Query 035522
Match_columns 509
No_of_seqs 501 out of 4483
Neff 10.1
Searched_HMMs 46136
Date Fri Mar 29 03:42:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035522.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035522hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00113 leucine-rich repeat r 100.0 1E-55 2.2E-60 490.9 36.5 457 32-500 26-511 (968)
2 PLN00113 leucine-rich repeat r 100.0 2.6E-50 5.6E-55 447.7 28.8 422 77-506 163-612 (968)
3 KOG4194 Membrane glycoprotein 100.0 2.6E-39 5.6E-44 309.4 5.3 379 107-509 79-460 (873)
4 KOG4194 Membrane glycoprotein 100.0 3.4E-37 7.3E-42 295.0 8.8 369 78-453 78-449 (873)
5 KOG0444 Cytoskeletal regulator 100.0 6E-35 1.3E-39 281.6 -3.1 365 104-478 5-376 (1255)
6 KOG0472 Leucine-rich repeat pr 100.0 1.4E-36 3.1E-41 278.8 -13.9 400 79-501 46-541 (565)
7 KOG0444 Cytoskeletal regulator 100.0 2.7E-34 5.8E-39 277.2 -4.8 366 78-456 7-375 (1255)
8 KOG0472 Leucine-rich repeat pr 100.0 1.5E-34 3.2E-39 265.5 -12.6 380 78-477 68-541 (565)
9 KOG0618 Serine/threonine phosp 100.0 8.2E-31 1.8E-35 264.0 -3.3 394 80-500 47-488 (1081)
10 PLN03210 Resistant to P. syrin 99.9 2.6E-25 5.6E-30 248.2 28.3 360 78-454 532-904 (1153)
11 PLN03210 Resistant to P. syrin 99.9 2E-24 4.3E-29 241.2 28.0 337 124-475 551-904 (1153)
12 KOG0618 Serine/threonine phosp 99.9 1.1E-28 2.3E-33 248.8 -8.5 391 78-498 21-462 (1081)
13 KOG4237 Extracellular matrix p 99.9 2.5E-24 5.3E-29 198.3 -2.3 274 107-383 68-358 (498)
14 PRK15387 E3 ubiquitin-protein 99.9 3E-21 6.4E-26 201.1 17.3 266 157-466 203-468 (788)
15 PRK15387 E3 ubiquitin-protein 99.9 2.1E-20 4.7E-25 194.7 18.5 266 131-440 201-466 (788)
16 KOG4237 Extracellular matrix p 99.8 1.4E-23 3.1E-28 193.2 -4.7 386 77-474 66-498 (498)
17 PRK15370 E3 ubiquitin-protein 99.8 1.1E-19 2.5E-24 190.5 18.5 279 131-447 178-461 (754)
18 PRK15370 E3 ubiquitin-protein 99.8 6.4E-19 1.4E-23 184.9 13.1 245 203-478 178-429 (754)
19 cd00116 LRR_RI Leucine-rich re 99.8 3.2E-20 7E-25 180.6 0.6 57 160-216 3-64 (319)
20 cd00116 LRR_RI Leucine-rich re 99.8 2.7E-20 5.8E-25 181.2 -0.7 60 347-406 250-318 (319)
21 KOG0617 Ras suppressor protein 99.7 2.2E-18 4.7E-23 141.5 -4.1 155 153-312 31-186 (264)
22 KOG0617 Ras suppressor protein 99.6 4.8E-18 1E-22 139.5 -5.0 154 274-432 32-186 (264)
23 PLN03150 hypothetical protein; 99.6 1.9E-14 4.2E-19 150.7 11.8 135 29-175 366-510 (623)
24 COG4886 Leucine-rich repeat (L 99.2 5.7E-11 1.2E-15 119.0 10.4 195 159-386 97-292 (394)
25 COG4886 Leucine-rich repeat (L 99.2 3.4E-11 7.4E-16 120.7 8.7 197 135-340 97-294 (394)
26 KOG0532 Leucine-rich repeat (L 99.2 5.7E-13 1.2E-17 129.3 -4.2 194 251-454 75-271 (722)
27 KOG3207 Beta-tubulin folding c 99.2 2.9E-12 6.2E-17 120.8 0.1 206 273-478 119-340 (505)
28 KOG0532 Leucine-rich repeat (L 99.2 7.5E-13 1.6E-17 128.5 -4.4 195 104-309 73-270 (722)
29 PLN03150 hypothetical protein; 99.2 3.7E-11 8E-16 126.1 7.6 107 397-505 420-532 (623)
30 KOG1909 Ran GTPase-activating 99.2 2.4E-12 5.2E-17 118.1 -1.5 134 322-455 156-310 (382)
31 KOG1259 Nischarin, modulator o 99.2 7.7E-12 1.7E-16 112.4 0.9 126 371-500 284-411 (490)
32 KOG1909 Ran GTPase-activating 99.1 6.2E-12 1.3E-16 115.4 -0.4 246 77-335 29-310 (382)
33 KOG4658 Apoptotic ATPase [Sign 99.1 4.1E-11 8.9E-16 128.5 5.4 130 105-238 522-653 (889)
34 KOG4658 Apoptotic ATPase [Sign 99.1 4.6E-11 1E-15 128.1 5.1 151 78-235 523-676 (889)
35 KOG1259 Nischarin, modulator o 99.1 2.7E-11 5.9E-16 108.9 0.5 131 322-458 283-414 (490)
36 KOG3207 Beta-tubulin folding c 99.0 4.5E-11 9.7E-16 112.9 0.6 209 224-432 118-339 (505)
37 PF14580 LRR_9: Leucine-rich r 99.0 4.8E-10 1E-14 96.7 4.8 124 178-306 18-147 (175)
38 PF14580 LRR_9: Leucine-rich r 99.0 4.4E-10 9.5E-15 96.9 3.9 110 127-240 15-126 (175)
39 KOG0531 Protein phosphatase 1, 98.9 1.7E-10 3.8E-15 115.8 -1.5 243 177-433 70-319 (414)
40 KOG0531 Protein phosphatase 1, 98.9 4.1E-10 8.9E-15 113.1 0.6 128 130-264 71-199 (414)
41 PF13855 LRR_8: Leucine rich r 98.8 4.1E-09 8.9E-14 74.6 2.7 60 396-455 2-61 (61)
42 PF13855 LRR_8: Leucine rich r 98.7 1E-08 2.2E-13 72.6 3.0 61 371-431 1-61 (61)
43 KOG1859 Leucine-rich repeat pr 98.6 1.5E-09 3.2E-14 108.8 -5.6 181 316-505 102-296 (1096)
44 PF08263 LRRNT_2: Leucine rich 98.4 2.9E-07 6.3E-12 59.5 4.1 40 34-75 2-43 (43)
45 KOG2120 SCF ubiquitin ligase, 98.3 7.1E-09 1.5E-13 93.5 -7.2 177 180-358 186-374 (419)
46 KOG1859 Leucine-rich repeat pr 98.3 9.4E-09 2E-13 103.2 -7.4 125 276-407 165-291 (1096)
47 KOG2982 Uncharacterized conser 98.3 7E-08 1.5E-12 87.2 -1.4 182 297-478 69-263 (418)
48 COG5238 RNA1 Ran GTPase-activa 98.3 9.2E-08 2E-12 85.4 -1.1 246 78-336 30-316 (388)
49 KOG2120 SCF ubiquitin ligase, 98.2 2.1E-08 4.6E-13 90.5 -6.2 180 203-384 185-376 (419)
50 KOG2982 Uncharacterized conser 98.2 6.3E-07 1.4E-11 81.2 1.2 201 251-451 71-287 (418)
51 KOG4579 Leucine-rich repeat (L 98.1 1.2E-07 2.6E-12 75.9 -3.3 83 347-432 53-136 (177)
52 COG5238 RNA1 Ran GTPase-activa 98.1 7.1E-07 1.5E-11 79.8 0.1 241 103-361 27-317 (388)
53 PF12799 LRR_4: Leucine Rich r 97.9 8.7E-06 1.9E-10 52.7 3.3 37 419-456 1-37 (44)
54 KOG4579 Leucine-rich repeat (L 97.9 6.5E-07 1.4E-11 71.7 -3.1 81 131-214 53-134 (177)
55 PRK15386 type III secretion pr 97.9 6.6E-05 1.4E-09 73.1 9.9 55 273-333 50-104 (426)
56 KOG3665 ZYG-1-like serine/thre 97.9 4.5E-06 9.9E-11 87.9 1.2 134 106-241 122-264 (699)
57 PF12799 LRR_4: Leucine Rich r 97.7 3.7E-05 8.1E-10 49.7 3.4 36 132-168 2-37 (44)
58 KOG1644 U2-associated snRNP A' 97.7 8.8E-05 1.9E-09 63.9 5.8 102 349-452 44-149 (233)
59 PRK15386 type III secretion pr 97.6 0.0004 8.6E-09 67.8 10.1 137 295-454 48-188 (426)
60 KOG3665 ZYG-1-like serine/thre 97.6 4.7E-05 1E-09 80.4 3.2 152 78-233 122-281 (699)
61 KOG1644 U2-associated snRNP A' 97.5 0.00022 4.8E-09 61.5 5.5 16 272-287 110-125 (233)
62 PF13306 LRR_5: Leucine rich r 97.4 0.00059 1.3E-08 56.3 7.7 108 99-212 5-112 (129)
63 PF13306 LRR_5: Leucine rich r 97.4 0.00064 1.4E-08 56.1 7.5 106 126-236 7-112 (129)
64 KOG4341 F-box protein containi 97.2 9.5E-06 2.1E-10 77.1 -6.2 82 132-213 139-226 (483)
65 KOG4341 F-box protein containi 97.2 1.2E-05 2.7E-10 76.3 -5.5 153 250-402 293-459 (483)
66 KOG2739 Leucine-rich acidic nu 97.0 0.00017 3.6E-09 64.9 -0.1 13 129-141 63-75 (260)
67 KOG2739 Leucine-rich acidic nu 96.6 0.0013 2.8E-08 59.2 2.8 107 343-451 39-151 (260)
68 KOG2123 Uncharacterized conser 96.6 0.00012 2.7E-09 66.0 -4.1 100 346-449 18-123 (388)
69 KOG1947 Leucine rich repeat pr 96.4 0.00047 1E-08 71.1 -1.6 15 320-334 359-373 (482)
70 KOG2123 Uncharacterized conser 96.4 0.00019 4.1E-09 64.9 -3.9 57 156-216 20-76 (388)
71 KOG1947 Leucine rich repeat pr 95.7 0.0018 3.8E-08 66.8 -1.6 109 226-334 187-306 (482)
72 PF00560 LRR_1: Leucine Rich R 95.4 0.005 1.1E-07 33.0 0.4 19 445-464 2-20 (22)
73 KOG4308 LRR-containing protein 94.8 0.00027 5.9E-09 71.5 -10.5 83 253-335 89-184 (478)
74 PF00560 LRR_1: Leucine Rich R 94.5 0.014 3.1E-07 31.2 0.6 12 133-144 2-13 (22)
75 KOG4308 LRR-containing protein 92.8 0.0013 2.9E-08 66.5 -9.7 275 203-478 87-446 (478)
76 KOG3864 Uncharacterized conser 91.5 0.027 5.8E-07 49.0 -1.9 83 78-164 101-185 (221)
77 PF13504 LRR_7: Leucine rich r 90.3 0.17 3.8E-06 25.0 1.1 10 445-454 3-12 (17)
78 KOG3864 Uncharacterized conser 88.9 0.08 1.7E-06 46.1 -1.1 80 181-260 103-185 (221)
79 KOG0473 Leucine-rich repeat pr 88.1 0.013 2.9E-07 51.9 -6.4 87 101-191 37-123 (326)
80 KOG0473 Leucine-rich repeat pr 87.3 0.02 4.2E-07 50.9 -5.9 85 369-456 40-124 (326)
81 PF13516 LRR_6: Leucine Rich r 85.2 0.11 2.3E-06 28.4 -1.7 15 443-457 2-16 (24)
82 smart00370 LRR Leucine-rich re 85.0 0.83 1.8E-05 25.3 2.0 13 444-456 3-15 (26)
83 smart00369 LRR_TYP Leucine-ric 85.0 0.83 1.8E-05 25.3 2.0 13 444-456 3-15 (26)
84 KOG3763 mRNA export factor TAP 72.8 1.6 3.5E-05 44.2 1.0 76 417-494 216-307 (585)
85 smart00365 LRR_SD22 Leucine-ri 70.9 3.8 8.2E-05 22.9 1.8 14 443-456 2-15 (26)
86 smart00364 LRR_BAC Leucine-ric 68.2 3.5 7.5E-05 23.0 1.2 14 465-478 3-16 (26)
87 smart00368 LRR_RI Leucine rich 66.2 5.1 0.00011 22.7 1.8 15 443-457 2-16 (28)
88 KOG4242 Predicted myosin-I-bin 63.9 41 0.00089 33.8 8.4 60 397-456 415-481 (553)
89 KOG4242 Predicted myosin-I-bin 59.2 66 0.0014 32.4 8.9 35 421-455 415-452 (553)
90 KOG3763 mRNA export factor TAP 57.1 6.1 0.00013 40.2 1.6 66 393-458 216-285 (585)
91 smart00367 LRR_CC Leucine-rich 42.9 18 0.00039 19.9 1.4 16 442-457 1-17 (26)
No 1
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=1e-55 Score=490.88 Aligned_cols=457 Identities=37% Similarity=0.563 Sum_probs=324.5
Q ss_pred CchhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEE
Q 035522 32 TASDASSAIQLEREALLNSGWWNSSWATANYTSDHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITF 111 (509)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L 111 (509)
..++|++||+++|+++.++.+++.+|.. ..++|.|.|++|+..++|+.|+++++.+.+.+ +..+..+++|+.|
T Consensus 26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~---~~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~----~~~~~~l~~L~~L 98 (968)
T PLN00113 26 LHAEELELLLSFKSSINDPLKYLSNWNS---SADVCLWQGITCNNSSRVVSIDLSGKNISGKI----SSAIFRLPYIQTI 98 (968)
T ss_pred CCHHHHHHHHHHHHhCCCCcccCCCCCC---CCCCCcCcceecCCCCcEEEEEecCCCccccC----ChHHhCCCCCCEE
Confidence 3568899999999999877777889974 67899999999987789999999999999877 7889999999999
Q ss_pred ecCCCCCcceeCchhcc-CCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCC
Q 035522 112 KISGTGFLSGRIPSEIG-ALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNK 190 (509)
Q Consensus 112 ~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~ 190 (509)
++++|. +.+.+|..+. .+++|++|++++|.+.+.+|. +.+++|++|++++|.+.+.+|..++++++|++|++++|.
