKITDLSP-LANLSQLTWLEIGTNQISD--INAVKDLTKLKXLNVGSNQISDI--SV 282
Query: 415 IGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
+ NL+ L L L++N + +G + N++ + LS+N+++ + P
Sbjct: 283 LNNLSQLNSLFLNNNQLGNEDXEVIGGLTNLTTLFLSQNHITDIRP 328
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/97 (39%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426
I YLTNL LNL NQ++ P L N +L NL + N ++ I S + NLT+LR+L L
Sbjct: 62 IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLRELYL 117
Query: 427 SHNFINGTIPSQLGNIPNISAVDLSKN-NLSGVVPAS 462
+ + I+ P L N+ +++L N NLS + P S
Sbjct: 118 NEDNISDISP--LANLTKXYSLNLGANHNLSDLSPLS 152
>pdb|3A79|B Chain B, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
Length = 562
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 6/160 (3%)
Query: 160 LDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSI--GNLTKLTGLNLSLNKL-S 216
L+ + N+ S+ LK L L+LQ N L ++ N++ L L++SLN L S
Sbjct: 358 LNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNS 417
Query: 217 GRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKN 276
R + + +L L SN LTG S L P ++ +NN + +PK+V +++
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTG---SVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQA 474
Query: 277 LKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316
L+ L + N L L L+ + L N D P
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCP 514
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 5/95 (5%)
Query: 122 RIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDL 181
R+P +I LS+L+VL LS N + +++L LD+S N L + +L+ L
Sbjct: 68 RMP-DISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNISCCPMASLRHL 126
Query: 182 DYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKL 215
D L N D L + GNLTKLT L LS K
Sbjct: 127 D---LSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF 158
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 58/129 (44%), Gaps = 10/129 (7%)
Query: 130 LSKLQVLNLSQNHL-TGTIPSEIGSSRNLFQLDLSINILNGSIPLEIG-NLKDLDYLMLQ 187
+S L+ L++S N L + + ++ L+LS N+L GS+ + +K LD L
Sbjct: 402 MSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLD---LH 458
Query: 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTL 247
N++ IP + +L L LN++ N+L L L+ ++L N P
Sbjct: 459 NNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGIR 517
Query: 248 YHLNPLIEW 256
Y L EW
Sbjct: 518 Y----LSEW 522
>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex
Length = 599
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L +L++L L N + S P + L+NLV L+ + IG L L++L+++HN
Sbjct: 74 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 133
Query: 430 FINGT-IPSQLGNIPNISAVDLSKNNLSGV 458
FI+ +P+ N+ N+ VDLS N + +
Sbjct: 134 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 163
>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ1|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX
pdb|3VQ2|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
pdb|3VQ2|B Chain B, Crystal Structure Of Mouse Tlr4MD-2LPS COMPLEX
Length = 606
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 49/90 (54%), Gaps = 1/90 (1%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L +L++L L N + S P + L+NLV L+ + IG L L++L+++HN
Sbjct: 79 LHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHN 138
Query: 430 FINGT-IPSQLGNIPNISAVDLSKNNLSGV 458
FI+ +P+ N+ N+ VDLS N + +
Sbjct: 139 FIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors A29
Length = 270
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 63/244 (25%), Positives = 87/244 (35%), Gaps = 35/244 (14%)
Query: 74 CNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPS----EIGA 129
C G + +NN N+ + S T P+ I S ++ S
Sbjct: 5 CKKDGGVCSC-----NNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHR 59
Query: 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
L+KL++L L+ N L T+P+ I LK+L+ L + N
Sbjct: 60 LTKLRLLYLNDNKLQ-TLPAGI-----------------------FKELKNLETLWVTDN 95
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
KL L L L L L N+L PR +L L L L N L
Sbjct: 96 KLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDK 155
Query: 250 LNPLIEWYLAYNNLVGPLPK-EVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSH 308
L L E L YNN + +P+ + LK L L N L L L++L L
Sbjct: 156 LTSLKELRL-YNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQE 214
Query: 309 NRLD 312
N D
Sbjct: 215 NPWD 218
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 68/177 (38%), Gaps = 2/177 (1%)
Query: 278 KILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXG 337
K L L N L+ S L L +L L+ N+L +P+ I
Sbjct: 40 KKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKLQ 98
Query: 338 LLPREV-GNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 396
LP V L L LD N L P LT LT L+LGYN+L S +
Sbjct: 99 ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTS 158
Query: 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453
L+ L L +N L + LT L+ L L +N + ++ + + L +N
Sbjct: 159 LKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
>pdb|2WFH|A Chain A, The Human Slit 2 Dimerization Domain D4
pdb|2WFH|B Chain B, The Human Slit 2 Dimerization Domain D4
Length = 193
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/119 (32%), Positives = 56/119 (47%), Gaps = 6/119 (5%)
Query: 122 RIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDL 181
R P+E L V+ S L +P G R++ +L L N +P E+ N K L
Sbjct: 3 RCPTECTCLD--TVVRCSNKGLK-VLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHL 56
Query: 182 DYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240
+ L N++ L S N+T+L L LS N+L PR LK L LL L N+++
Sbjct: 57 TLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 36.6 bits (83), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 53/117 (45%), Gaps = 7/117 (5%)
Query: 339 LPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 398
+PR+V L LDGN +P + +LT ++L N++S+ N +QL
Sbjct: 29 IPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 399 NLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
L+LS+N L I P L LR L L N I+ ++ +S + + N L
Sbjct: 82 TLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPL 138
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 30/108 (27%), Positives = 57/108 (52%), Gaps = 3/108 (2%)
Query: 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240
LD ++ NK ++P I +T L L N+ + +P+E+ N K L L+ L +N ++
Sbjct: 11 LDTVVRCSNKGLKVLPKGIPR--DVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS 67
Query: 241 GPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288
+ ++ L+ L+YN L P+ +K+L++L LH N+++
Sbjct: 68 TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDIS 115
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 372 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFI 431
++T L L NQ + +P EL N L + LS+N +S + N+T L L LS+N +
Sbjct: 32 DVTELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90
Query: 432 NGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
P + ++ + L N++S VVP
Sbjct: 91 RCIPPRTFDGLKSLRLLSLHGNDIS-VVP 118
>pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 570
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 54/136 (39%), Gaps = 7/136 (5%)
Query: 90 NNGNAAELSQFN-FTCFPNLITFKISGTGFLSGRIPSE--IGALSKLQVLNLSQNHLT-G 145
+ N ++S+F+ F NLI IS T R+ LS L+VL ++ N
Sbjct: 404 QHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 460
Query: 146 TIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL 205
+P RNL LDLS L P +L L L + N+L + LT L
Sbjct: 461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSL 520
Query: 206 TGLNLSLNKLSGRLPR 221
+ L N PR
Sbjct: 521 QKIWLHTNPWDCSCPR 536
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S PE N + L++L LS N + I+ +++ L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
pdb|4G8A|B Chain B, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g
And T399i In Complex With Md-2 And Lps
Length = 635
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 99 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 158
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 159 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 363 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI--FPSEIGNLTH 420
+P L NLT L+L QL P + S LQ L +SHN + FP + L
Sbjct: 486 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 543
Query: 421 LRQLDLSHNFINGTIPSQLGNIP-NISAVDLSKNNLSGVVPAS-----VRRIPKLIVSEN 474
L+ LD S N I + +L + P +++ ++L++N+ + ++ +L+V
Sbjct: 544 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 603
Query: 475 NLELENSTSSENAP 488
+E + + P
Sbjct: 604 RMECATPSDKQGMP 617
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 39/141 (27%), Positives = 56/141 (39%), Gaps = 7/141 (4%)
Query: 90 NNGNAAELSQFN-FTCFPNLITFKISGTGFLSGRIPSE--IGALSKLQVLNLSQNHLT-G 145
+ N ++S+F+ F NLI IS T R+ LS L+VL ++ N
Sbjct: 428 QHSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQEN 484
Query: 146 TIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL 205
+P RNL LDLS L P +L L L + N L L L
Sbjct: 485 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSL 544
Query: 206 TGLNLSLNKLSGRLPREVGNL 226
L+ SLN + +E+ +
Sbjct: 545 QVLDYSLNHIMTSKKQELQHF 565
Score = 28.9 bits (63), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S PE N + L++L LS N + I+ +++ L +
Sbjct: 144 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 199
>pdb|3ULA|A Chain A, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
pdb|3ULA|C Chain C, Crystal Structure Of The Tv3 Mutant F63w-Md-2-Eritoran
Complex
Length = 279
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 136
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S +P N + L++L LS N + I+ +++ L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3TWI|D Chain D, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|E Chain E, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
pdb|3TWI|F Chain F, Variable Lymphocyte Receptor Recognition Of The
Immunodominant Glycoprotein Of Bacillus Anthracis Spores
Length = 179
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 61/141 (43%), Gaps = 8/141 (5%)
Query: 139 SQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSS 198
Q ++P+ I ++ + L L IN + P +L L YL L N+L L
Sbjct: 26 CQERSLASVPAGIPTTTQV--LHLYINQITKLEPGVFDSLTQLTYLNLAVNQLTALPVGV 83
Query: 199 IGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYL 258
LTKLT L L +N+L NLK L +YL +N LY L W +
Sbjct: 84 FDKLTKLTHLALHINQLKSIPMGVFDNLKSLTHIYLFNNPWDCECSDILY----LKNWIV 139
Query: 259 AYNNLVGPLPKEVGNMKNLKI 279
+ ++V PL G + N+K
Sbjct: 140 QHASIVNPLGN--GGVDNVKC 158
>pdb|3UL9|A Chain A, Structure Of The Tv3 Mutant M41e
Length = 278
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S +P N + L++L LS N + I+ +++ L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|3UL7|A Chain A, Crystal Structure Of The Tv3 Mutant F63w
Length = 278
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 76 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 135
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 136 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S +P N + L++L LS N + I+ +++ L +
Sbjct: 121 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 176
>pdb|2Z62|A Chain A, Crystal Structure Of The Tv3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z65|A Chain A, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
pdb|2Z65|B Chain B, Crystal Structure Of The Human Tlr4 Tv3
Hybrid-Md-2-Eritoran Complex
Length = 276
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S +P N + L++L LS N + I+ +++ L +
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
>pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
pdb|3FXI|B Chain B, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps
Ra Complex
Length = 605
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 75 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN 134
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 135 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175
Score = 35.4 bits (80), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 60/134 (44%), Gaps = 10/134 (7%)
Query: 363 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI--FPSEIGNLTH 420
+P L NLT L+L QL P + S LQ L +SHN + FP + L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LNS 519
Query: 421 LRQLDLSHNFINGTIPSQLGNIP-NISAVDLSKNNLSGVVPAS-----VRRIPKLIVSEN 474
L+ LD S N I + +L + P +++ ++L++N+ + ++ +L+V
Sbjct: 520 LQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVE 579
Query: 475 NLELENSTSSENAP 488
+E + + P
Sbjct: 580 RMECATPSDKQGMP 593
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 56/140 (40%), Gaps = 7/140 (5%)
Query: 91 NGNAAELSQFN-FTCFPNLITFKISGTGFLSGRIPSE--IGALSKLQVLNLSQNHLT-GT 146
+ N ++S+F+ F NLI IS T R+ LS L+VL ++ N
Sbjct: 405 HSNLKQMSEFSVFLSLRNLIYLDISHT---HTRVAFNGIFNGLSSLEVLKMAGNSFQENF 461
Query: 147 IPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLT 206
+P RNL LDLS L P +L L L + N L L L
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 521
Query: 207 GLNLSLNKLSGRLPREVGNL 226
L+ SLN + +E+ +
Sbjct: 522 VLDYSLNHIMTSKKQELQHF 541
Score = 28.5 bits (62), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELM-NCSQLQNLVLSHNTLSGIFPSEI 415
IG+L L LN+ +N + S PE N + L++L LS N + I+ +++
Sbjct: 120 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDL 169
>pdb|3UL8|A Chain A, Crystal Structure Of The Tv3 Mutant V134l
Length = 279
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 51/101 (50%), Gaps = 1/101 (0%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L++L++L L N + S S LQ LV L+ + IG+L L++L+++HN
Sbjct: 77 LSHLSTLILTGNPIQSLALGAFSGLSSLQKLVALETNLASLENFPIGHLKTLKELNVAHN 136
Query: 430 FING-TIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
I +P N+ N+ +DLS N + + +R + ++
Sbjct: 137 LIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 1/56 (1%)
Query: 367 IGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHL 421
IG+L L LN+ +N + S +P N + L++L LS N + I+ +++ L +
Sbjct: 122 IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 177
>pdb|3E6J|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor (Vlr)
Rbc36 In Complex With H-Trisaccharide
Length = 229
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 56/126 (44%), Gaps = 3/126 (2%)
Query: 134 QVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEI-GNLKDLDYLMLQGNKLD 192
Q+L L N +T P S NL +L L N L G++P+ + +L L L L N+L
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 193 GLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNP 252
L + L L L + NKL+ LPR + L L L LD N L L+
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160
Query: 253 LIEWYL 258
L YL
Sbjct: 161 LTHAYL 166
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 50/180 (27%), Positives = 70/180 (38%), Gaps = 31/180 (17%)
Query: 230 ELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEV-GNMKNLKILLLHRNNLT 288
++LYL N +T P L L E YL N L G LP V ++ L +L L N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 289 GPISSTIGYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKY 348
S+ L L+ L + N+L LPR + L +
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKLTE-------------------------LPRGIERLTH 136
Query: 349 LDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 408
L +LD N L IP G L+SL Y + E + L+N V H +++
Sbjct: 137 LTHLALDQNQL-KSIPH--GAFDRLSSLTHAY-LFGNPWDCECRDIMYLRNWVADHTSIA 192
Score = 30.0 bits (66), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 3/117 (2%)
Query: 354 LDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPS 413
L N + P L NL L LG NQL + + +QL L L N L+ + PS
Sbjct: 47 LHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPS 105
Query: 414 EIGN-LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469
+ + L HL++L + N + +P + + +++ + L +N L + + R+ L
Sbjct: 106 AVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSL 161
>pdb|3J0A|A Chain A, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
pdb|3J0A|B Chain B, Homology Model Of Human Toll-Like Receptor 5 Fitted Into
An Electron Microscopy Single Particle Reconstruction
Length = 844
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 87/341 (25%), Positives = 140/341 (41%), Gaps = 46/341 (13%)
Query: 133 LQVLNLSQN----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188
L++L++S N +TG + I S+ F L L+ +I+ N+KD D
Sbjct: 206 LEILDVSGNGWTVDITGNFSNAISKSQA-FSLILAHHIMGAGFGFH--NIKDPD-----Q 257
Query: 189 NKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLY 248
N GL SS+ +L G SLN R+ + +LK+L L Y N + Y
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLN---SRVFETLKDLKVLNLAY---NKINKIADEAFY 311
Query: 249 HLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSH 308
L+ L L+YN L + + + L +N++ T +L L+ LDL
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371
Query: 309 NRLD--GPIPSTIGXXXXXXXXXXXXXXXXGLLPR--EVGNLKYLDSRSLDGNNLIGPIP 364
N L IPS LP+ NL +L L+ +++ +
Sbjct: 372 NALTTIHFIPSIPDIFLSGNKLVT--------LPKINLTANLIHLSENRLENLDILYFLL 423
Query: 365 PTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGIFPSEIG---- 416
+ +L L L N+ SS P E N S L+ L L N L + +E+
Sbjct: 424 R----VPHLQILILNQNRFSSCSGDQTPSE--NPS-LEQLFLGENMLQLAWETELCWDVF 476
Query: 417 -NLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456
L+HL+ L L+HN++N P ++ + + L+ N L+
Sbjct: 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 30/109 (27%), Positives = 48/109 (44%), Gaps = 6/109 (5%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L +L LNL YN+++ LQ L LS+N L ++ S L + +DL N
Sbjct: 289 LKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKN 348
Query: 430 FINGTIPSQLGNIPNISAVDLSKNNLSGV--VPASVRRIPKLIVSENNL 476
I + + +DL N L+ + +P+ IP + +S N L
Sbjct: 349 HIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPS----IPDIFLSGNKL 393
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 60/134 (44%), Gaps = 22/134 (16%)
Query: 133 LQVLNLSQNHLTGT----IPSEIGSSRNLFQLDLSINILNGSIPLEIG-----NLKDLDY 183
LQ+L L+QN + PSE S LF L N+L + E+ L L
Sbjct: 428 LQILILNQNRFSSCSGDQTPSENPSLEQLF---LGENMLQLAWETELCWDVFEGLSHLQV 484
Query: 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS----GRLPREVGNLKILELLYLDSNNL 239
L L N L+ L P +LT L GL+L+ N+L+ LP NL+IL+ + N L
Sbjct: 485 LYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP---ANLEILD---ISRNQL 538
Query: 240 TGPIPSTLYHLNPL 253
P P L+ L
Sbjct: 539 LAPNPDVFVSLSVL 552
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 63/209 (30%), Positives = 82/209 (39%), Gaps = 37/209 (17%)
Query: 130 LSKLQVLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD-- 182
L KLQ L+L N H +IP S L L IN+ I L L++LD
Sbjct: 361 LEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP-KINLTANLIHLSENRLENLDIL 419
Query: 183 YLMLQGNKLDGLI------PSSIGNLT-----KLTGLNLSLNKLSGRLPREVG-----NL 226
Y +L+ L LI S G+ T L L L N L E+ L
Sbjct: 420 YFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL 479
Query: 227 KILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLV----GPLPKEVGNMKNLKILLL 282
L++LYL+ N L P HL L L N L LP NL+IL +
Sbjct: 480 SHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPA------NLEILDI 533
Query: 283 HRNNLTGPISSTIGYLNLLEILDLSHNRL 311
RN L P L+ +LD++HN+
Sbjct: 534 SRNQLLAPNPDVFVSLS---VLDITHNKF 559
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 28/100 (28%), Positives = 41/100 (41%)
Query: 117 GFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIG 176
GF+ L L+VLNL+ N + NL L+LS N+L
Sbjct: 276 GFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFY 335
Query: 177 NLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS 216
L + Y+ LQ N + + + L KL L+L N L+
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
>pdb|3KJ4|A Chain A, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
pdb|3KJ4|D Chain D, Structure Of Rat Nogo Receptor Bound To 1d9 Antagonist
Antibody
Length = 286
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 61/158 (38%), Gaps = 1/158 (0%)
Query: 273 NMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN-RLDGPIPSTIGXXXXXXXXXXX 331
+ +NL IL LH N L G ++ L LLE LDLS N +L P+T
Sbjct: 53 SCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLD 112
Query: 332 XXXXXGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPEL 391
L P L L L NNL T L NLT L L N++ S
Sbjct: 113 RCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAF 172
Query: 392 MNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L L+L N ++ + P +L L L L N
Sbjct: 173 RGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFAN 210
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 69/167 (41%), Gaps = 3/167 (1%)
Query: 123 IPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182
+P+ I A S Q + L N ++ + S RNL L L N L G L L+
Sbjct: 25 VPTGIPASS--QRIFLHGNRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLE 82
Query: 183 YLMLQGN-KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241
L L N +L + P++ L L L+L L P L L+ LYL NNL
Sbjct: 83 QLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQA 142
Query: 242 PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288
+T L L +L N + + +L LLLH+N++
Sbjct: 143 LPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVA 189
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 54/134 (40%), Gaps = 1/134 (0%)
Query: 179 KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN-KLSGRLPREVGNLKILELLYLDSN 237
++L L L N L G+ ++ LT L L+LS N +L P L L L+LD
Sbjct: 55 RNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTFRGLGHLHTLHLDRC 114
Query: 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGY 297
L P L L YL NNL ++ NL L LH N +
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTHLFLHGNRIPSVPEHAFRG 174
Query: 298 LNLLEILDLSHNRL 311
L+ L+ L L N +