T Consensus 99 ~Ls~n~-~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 99 NLSNNQ-LSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred ECCCCc-cCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 999999 8888887754 888899999888888776664 356777777777777777777777777777777777777
Q ss_pred CCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchh
Q 035522 191 LDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKE 270 (509)
Q Consensus 191 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~ 270 (509)
+.+.+|..+.++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 77777777777777777777777777777777777777777777777777777777777777777777777777777777
Q ss_pred ccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCC
Q 035522 271 VGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLD 350 (509)
Q Consensus 271 l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~ 350 (509)
+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..+..+++|+
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~ 335 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQ 335 (968)
T ss_pred HhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCC
Confidence 77777777777777777666666666677777777777777666666666666777777776666666666666666666
Q ss_pred EEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCc------------------------eeeeeccc
Q 035522 351 SRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ------------------------NLVLSHNT 406 (509)
Q Consensus 351 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~------------------------~L~L~~n~ 406 (509)
.|++++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+ .|++++|+
T Consensus 336 ~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 336 VLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred EEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 666666666666666666666666666666666555555444444444 44444444
Q ss_pred CCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccc--cCCCeEecccCccccCCCCCC
Q 035522 407 LSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV--RRIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 407 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~--~~l~~L~ls~N~l~~~~~ip~ 484 (509)
+++.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|++.+.+|..+ .+++.|++++|++++ .+|.
T Consensus 416 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~~~L~~L~ls~n~l~~--~~~~ 493 (968)
T PLN00113 416 FSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSG--AVPR 493 (968)
T ss_pred eeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCcccccccceEEECcCCccCC--ccCh
Confidence 444444444455555555555555555555444555555555555555555555432 345566666666666 5554
Q ss_pred --CCCCCCCccCcCCCcC
Q 035522 485 --ENAPPPQAKPFKGNKG 500 (509)
Q Consensus 485 --~~~~~l~~l~l~~N~~ 500 (509)
..++++..+++++|..
T Consensus 494 ~~~~l~~L~~L~Ls~N~l 511 (968)
T PLN00113 494 KLGSLSELMQLKLSENKL 511 (968)
T ss_pred hhhhhhccCEEECcCCcc
Confidence 4556666777777654
No 2
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=2.6e-50 Score=447.69 Aligned_cols=422 Identities=37% Similarity=0.509 Sum_probs=338.2
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..+++.|+++++.+.+.+ +..+.++++|++|++++|. +.+.+|..++++++|++|++++|.+.+.+|..++++++
T Consensus 163 l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~ 237 (968)
T PLN00113 163 FSSLKVLDLGGNVLVGKI----PNSLTNLTSLEFLTLASNQ-LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTS 237 (968)
T ss_pred CCCCCEEECccCcccccC----ChhhhhCcCCCeeeccCCC-CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCC
Confidence 357889999999888777 7788889999999999998 78888888999999999999999888888888888999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..+.++++|++|++++
T Consensus 238 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~ 317 (968)
T PLN00113 238 LNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFS 317 (968)
T ss_pred CCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCC
Confidence 99999999988888888888888888888888888888888888888888888888888878888888888888888888
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCc
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (509)
|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..+++|+.|++++|.+.+.+|
T Consensus 318 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p 397 (968)
T PLN00113 318 NNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIP 397 (968)
T ss_pred CccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCC
Confidence 88887778888888888888888888877777777777777777777777766666666555556666666555555555
Q ss_pred cccCCCCCcCeeeCccccCCccCcccccCCCCCC------------------------EEEcCCCcCCCCCccccCCCCC
Q 035522 317 STIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLD------------------------SRSLDGNNLIGPIPPTIGYLTN 372 (509)
Q Consensus 317 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~------------------------~L~L~~n~l~~~~~~~~~~l~~ 372 (509)
..+..+++|+.|++++|.+++..|..+..++.|+ .|++++|.+.+.+|..+ ..++
T Consensus 398 ~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~ 476 (968)
T PLN00113 398 KSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKR 476 (968)
T ss_pred HHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-cccc
Confidence 5555555555555555555554554444444444 44555544444444433 2456
Q ss_pred CCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcC
Q 035522 373 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452 (509)
Q Consensus 373 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 452 (509)
|+.|++++|++++..|..+.++++|+.|++++|.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++
T Consensus 477 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~ 556 (968)
T PLN00113 477 LENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQ 556 (968)
T ss_pred ceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCC
Confidence 77777777777777777888888999999999999989999999999999999999999999999999999999999999
Q ss_pred CcCcccCCccccC---CCeEecccCccccCCCCCC-CCCCCCCccCcCCCcCCCCccc
Q 035522 453 NNLSGVVPASVRR---IPKLIVSENNLELENSTSS-ENAPPPQAKPFKGNKGKQRKIV 506 (509)
Q Consensus 453 N~l~~~~~~~~~~---l~~L~ls~N~l~~~~~ip~-~~~~~l~~l~l~~N~~lc~~~~ 506 (509)
|++++.+|..+.. ++++++++|++++ .+|. +.|..+...++.|||.+|+...
T Consensus 557 N~l~~~~p~~l~~l~~L~~l~ls~N~l~~--~~p~~~~~~~~~~~~~~~n~~lc~~~~ 612 (968)
T PLN00113 557 NQLSGEIPKNLGNVESLVQVNISHNHLHG--SLPSTGAFLAINASAVAGNIDLCGGDT 612 (968)
T ss_pred CcccccCChhHhcCcccCEEeccCCccee--eCCCcchhcccChhhhcCCccccCCcc
Confidence 9999999977654 5699999999999 8998 7788888999999999998653
No 3
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=2.6e-39 Score=309.43 Aligned_cols=379 Identities=23% Similarity=0.217 Sum_probs=223.8
Q ss_pred CCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEC
Q 035522 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLML 186 (509)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 186 (509)
.-+.|++++|. +...-+..|.++++|+++++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.+..++.|+.|||
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDL 156 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDL 156 (873)
T ss_pred ceeeeeccccc-cccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhh
Confidence 34557777776 66555666667777777777776666 66665555566777777776666544455666666666666
Q ss_pred cCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCC
Q 035522 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGP 266 (509)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 266 (509)
+.|.++.+.-..|..-.++++|++++|.|+....+.|.++.+|.+|.++.|+++...+..|.++++|+.|++..|.+.-.
T Consensus 157 SrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iriv 236 (873)
T KOG4194|consen 157 SRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIV 236 (873)
T ss_pred hhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeee
Confidence 66666655444555556666666666666655555666666666666666666644444555566666666666665533
Q ss_pred CchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCC
Q 035522 267 LPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNL 346 (509)
Q Consensus 267 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 346 (509)
---.|..+++|+.|.+..|++...-...|..+.++++|+++.|++...-..|+.+++.|+.|++|+|.+....+..+..+
T Consensus 237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft 316 (873)
T KOG4194|consen 237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT 316 (873)
T ss_pred hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence 23345556666666666666554444455556666666666666555444555556666666666666655555555555
Q ss_pred CCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCc---ccccCCCcCCe
Q 035522 347 KYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFP---SEIGNLTHLRQ 423 (509)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~---~~~~~l~~L~~ 423 (509)
++|++|+|+.|+++...+..|..+..|+.|+|++|.+...-...|..+++|++|+|++|.+...+- ..|.++++|+.