Sbjct: 175 LHSLDRLLLHQNHV 188
Score = 32.7 bits (73), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 45/101 (44%), Gaps = 4/101 (3%)
Query: 381 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF-INGTIPSQL 439
N++S +C L L L N L+GI + LT L QLDLS N + P+
Sbjct: 41 NRISYVPAASFQSCRNLTILWLHSNALAGIDAAAFTGLTLLEQLDLSDNAQLRVVDPTTF 100
Query: 440 GNIPNISAVDLSKNNLSGVVPASVR---RIPKLIVSENNLE 477
+ ++ + L + L + P R + L + +NNL+
Sbjct: 101 RGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQ 141
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/117 (27%), Positives = 47/117 (40%)
Query: 124 PSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDY 183
P+ L L L+L + L P L L L N L +L +L +
Sbjct: 97 PTTFRGLGHLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNNLQALPDNTFRDLGNLTH 156
Query: 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240
L L GN++ + + L L L L N ++ P +L L LYL +NNL+
Sbjct: 157 LFLHGNRIPSVPEHAFRGLHSLDRLLLHQNHVARVHPHAFRDLGRLMTLYLFANNLS 213
>pdb|3V47|A Chain A, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
pdb|3V47|B Chain B, Crystal Structure Of The N-Tetminal Fragment Of Zebrafish
Tlr5 In Complex With Salmonella Flagellin
Length = 455
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 48/128 (37%), Gaps = 3/128 (2%)
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
E +K D L + + + + T+L L L N+++ + L L
Sbjct: 273 EASGVKTCD---LSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLN 329
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA 461
LS N L I NL L LDLS+N I +PN+ + L N L V
Sbjct: 330 LSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDG 389
Query: 462 SVRRIPKL 469
R+ L
Sbjct: 390 IFDRLTSL 397
Score = 32.3 bits (72), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 54/125 (43%)
Query: 161 DLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLP 220
DLS + + + + DL+ L L N+++ + ++ LT L LNLS N L
Sbjct: 281 DLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340
Query: 221 REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKIL 280
R NL LE+L L N++ + L L E L N L + +L+ +
Sbjct: 341 RMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKI 400
Query: 281 LLHRN 285
LH N
Sbjct: 401 WLHTN 405
>pdb|3M19|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
pdb|3M19|B Chain B, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R5.1
Length = 251
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 58/133 (43%), Gaps = 2/133 (1%)
Query: 180 DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNL 239
D + L LQ L L ++ LTKLT LNL N+L +L L L L +N L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 240 TGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNLTGPISSTIGYL 298
HL L + YL N L LP V + + LK L L+ N L + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 299 NLLEILDLSHNRL 311
L+ L LS N+L
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 55/129 (42%), Gaps = 24/129 (18%)
Query: 365 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS----GIF--------- 411
T LT LT LNL YNQL + + ++L L L++N L+ G+F
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 412 ----------PSEIGN-LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
PS + + LT L++L L+ N + + N+ + LS N L V
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 461 ASVRRIPKL 469
+ R+ KL
Sbjct: 173 GAFDRLGKL 181
Score = 32.7 bits (73), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 60/137 (43%), Gaps = 4/137 (2%)
Query: 178 LKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREV-GNLKILELLYLDS 236
L L +L L N+L L +LT+L L L+ N+L+ LP V +L L+ LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGG 116
Query: 237 NNLTGPIPSTLY-HLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTI 295
N L +PS ++ L L E L N L + NL+ L L N L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 296 GYLNLLEILDLSHNRLD 312
L L+ + L N+ D
Sbjct: 176 DRLGKLQTITLFGNQFD 192
>pdb|3M18|A Chain A, Crystal Structure Of Variable Lymphocyte Receptor
Vlra.R2.1 In Complex With Hen Egg Lysozyme
Length = 251
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 57/133 (42%), Gaps = 2/133 (1%)
Query: 180 DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNL 239
D + L LQ L L ++ LTKLT LNL N+L +L L L L +N L
Sbjct: 36 DTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL 95
Query: 240 TGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEV-GNMKNLKILLLHRNNLTGPISSTIGYL 298
HL L + YL N L LP V + LK L L+ N L + L
Sbjct: 96 ASLPLGVFDHLTQLDKLYLGGNQL-KSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKL 154
Query: 299 NLLEILDLSHNRL 311
L+ L LS N+L
Sbjct: 155 TNLQTLSLSTNQL 167
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 54/129 (41%), Gaps = 24/129 (18%)
Query: 365 PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS----GIF--------- 411
T LT LT LNL YNQL + + ++L L L++N L+ G+F
Sbjct: 53 ATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL 112
Query: 412 ----------PSEI-GNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
PS + LT L++L L+ N + + N+ + LS N L V
Sbjct: 113 YLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH 172
Query: 461 ASVRRIPKL 469
+ R+ KL
Sbjct: 173 GAFDRLGKL 181
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 4/144 (2%)
Query: 178 LKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREV-GNLKILELLYLDS 236
L L +L L N+L L +LT+L L L+ N+L+ LP V +L L+ LYL
Sbjct: 58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLAS-LPLGVFDHLTQLDKLYLGG 116
Query: 237 NNLTGPIPSTLY-HLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTI 295
N L +PS ++ L L E L N L + NL+ L L N L
Sbjct: 117 NQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAF 175
Query: 296 GYLNLLEILDLSHNRLDGPIPSTI 319
L L+ + L N+ D T+
Sbjct: 176 DRLGKLQTITLFGNQFDCSRCETL 199
>pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
pdb|3RFS|B Chain B, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 272
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 53/129 (41%), Gaps = 3/129 (2%)
Query: 341 REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 400
+E+ NL YL L GN L LTNL L L NQL S + L L
Sbjct: 82 KELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 401 VLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
L+HN L + LT+L +LDLS+N + + + + L +N L V
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPD 198
Query: 461 ASVRRIPKL 469
R+ L
Sbjct: 199 GVFDRLTSL 207
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 57/125 (45%), Gaps = 5/125 (4%)
Query: 345 NLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404
N++YL +L GN L + LTNLT L L NQL S + L+ LVL
Sbjct: 64 NVRYL---ALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVR 464
N L + LT+L L+L+HN + + N++ +DLS N L +
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFD 178
Query: 465 RIPKL 469
++ +L
Sbjct: 179 KLTQL 183
Score = 37.0 bits (84), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 67/145 (46%), Gaps = 6/145 (4%)
Query: 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYL 234
+ L +L YL+L GN+L L LT L L L N+L LP V + K+ L YL
Sbjct: 81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQS-LPDGVFD-KLTNLTYL 138
Query: 235 D-SNNLTGPIPSTLY-HLNPLIEWYLAYNNLVGPLPKEV-GNMKNLKILLLHRNNLTGPI 291
+ ++N +P ++ L L E L+YN L LP+ V + LK L L++N L
Sbjct: 139 NLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQS-LPEGVFDKLTQLKDLRLYQNQLKSVP 197
Query: 292 SSTIGYLNLLEILDLSHNRLDGPIP 316
L L+ + L N D P
Sbjct: 198 DGVFDRLTSLQYIWLHDNPWDCTCP 222
Score = 35.4 bits (80), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 33/67 (49%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
LTNLT L+L YNQL S +QL++L L N L + LT L+ + L N
Sbjct: 156 LTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215
Query: 430 FINGTIP 436
+ T P
Sbjct: 216 PWDCTCP 222
>pdb|2FT3|A Chain A, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|B Chain B, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|C Chain C, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|D Chain D, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|E Chain E, Crystal Structure Of The Biglycan Dimer Core Protein
pdb|2FT3|F Chain F, Crystal Structure Of The Biglycan Dimer Core Protein
Length = 332
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/124 (33%), Positives = 64/124 (51%), Gaps = 11/124 (8%)
Query: 120 SGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNL- 178
SG P L KL L +S+ LTG IP ++ + N LD N +E+ +L
Sbjct: 162 SGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDH-----NKIQAIELEDLL 214
Query: 179 --KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236
L L L N++ + S+ L L L+L NKLS R+P + +LK+L+++YL +
Sbjct: 215 RYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHT 273
Query: 237 NNLT 240
NN+T
Sbjct: 274 NNIT 277
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 63/255 (24%), Positives = 108/255 (42%), Gaps = 41/255 (16%)
Query: 66 HCKWMGITCNSAGSIV---EISS----YEMDNNGNAAELSQFNFTCFPNLITFKISGTGF 118
HC + C+ G EIS ++ NN + +EL + +F +L +
Sbjct: 32 HCHLRVVQCSDLGLKAVPKEISPDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK- 89
Query: 119 LSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNL 178
+S L KLQ L +S+NHL IP + SS L +L + N + L
Sbjct: 90 ISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLPSS--LVELRIHDNRIRKVPKGVFSGL 146
Query: 179 KDLDYLMLQGNKLD--GLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236
++++ + + GN L+ G P + L KL L +S KL+G +P+++ + L L+LD
Sbjct: 147 RNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDH 202
Query: 237 NNLTGPIPSTLYHLNPLIEWYLAYN-----------------------NLVGPLPKEVGN 273
N + L + L L +N N + +P + +
Sbjct: 203 NKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAGLPD 262
Query: 274 MKNLKILLLHRNNLT 288
+K L+++ LH NN+T
Sbjct: 263 LKLLQVVYLHTNNIT 277
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 373 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432
L L+L +N++ + +L+ S+L L L HN + I + L LR+L L +N ++
Sbjct: 195 LNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS 254
Query: 433 GTIPSQLGNIPNISAVDLSKNNLSGV 458
+P+ L ++ + V L NN++ V
Sbjct: 255 -RVPAGLPDLKLLQVVYLHTNNITKV 279
>pdb|3ZYN|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
pdb|3ZYN|B Chain B, Crystal Structure Of The N-Terminal Leucine Rich Repeats
Of Netrin-G Ligand-3
Length = 321
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
E+ L+Y+ + +G L NL LNLG L P L +L+ L
Sbjct: 140 ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLKDI--PNLTALVRLEELE 184
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
LS N L I P LT LR+L L H + + ++ ++ ++LS NNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|1OZN|A Chain A, 1.5a Crystal Structure Of The Nogo Receptor Ligand Binding
Domain Reveals A Convergent Recognition Scaffold
Mediating Inhibition Of Myelination
Length = 285
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 57/147 (38%)
Query: 95 AELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSS 154
A + FT L +S L P+ L +L L+L + L P
Sbjct: 69 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 128
Query: 155 RNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNK 214
L L L N L +L +L +L L GN++ + + L L L L N+
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188
Query: 215 LSGRLPREVGNLKILELLYLDSNNLTG 241
++ P +L L LYL +NNL+
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLSA 215
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 3/167 (1%)
Query: 123 IPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182
+P I A S Q + L N ++ + + RNL L L N+L L L+
Sbjct: 26 VPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83
Query: 183 YLMLQGN-KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241
L L N +L + P++ L +L L+L L P L L+ LYL N L
Sbjct: 84 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143
Query: 242 PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288
T L L +L N + + + +L LLLH+N +
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 190
Score = 36.6 bits (83), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 49/160 (30%), Positives = 63/160 (39%), Gaps = 7/160 (4%)
Query: 274 MKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN-RLDGPIPSTIGXXXXXXXXXXXX 332
+NL IL LH N L ++ L LLE LDLS N +L P+T
Sbjct: 55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDR 114
Query: 333 XXXXGLLP---REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPP 389
L P R + L+YL L N L T L NLT L L N++SS
Sbjct: 115 CGLQELGPGLFRGLAALQYL---YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER 171
Query: 390 ELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L L+L N ++ + P +L L L L N
Sbjct: 172 AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 53/134 (39%), Gaps = 1/134 (0%)
Query: 179 KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN-KLSGRLPREVGNLKILELLYLDSN 237
++L L L N L + ++ L L L+LS N +L P L L L+LD
Sbjct: 56 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 115
Query: 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGY 297
L P L L YL N L ++ NL L LH N ++
Sbjct: 116 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 175
Query: 298 LNLLEILDLSHNRL 311
L+ L+ L L NR+
Sbjct: 176 LHSLDRLLLHQNRV 189
>pdb|3ZYO|A Chain A, Crystal Structure Of The N-Terminal Leucine Rich Repeats
And Immunoglobulin Domain Of Netrin-G Ligand-3
Length = 411
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 50/114 (43%), Gaps = 15/114 (13%)
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
E+ L+Y+ + +G L NL LNLG L P L +L+ L
Sbjct: 140 ELKRLEYISEAAFEG-------------LVNLRYLNLGMCNLKDI--PNLTALVRLEELE 184
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
LS N L I P LT LR+L L H + + ++ ++ ++LS NNL
Sbjct: 185 LSGNRLDLIRPGSFQGLTSLRKLWLMHAQVATIERNAFDDLKSLEELNLSHNNL 238
>pdb|3CIG|A Chain A, Crystal Structure Of Mouse Tlr3 Ectodomain
pdb|3CIY|A Chain A, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
pdb|3CIY|B Chain B, Mouse Toll-Like Receptor 3 Ectodomain Complexed With
Double-Stranded Rna
Length = 697
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 35/104 (33%), Positives = 50/104 (48%), Gaps = 3/104 (2%)
Query: 357 NNLIGPIPPT-IGYLTNLTSLNLGYNQLSSSIPPELMNC-SQLQNLVLSHNTLSGIFPSE 414
+N + +PPT + L L+ G+N +S + PEL L+ L L HN LS I
Sbjct: 34 HNQLRRLPPTNFTRYSQLAILDAGFNSISK-LEPELCQILPLLKVLNLQHNELSQISDQT 92
Query: 415 IGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
T+L +LDL N I+ + N N+ +DLS N LS
Sbjct: 93 FVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLSST 136
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
+N+T LNL +NQL P SQL L N++S + P L L+ L+L HN
Sbjct: 25 SNITVLNLTHNQLRRLPPTNFTRYSQLAILDAGFNSISKLEPELCQILPLLKVLNLQHNE 84
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
++ N++ +DL N++ +
Sbjct: 85 LSQISDQTFVFCTNLTELDLMSNSIHKI 112
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 86/345 (24%), Positives = 129/345 (37%), Gaps = 64/345 (18%)
Query: 131 SKLQVLNLSQNHLTGTIPSEIGSSR--NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188
+ +Q L+L+ N L T S + NL QLDLS N L+ L L YL L+
Sbjct: 222 TSIQNLSLANNQLLATSESTFSGLKWTNLTQLDLSYNNLHDVGNGSFSYLPSLRYLSLEY 281
Query: 189 NKLDGLIPSSIGNLTKLTGLNL--SLNKLSGRLPRE-------VGNLKILELLYLDSNNL 239
N + L P S L+ L L+L + K S L LK LE L +D NN+
Sbjct: 282 NNIQRLSPRSFYGLSNLRYLSLKRAFTKQSVSLASHPNIDDFSFQWLKYLEYLNMDDNNI 341
Query: 240 TGPIPSTLYHLNPLIEWYLA--YNNLVGPLPKEVGNMKNLKILLLH--RNNLTGPISSTI 295
+T L L L+ + +L + ++ + +L L+ +N+++ + T
Sbjct: 342 PSTKSNTFTGLVSLKYLSLSKTFTSLQTLTNETFVSLAHSPLLTLNLTKNHISKIANGTF 401
Query: 296 GYLNLLEILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLD 355
+L L ILDL N ++ + L
Sbjct: 402 SWLGQLRILDLGLNEIE---------------------------------------QKLS 422
Query: 356 GNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS--GIFPS 413
G G L N+ + L YN+ LQ L+L L I PS
Sbjct: 423 GQEWRG--------LRNIFEIYLSYNKYLQLSTSSFALVPSLQRLMLRRVALKNVDISPS 474
Query: 414 EIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458
L +L LDLS+N I L + N+ +D NNL+ +
Sbjct: 475 PFRPLRNLTILDLSNNNIANINEDLLEGLENLEILDFQHNNLARL 519
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 87/222 (39%), Gaps = 39/222 (17%)
Query: 277 LKILLLHRNNLTGPISSTIGYL-NLLEI-----------------------LDLSHNRLD 312
LK+L L N L+ T + NL E+ LDLSHN L
Sbjct: 75 LKVLNLQHNELSQISDQTFVFCTNLTELDLMSNSIHKIKSNPFKNQKNLIKLDLSHNGLS 134
Query: 313 GPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDS---RSLD-GNNLIGPIPP--- 365
+ +G +L L++L + R LD +N + P
Sbjct: 135 S---TKLGTGVQLENLQELLLAKNKILALRSEELEFLGNSSLRKLDLSSNPLKEFSPGCF 191
Query: 366 -TIGYLTNLTSLNLGYN-QLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNL--THL 421
TIG L L N N L+ + EL N S +QNL L++N L S L T+L
Sbjct: 192 QTIGKLFALLLNNAQLNPHLTEKLCWELSNTS-IQNLSLANNQLLATSESTFSGLKWTNL 250
Query: 422 RQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463
QLDLS+N ++ +P++ + L NN+ + P S
Sbjct: 251 TQLDLSYNNLHDVGNGSFSYLPSLRYLSLEYNNIQRLSPRSF 292
>pdb|3ULU|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form1)
pdb|3ULV|A Chain A, Structure Of Quaternary Complex Of Human Tlr3ecd With
Three Fabs (Form2)
Length = 694
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 35 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 94
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
++ N++ + L N++ +
Sbjct: 95 LSQLSDKTFAFCTNLTELHLMSNSIQKI 122
Score = 36.2 bits (82), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 133/336 (39%), Gaps = 33/336 (9%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL--SLN 213
NL LDLS N LN L L+Y L+ N + L S+ L + LNL S
Sbjct: 259 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 318
Query: 214 KLS---GRLPR----EVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEW-YLAYNNLVG 265
K S LP+ LK LE L ++ N++ G I S ++ LI YL+ +N
Sbjct: 319 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF--TGLINLKYLSLSNSFT 375
Query: 266 PLPKEVGNM------KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTI 319
L L IL L +N ++ S +L LE+LDL N + +
Sbjct: 376 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 435
Query: 320 GXXXXXXXXXXXXXXXXGLLPRE----VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTS 375
L R V +L+ L R + N + P L NLT
Sbjct: 436 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTI 494
Query: 376 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSE--------IGNLTHLRQLDLS 427
L+L N +++ L +L+ L L HN L+ ++ + L+HL L+L
Sbjct: 495 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 554
Query: 428 HNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463
N + ++ + +DL NNL +PASV
Sbjct: 555 SNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 589
Score = 35.0 bits (79), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
+ LTSL++G+N +S P L+ L L HN LS + T+L +L L N
Sbjct: 59 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 118
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
I + N+ +DLS N LS
Sbjct: 119 IQKIKNNPFVKQKNLITLDLSHNGLSST 146
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 347 KYLDSRSLD-GNNLIGPIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 57 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 116
Query: 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGT 434
N++ I + +L LDLSHN ++ T
Sbjct: 117 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 146
>pdb|1P8T|A Chain A, Crystal Structure Of Nogo-66 Receptor
Length = 285
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 38/147 (25%), Positives = 57/147 (38%)
Query: 95 AELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSS 154
A + FT L +S L P+ L +L L+L + L P
Sbjct: 68 ARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL 127
Query: 155 RNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNK 214
L L L N L +L +L +L L GN++ + + L L L L N+
Sbjct: 128 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 187
Query: 215 LSGRLPREVGNLKILELLYLDSNNLTG 241
++ P +L L LYL +NNL+
Sbjct: 188 VAHVHPHAFRDLGRLMTLYLFANNLSA 214
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 63/159 (39%), Gaps = 7/159 (4%)
Query: 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN-RLDGPIPSTIGXXXXXXXXXXXXX 333
+NL IL LH N L ++ L LLE LDLS N +L P+T
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 334 XXXGLLP---REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPE 390
L P R + L+YL L N L T L NLT L L N++SS
Sbjct: 115 GLQELGPGLFRGLAALQYL---YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 171
Query: 391 LMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
L L+L N ++ + P +L L L L N
Sbjct: 172 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 210
Score = 36.6 bits (83), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 45/167 (26%), Positives = 67/167 (40%), Gaps = 3/167 (1%)
Query: 123 IPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182
+P I A S Q + L N ++ + + RNL L L N+L L L+
Sbjct: 25 VPVGIPAAS--QRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 82
Query: 183 YLMLQGN-KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241
L L N +L + P++ L +L L+L L P L L+ LYL N L
Sbjct: 83 QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 142
Query: 242 PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288
T L L +L N + + + +L LLLH+N +
Sbjct: 143 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA 189
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 54/142 (38%), Gaps = 1/142 (0%)
Query: 179 KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN-KLSGRLPREVGNLKILELLYLDSN 237
++L L L N L + ++ L L L+LS N +L P L L L+LD
Sbjct: 55 RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRC 114
Query: 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGY 297