T Consensus 317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~Lrk 396 (873)
T KOG4194|consen 317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRK 396 (873)
T ss_pred ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhh
Confidence 666666666666655555555555566666666666554434445555556666666655542221 23445555556
Q ss_pred EecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCC
Q 035522 424 LDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQR 503 (509)
Q Consensus 424 L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~ 503 (509)
|++.+|++...-...|..++.|++|||.+|.|..+-|..|..+ .|+.+-+..-..+|+
T Consensus 397 L~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m----------------------~Lk~Lv~nSssflCD 454 (873)
T KOG4194|consen 397 LRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM----------------------ELKELVMNSSSFLCD 454 (873)
T ss_pred eeecCceeeecchhhhccCcccceecCCCCcceeecccccccc----------------------hhhhhhhcccceEEe
Confidence 6666665553333455555555555555555554444433322 455555666667888
Q ss_pred ccccCC
Q 035522 504 KIVTRL 509 (509)
Q Consensus 504 ~~~~~l 509 (509)
|.+.||
T Consensus 455 Cql~Wl 460 (873)
T KOG4194|consen 455 CQLKWL 460 (873)
T ss_pred ccHHHH
Confidence 888875
No 4
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=100.00 E-value=3.4e-37 Score=295.02 Aligned_cols=369 Identities=23% Similarity=0.219 Sum_probs=326.9
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
...+.|++++|.+...- ...|.++++|+.+++..|. + ..+|.......+|+.|+|.+|.++.+-...+..++.|
T Consensus 78 ~~t~~LdlsnNkl~~id----~~~f~nl~nLq~v~l~~N~-L-t~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~al 151 (873)
T KOG4194|consen 78 SQTQTLDLSNNKLSHID----FEFFYNLPNLQEVNLNKNE-L-TRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPAL 151 (873)
T ss_pred cceeeeeccccccccCc----HHHHhcCCcceeeeeccch-h-hhcccccccccceeEEeeeccccccccHHHHHhHhhh
Confidence 46788999999887644 6678899999999999997 4 4678866777789999999999998888889999999
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
+.|||+.|.++..--..|..-.++++|+|++|+|+..-...|..+.+|..|.++.|+++...+..|+++++|+.|++..|
T Consensus 152 rslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN 231 (873)
T KOG4194|consen 152 RSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRN 231 (873)
T ss_pred hhhhhhhchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhcccc
Confidence 99999999999554456777789999999999999888889999999999999999999777778899999999999999
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCcc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPS 317 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 317 (509)
++...--..|..+++|+.|.+..|.+...-...|..+.+++.|+|+.|+++..-..++.++++|+.|+++.|.|....++
T Consensus 232 ~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d 311 (873)
T KOG4194|consen 232 RIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHID 311 (873)
T ss_pred ceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecc
Confidence 98744355688999999999999999987778899999999999999999877777888999999999999999988888
Q ss_pred ccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCc---ccccCC
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIP---PELMNC 394 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~~~~~ 394 (509)
.++.+++|++|++++|+++...+..|..+..|+.|+|+.|.+...-...|..+.+|+.|||++|.++..+. ..|..+
T Consensus 312 ~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl 391 (873)
T KOG4194|consen 312 SWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGL 391 (873)
T ss_pred hhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccc
Confidence 89999999999999999998888899999999999999999986666678889999999999999886443 347779
Q ss_pred ccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCC
Q 035522 395 SQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453 (509)
Q Consensus 395 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N 453 (509)
++|+.|.+.+|++..+.-..|.+++.|++|+|.+|.|...-|..|..+ .|+.|.++.-
T Consensus 392 ~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nSs 449 (873)
T KOG4194|consen 392 PSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNSS 449 (873)
T ss_pred hhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhccc
Confidence 999999999999997666789999999999999999998889999988 8998887643
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.98 E-value=6e-35 Score=281.61 Aligned_cols=365 Identities=27% Similarity=0.399 Sum_probs=310.6
Q ss_pred CCCCCcEEecCCCCCcc-eeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 104 CFPNLITFKISGTGFLS-GRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 104 ~l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
-++..|-.|+++|. ++ +.+|..+..+++++-|.|....+. .+|..++.+.+|++|.+++|++. .+-..++.++.|+
T Consensus 5 VLpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LR 81 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLR 81 (1255)
T ss_pred ccceeecccccCCc-CCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhH
Confidence 45677888999999 55 678999999999999999988887 88999999999999999999987 5556688899999
Q ss_pred EEECcCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccC
Q 035522 183 YLMLQGNKLDG-LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 183 ~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
.+.+++|++.. -+|..+.++..|+.|++++|++. ..|..+..-+++-+|++++|++....-..+.+++.|-.|++++|
T Consensus 82 sv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N 160 (1255)
T KOG0444|consen 82 SVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN 160 (1255)
T ss_pred HHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence 99999998743 36778889999999999999998 78888999999999999999998443344668899999999999
Q ss_pred cCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCC-CCCccccCCCCCcCeeeCccccCCccCc
Q 035522 262 NLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLD-GPIPSTIGNLTNLTSLVLSSNQLSGLLP 340 (509)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 340 (509)
++. .+|..+..+..|+.|.|++|.+....-.-+..+++|+.|.+++.+-+ ..+|..+..+.+|..+++|.|.+. .+|
T Consensus 161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vP 238 (1255)
T KOG0444|consen 161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVP 238 (1255)
T ss_pred hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cch
Confidence 987 56777888999999999999886544444556778888999987543 368888999999999999999987 789
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCC-cCcccccCCC
Q 035522 341 REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG-IFPSEIGNLT 419 (509)
Q Consensus 341 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~ 419 (509)
..+.++.+|+.|++++|+++ .+........+|++|+++.|+++ .+|.+++.+++|+.|++.+|+++- -+|..++.+.
T Consensus 239 ecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~ 316 (1255)
T KOG0444|consen 239 ECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLI 316 (1255)
T ss_pred HHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhh
Confidence 99999999999999999998 34444556678999999999999 899999999999999999999863 4889999999
Q ss_pred cCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcc---ccCCCeEecccCcccc
Q 035522 420 HLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPAS---VRRIPKLIVSENNLEL 478 (509)
Q Consensus 420 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~---~~~l~~L~ls~N~l~~ 478 (509)
+|+.+...+|.+. .+|..+..|.+|+.|.|+.|.+. .+|+. +..+..||+..|.=.-
T Consensus 317 ~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLV 376 (1255)
T KOG0444|consen 317 QLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLV 376 (1255)
T ss_pred hhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCcc
Confidence 9999999999997 89999999999999999999886 45654 4566799999997544
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.98 E-value=1.4e-36 Score=278.81 Aligned_cols=400 Identities=32% Similarity=0.426 Sum_probs=257.9
Q ss_pred CEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCc
Q 035522 79 SIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLF 158 (509)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~ 158 (509)
....+.++.+.+... ...+..+..+.++++.+|. .. .+|.+++++..++.++.++|+++ .+|..++.+..|+
T Consensus 46 ~l~~lils~N~l~~l-----~~dl~nL~~l~vl~~~~n~-l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~ 117 (565)
T KOG0472|consen 46 DLQKLILSHNDLEVL-----REDLKNLACLTVLNVHDNK-LS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLV 117 (565)
T ss_pred chhhhhhccCchhhc-----cHhhhcccceeEEEeccch-hh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhh
Confidence 345666666665532 5567777778888887776 33 56777777777777777777777 7777777777777
Q ss_pred EEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCC
Q 035522 159 QLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNN 238 (509)
Q Consensus 159 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 238 (509)
.+++++|.+. ++|+.++.+..|+.++..+|++. ..|..+.++.++..+++.+|++....|..+ +++.|++|+...|.
T Consensus 118 ~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-~m~~L~~ld~~~N~ 194 (565)
T KOG0472|consen 118 KLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHI-AMKRLKHLDCNSNL 194 (565)
T ss_pred hhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHH-HHHHHHhcccchhh
Confidence 7777777776 66667777777777777777776 345556666667777777776663333333 36666666666666
Q ss_pred CCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccc
Q 035522 239 LTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPST 318 (509)
Q Consensus 239 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~ 318 (509)
+. .+|..++.+.+|..|++..|++. ..| .|..+..|+.+.++.|.+.-...+....++++..||+.+|+++ ..|..
T Consensus 195 L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde 270 (565)
T KOG0472|consen 195 LE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDE 270 (565)
T ss_pred hh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchH
Confidence 54 56666666666666666666665 344 4555666666666666555222222335666666666666665 45555
Q ss_pred cCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcC---------------------------------------
Q 035522 319 IGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNL--------------------------------------- 359 (509)
Q Consensus 319 ~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l--------------------------------------- 359 (509)
+.-+.+|++||+|+|.++ ..|..++++ .|+.|.+.||.+
T Consensus 271 ~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~ 348 (565)
T KOG0472|consen 271 ICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAM 348 (565)
T ss_pred HHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccC
Confidence 555666666666666665 344455555 566666655544
Q ss_pred --------------------------CCCCccccCCCC---CCCEEECcCCcCc-----------------------ccC
Q 035522 360 --------------------------IGPIPPTIGYLT---NLTSLNLGYNQLS-----------------------SSI 387 (509)
Q Consensus 360 --------------------------~~~~~~~~~~l~---~L~~L~L~~n~l~-----------------------~~~ 387 (509)
+ .+|....... -....+++.|++. +.+
T Consensus 349 t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv 427 (565)
T KOG0472|consen 349 TLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFV 427 (565)
T ss_pred CCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccc
Confidence 1 1111111111 1345555555554 133
Q ss_pred cccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcccc---
Q 035522 388 PPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVR--- 464 (509)
Q Consensus 388 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~--- 464 (509)
|..++.+++|..|++++|-+. .+|..++.+..|+.|+++.|++. .+|..+..+..++.+-.++|++....|+.+.
T Consensus 428 ~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~ 505 (565)
T KOG0472|consen 428 PLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMR 505 (565)
T ss_pred hHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhh
Confidence 344455667777777777665 56667777777777777777776 6777766666677777777777666665444
Q ss_pred CCCeEecccCccccCCCCCC--CCCCCCCccCcCCCcCC
Q 035522 465 RIPKLIVSENNLELENSTSS--ENAPPPQAKPFKGNKGK 501 (509)
Q Consensus 465 ~l~~L~ls~N~l~~~~~ip~--~~~~~l~~l~l~~N~~l 501 (509)
++..||+.+|.+.. ||+ +.+++++.+.+.|||.-
T Consensus 506 nL~tLDL~nNdlq~---IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 506 NLTTLDLQNNDLQQ---IPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred hcceeccCCCchhh---CChhhccccceeEEEecCCccC
Confidence 45599999999997 998 89999999999999975
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.97 E-value=2.7e-34 Score=277.16 Aligned_cols=366 Identities=27% Similarity=0.361 Sum_probs=316.3
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
.-|+.+++++|.+.|.-. +.....+++++-|.|...+ + ..+|+.++.+.+|++|.+.+|++. .+-..++.++.|
T Consensus 7 pFVrGvDfsgNDFsg~~F---P~~v~qMt~~~WLkLnrt~-L-~~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~L 80 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRF---PHDVEQMTQMTWLKLNRTK-L-EQVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRL 80 (1255)
T ss_pred ceeecccccCCcCCCCcC---chhHHHhhheeEEEechhh-h-hhChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhh
Confidence 457889999999996543 7788889999999998877 3 478999999999999999999987 566678889999
Q ss_pred cEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 158 FQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 158 ~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
+.+++..|++.. -+|..+..+..|..|+|++|++. ..|..+.+-+++-.|++++|+|..+....|.++..|-.|++++
T Consensus 81 Rsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~ 159 (1255)
T KOG0444|consen 81 RSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSN 159 (1255)
T ss_pred HHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhcccc
Confidence 999999998864 37888889999999999999998 6788899999999999999999855445577899999999999
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeeccccccc-CcchhhhcCCCCCCEEECcCCCCCCCC
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT-GPISSTIGYLNLLEILDLSHNRLDGPI 315 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~l~~n~l~~~~ 315 (509)
|++. .+|..+..+..|++|++++|.+....-..+..+++|+.|.+++.+-+ ..+|.++..+.+|..+|++.|.+. ..