L P L L YL N L ++ NL L LH N ++
Sbjct: 115 GLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRG 174
Query: 298 LNLLEILDLSHNRLDGPIPSTI 319
L+ L+ L L NR+ P
Sbjct: 175 LHSLDRLLLHQNRVAHVHPHAF 196
>pdb|2A0Z|A Chain A, The Molecular Structure Of Toll-like Receptor 3 Ligand
Binding Domain
Length = 705
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 30 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 89
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
++ N++ + L N++ +
Sbjct: 90 LSQLSDKTFAFCTNLTELHLMSNSIQKI 117
Score = 36.2 bits (82), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 133/336 (39%), Gaps = 33/336 (9%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL--SLN 213
NL LDLS N LN L L+Y L+ N + L S+ L + LNL S
Sbjct: 254 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 313
Query: 214 KLS---GRLPR----EVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEW-YLAYNNLVG 265
K S LP+ LK LE L ++ N++ G I S ++ LI YL+ +N
Sbjct: 314 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF--TGLINLKYLSLSNSFT 370
Query: 266 PLPKEVGNM------KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTI 319
L L IL L +N ++ S +L LE+LDL N + +
Sbjct: 371 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 430
Query: 320 GXXXXXXXXXXXXXXXXGLLPRE----VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTS 375
L R V +L+ L R + N + P L NLT
Sbjct: 431 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTI 489
Query: 376 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSE--------IGNLTHLRQLDLS 427
L+L N +++ L +L+ L L HN L+ ++ + L+HL L+L
Sbjct: 490 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 549
Query: 428 HNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463
N + ++ + +DL NNL +PASV
Sbjct: 550 SNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 584
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
+ LTSL++G+N +S P L+ L L HN LS + T+L +L L N
Sbjct: 54 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 113
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
I + N+ +DLS N LS
Sbjct: 114 IQKIKNNPFVKQKNLITLDLSHNGLSST 141
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 347 KYLDSRSLD-GNNLIGPIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 52 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 111
Query: 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGT 434
N++ I + +L LDLSHN ++ T
Sbjct: 112 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 141
>pdb|1ZIW|A Chain A, Human Toll-Like Receptor 3 Extracellular Domain Structure
Length = 680
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 42/88 (47%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
TN+T LNL +NQL SQL +L + NT+S + P L L+ L+L HN
Sbjct: 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
++ N++ + L N++ +
Sbjct: 85 LSQLSDKTFAFCTNLTELHLMSNSIQKI 112
Score = 35.8 bits (81), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 90/336 (26%), Positives = 133/336 (39%), Gaps = 33/336 (9%)
Query: 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL--SLN 213
NL LDLS N LN L L+Y L+ N + L S+ L + LNL S
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308
Query: 214 KLS---GRLPR----EVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEW-YLAYNNLVG 265
K S LP+ LK LE L ++ N++ G I S ++ LI YL+ +N
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPG-IKSNMF--TGLINLKYLSLSNSFT 365
Query: 266 PLPKEVGNM------KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTI 319
L L IL L +N ++ S +L LE+LDL N + +
Sbjct: 366 SLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQE 425
Query: 320 GXXXXXXXXXXXXXXXXGLLPRE----VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTS 375
L R V +L+ L R + N + P L NLT
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKN-VDSSPSPFQPLRNLTI 484
Query: 376 LNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSE--------IGNLTHLRQLDLS 427
L+L N +++ L +L+ L L HN L+ ++ + L+HL L+L
Sbjct: 485 LDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLE 544
Query: 428 HNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463
N + ++ + +DL NNL +PASV
Sbjct: 545 SNGFDEIPVEVFKDLFELKIIDLGLNNL-NTLPASV 579
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 40/88 (45%)
Query: 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNF 430
+ LTSL++G+N +S P L+ L L HN LS + T+L +L L N
Sbjct: 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108
Query: 431 INGTIPSQLGNIPNISAVDLSKNNLSGV 458
I + N+ +DLS N LS
Sbjct: 109 IQKIKNNPFVKQKNLITLDLSHNGLSST 136
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 42/90 (46%), Gaps = 2/90 (2%)
Query: 347 KYLDSRSLD-GNNLIGPIPPTIGY-LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404
+Y SLD G N I + P + L L LNL +N+LS C+ L L L
Sbjct: 47 RYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMS 106
Query: 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGT 434
N++ I + +L LDLSHN ++ T
Sbjct: 107 NSIQKIKNNPFVKQKNLITLDLSHNGLSST 136
>pdb|2Z7X|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 520
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 148 PSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGL--IPSSIGNLTKL 205
PS+I LD S N+L ++ G+L +L+ L+LQ N+L L I + L
Sbjct: 320 PSKISP---FLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSL 376
Query: 206 TGLNLSLNKLSGRLPR-EVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLV 264
L++S N +S + + K L L + SN LT I L P I+ ++N +
Sbjct: 377 QQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTI---FRCLPPRIKVLDLHSNKI 433
Query: 265 GPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316
+PK+V ++ L+ L + N L L L+ + L N D P
Sbjct: 434 KSIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 485
Score = 35.8 bits (81), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 38/116 (32%), Positives = 55/116 (47%), Gaps = 4/116 (3%)
Query: 118 FLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGN 177
++S S+I +LSKL++L +S N + S ++ L LDLS N L N
Sbjct: 32 YISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVN 91
Query: 178 LKDLDYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELL 232
LK LD L N D L I GN+++L L LS L + +L I ++L
Sbjct: 92 LKHLD---LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVL 144
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 64/135 (47%), Gaps = 14/135 (10%)
Query: 122 RIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLK-- 179
+P ++ K +LN+SQN+++ S+I S L L +S N + L+I K
Sbjct: 14 HVPKDLSQ--KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY---LDISVFKFN 68
Query: 180 -DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLP--REVGNLKILELLYLDS 236
+L+YL L NK L+ S L L+LS N LP +E GN+ L+ L L +
Sbjct: 69 QELEYLDLSHNK---LVKISCHPTVNLKHLDLSFNAFDA-LPICKEFGNMSQLKFLGLST 124
Query: 237 NNLTGPIPSTLYHLN 251
+L + HLN
Sbjct: 125 THLEKSSVLPIAHLN 139
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 29/149 (19%)
Query: 347 KYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT 406
++L RS +G + +P + T T LN+ N +S ++++ S+L+ L++SHN
Sbjct: 2 EFLVDRSKNG---LIHVPKDLSQKT--TILNISQNYISELWTSDILSLSKLRILIISHNR 56
Query: 407 LSGI------FPSEIG--NLTH-------------LRQLDLSHNFINGT-IPSQLGNIPN 444
+ + F E+ +L+H L+ LDLS N + I + GN+
Sbjct: 57 IQYLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQ 116
Query: 445 ISAVDLSKNNL--SGVVPASVRRIPKLIV 471
+ + LS +L S V+P + I K+++
Sbjct: 117 LKFLGLSTTHLEKSSVLPIAHLNISKVLL 145
Score = 30.0 bits (66), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 55/124 (44%), Gaps = 24/124 (19%)
Query: 204 KLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWY-LAYNN 262
K T LN+S N +S ++ +L L +L + S+N + +++ N +E+ L++N
Sbjct: 22 KTTILNISQNYISELWTSDILSLSKLRILII-SHNRIQYLDISVFKFNQELEYLDLSHNK 80
Query: 263 LVG----------------------PLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNL 300
LV P+ KE GNM LK L L +L I +LN+
Sbjct: 81 LVKISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNI 140
Query: 301 LEIL 304
++L
Sbjct: 141 SKVL 144
>pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte
Receptors Of Jawless Vertebrates By Module Engineering
Length = 279
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 51/129 (39%), Gaps = 3/129 (2%)
Query: 341 REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNL 400
+E+ NL YL L GN L LTNL L L NQL S + L L
Sbjct: 82 KELTNLTYL---ILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL 138
Query: 401 VLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
L HN L + LT+L +LDL +N + + + + L+ N L V
Sbjct: 139 YLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFDKLTQLKQLSLNDNQLKSVPD 198
Query: 461 ASVRRIPKL 469
R+ L
Sbjct: 199 GVFDRLTSL 207
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 345 NLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404
N++YL +L GN L + LTNLT L L NQL S + L+ LVL
Sbjct: 64 NVRYL---ALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVE 118
Query: 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV---VPA 461
N L + LT+L L L HN + + N++ +DL N L + V
Sbjct: 119 NQLQSLPDGVFDKLTNLTYLYLYHNQLQSLPKGVFDKLTNLTRLDLDNNQLQSLPEGVFD 178
Query: 462 SVRRIPKLIVSENNLE 477
+ ++ +L +++N L+
Sbjct: 179 KLTQLKQLSLNDNQLK 194
>pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|B Chain B, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|C Chain C, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
pdb|2Z66|D Chain D, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And
Hagfish Vlrb.61
Length = 306
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 76/315 (24%), Positives = 115/315 (36%), Gaps = 59/315 (18%)
Query: 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLD-SNNLTGP 242
L L+ NKL L LT+LT L+LS N LS + + L YLD S N
Sbjct: 33 LELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 243 IPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLE 302
+ S L L ++NL M + L RN L
Sbjct: 93 MSSNFLGLEQLEHLDFQHSNL--------KQMSEFSVFLSLRN---------------LI 129
Query: 303 ILDLSHNRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGNNLIGP 362
LD+SH G+ L L+ + GN+
Sbjct: 130 YLDISHTH--------------------TRVAFNGIF----NGLSSLEVLKMAGNSFQEN 165
Query: 363 IPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI--FPSEIGNLT 419
P I L NLT L+L QL P + S LQ L +SHN + FP + L
Sbjct: 166 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC--LN 223
Query: 420 HLRQLDLSHNFINGTIPSQLGNIP-NISAVDLSKNNLSGVVPAS-----VRRIPKLIVSE 473
L+ LD S N I + +L + P +++ ++L++N+ + ++ +L+V
Sbjct: 224 SLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEV 283
Query: 474 NNLELENSTSSENAP 488
+E + + P
Sbjct: 284 ERMECATPSDKQGMP 298
>pdb|3GBW|A Chain A, Crystal Structure Of The First Phr Domain Of The Mouse
Myc- Binding Protein 2 (Mycbp-2)
Length = 164
Score = 35.4 bits (80), Expect = 0.085, Method: Composition-based stats.