T Consensus 160 NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~v 237 (1255)
T KOG0444|consen 160 NRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IV 237 (1255)
T ss_pred chhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cc
Confidence 9987 78889999999999999999887544445566788888888886543 357888889999999999999998 78
Q ss_pred ccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcc-cCcccccCC
Q 035522 316 PSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSS-SIPPELMNC 394 (509)
Q Consensus 316 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~ 394 (509)
|+.+..+++|+.|++|+|+++. +....+...+|++|+++.|+++ .+|..++.++.|+.|.+.+|+++- -+|..++.+
T Consensus 238 Pecly~l~~LrrLNLS~N~ite-L~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL 315 (1255)
T KOG0444|consen 238 PECLYKLRNLRRLNLSGNKITE-LNMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKL 315 (1255)
T ss_pred hHHHhhhhhhheeccCcCceee-eeccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhh
Confidence 9999999999999999999984 4445667789999999999998 789999999999999999998763 478899999
Q ss_pred ccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCc
Q 035522 395 SQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 395 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
.+|+.+...+|.+. ..|+.+..|..|+.|.|+.|++. .+|..+.-++.|+.||+..|.--
T Consensus 316 ~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 316 IQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred hhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCc
Confidence 99999999999986 88999999999999999999988 79999999999999999999644
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.97 E-value=1.5e-34 Score=265.54 Aligned_cols=380 Identities=31% Similarity=0.452 Sum_probs=285.2
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
..++.+++.++.+... ++++..+..++.++.++|+ + .++|..++.+..|+.+++++|.+. .+|+.++.+..|
T Consensus 68 ~~l~vl~~~~n~l~~l-----p~aig~l~~l~~l~vs~n~-l-s~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l 139 (565)
T KOG0472|consen 68 ACLTVLNVHDNKLSQL-----PAAIGELEALKSLNVSHNK-L-SELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDL 139 (565)
T ss_pred cceeEEEeccchhhhC-----CHHHHHHHHHHHhhcccch-H-hhccHHHhhhhhhhhhhcccccee-ecCchHHHHhhh
Confidence 4567788888876643 6778888888999999887 4 468888888999999999999888 778888888889
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
+.++..+|++. ..|..+.++.+|..+++.+|++....|..+. ++.|++++...|.+. .+|..++++.+|..|++..|
T Consensus 140 ~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~N 216 (565)
T KOG0472|consen 140 EDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRN 216 (565)
T ss_pred hhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhc
Confidence 99998888888 7777888888888888888888755555444 778888888777776 66777788888888888888
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchh-ccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKE-VGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (509)
.+. .+| .|..++.|+++++..|.+. .+|.. ...++++..|+++.|+++ .+|+.+..+.+|++||+++|.++ .+|
T Consensus 217 ki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp 291 (565)
T KOG0472|consen 217 KIR-FLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLP 291 (565)
T ss_pred ccc-cCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCC
Confidence 776 445 6677777777777777766 34433 346677777777777776 45666667777777777777776 455
Q ss_pred cccCCCCCcCeeeCccccCCc-----------------------------------------------------------
Q 035522 317 STIGNLTNLTSLVLSSNQLSG----------------------------------------------------------- 337 (509)
Q Consensus 317 ~~~~~l~~L~~L~ls~n~l~~----------------------------------------------------------- 337 (509)
..++++ .|+.|.+.+|.+..
T Consensus 292 ~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s 370 (565)
T KOG0472|consen 292 YSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVS 370 (565)
T ss_pred cccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhccc
Confidence 566666 66666666654420
Q ss_pred -----cCcc-ccc--CCCCCCEEEcCCCcCC-----------------------CCCccccCCCCCCCEEECcCCcCccc
Q 035522 338 -----LLPR-EVG--NLKYLDSRSLDGNNLI-----------------------GPIPPTIGYLTNLTSLNLGYNQLSSS 386 (509)
Q Consensus 338 -----~~~~-~~~--~l~~L~~L~L~~n~l~-----------------------~~~~~~~~~l~~L~~L~L~~n~l~~~ 386 (509)
.+|. .|. .-.-...+++++|++. +.+|..++.+++|..|++++|.+. .
T Consensus 371 ~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~ 449 (565)
T KOG0472|consen 371 DKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-D 449 (565)
T ss_pred ccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-h
Confidence 0111 110 0111345566666553 234556677899999999999988 7
Q ss_pred CcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccC-
Q 035522 387 IPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRR- 465 (509)
Q Consensus 387 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~- 465 (509)
+|..++.+-.|+.|+++.|++. .+|.++..+..++.+-.++|++....|..+..+.+|.+||+.+|.+. .+|..+++
T Consensus 450 LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~Lgnm 527 (565)
T KOG0472|consen 450 LPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNM 527 (565)
T ss_pred cchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhccc
Confidence 8888888888999999999997 78999888889999988999999777777999999999999999997 56656555
Q ss_pred --CCeEecccCccc
Q 035522 466 --IPKLIVSENNLE 477 (509)
Q Consensus 466 --l~~L~ls~N~l~ 477 (509)
++.|++++|+|.
T Consensus 528 tnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 528 TNLRHLELDGNPFR 541 (565)
T ss_pred cceeEEEecCCccC
Confidence 459999999996
No 9
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.95 E-value=8.2e-31 Score=264.00 Aligned_cols=394 Identities=30% Similarity=0.365 Sum_probs=198.5
Q ss_pred EEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcE
Q 035522 80 IVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQ 159 (509)
Q Consensus 80 v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~ 159 (509)
++.|+++++.+.. + +..+..+.+|+.|+++.|. + ...|.+..++.+|+++.|.+|.+. ..|.++..+++|++
T Consensus 47 L~~l~lsnn~~~~-f----p~~it~l~~L~~ln~s~n~-i-~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 47 LKSLDLSNNQISS-F----PIQITLLSHLRQLNLSRNY-I-RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQY 118 (1081)
T ss_pred eEEeecccccccc-C----CchhhhHHHHhhcccchhh-H-hhCchhhhhhhcchhheeccchhh-cCchhHHhhhcccc
Confidence 7788888776654 3 5667778888888888886 3 456777888888888888887776 78888888888888
Q ss_pred EeccCCcCCCcCCccCCCCCCC-------------------CEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCC
Q 035522 160 LDLSINILNGSIPLEIGNLKDL-------------------DYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLP 220 (509)
Q Consensus 160 L~L~~n~~~~~~p~~~~~l~~L-------------------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~ 220 (509)
|++++|.+. .+|..+..+..+ +.+++..|.+.+.++..+..++. .|++.+|.+. ..
T Consensus 119 LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~- 193 (1081)
T KOG0618|consen 119 LDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VL- 193 (1081)
T ss_pred cccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--eeecccchhh-hh-
Confidence 888888876 555444444333 33344444444444444444333 4666666554 11
Q ss_pred cccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCC
Q 035522 221 REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNL 300 (509)
Q Consensus 221 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 300 (509)
.+..+.+|+.+....|.+... --.-++++.|+...|.++...+ -....+|++++++.|.++ .+|++++.+.+
T Consensus 194 -dls~~~~l~~l~c~rn~ls~l----~~~g~~l~~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~n 265 (1081)
T KOG0618|consen 194 -DLSNLANLEVLHCERNQLSEL----EISGPSLTALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACAN 265 (1081)
T ss_pred -hhhhccchhhhhhhhcccceE----EecCcchheeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhccc
Confidence 123333333333333333210 0011223333333333331111 011234444444444444 23344444444
Q ss_pred CCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccc--------------
Q 035522 301 LEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPT-------------- 366 (509)
Q Consensus 301 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-------------- 366 (509)
|+.++..+|.++ .+|..+....+|+.|.+.+|.+. .+|......+.|+.|++..|++. ..|+.
T Consensus 266 le~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~ 342 (1081)
T KOG0618|consen 266 LEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNV 342 (1081)
T ss_pred ceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHHHhhhhHHHHHHhh
Confidence 444444444443 33333333444444444444443 23333333444444444444432 11110
Q ss_pred ------------cCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcC
Q 035522 367 ------------IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 367 ------------~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
-..++.|+.|.+.+|.+++.....+.++++|+.|+|++|++.......+.+++.|++|+|+||+++ .
T Consensus 343 s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~ 421 (1081)
T KOG0618|consen 343 SSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-T 421 (1081)
T ss_pred hhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-h
Confidence 011234455555555555544344455555555555555555333344555555555555555555 4
Q ss_pred ChhhccCCCCCCEEeCcCCcCcccCCc--cccCCCeEecccCccccCCCCCCCCC-CCCCccCcCCCcC
Q 035522 435 IPSQLGNIPNISAVDLSKNNLSGVVPA--SVRRIPKLIVSENNLELENSTSSENA-PPPQAKPFKGNKG 500 (509)
Q Consensus 435 ~p~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~l~~L~ls~N~l~~~~~ip~~~~-~~l~~l~l~~N~~ 500 (509)
+|..+..++.|++|...+|++. .+|+ .+++++.+|+|.|+++.. .+|...- ++|+.+++.||++
T Consensus 422 Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~~lDlS~N~L~~~-~l~~~~p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 422 LPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLKVLDLSCNNLSEV-TLPEALPSPNLKYLDLSGNTR 488 (1081)
T ss_pred hhHHHHhhhhhHHHhhcCCcee-echhhhhcCcceEEecccchhhhh-hhhhhCCCcccceeeccCCcc
Confidence 5555555555555555555554 3332 233444555555555541 2222211 4555555555554
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.94 E-value=2.6e-25 Score=248.20 Aligned_cols=360 Identities=22% Similarity=0.254 Sum_probs=279.2
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCC-----cceeCchhccCCC-CCCEEEccCCcCCccCCccc
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGF-----LSGRIPSEIGALS-KLQVLNLSQNHLTGTIPSEI 151 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-----~~~~~~~~~~~l~-~L~~L~L~~~~l~~~~~~~l 151 (509)
..|+.+.+....... ..+...+|.++++|+.|.+..+.. ....+|..+..++ +|+.|++.++.+. .+|..|
T Consensus 532 ~~v~~i~l~~~~~~~--~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f 608 (1153)
T PLN03210 532 KKVLGITLDIDEIDE--LHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF 608 (1153)
T ss_pred ceeeEEEeccCccce--eeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC
Confidence 456666554433322 112256789999999999976531 2345777777664 5999999998887 778777
Q ss_pred cCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcE
Q 035522 152 GSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILEL 231 (509)
Q Consensus 152 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 231 (509)
...+|+.|++.+|.+. .++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.
T Consensus 609 -~~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~ 685 (1153)
T PLN03210 609 -RPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLED 685 (1153)
T ss_pred -CccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCE
Confidence 5789999999999987 6788888999999999998875556664 888999999999998866688999999999999
Q ss_pred EECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCC
Q 035522 232 LYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRL 311 (509)
Q Consensus 232 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 311 (509)
|++++|.....+|..+ ++++|+.|++++|...+.+|.. ..+|+.|++++|.+. .+|..+ .+++|++|++.++..