Identities = 23/74 (31%), Positives = 33/74 (44%), Gaps = 7/74 (9%)
Query: 33 ASDASSAIQLEREALLNSGWWNSSWATANYTSDHCKWMG---ITCNSAGSIVEISSYEMD 89
A+ A + LL +GWW +WA + S C G IT + G I + S +
Sbjct: 84 AAREKYAXXFDEPVLLQAGWWYVAWARVSGPSSDCGSHGQASITTDD-GVIFQFKSSKKS 142
Query: 90 NNG---NAAELSQF 100
NNG NA ++ Q
Sbjct: 143 NNGTDVNAGQIPQL 156
>pdb|4FHO|A Chain A, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
pdb|4FHO|B Chain B, Crystal Structure Of An Internalin C2 (Inlc2) From
Listeria Monocytogenes Str. 4b F2365 At 1.90 A
Resolution
Length = 231
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426
I YL NL L L NQ++ P L N +++ L LS N L + S I L ++ LDL
Sbjct: 65 IQYLNNLIGLELKDNQITDLTP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 120
Query: 427 SHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
+ I P L + N+ + L N ++ + P
Sbjct: 121 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 152
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 47/96 (48%), Gaps = 6/96 (6%)
Query: 125 SEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184
S I L ++ L+L+ +T P + NL L L +N + PL L +L YL
Sbjct: 107 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYL 162
Query: 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLP 220
+ N+++ L P + NL+KLT L NK+S P
Sbjct: 163 SIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP 196
Score = 31.6 bits (70), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 34/94 (36%), Positives = 49/94 (52%), Gaps = 7/94 (7%)
Query: 358 NLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN 417
N I I P G LTNL L++G NQ++ P L N S+L L N +S I P + +
Sbjct: 145 NQITNISPLAG-LTNLQYLSIGNNQVNDLTP--LANLSKLTTLRADDNKISDISP--LAS 199
Query: 418 LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLS 451
L +L ++ L N I+ P L N+ N+ V L+
Sbjct: 200 LPNLIEVHLKDNQISDVSP--LANLSNLFIVTLT 231
>pdb|3T6Q|A Chain A, Crystal Structure Of Mouse Rp105MD-1 Complex
pdb|3T6Q|B Chain B, Crystal Structure Of Mouse Rp105MD-1 Complex
Length = 606
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 28/131 (21%)
Query: 366 TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI-------FPS----- 413
T + L L+L LS +P L+ S L+ LVLS N + FPS
Sbjct: 273 TFHCFSGLQELDLTATHLSE-LPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 414 --------EIG-----NLTHLRQLDLSHNFINGTIPS--QLGNIPNISAVDLSKNNLSGV 458
E+G NL +LR+LDLSH+ I + QL N+ ++ +++LS N +
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 459 VPASVRRIPKL 469
+ + P+L
Sbjct: 392 KTEAFKECPQL 402
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 66/248 (26%), Positives = 102/248 (41%), Gaps = 47/248 (18%)
Query: 102 FTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHL-------TGTIPS----- 149
F CF L ++ T +PS + LS L+ L LS N PS
Sbjct: 274 FHCFSGLQELDLTATHL--SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLS 331
Query: 150 --------EIGSS-----RNLFQLDLSINILNGS--IPLEIGNLKDLDYLMLQGNKLDGL 194
E+G+ NL +LDLS + + S L++ NL L L L N+ L
Sbjct: 332 IKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSL 391
Query: 195 IPSSIGNLTKLTGLNLSLNKLSGRLPRE-VGNLKILE-------LLYLDSNNLTGPIPST 246
+ +L L+L+ +L + + NL +L+ LL + S L +P+
Sbjct: 392 KTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPA- 450
Query: 247 LYHLNPLIEWYLAYNNL-VGPLPK--EVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEI 303
L HLN L N+ G + K + + L+IL+L +L+ L ++
Sbjct: 451 LQHLN------LQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 304 LDLSHNRL 311
+DLSHNRL
Sbjct: 505 VDLSHNRL 512
Score = 29.3 bits (64), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS-GIFPSEIGNLTHLRQLDLSH 428
L++L SLNL YN+ S C QL+ L L+ L S NL L+ L+LSH
Sbjct: 375 LSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSH 434
Query: 429 NFINGTIPSQLGNIPNISAVDLSKNNL 455
+ ++ + +P + ++L N+
Sbjct: 435 SLLDISSEQLFDGLPALQHLNLQGNHF 461
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 52/116 (44%), Gaps = 3/116 (2%)
Query: 102 FTCFPNLITFKISGTGFLSGRIPS--EIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQ 159
F P L + G F G I + L +L++L LS L+ S + +
Sbjct: 445 FDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNH 504
Query: 160 LDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKL 215
+DLS N L S + +LK + YL L N + ++PS + L++ +NL N L
Sbjct: 505 VDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
Score = 28.9 bits (63), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 37/66 (56%), Gaps = 1/66 (1%)
Query: 396 QLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
+L+ LVLS LS I +L + +DLSHN + + L ++ I ++L+ N++
Sbjct: 477 RLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHI 535
Query: 456 SGVVPA 461
S ++P+
Sbjct: 536 SIILPS 541
>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
pdb|2Z80|B Chain B, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 353
Score = 34.3 bits (77), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 368 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427
G + SL+L N+++ +L C LQ LVL+ N ++ I +L L LDLS
Sbjct: 49 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108
Query: 428 HNFIN 432
+N+++
Sbjct: 109 YNYLS 113
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 68/251 (27%), Positives = 104/251 (41%), Gaps = 22/251 (8%)
Query: 66 HCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPS 125
H WM G I+ +S E N Q + +C N I SG+ IPS
Sbjct: 3 HTLWMVWV---LGVIISLSKEESSN--------QASLSCDRNGICKGSSGS---LNSIPS 48
Query: 126 EIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185
G ++ L+LS N +T S++ NL L L+ N +N +L L++L
Sbjct: 49 --GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106
Query: 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLN--KLSGR--LPREVGNLKILELLYLDSNNLTG 241
L N L L S L+ LT LNL N K G L + L+IL + +D+ T
Sbjct: 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT--FTK 164
Query: 242 PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLL 301
L L E + ++L PK + +++N+ L+LH + + + +
Sbjct: 165 IQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSV 224
Query: 302 EILDLSHNRLD 312
E L+L LD
Sbjct: 225 ECLELRDTDLD 235
>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 35/65 (53%)
Query: 368 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427
G + SL+L N+++ +L C LQ LVL+ N ++ I +L L LDLS
Sbjct: 23 GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 82
Query: 428 HNFIN 432
+N+++
Sbjct: 83 YNYLS 87
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 54/194 (27%), Positives = 85/194 (43%), Gaps = 8/194 (4%)
Query: 123 IPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182
IPS G ++ L+LS N +T S++ NL L L+ N +N +L L+
Sbjct: 20 IPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLE 77
Query: 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN--KLSGR--LPREVGNLKILELLYLDSNN 238
+L L N L L S L+ LT LNL N K G L + L+IL + +D+
Sbjct: 78 HLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDT-- 135
Query: 239 LTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYL 298
T L L E + ++L PK + +++N+ L+LH + +
Sbjct: 136 FTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVT 195
Query: 299 NLLEILDLSHNRLD 312
+ +E L+L LD
Sbjct: 196 SSVECLELRDTDLD 209
>pdb|2O6S|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
pdb|2O6S|B Chain B, Structural Diversity Of The Hagfish Variable Lymphocyte
Receptors B59
Length = 208
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 46/129 (35%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 160 LDLSINILNGSIPLEIGN-LKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGR 218
LDL N L S+P + + L L L L GNKL L LT LT LNLS N+L
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS- 90
Query: 219 LPREV-GNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGN-MKN 276
LP V L L+ L L++N L L L + L Y N + +P V + + +
Sbjct: 91 LPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRL-YQNQLKSVPDGVFDRLTS 149
Query: 277 LKILLLHRN 285
L+ + LH N
Sbjct: 150 LQYIWLHDN 158
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 8/75 (10%)
Query: 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429
LT+LT LNL NQL S +QL+ L L+ N L + LT L+ L L N
Sbjct: 75 LTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQN 134
Query: 430 FINGTIPSQLGNIPN 444
QL ++P+
Sbjct: 135 --------QLKSVPD 141
>pdb|1H6U|A Chain A, Internalin H: Crystal Structure Of Fused N-Terminal
Domains
Length = 308
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 6/94 (6%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426
+ YL NL L L NQ++ P L N +++ L LS N L + S I L ++ LDL
Sbjct: 59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDL 114
Query: 427 SHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460
+ I P L + N+ + L N ++ + P
Sbjct: 115 TSTQITDVTP--LAGLSNLQVLYLDLNQITNISP 146
Score = 32.0 bits (71), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 6/96 (6%)
Query: 125 SEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184
S I L ++ L+L+ +T P + NL L L +N + PL L +L YL
Sbjct: 101 SAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISPL--AGLTNLQYL 156
Query: 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLP 220
+ ++ L P + NL+KLT L NK+S P
Sbjct: 157 SIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP 190
>pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit
Length = 192
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 40/87 (45%)
Query: 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYL 234
G L L L L+ N+L G+ P++ + + L L NK+ + L L+ L L
Sbjct: 50 FGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109
Query: 235 DSNNLTGPIPSTLYHLNPLIEWYLAYN 261
N ++ +P + HLN L LA N
Sbjct: 110 YDNQISCVMPGSFEHLNSLTSLNLASN 136
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 32/71 (45%)
Query: 396 QLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
L L L N L+GI P+ +H+++L L N I + + ++L N +
Sbjct: 55 HLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114
Query: 456 SGVVPASVRRI 466
S V+P S +
Sbjct: 115 SCVMPGSFEHL 125
>pdb|2V9T|B Chain B, Complex Between The Second Lrr Domain Of Slit2 And The
First Ig Domain From Robo1
Length = 220
Score = 33.5 bits (75), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 6/162 (3%)
Query: 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDL 162
TC N++ + G + +P I + L QN + P + L ++DL
Sbjct: 10 TCSNNIVDCRGKGLTEIPTNLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDL 63
Query: 163 SINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPRE 222
S N ++ P L+ L+ L+L GNK+ L S L L L L+ NK++
Sbjct: 64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDA 123
Query: 223 VGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLV 264
+L L LL L N L T L + +LA N +
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 66/250 (26%), Positives = 104/250 (41%), Gaps = 33/250 (13%)
Query: 95 AELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHL-------TGTI 147
++LS F CF + ++ L+G +PS I ++ L+ L L+ N +
Sbjct: 266 SDLSSSTFRCFTRVQELDLTA-AHLNG-LPSGIEGMNSLKKLVLNANSFDQLCQINAASF 323
Query: 148 PS-------------EIGSS-----RNLFQLDLSINILNGS--IPLEIGNLKDLDYLMLQ 187
PS ++G+ NL +LDLS + + S L++ NL+ L YL L