T Consensus 686 L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~ 759 (1153)
T PLN03210 686 LDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKS 759 (1153)
T ss_pred EeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccch
Confidence 9999986666777665 7889999999998776666643 468899999999876 455544 578888888877432
Q ss_pred C-------CCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCc
Q 035522 312 D-------GPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLS 384 (509)
Q Consensus 312 ~-------~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 384 (509)
. ...+.....+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|+.|++++|...
T Consensus 760 ~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L 838 (1153)
T PLN03210 760 EKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL 838 (1153)
T ss_pred hhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc
Confidence 1 1112222345789999999998777888889999999999999987666777765 6889999999998766
Q ss_pred ccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCc
Q 035522 385 SSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNN 454 (509)
Q Consensus 385 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~ 454 (509)
..+|.. .++|+.|++++|.+. .+|.++..+++|+.|++++|.-...+|..+..+++|+.+++++|.
T Consensus 839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 555543 367899999999987 678889999999999999976544688788889999999999984
No 11
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.93 E-value=2e-24 Score=241.19 Aligned_cols=337 Identities=22% Similarity=0.261 Sum_probs=270.9
Q ss_pred chhccCCCCCCEEEccCCc------CCccCCccccCCC-CCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCc
Q 035522 124 PSEIGALSKLQVLNLSQNH------LTGTIPSEIGSSR-NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIP 196 (509)
Q Consensus 124 ~~~~~~l~~L~~L~L~~~~------l~~~~~~~l~~l~-~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~ 196 (509)
+.+|..+++|+.|.+..+. +...+|..|..++ +|+.|++.++.+. .+|..| ...+|++|++.++.+. .++
T Consensus 551 ~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~ 627 (1153)
T PLN03210 551 ENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLW 627 (1153)
T ss_pred HHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccc
Confidence 4568899999999996553 3345777777775 5999999999887 778777 5789999999999987 467
Q ss_pred ccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCC
Q 035522 197 SSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKN 276 (509)
Q Consensus 197 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~ 276 (509)
..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+.++++|+.|++++|...+.+|..+ ++++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~s 705 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKS 705 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCC
Confidence 7788999999999998875556674 8889999999999998777899999999999999999987766777655 6899
Q ss_pred cceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCC-------ccCcccccCCCCC
Q 035522 277 LKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLS-------GLLPREVGNLKYL 349 (509)
Q Consensus 277 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~-------~~~~~~~~~l~~L 349 (509)
|+.|++++|.....+|.. .++|+.|++++|.+. .+|..+ .+++|++|.+.++... ...+......++|
T Consensus 706 L~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL 780 (1153)
T PLN03210 706 LYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLWERVQPLTPLMTMLSPSL 780 (1153)
T ss_pred CCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhccccccccchhhhhccccc
Confidence 999999998765555543 468999999999987 566655 5788999988875321 1112223345789
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccC
Q 035522 350 DSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429 (509)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 429 (509)
+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ ++++|+.|++++|.....+|.. .++|++|+|++|
T Consensus 781 ~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n 856 (1153)
T PLN03210 781 TRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDI---STNISDLNLSRT 856 (1153)
T ss_pred hheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcccccccc---ccccCEeECCCC
Confidence 999999998888899999999999999999987665777665 7899999999999766565543 468999999999
Q ss_pred cCCcCChhhccCCCCCCEEeCcCCcCcccCCcc---ccCCCeEecccCc
Q 035522 430 FINGTIPSQLGNIPNISAVDLSKNNLSGVVPAS---VRRIPKLIVSENN 475 (509)
Q Consensus 430 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~---~~~l~~L~ls~N~ 475 (509)
.+. .+|.++..+++|+.|++++|+--..+|.. +..++.+++++|.
T Consensus 857 ~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 857 GIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 998 78999999999999999997544445543 4556688888885
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.93 E-value=1.1e-28 Score=248.83 Aligned_cols=391 Identities=31% Similarity=0.384 Sum_probs=269.5
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
..++.++++.|-+-... .+...+.-+|+.|++++|.. +.+|..+..+.+|+.|+++.|.+. ..|.+..++.+|
T Consensus 21 ~~~~~ln~~~N~~l~~p----l~~~~~~v~L~~l~lsnn~~--~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l 93 (1081)
T KOG0618|consen 21 EALQILNLRRNSLLSRP----LEFVEKRVKLKSLDLSNNQI--SSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNL 93 (1081)
T ss_pred HHHHhhhccccccccCc----hHHhhheeeeEEeecccccc--ccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcc
Confidence 34677777776654432 23334455599999999973 678888999999999999999988 788889999999
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
+++.|.+|.+. ..|..+..+.+|++|+++.|.+. .+|..+..++.++.+..++|.-... ++... ++.+++..|
T Consensus 94 ~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n 166 (1081)
T KOG0618|consen 94 QYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLN 166 (1081)
T ss_pred hhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhh
Confidence 99999999887 88999999999999999999987 5677777777777777777722111 11111 555555555
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCC--------------------CCcceeecccccccCcchhhhcC
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM--------------------KNLKILLLHRNNLTGPISSTIGY 297 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~--------------------~~L~~L~L~~n~~~~~~~~~~~~ 297 (509)
.+.+.++..+..++. .+++++|.+. . ..+..+ ++++.|+...|.++... .-..
T Consensus 167 ~l~~~~~~~i~~l~~--~ldLr~N~~~-~--~dls~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~--~~p~ 239 (1081)
T KOG0618|consen 167 VLGGSFLIDIYNLTH--QLDLRYNEME-V--LDLSNLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLD--VHPV 239 (1081)
T ss_pred hcccchhcchhhhhe--eeecccchhh-h--hhhhhccchhhhhhhhcccceEEecCcchheeeeccCcceeec--cccc
Confidence 555555555444443 4555555554 1 112223 45555555555554211 1123
Q ss_pred CCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEE
Q 035522 298 LNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLN 377 (509)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 377 (509)
..+|+++++++|+++ .+|+|+..+.+|+.+++.+|+++ .+|..+...++|+.|.+..|.+. .+|....++.+|++|+
T Consensus 240 p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLd 316 (1081)
T KOG0618|consen 240 PLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLD 316 (1081)
T ss_pred cccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeee
Confidence 456788888888777 46678888888888888888875 55666667777888888888776 5666777788889999
Q ss_pred CcCCcCcccCccccc--------------------------CCccCceeeeecccCCCcCcccccCCCcCCeEecccCcC
Q 035522 378 LGYNQLSSSIPPELM--------------------------NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFI 431 (509)
Q Consensus 378 L~~n~l~~~~~~~~~--------------------------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 431 (509)
|..|++. .+|..+- .++.|+.|++.+|.+++.....+.+.++|+.|+|++|++
T Consensus 317 L~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL 395 (1081)
T KOG0618|consen 317 LQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRL 395 (1081)
T ss_pred ehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeeccccc
Confidence 9888876 3332110 124567777788887776666677778888888888888
Q ss_pred CcCCh-hhccCCCCCCEEeCcCCcCcccCCccc---cCCCeEecccCccccCCCCCC-CCCCCCCccCcCCC
Q 035522 432 NGTIP-SQLGNIPNISAVDLSKNNLSGVVPASV---RRIPKLIVSENNLELENSTSS-ENAPPPQAKPFKGN 498 (509)
Q Consensus 432 ~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~-~~~~~l~~l~l~~N 498 (509)
. .+| ..+.++..|+.|+||||+++ .+|... ..|..|..-+|++.. .|. .+++.++.++++-|
T Consensus 396 ~-~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~~---fPe~~~l~qL~~lDlS~N 462 (1081)
T KOG0618|consen 396 N-SFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLLS---FPELAQLPQLKVLDLSCN 462 (1081)
T ss_pred c-cCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCceee---chhhhhcCcceEEecccc
Confidence 7 444 45667778888888888876 344443 344477777777776 676 56677777777665
No 13
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.87 E-value=2.5e-24 Score=198.25 Aligned_cols=274 Identities=21% Similarity=0.232 Sum_probs=149.2
Q ss_pred CCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccC-CcCCCcCCccCCCCCCCCEEE
Q 035522 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSI-NILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~ 185 (509)
.-..+.|..|. ++..-+.+|+.+++||.|||++|.|+.+-|++|.+++.|..|-+.+ |+|+......|.++..|+.|.
T Consensus 68 ~tveirLdqN~-I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLl 146 (498)
T KOG4237|consen 68 ETVEIRLDQNQ-ISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLL 146 (498)
T ss_pred cceEEEeccCC-cccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHh
Confidence 44566666666 5544455677777777777777777777777777777766655544 666644344566777777777
Q ss_pred CcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCC------------CCCchhhhCCCCc
Q 035522 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT------------GPIPSTLYHLNPL 253 (509)
Q Consensus 186 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~------------~~~~~~l~~~~~L 253 (509)
+.-|++.-...+.|..++++..|.+.+|.+..+--..|..+..++.+.+..|.+- ...|..++..+..
T Consensus 147 lNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~ 226 (498)
T KOG4237|consen 147 LNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCV 226 (498)
T ss_pred cChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceec
Confidence 7777776666666777777777777777766333335666777777777666522 0111111222111
Q ss_pred ceeecccCcCCCCCchhccCCCCccee--ec-ccccccCcc-hhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeee
Q 035522 254 IEWYLAYNNLVGPLPKEVGNMKNLKIL--LL-HRNNLTGPI-SSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLV 329 (509)
Q Consensus 254 ~~L~l~~n~~~~~~~~~l~~~~~L~~L--~L-~~n~~~~~~-~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 329 (509)
.-..+.+.++...-+..+.. .++.+ .+ +.+...+.. ...|..+++|+.|++++|+++++-+.+|.....+++|.
T Consensus 227 ~p~rl~~~Ri~q~~a~kf~c--~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~ 304 (498)
T KOG4237|consen 227 SPYRLYYKRINQEDARKFLC--SLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELY 304 (498)
T ss_pred chHHHHHHHhcccchhhhhh--hHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhh
Confidence 11222222222111111110 01111 01 111111111 23455566666666666666655555666666666666
Q ss_pred CccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcC
Q 035522 330 LSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQL 383 (509)
Q Consensus 330 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 383 (509)
+..|++.......|.++..|+.|+|++|+++...|..|....+|.+|++-.|.+
T Consensus 305 L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 305 LTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred cCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcc
Confidence 666665544445555666666666666666655555555555666666655543
No 14
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.87 E-value=3e-21 Score=201.07 Aligned_cols=266 Identities=27% Similarity=0.315 Sum_probs=152.1
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
-..|+++.+.++ .+|..+. ++|+.|++.+|+++. +|. ..++|++|++++|+++ .+|.. .++|+.|++++
T Consensus 203 ~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls~ 271 (788)
T PRK15387 203 NAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIFS 271 (788)
T ss_pred CcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeeccC
Confidence 344555555554 3444332 245555555555542 222 1345555555555555 23321 23555555555
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCc
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (509)
|.++ .+|.. ..+|+.|++++|+++. +|. ..++|+.|++++|.+++ +|.. ...|+.|++++|.+++ +|
T Consensus 272 N~L~-~Lp~l---p~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP 338 (788)
T PRK15387 272 NPLT-HLPAL---PSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LP 338 (788)
T ss_pred Cchh-hhhhc---hhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---cccccccccccCcccc-cc
Confidence 5554 22321 1345555555555552 232 13456666666666653 2321 2346666677766653 44
Q ss_pred cccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCcc
Q 035522 317 STIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 396 (509)
Q Consensus 317 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 396 (509)
.. ..+|++|++++|++++ +|.. ..+|+.|++++|.+.. +|.. ..+|+.|++++|.+++ +|.. .++
T Consensus 339 ~l---p~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~ 403 (788)
T PRK15387 339 TL---PSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---PSE 403 (788)
T ss_pred cc---ccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---ccC
Confidence 21 2467777777777663 3332 2456667777777663 4432 2467778888887773 4432 256
Q ss_pred CceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCC
Q 035522 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRI 466 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 466 (509)
|+.|++++|.+.+ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.++
T Consensus 404 L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l 468 (788)
T PRK15387 404 LKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREI 468 (788)
T ss_pred CCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHHHH
Confidence 7888888888774 5543 346777888888887 678888888888888888888888777665433
No 15
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.85 E-value=2.1e-20 Score=194.70 Aligned_cols=266 Identities=28% Similarity=0.331 Sum_probs=210.0
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEec
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL 210 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 210 (509)
..-..|+++++.++ .+|..+. ++|+.|++.+|+++ .+|.. +++|++|++++|+++.. |. ..++|+.|++
T Consensus 201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt-~LP~l---p~~Lk~LdLs~N~LtsL-P~---lp~sL~~L~L 269 (788)
T PRK15387 201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPAL---PPELRTLEVSGNQLTSL-PV---LPPGLLELSI 269 (788)
T ss_pred CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCC-CCCCC---CCCCcEEEecCCccCcc-cC---cccccceeec
Confidence 45778999999998 6787775 48999999999998 56642 57899999999999854 53 2468999999
Q ss_pred cCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCc
Q 035522 211 SLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGP 290 (509)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 290 (509)
++|.+. .+|.. .++|+.|++++|.++ .+|.. .++|+.|++++|.+++ +|.. ..+|+.|++++|.+++
T Consensus 270 s~N~L~-~Lp~l---p~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~- 336 (788)
T PRK15387 270 FSNPLT-HLPAL---PSGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS- 336 (788)
T ss_pred cCCchh-hhhhc---hhhcCEEECcCCccc-ccccc---ccccceeECCCCcccc-CCCC---cccccccccccCcccc-
Confidence 999987 44543 357889999999988 45542 4679999999999985 3432 3468899999999874
Q ss_pred chhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCC
Q 035522 291 ISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL 370 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 370 (509)
+|. ...+|++|++++|.+++ +|.. ..+|+.|++++|.+.+ +|.. ..+|+.|++++|.+.+ +|.. .
T Consensus 337 LP~---lp~~Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~-LP~l---~ 401 (788)
T PRK15387 337 LPT---LPSGLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTS-LPVL---P 401 (788)
T ss_pred ccc---cccccceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---ccccceEEecCCcccC-CCCc---c
Confidence 443 23579999999999984 5543 4678899999999884 5543 3579999999999984 5543 3
Q ss_pred CCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhcc
Q 035522 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLG 440 (509)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 440 (509)
++|+.|++++|++++ +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++++..+..+.
T Consensus 402 s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L~ 466 (788)
T PRK15387 402 SELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALR 466 (788)
T ss_pred cCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCCchHHHHHH
Confidence 689999999999984 5643 356889999999998 6898999999999999999999988887663
No 16
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.85 E-value=1.4e-23 Score=193.21 Aligned_cols=386 Identities=21% Similarity=0.217 Sum_probs=244.1
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccC-CcCCccCCccccCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQ-NHLTGTIPSEIGSSR 155 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~-~~l~~~~~~~l~~l~ 155 (509)
+...+.|+|..|+++... +.+|..+++||.|||+.|. ++..-|++|..++.|..|-+-+ |+|+..-...|+++.
T Consensus 66 P~~tveirLdqN~I~~iP----~~aF~~l~~LRrLdLS~N~-Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~ 140 (498)
T KOG4237|consen 66 PPETVEIRLDQNQISSIP----PGAFKTLHRLRRLDLSKNN-ISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLS 140 (498)
T ss_pred CCcceEEEeccCCcccCC----hhhccchhhhceecccccc-hhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHH
Confidence 457899999999988766 8999999999999999999 8889999999999988887665 899966667899999
Q ss_pred CCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcc------------cCCccc
Q 035522 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSG------------RLPREV 223 (509)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~------------~~~~~l 223 (509)
.|+.|.+.-|++.-.....|..+++|..|.+.+|.+..+--..|..+..++++.+..|.+.. ..|-.+
T Consensus 141 slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 141 SLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 99999999999987778889999999999999998875544478899999999988776321 112222
Q ss_pred CCCCCCcEEECcCCCCCCCCchhhhCC-CCcceeecccCcCCCCCc-hhccCCCCcceeecccccccCcchhhhcCCCCC
Q 035522 224 GNLKILELLYLDSNNLTGPIPSTLYHL-NPLIEWYLAYNNLVGPLP-KEVGNMKNLKILLLHRNNLTGPISSTIGYLNLL 301 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L 301 (509)
+...-..-..+.+.++...-+..+... ..+..-..+.+...+..| ..|..+++|++|++++|++++.-+.+|.+...+
T Consensus 221 sgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l 300 (498)
T KOG4237|consen 221 SGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL 300 (498)
T ss_pred ccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence 222222222223332221111111111 011111111122222333 245666666666666666666666666666666
Q ss_pred CEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCC-----------------CCc
Q 035522 302 EILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIG-----------------PIP 364 (509)
Q Consensus 302 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-----------------~~~ 364 (509)
++|++..|++...-...|.++..|+.|++.+|+++...|..|..+..|.+|++-.|.+.- ..|
T Consensus 301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~ 380 (498)
T KOG4237|consen 301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP 380 (498)
T ss_pred hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence 666666666654444455666666666666666666666666666666666665554311 001
Q ss_pred cccCCCCCCCEEECcCCcCcc---cCcc---------cccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 365 PTIGYLTNLTSLNLGYNQLSS---SIPP---------ELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 365 ~~~~~l~~L~~L~L~~n~l~~---~~~~---------~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
. -.....++.+.+++..+.+ ..|+ .-..|+.+.+..=-.|+....+|..+. ....++++.+|.++
T Consensus 381 ~-Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~ 457 (498)
T KOG4237|consen 381 R-CQSPGFVRQIPISDVAFGDFRCGGPEELGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT 457 (498)
T ss_pred C-CCCCchhccccchhccccccccCCccccCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc
Confidence 1 0122345566666554432 1111 122344454433223333335555443 46678899999998
Q ss_pred cCChhhccCCCCCCEEeCcCCcCcccCCccccCC---CeEecccC
Q 035522 433 GTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRI---PKLIVSEN 474 (509)
Q Consensus 433 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l---~~L~ls~N 474 (509)
.+|.. .+..| .+|+++|+++...-..|+++ ..|-||+|
T Consensus 458 -~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tlilsyn 498 (498)
T KOG4237|consen 458 -SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLILSYN 498 (498)
T ss_pred -ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeEEecC
Confidence 67766 55677 88999998875544445444 47777765
No 17
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.83 E-value=1.1e-19 Score=190.46 Aligned_cols=279 Identities=24% Similarity=0.370 Sum_probs=186.0
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEec
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL 210 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 210 (509)
.+...|+++++.++ .+|..+. ++|+.|++++|.++ .+|..+. .+|++|++++|.++. +|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lts-LP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTS-IPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCcccc-CChhhh--ccccEEEC
Confidence 35677888877777 5565543 56888888888877 5565543 478888888887773 454332 46888888
Q ss_pred cCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCc
Q 035522 211 SLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGP 290 (509)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 290 (509)
++|.+. .+|..+. ++|+.|++++|.++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.++.
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 888877 5565553 47888888888877 4565543 468888888888774 444332 468888888888874
Q ss_pred chhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCC
Q 035522 291 ISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL 370 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 370 (509)
+|..+ .++|+.|++++|.+++ +|..+ +++|+.|++++|+++ .+|..+. +.|+.|++++|.++ .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhh--cCcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 44333 3678888888888874 56554 368889999998887 4555443 58889999999887 4565543
Q ss_pred CCCCEEECcCCcCcccCcccc----cCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCc-CChhhccCCCCC
Q 035522 371 TNLTSLNLGYNQLSSSIPPEL----MNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFING-TIPSQLGNIPNI 445 (509)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~----~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L 445 (509)
..|+.|++++|++. .+|..+ ..++.+..|++.+|.+.. ..+++|+.+ ++.+.+.| .++......+++
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~s~~~~gp~i~~~~~~~~~l 459 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MSSVGYQGPRVLFAMGDFSIV 459 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hhcccccCCcccccccccccc
Confidence 36888999999888 445433 344778889999998862 233444444 34444433 233333344444
Q ss_pred CE
Q 035522 446 SA 447 (509)
Q Consensus 446 ~~ 447 (509)
+.
T Consensus 460 ~~ 461 (754)
T PRK15370 460 RV 461 (754)
T ss_pred cc
Confidence 43
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.79 E-value=6.4e-19 Score=184.89 Aligned_cols=245 Identities=26% Similarity=0.449 Sum_probs=180.0
Q ss_pred CCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeec
Q 035522 203 TKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLL 282 (509)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L 282 (509)
.+...|+++++.++ .+|..+. +.|+.|++++|.++ .+|..+. ++|++|++++|.++ .+|..+. ++|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35678999998888 4666553 57999999999998 5666554 58999999999987 4565443 57999999
Q ss_pred ccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCC
Q 035522 283 HRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGP 362 (509)
Q Consensus 283 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 362 (509)
++|.+. .+|..+. .+|+.|++++|.++ .+|..+. ++|+.|++++|++++ +|..+. ++|+.|++++|.+..
T Consensus 249 s~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~- 318 (754)
T PRK15370 249 SINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTA- 318 (754)
T ss_pred cCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCcccc-
Confidence 999887 4565553 57899999999888 4666543 589999999998874 444332 468888888888874
Q ss_pred CccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCC
Q 035522 363 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNI 442 (509)
Q Consensus 363 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 442 (509)
+|..+ .++|+.|++++|.+++ +|..+. ++|+.|++++|++. .+|..+. ++|++|++++|.+. .+|..+.
T Consensus 319 LP~~l--~~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~LdLs~N~Lt-~LP~~l~-- 387 (754)
T PRK15370 319 LPETL--PPGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITTLDVSRNALT-NLPENLP-- 387 (754)
T ss_pred CCccc--cccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCEEECCCCcCC-CCCHhHH--
Confidence 45433 3678888998888884 565543 67888899888887 4565553 68888889888888 5665554
Q ss_pred CCCCEEeCcCCcCcccCCccc-------cCCCeEecccCcccc
Q 035522 443 PNISAVDLSKNNLSGVVPASV-------RRIPKLIVSENNLEL 478 (509)
Q Consensus 443 ~~L~~L~ls~N~l~~~~~~~~-------~~l~~L~ls~N~l~~ 478 (509)
..|+.|++++|+++ .+|..+ ..+..+++.+|+++.
T Consensus 388 ~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~ 429 (754)
T PRK15370 388 AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE 429 (754)
T ss_pred HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence 36888888888887 445433 334578888888764
No 19
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=3.2e-20 Score=180.64 Aligned_cols=57 Identities=30% Similarity=0.318 Sum_probs=28.0
Q ss_pred EeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCC----CcccccCCCCCCEEeccCCcCc
Q 035522 160 LDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGL----IPSSIGNLTKLTGLNLSLNKLS 216 (509)
Q Consensus 160 L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 216 (509)
|+|..+.+++ ..+..+..+.+|++|+++++.++.. ++..+...+++++++++++.+.