Sbjct: 324 PSLRDLYIKGNMRKLDLGTRCLEKLENLQKLDLSHSDIEASDCCNLQLKNLRHLQYLNLS 383
Query: 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPRE-VGNLKILELLYLDSNNLTGPIPST 246
N+ GL + +L L+++ L + P NL +L +L L L
Sbjct: 384 YNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHL 443
Query: 247 LYHLNPLIEWYLAYNNLV-GPLPKE--VGNMKNLKILLLHRNNLTGPISSTIGYLNLLEI 303
L L L L N+ G + K + + +L+IL+L NL L +
Sbjct: 444 LAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRNVNH 503
Query: 304 LDLSHNRLDG 313
LDLSHN L G
Sbjct: 504 LDLSHNSLTG 513
Score = 30.8 bits (68), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 25/183 (13%)
Query: 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQ-LDLSINILNGSIPLEIGNLKDLDYLMLQGNK 190
+L++L+++ HL P + +L + L+LS +L+ S + L+DL +L LQGN
Sbjct: 400 QLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSNQHLLAGLQDLRHLNLQGNS 459
Query: 191 L-DGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
DG I + NL ++ G LE+L L S NL +
Sbjct: 460 FQDGSISKT--NLLQMVG--------------------SLEILILSSCNLLSIDQQAFHG 497
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309
L + L++N+L G + ++K L L + NN+ + L+ I++LSHN
Sbjct: 498 LRNVNHLDLSHNSLTGDSMDALSHLKGL-YLNMASNNIRIIPPHLLPALSQQSIINLSHN 556
Query: 310 RLD 312
LD
Sbjct: 557 PLD 559
>pdb|2V9S|A Chain A, Second Lrr Domain Of Human Slit2
pdb|2V9S|B Chain B, Second Lrr Domain Of Human Slit2
pdb|2V9S|C Chain C, Second Lrr Domain Of Human Slit2
pdb|2V9S|D Chain D, Second Lrr Domain Of Human Slit2
Length = 220
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 66/162 (40%), Gaps = 6/162 (3%)
Query: 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDL 162
TC N++ + G + +P I + L QN + P + L ++DL
Sbjct: 10 TCSNNIVDCRGKGLTEIPTNLPETITEI------RLEQNTIKVIPPGAFSPYKKLRRIDL 63
Query: 163 SINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPRE 222
S N ++ P L+ L+ L+L GNK+ L S L L L L+ NK++
Sbjct: 64 SNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINXLRVDA 123
Query: 223 VGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLV 264
+L L LL L N L T L + +LA N +
Sbjct: 124 FQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165
>pdb|3ZYJ|A Chain A, Netring1 In Complex With Ngl1
pdb|3ZYJ|C Chain C, Netring1 In Complex With Ngl1
Length = 440
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 50/115 (43%), Gaps = 15/115 (13%)
Query: 342 EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401
E+ L Y+ + +G L+NL LNL L P L +L L
Sbjct: 169 ELKRLSYISEGAFEG-------------LSNLRYLNLAMCNLREI--PNLTPLIKLDELD 213
Query: 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456
LS N LS I P L HL++L + + I + N+ ++ ++L+ NNL+
Sbjct: 214 LSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT 268
Score = 29.6 bits (65), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 54/112 (48%), Gaps = 7/112 (6%)
Query: 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYL 234
+ NL+ L+ M ++ L P L KL L+LS N LS P L L+ L++
Sbjct: 184 LSNLRYLNLAMCNLREIPNLTP-----LIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWM 238
Query: 235 DSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRN 285
+ + + +L L+E LA+NNL LP ++ + +L+ + LH N
Sbjct: 239 IQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIHLHHN 289
>pdb|3O6N|A Chain A, Crystal Structure Of Apl1 Leucine-Rich Repeat Domain
Length = 390
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 69/163 (42%), Gaps = 30/163 (18%)
Query: 106 PNLITFKISGTGFLSGRIPSE-IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSI 164
P L T +S RI + A + LQ L LS N LT S I S LF ++S
Sbjct: 141 PKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHANVSY 195
Query: 165 NILNG-SIPLEIGNLK---------------DLDYLMLQGNKLDGLIPSSIGNLTKLTGL 208
N+L+ +IP+ + L +L L LQ N L + + N L +
Sbjct: 196 NLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPGLVEV 253
Query: 209 NLSLNKLSGRLPREVGNLKILELLYLDSNNLTG------PIPS 245
+LS N+L + ++ LE LY+ +N L PIP+
Sbjct: 254 DLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 296
>pdb|2R9U|A Chain A, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|B Chain B, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|C Chain C, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
pdb|2R9U|D Chain D, Crystal Structure Of Lamprey Variable Lymphocyte Receptor
2913 Ectodomain
Length = 174
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 63/146 (43%), Gaps = 11/146 (7%)
Query: 120 SGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLK 179
S PS+ S Q L QN ++P+ I + + +L L+ N + P +L
Sbjct: 3 SAGCPSQC---SCDQTLVNCQNIRLASVPAGIPTDKQ--RLWLNNNQITKLEPGVFDHLV 57
Query: 180 DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPR-EVGNLKILELLYLDSNN 238
+L L NKL + LT+LT L+L+ N L +PR NLK L +YL +N
Sbjct: 58 NLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKS-IPRGAFDNLKSLTHIYLYNNP 116
Query: 239 LTGPIPSTLYHLNPLIEWYLAYNNLV 264
+Y L W + ++V
Sbjct: 117 WDCECRDIMY----LRNWVADHTSIV 138
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 59/137 (43%), Gaps = 10/137 (7%)
Query: 142 HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGN 201
H + PS+ + L NI S+P I D L L N++ L P +
Sbjct: 1 HHSAGCPSQCSCDQTLVNCQ---NIRLASVPAGIPT--DKQRLWLNNNQITKLEPGVFDH 55
Query: 202 LTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN-NLTGPIPSTLY-HLNPLIEWYLA 259
L L L + NKL+ +P V + K+ +L LD N N IP + +L L YL
Sbjct: 56 LVNLQQLYFNSNKLTA-IPTGVFD-KLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL- 112
Query: 260 YNNLVGPLPKEVGNMKN 276
YNN +++ ++N
Sbjct: 113 YNNPWDCECRDIMYLRN 129
>pdb|3B2D|A Chain A, Crystal Structure Of Human Rp105MD-1 Complex
pdb|3B2D|B Chain B, Crystal Structure Of Human Rp105MD-1 Complex
Length = 603
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
Query: 397 LQNLVLSHNTL--SGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNN 454
LQ L LSHN + S ++ NL+HL+ L+LSHN G P + +DL+
Sbjct: 349 LQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAFTR 408
Query: 455 LSGVVPAS 462
L P S
Sbjct: 409 LHINAPQS 416
Score = 32.0 bits (71), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 88/339 (25%), Positives = 140/339 (41%), Gaps = 21/339 (6%)
Query: 129 ALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188
++LQ L+L+ HL G +PS + L +L LS+N + + N L +L ++G
Sbjct: 273 CFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFDQLCQISAANFPSLTHLYIRG 331
Query: 189 N-KLDGLIPSSIGNLTKLTGLNLSLNKL--SGRLPREVGNLKILELLYLDSNNLTGPIPS 245
N K L + L L L+LS N + S ++ NL L+ L L N G + S
Sbjct: 332 NVKKLHLGVGCLEKLGNLQTLDLSHNDIEASDCCSLQLKNLSHLQTLNLSHNEPLG-LQS 390
Query: 246 TLYHLNPLIEWY-LAYNNLVGPLPKE-VGNMKNLKILLLHRNNLTGPISSTIGYLNLLEI 303
+ P +E LA+ L P+ N+ L++L L L + L +L
Sbjct: 391 QAFKECPQLELLDLAFTRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRH 450
Query: 304 LDLSHNRL-DGPIP-----STIGXXXXXXXXXXXXXXXXGLLPREVGNLKYLDSRSLDGN 357
L+L N DG I T+G +G + ++D L N
Sbjct: 451 LNLKGNHFQDGTITKTNLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVD---LSHN 507
Query: 358 NLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN 417
+L ++ +L + LNL N ++ P L SQ + LSHN L S I
Sbjct: 508 SLTCDSIDSLSHLKGIY-LNLAANSINIISPRLLPILSQQSTINLSHNPLDCT-CSNIHF 565
Query: 418 LTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456
LT ++ + + + G+ + N P++ V LS LS
Sbjct: 566 LTWYKE---NLHKLEGSEETTCANPPSLRGVKLSDVKLS 601
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 91/375 (24%), Positives = 146/375 (38%), Gaps = 44/375 (11%)
Query: 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLD 192
++ LNL ++ + + L +LDL+ L G +P + L L L+L N D
Sbjct: 253 VESLNLQEHRFSDISSTTFQCFTQLQELDLTATHLKG-LPSGMKGLNLLKKLVLSVNHFD 311
Query: 193 GLIPSSIGNLTKLTGLNLSLN----KLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLY 248
L S N LT L + N L ++GNL+ L+L + N++ +L
Sbjct: 312 QLCQISAANFPSLTHLYIRGNVKKLHLGVGCLEKLGNLQTLDLSH---NDIEASDCCSL- 367
Query: 249 HLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSH 308
++ N+ +L+ L L N G S LE+LDL+
Sbjct: 368 ---------------------QLKNLSHLQTLNLSHNEPLGLQSQAFKECPQLELLDLAF 406
Query: 309 NRLDGPIPSTIGXXXXXXXXXXXXXXXXGLLPRE-VGNLKYLDSRSLDGNNLI-GPIPPT 366
RL P + + + L L +L GN+ G I T
Sbjct: 407 TRLHINAPQSPFQNLHFLQVLNLTYCFLDTSNQHLLAGLPVLRHLNLKGNHFQDGTITKT 466
Query: 367 --IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLR-- 422
+ + +L L L L S + ++ ++ LSHN+L+ I +L+HL+
Sbjct: 467 NLLQTVGSLEVLILSSCGLLSIDQQAFHSLGKMSHVDLSHNSLTC---DSIDSLSHLKGI 523
Query: 423 QLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNL-ELENS 481
L+L+ N IN P L + S ++LS N L + I L + NL +LE S
Sbjct: 524 YLNLAANSINIISPRLLPILSQQSTINLSHNPLD----CTCSNIHFLTWYKENLHKLEGS 579
Query: 482 TSSENAPPPQAKPFK 496
+ A PP + K
Sbjct: 580 EETTCANPPSLRGVK 594
>pdb|1M10|B Chain B, Crystal Structure Of The Complex Of Glycoprotein Ib Alpha
And The Von Willebrand Factor A1 Domain
Length = 290
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPL-EIGNLKDLDYLML 186
G L L L+LS N L ++P + L LD+S N L S+PL + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGN-LKILELLYLDSNNLTGPIPS 245
+GN+L L P + KL L+L+ N+L+ LP + N L+ L+ L L N+L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 246 TLY--HLNPL 253
+ HL P
Sbjct: 190 GFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L +P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
P +E NN + LP + N ++NL LLL N+L
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3P72|A Chain A, Structure Of Platelet Glycoprotein 1b Alpha With A Bound
Peptide Inhibitor
Length = 269
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPL-EIGNLKDLDYLML 186
G L L L+LS N L ++P + L LD+S N L S+PL + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGN-LKILELLYLDSNNLTGPIPS 245
+GN+L L P + KL L+L+ N+L+ LP + N L+ L+ L L N+L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 246 TLY--HLNPL 253
+ HL P
Sbjct: 190 GFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L +P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
P +E NN + LP + N ++NL LLL N+L
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1U0N|D Chain D, The Ternary Von Willebrand Factor A1-Glycoprotein Ibalpha-
Botrocetin Complex
Length = 265
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPL-EIGNLKDLDYLML 186
G L L L+LS N L ++P + L LD+S N L S+PL + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGN-LKILELLYLDSNNLTGPIPS 245
+GN+L L P + KL L+L+ N+L+ LP + N L+ L+ L L N+L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 246 TLY--HLNPL 253
+ HL P
Sbjct: 190 GFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L +P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
P +E NN + LP + N ++NL LLL N+L
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1M0Z|A Chain A, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
pdb|1M0Z|B Chain B, Crystal Structure Of The Von Willebrand Factor Binding
Domain Of Glycoprotein Ib Alpha
Length = 290
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 67/130 (51%), Gaps = 8/130 (6%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPL-EIGNLKDLDYLML 186
G L L L+LS N L ++P + L LD+S N L S+PL + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGN-LKILELLYLDSNNLTGPIPS 245