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~ 64 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETG 64 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccC
Confidence 4555555542 2333344455566666666655322 2333444455555555555443
No 20
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.77 E-value=2.7e-20 Score=181.23 Aligned_cols=60 Identities=18% Similarity=0.278 Sum_probs=29.0
Q ss_pred CCCCEEEcCCCcCCC----CCccccCCCCCCCEEECcCCcCccc----CcccccCC-ccCceeeeeccc
Q 035522 347 KYLDSRSLDGNNLIG----PIPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNC-SQLQNLVLSHNT 406 (509)
Q Consensus 347 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~-~~L~~L~L~~n~ 406 (509)
+.|+.|++++|.++. .+...+..+++|+++++++|.++.. +...+... +.|+++++.+|.
T Consensus 250 ~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 250 ISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred CCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 455555555555541 1222333445666666666666532 22222222 455666655553
No 21
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.66 E-value=2.2e-18 Score=141.55 Aligned_cols=155 Identities=38% Similarity=0.606 Sum_probs=88.2
Q ss_pred CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEE
Q 035522 153 SSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELL 232 (509)
Q Consensus 153 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 232 (509)
++.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++.|++. ..|..|+.++.|++|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 3455555566666655 44555556666666666666655 34555666666666666666665 566667777777777
Q ss_pred ECcCCCCCC-CCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCC
Q 035522 233 YLDSNNLTG-PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRL 311 (509)
Q Consensus 233 ~l~~n~l~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l 311 (509)
|+.+|++.. .+|..|+.++.|+.|+++.|.+. .+|..++++++|+.|.++.|.+- .+|..++.++.|++|.+.+|.+
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 776666542 34444555555555555555554 34444555555555555555544 3444555555555555555555
Q ss_pred C
Q 035522 312 D 312 (509)
Q Consensus 312 ~ 312 (509)
+
T Consensus 186 ~ 186 (264)
T KOG0617|consen 186 T 186 (264)
T ss_pred e
Confidence 4
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.63 E-value=4.8e-18 Score=139.52 Aligned_cols=154 Identities=37% Similarity=0.589 Sum_probs=72.4
Q ss_pred CCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEE
Q 035522 274 MKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRS 353 (509)
Q Consensus 274 ~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 353 (509)
+.+++.|.+++|+++ .+|..+..+.+|+.|++.+|+++ .+|..++.+++|+.|+++-|++. ..|..|+.++.|+.|+
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 444555555555554 33334445555555555555554 34444555555555555544443 3444455555555555
Q ss_pred cCCCcCCC-CCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 354 LDGNNLIG-PIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 354 L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
+..|++.. .+|..|..+..|+.|.+++|.+. .+|..++++++|+.|.+.+|.+. .+|..++.+++|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 54444432 23444444444444444444444 44444444444444444444443 33444444444444444444444
No 23
>PLN03150 hypothetical protein; Provisional
Probab=99.55 E-value=1.9e-14 Score=150.65 Aligned_cols=135 Identities=27% Similarity=0.455 Sum_probs=76.1
Q ss_pred cccCchhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCC-----CCCceecCCC-----CCEEEEEcCCCCCcccccccC
Q 035522 29 AVLTASDASSAIQLEREALLNSGWWNSSWATANYTSDHC-----KWMGITCNSA-----GSIVEISSYEMDNNGNAAELS 98 (509)
Q Consensus 29 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c-----~w~gv~c~~~-----~~v~~l~l~~~~~~~~~~~~~ 98 (509)
+..+.++|.+||+.+|.++.++.. .+|.. ++| .|.|+.|... ..++.|+|+++.+.|.+
T Consensus 366 ~~~t~~~~~~aL~~~k~~~~~~~~--~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~i---- 434 (623)
T PLN03150 366 ESKTLLEEVSALQTLKSSLGLPLR--FGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFI---- 434 (623)
T ss_pred ccccCchHHHHHHHHHHhcCCccc--CCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccC----
Confidence 345667889999999998865432 47853 344 7999999521 12555555555555544
Q ss_pred CCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccC
Q 035522 99 QFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEI 175 (509)
Q Consensus 99 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~ 175 (509)
+..+..+++|+.|+|++|. +.|.+|..++.+++|++|+|++|.+.+.+|..++++++|++|+|++|.+++.+|..+
T Consensus 435 p~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l 510 (623)
T PLN03150 435 PNDISKLRHLQSINLSGNS-IRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510 (623)
T ss_pred CHHHhCCCCCCEEECCCCc-ccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHH
Confidence 4444455555555555554 444455445555555555555555554455545555555555555554444444444
No 24
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=5.7e-11 Score=119.05 Aligned_cols=195 Identities=39% Similarity=0.539 Sum_probs=84.0
Q ss_pred EEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCC-CCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 159 QLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLT-KLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 159 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
.+++..+.+... ...+..++.++.|++.+|.++. ++....... +|+.|++++|.+. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~-i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccccC-chhhhcccceeEEecCCccccc-Cccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 355555544211 1123333445555555555542 222333332 5555555555554 23333444555555555555
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCcc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPS 317 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 317 (509)
+++ .++...... ++|+.|++++|.+. .+|........|+++.+++|.+. ..+.
T Consensus 174 ~l~-~l~~~~~~~------------------------~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~ 226 (394)
T COG4886 174 DLS-DLPKLLSNL------------------------SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLS 226 (394)
T ss_pred hhh-hhhhhhhhh------------------------hhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecch
Confidence 544 223322233 44444444444443 22222223333444444444322 2223
Q ss_pred ccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCccc
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSS 386 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 386 (509)
.+..+.++..+.+.+|++.. .+..++.++.+++|++++|.++.. +. +..+.+++.|++++|.+...
T Consensus 227 ~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~ 292 (394)
T COG4886 227 SLSNLKNLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNA 292 (394)
T ss_pred hhhhcccccccccCCceeee-ccchhccccccceecccccccccc-cc-ccccCccCEEeccCcccccc
Confidence 34444444444444444432 133344444555555555554422 21 44445555555555555433
No 25
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.21 E-value=3.4e-11 Score=120.66 Aligned_cols=197 Identities=41% Similarity=0.553 Sum_probs=123.3
Q ss_pred EEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCC-CCCEEECcCCCCCCCCcccccCCCCCCEEeccCC
Q 035522 135 VLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLK-DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN 213 (509)
Q Consensus 135 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (509)
.+++..+.+. .....+..++.++.|++.+|.++ .++.....+. +|+.|++++|++. .+|..+..+++|+.|++++|
T Consensus 97 ~l~~~~~~~~-~~~~~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N 173 (394)
T COG4886 97 SLDLNLNRLR-SNISELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFN 173 (394)
T ss_pred eeeccccccc-cCchhhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCc
Confidence 4666666653 22233444567777777777777 5555555553 7778888777776 33445677788888888888
Q ss_pred cCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchh
Q 035522 214 KLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISS 293 (509)
Q Consensus 214 ~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~ 293 (509)
++. .+|......++|+.|++++|.+. .+|........|+++.+++|... ..+..+.++.++..+.+.+|.+.. .+.
T Consensus 174 ~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~ 249 (394)
T COG4886 174 DLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPE 249 (394)
T ss_pred hhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccc
Confidence 777 44544446777888888888777 55555555556777777777432 233445666666666666666552 244
Q ss_pred hhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCc
Q 035522 294 TIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLP 340 (509)
Q Consensus 294 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 340 (509)
.++.++.++.|++++|.++.. +. +....+++.|+++++.+....+
T Consensus 250 ~~~~l~~l~~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 250 SIGNLSNLETLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred hhccccccceecccccccccc-cc-ccccCccCEEeccCccccccch
Confidence 556666666666666666633 22 5566666666666666654433
No 26
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.20 E-value=5.7e-13 Score=129.32 Aligned_cols=194 Identities=30% Similarity=0.478 Sum_probs=137.7
Q ss_pred CCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeC
Q 035522 251 NPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVL 330 (509)
Q Consensus 251 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 330 (509)
..-...+++.|++. .+|..+..+..|+.+.+..|.+. .+|..+..+..|+++|++.|+++ .+|..++.++ |+.|.+
T Consensus 75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEE
Confidence 33455677777776 56666666777788888777776 56777777888888888888776 5666666554 777888
Q ss_pred ccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCc
Q 035522 331 SSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 410 (509)
Q Consensus 331 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 410 (509)
++|+++ .+|..++....|..|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|.+||++.|++. .
T Consensus 151 sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNkis-~ 225 (722)
T KOG0532|consen 151 SNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKIS-Y 225 (722)
T ss_pred ecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCcee-e
Confidence 888776 56666777777888888888776 56677777778888888888877 556566643 3777888888877 6
Q ss_pred CcccccCCCcCCeEecccCcCCcCChhhcc---CCCCCCEEeCcCCc
Q 035522 411 FPSEIGNLTHLRQLDLSHNFINGTIPSQLG---NIPNISAVDLSKNN 454 (509)
Q Consensus 411 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~---~l~~L~~L~ls~N~ 454 (509)
+|.+|.+++.|++|-|.+|.+. .-|..+. ...-.++|+..-|+
T Consensus 226 iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 226 LPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred cchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence 7777888888888888888877 4454442 33445667776664
No 27
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.19 E-value=2.9e-12 Score=120.80 Aligned_cols=206 Identities=24% Similarity=0.244 Sum_probs=111.3
Q ss_pred CCCCcceeecccccccCcch-hhhcCCCCCCEEECcCCCCCCC--CccccCCCCCcCeeeCccccCCccCccc-ccCCCC
Q 035522 273 NMKNLKILLLHRNNLTGPIS-STIGYLNLLEILDLSHNRLDGP--IPSTIGNLTNLTSLVLSSNQLSGLLPRE-VGNLKY 348 (509)
Q Consensus 273 ~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~-~~~l~~ 348 (509)
++.+|+.+.|.++.+..... .....++.++.||+++|-+... +......+|+|+.|+++.|++....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 45667777777766542211 2455677777777777765532 1223445677777777777665322111 124566
Q ss_pred CCEEEcCCCcCCC-CCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcC-cccccCCCcCCeEec
Q 035522 349 LDSRSLDGNNLIG-PIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF-PSEIGNLTHLRQLDL 426 (509)
Q Consensus 349 L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L 426 (509)
|+.|.++.|.++. .+......+|+|+.|.+..|............+..|+.|+|++|++...- -...+.++.|..|++
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnl 278 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNL 278 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhc
Confidence 6777777776652 12233445677777777766422222233334556677777777665321 134556667777777
Q ss_pred ccCcCCcC-Chhh-----ccCCCCCCEEeCcCCcCccc--CC--ccccCCCeEecccCcccc
Q 035522 427 SHNFINGT-IPSQ-----LGNIPNISAVDLSKNNLSGV--VP--ASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 427 ~~n~l~~~-~p~~-----~~~l~~L~~L~ls~N~l~~~--~~--~~~~~l~~L~ls~N~l~~ 478 (509)
+.+.+.+. +|+. ...+++|++|+++.|++... +- ..+.+++.|.+..|.++.