+GN+L L P + KL L+L+ N+L+ LP + N L+ L+ L L N+L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNQLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 246 TLY--HLNPL 253
+ HL P
Sbjct: 190 GFFGSHLLPF 199
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L +P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
P +E NN + LP + N ++NL LLL N+L
Sbjct: 146 PTPKLEKLSLANNQLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex
pdb|3A7B|A Chain A, Crystal Structure Of Tlr2-Streptococcus Pneumoniae
Lipoteichoic Acid Complex
pdb|3A7C|A Chain A, Crystal Structure Of Tlr2-Pe-Dtpa Complex
Length = 580
Score = 32.3 bits (72), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 368 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427
G + SL+L +N+++ +L C+ LQ L+L + ++ I +L L LDLS
Sbjct: 49 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 108
Query: 428 HNFINGTIPSQLGNIPNISAVDLSKN 453
N ++ S G + ++ ++L N
Sbjct: 109 DNHLSSLSSSWFGPLSSLKYLNLMGN 134
>pdb|3OJA|B Chain B, Crystal Structure Of Lrim1APL1C COMPLEX
Length = 597
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 48/167 (28%), Positives = 70/167 (41%), Gaps = 30/167 (17%)
Query: 102 FTCFPNLITFKISGTGFLSGRIPSE-IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQL 160
F P L T +S RI + A + LQ L LS N LT S I S LF
Sbjct: 143 FHNTPKLTTLSMSNNNL--ERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPS---LFHA 197
Query: 161 DLSINILNG-SIPLEIGNLK---------------DLDYLMLQGNKLDGLIPSSIGNLTK 204
++S N+L+ +IP+ + L +L L LQ N L + + N
Sbjct: 198 NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTILKLQHNNLTD--TAWLLNYPG 255
Query: 205 LTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG------PIPS 245
L ++LS N+L + ++ LE LY+ +N L PIP+
Sbjct: 256 LVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNLYGQPIPT 302
>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By
Binding Of A Tri-acylated Lipopeptide
pdb|2Z82|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By
Binding Of A Tri-Acylated Lipopeptide
Length = 549
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%)
Query: 368 GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427
G + SL+L +N+++ +L C+ LQ L+L + ++ I +L L LDLS
Sbjct: 23 GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS 82
Query: 428 HNFINGTIPSQLGNIPNISAVDLSKN 453
N ++ S G + ++ ++L N
Sbjct: 83 DNHLSSLSSSWFGPLSSLKYLNLMGN 108
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type
Iii Effector Xcv3220 (Xopl)
Length = 328
Score = 32.0 bits (71), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 1/105 (0%)
Query: 339 LPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ 398
LP + NL+ L S + N+ + + P I +L L L+L + PP + L+
Sbjct: 198 LPASIANLQNLKSLKIR-NSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256
Query: 399 NLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIP 443
L+L + P +I LT L +LDL +PS + +P
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLP 301
>pdb|2XOT|A Chain A, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
pdb|2XOT|B Chain B, Crystal Structure Of Neuronal Leucine Rich Repeat Protein
Amigo-1
Length = 361
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 400 LVLSHNTLSGIFPSEI-GNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455
L LSHN LS + LT+L L LSHN +N +PN+ +DLS N+L
Sbjct: 44 LDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHL 100
>pdb|1SQ0|B Chain B, Crystal Structure Of The Complex Of The Wild-Type Von
Willebrand Factor A1 Domain And Glycoprotein Ib Alpha At
2.6 Angstrom Resolution
Length = 288
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 47/130 (36%), Positives = 66/130 (50%), Gaps = 8/130 (6%)
Query: 128 GALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPL-EIGNLKDLDYLML 186
G L L L+LS N L ++P + L LD+S N L S+PL + L +L L L
Sbjct: 74 GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYL 131
Query: 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGN-LKILELLYLDSNNLTGPIPS 245
+GN+L L P + KL L+L+ N L+ LP + N L+ L+ L L N+L IP
Sbjct: 132 KGNELKTLPPGLLTPTPKLEKLSLANNDLT-ELPAGLLNGLENLDTLLLQENSLYT-IPK 189
Query: 246 TLY--HLNPL 253
+ HL P
Sbjct: 190 GFFGSHLLPF 199
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 49/159 (30%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L +P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKT-LPPGLLT 145
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
P +E NN + LP + N ++NL LLL N+L
Sbjct: 146 PTPKLEKLSLANNDLTELPAGLLNGLENLDTLLLQENSL 184
>pdb|1GWB|B Chain B, Structure Of Glycoprotein 1b
pdb|1GWB|A Chain A, Structure Of Glycoprotein 1b
Length = 281
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 36 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 93
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L P L
Sbjct: 94 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 147
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
L + LA NNL LP + N ++NL LLL N+L
Sbjct: 148 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 185
>pdb|1P8V|A Chain A, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Alpha-thrombin At 2.6a
Length = 279
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRCELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
L + LA NNL LP + N ++NL LLL N+L
Sbjct: 147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|4ARN|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|C Chain C, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARN|D Chain D, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor
pdb|4ARR|A Chain A, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
pdb|4ARR|B Chain B, Crystal Structure Of The N-terminal Domain Of Drosophila
Toll Receptor With The Magic Triangle I3c
Length = 279
Score = 30.4 bits (67), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Query: 125 SEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184
+ L L+ + LT + + RNL L+L NI L +L++L+ +
Sbjct: 117 QHLDRLHGLKRFRFTTRRLTHIPANLLTDMRNLSHLELRANIEEMPSHL-FDDLENLESI 175
Query: 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIP 244
NKL + G + KL LNL+ N+L L L+ ++L +N P
Sbjct: 176 EFGSNKLRQMPRGIFGKMPKLKQLNLASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 235
Query: 245 STLY 248
Y
Sbjct: 236 RIDY 239
>pdb|1P9A|G Chain G, Crystal Structure Of N-terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-alpha At 1.7 Angstrom
Resolution
pdb|1QYY|A Chain A, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
pdb|1QYY|G Chain G, Crystal Structure Of N-Terminal Domain Of Human Platelet
Receptor Glycoprotein Ib-Alpha At 2.8 Angstrom
Resolution
Length = 290
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
L + LA NNL LP + N ++NL LLL N+L
Sbjct: 147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|3PMH|G Chain G, Mechanism Of Sulfotyrosine-Mediated Glycoprotein Ib
Interaction With Two Distinct Alpha-Thrombin Sites
Length = 290
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
L + LA NNL LP + N ++NL LLL N+L
Sbjct: 147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|1OOK|G Chain G, Crystal Structure Of The Complex Of Platelet Receptor
Gpib-alpha And Human Alpha-thrombin
Length = 290
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 51/159 (32%), Positives = 77/159 (48%), Gaps = 15/159 (9%)
Query: 135 VLNLSQN-----HLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGN 189
+L+LS+N L +P + NL + +L+ ++G++P+ +G L DL + LQ
Sbjct: 35 ILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDGTLPV-LGTL-DLSHNQLQSL 92
Query: 190 KLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYH 249
L G L LT L++S N+L+ + L L+ LYL N L P L
Sbjct: 93 PLLG------QTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146
Query: 250 LNPLIEWYLAYNNLVGPLPKEVGN-MKNLKILLLHRNNL 287
L + LA NNL LP + N ++NL LLL N+L
Sbjct: 147 TPKLEKLSLANNNLTE-LPAGLLNGLENLDTLLLQENSL 184
>pdb|4AW4|A Chain A, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|B Chain B, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
pdb|4AW4|C Chain C, Engineered Variant Of Listeria Monocytogenes Inlb
Internalin Domain With An Additional Leucine Rich Repeat
Inserted
Length = 311
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 35/65 (53%), Gaps = 4/65 (6%)
Query: 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426
I YL NLTSLNL NQ++ P + + + L L+ N L+ I P + NL +L L L
Sbjct: 62 IQYLPNLTSLNLSNNQITDISPIQYL--PNVTKLFLNGNKLTDIKP--LANLKNLGWLFL 117
Query: 427 SHNFI 431
N +
Sbjct: 118 DENKV 122
>pdb|1XEU|A Chain A, Crystal Structure Of Internalin C From Listeria
Monocytogenes
Length = 263
Score = 29.3 bits (64), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 57/113 (50%), Gaps = 15/113 (13%)
Query: 202 LTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN---NLTGPIPSTLYHLNPLIEWYL 258
T L L+LS N++S P + +L LE L ++ N NL G IPS L +L
Sbjct: 62 FTNLKELHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNG-IPSAC-----LSRLFL 113
Query: 259 AYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRL 311
N L + ++KNL+IL + N L + +G+L+ LE+LDL N +
Sbjct: 114 DNNELRDT--DSLIHLKNLEILSIRNNKLKSIV--MLGFLSKLEVLDLHGNEI 162
>pdb|3KYP|A Chain A, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|B Chain B, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|C Chain C, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|D Chain D, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|E Chain E, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
pdb|3KYP|F Chain F, Crystal Structure Of Nucleosome Assembly Protein S
(Pfnaps) Plasmodium Falciparum
Length = 193
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 18/34 (52%)
Query: 399 NLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432
N + H LS I P +I L HL +LDL N N
Sbjct: 54 NTLRKHPALSDIVPEDIDILNHLVKLDLKDNMDN 87
>pdb|2B1X|A Chain A, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|C Chain C, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B1X|E Chain E, Crystal Structure Of Naphthalene 1,2-dioxygenase From
Rhodococcus Sp.
pdb|2B24|A Chain A, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|C Chain C, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
pdb|2B24|E Chain E, Crystal Structure Of Naphthalene 1,2-Dioxygenase From
Rhodococcus Sp. Bound To Indole
Length = 470
Score = 28.5 bits (62), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 67 CKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFK 112
C + G T ++ GS+V + + + D GN + S +N PNL ++K
Sbjct: 108 CPYHGWTYSNTGSLVGVPAGK-DAYGNQLKKSDWNLRPMPNLASYK 152
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.134 0.387
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,949,687
Number of Sequences: 62578
Number of extensions: 565238
Number of successful extensions: 1940
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1059
Number of HSP's gapped (non-prelim): 551
length of query: 509
length of database: 14,973,337
effective HSP length: 103
effective length of query: 406
effective length of database: 8,527,803
effective search space: 3462288018
effective search space used: 3462288018
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 54 (25.4 bits)