T Consensus 279 s~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 279 SSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNK 340 (505)
T ss_pred cccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccccccc
Confidence 77666532 2222 23456667777776666421 11 123344455555555554
No 28
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.18 E-value=7.5e-13 Score=128.50 Aligned_cols=195 Identities=31% Similarity=0.488 Sum_probs=153.2
Q ss_pred CCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCE
Q 035522 104 CFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDY 183 (509)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 183 (509)
.+.--...|++.|+ + .++|..+..+..|+.+.+..|.+. .+|..++++..|.+|+|+.|+++ .+|..+..++ |+.
T Consensus 73 ~ltdt~~aDlsrNR-~-~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 73 DLTDTVFADLSRNR-F-SELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKV 147 (722)
T ss_pred cccchhhhhccccc-c-ccCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-cee
Confidence 34445667888887 3 467888888888888888888888 78888889999999999999888 7777777766 888
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcC
Q 035522 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNL 263 (509)
Q Consensus 184 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~ 263 (509)
|-+++|+++ .+|..++.++.|.+|+.+.|.+. .+|..++++.+|+.|.+..|++. .+|..+..+ .|.+||++.|++
T Consensus 148 li~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfScNki 223 (722)
T KOG0532|consen 148 LIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSCNKI 223 (722)
T ss_pred EEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeecccCce
Confidence 889988887 56777888888999999999887 56777888899999999988887 567777755 488899999888
Q ss_pred CCCCchhccCCCCcceeecccccccCcchhhh---cCCCCCCEEECcCC
Q 035522 264 VGPLPKEVGNMKNLKILLLHRNNLTGPISSTI---GYLNLLEILDLSHN 309 (509)
Q Consensus 264 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L~l~~n 309 (509)
. .+|-.|.+|+.|++|.|.+|.+... |..+ +...-.++|+...|
T Consensus 224 s-~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~ 270 (722)
T KOG0532|consen 224 S-YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC 270 (722)
T ss_pred e-ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence 7 6788888999999999999988743 3222 22333456666655
No 29
>PLN03150 hypothetical protein; Provisional
Probab=99.18 E-value=3.7e-11 Score=126.10 Aligned_cols=107 Identities=30% Similarity=0.475 Sum_probs=64.6
Q ss_pred CceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcccc---CCCeEeccc
Q 035522 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVR---RIPKLIVSE 473 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l~~L~ls~ 473 (509)
++.|+|++|.+.+.+|..+..+++|+.|+|++|.+.|.+|..+..+++|+.|++++|+++|.+|+.+. +|+.|++++
T Consensus 420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~ 499 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG 499 (623)
T ss_pred EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence 45566666666666666666666666666666666666666666666666666666666666665433 344666666
Q ss_pred CccccCCCCCC---CCCCCCCccCcCCCcCCCCcc
Q 035522 474 NNLELENSTSS---ENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 474 N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~ 505 (509)
|+++| .+|. ..+..+..+++.+|+++|+.+
T Consensus 500 N~l~g--~iP~~l~~~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 500 NSLSG--RVPAALGGRLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred Ccccc--cCChHHhhccccCceEEecCCccccCCC
Confidence 66666 5665 222344556667777777653
No 30
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.17 E-value=2.4e-12 Score=118.10 Aligned_cols=134 Identities=19% Similarity=0.250 Sum_probs=71.6
Q ss_pred CCCcCeeeCccccCCcc----CcccccCCCCCCEEEcCCCcCCCC----CccccCCCCCCCEEECcCCcCccc----Ccc
Q 035522 322 LTNLTSLVLSSNQLSGL----LPREVGNLKYLDSRSLDGNNLIGP----IPPTIGYLTNLTSLNLGYNQLSSS----IPP 389 (509)
Q Consensus 322 l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~ 389 (509)
-+.|+.+...+|++... +...|...+.|+.+.+..|.+... +...+..+++|+.|||.+|.++.. +..
T Consensus 156 ~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Lak 235 (382)
T KOG1909|consen 156 KPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAK 235 (382)
T ss_pred CcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHH
Confidence 34555555555554422 222344445566666655554321 123345566666666666666531 233
Q ss_pred cccCCccCceeeeecccCCCcCcccc-----cCCCcCCeEecccCcCCcC----ChhhccCCCCCCEEeCcCCcC
Q 035522 390 ELMNCSQLQNLVLSHNTLSGIFPSEI-----GNLTHLRQLDLSHNFINGT----IPSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 390 ~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l 455 (509)
.++.+++|+.|++++|.+...-...| ...++|+.|.+.+|.|+.. +...+...+.|+.|+|++|.+
T Consensus 236 aL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 236 ALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred HhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 44555666666666666653322211 1256777777777776632 223344566777777777777
No 31
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.15 E-value=7.7e-12 Score=112.36 Aligned_cols=126 Identities=24% Similarity=0.329 Sum_probs=59.5
Q ss_pred CCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeC
Q 035522 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDL 450 (509)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 450 (509)
..|+++|+++|.|+ .+.++..-.|.++.|++++|.+... ..+..+++|+.|||++|.++ .+..+-..+-+.++|.+
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 34555555555555 3334444445555555555555421 22445555555555555554 33333344455555555
Q ss_pred cCCcCccc-CCccccCCCeEecccCccccCCCCCC-CCCCCCCccCcCCCcC
Q 035522 451 SKNNLSGV-VPASVRRIPKLIVSENNLELENSTSS-ENAPPPQAKPFKGNKG 500 (509)
Q Consensus 451 s~N~l~~~-~~~~~~~l~~L~ls~N~l~~~~~ip~-~~~~~l~~l~l~~N~~ 500 (509)
++|.|... ....+-++.+||+++|+|...+.+-. +.+|.++.+++.+||.
T Consensus 360 a~N~iE~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCc
Confidence 55554321 11223334455555555544222222 4555555555555553
No 32
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.13 E-value=6.2e-12 Score=115.44 Aligned_cols=246 Identities=22% Similarity=0.196 Sum_probs=130.8
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcce----eCchh-------ccCCCCCCEEEccCCcCCc
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSG----RIPSE-------IGALSKLQVLNLSQNHLTG 145 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~-------~~~l~~L~~L~L~~~~l~~ 145 (509)
...++.++++++.+...-+..+...+...++|+..++++- ++| ++|++ +..+++|++|+||+|.+..
T Consensus 29 ~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~--ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 29 MDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM--FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh--hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 4567888888888765443334556777778888887764 344 33433 3456678888888877764
Q ss_pred cCCccc----cCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCccc---
Q 035522 146 TIPSEI----GSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGR--- 218 (509)
Q Consensus 146 ~~~~~l----~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~--- 218 (509)
..+..| ..+..|++|.|.+|.+...--..++. -|.+|. .......-++|+++....|++...
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~---------~~kk~~~~~~Lrv~i~~rNrlen~ga~ 175 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA---------VNKKAASKPKLRVFICGRNRLENGGAT 175 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH---------HHhccCCCcceEEEEeeccccccccHH
Confidence 444433 45677777777777654211111100 000000 000112224455555555544321
Q ss_pred -CCcccCCCCCCcEEECcCCCCCCC----CchhhhCCCCcceeecccCcCCCC----CchhccCCCCcceeecccccccC
Q 035522 219 -LPREVGNLKILELLYLDSNNLTGP----IPSTLYHLNPLIEWYLAYNNLVGP----LPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 219 -~~~~l~~l~~L~~L~l~~n~l~~~----~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
+...|...+.|+.+.+..|.+... +...+..+++|+.|++..|.++.. +...+..+++|+.|++++|.+..
T Consensus 176 ~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 176 ALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 112233445555555555544311 122345556666666666655432 22344556677777777776653
Q ss_pred cchhhh-----cCCCCCCEEECcCCCCCCC----CccccCCCCCcCeeeCccccC
Q 035522 290 PISSTI-----GYLNLLEILDLSHNRLDGP----IPSTIGNLTNLTSLVLSSNQL 335 (509)
Q Consensus 290 ~~~~~~-----~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l 335 (509)
.-...+ ...|+|+.+.+.+|.++.. +...+...+.|+.|++++|++
T Consensus 256 ~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 EGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 322222 2357777777777776532 222334467778888888877
No 33
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.13 E-value=4.1e-11 Score=128.49 Aligned_cols=130 Identities=28% Similarity=0.329 Sum_probs=84.9
Q ss_pred CCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCc--CCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 105 FPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH--LTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~--l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
....|...+-++.+ ..++.. ..++.|+.|-+..|. +.......|..++.|++|||++|.--+.+|..++++.+|+
T Consensus 522 ~~~~rr~s~~~~~~--~~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 522 WNSVRRMSLMNNKI--EHIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred hhheeEEEEeccch--hhccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 34556666655541 122222 233467777777765 4433344466778888888887766667787788888888
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCC
Q 035522 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNN 238 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 238 (509)
+|+++++.+. .+|..+.++.+|.+|++..+.-...+|.....+++|++|.+....
T Consensus 599 yL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~ 653 (889)
T KOG4658|consen 599 YLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA 653 (889)
T ss_pred cccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence 8888877777 567777888888888877766444445556667778887776554
No 34
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.12 E-value=4.6e-11 Score=128.09 Aligned_cols=151 Identities=30% Similarity=0.283 Sum_probs=105.4
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCC-cceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGF-LSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..+++..+.++.+... ..-..++.|++|-+.+|.. +.......|..++.|++|||++|.--+.+|..++++-+
T Consensus 523 ~~~rr~s~~~~~~~~~------~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~ 596 (889)
T KOG4658|consen 523 NSVRRMSLMNNKIEHI------AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVH 596 (889)
T ss_pred hheeEEEEeccchhhc------cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhh
Confidence 4556666666654432 1223445788888888751 22222334778999999999988766789999999999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCc--ccCCcccCCCCCCcEEEC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS--GRLPREVGNLKILELLYL 234 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~l 234 (509)
||+|+++++.+. .+|..+.++..|.+|++..+.....+|.....+++|++|.+...... ...-..+.++++|+.+..
T Consensus 597 LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~ 675 (889)
T KOG4658|consen 597 LRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSI 675 (889)
T ss_pred hhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhhee
Confidence 999999999988 88999999999999999888755555666677999999988765421 122233445555555554
Q ss_pred c
Q 035522 235 D 235 (509)
Q Consensus 235 ~ 235 (509)
.
T Consensus 676 ~ 676 (889)
T KOG4658|consen 676 T 676 (889)
T ss_pred e
Confidence 3
No 35
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=99.06 E-value=2.7e-11 Score=108.87 Aligned_cols=131 Identities=27% Similarity=0.325 Sum_probs=84.0
Q ss_pred CCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceee
Q 035522 322 LTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401 (509)
Q Consensus 322 l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 401 (509)
...|+++++|+|.++ .+.....-.|.++.|+++.|.+... ..+..+++|+.||+++|.++ .+..+-..+-+.++|.
T Consensus 283 Wq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~ 358 (490)
T KOG1259|consen 283 WQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLK 358 (490)
T ss_pred Hhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhH-hhhhhHhhhcCEeeee
Confidence 355677777777666 3444555566777777777776532 23566777777777777776 3333334556677777
Q ss_pred eecccCCCcCcccccCCCcCCeEecccCcCCcCC-hhhccCCCCCCEEeCcCCcCccc
Q 035522 402 LSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTI-PSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 402 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
+++|.+... ..+..+-+|..||+++|+|.... -..++++|.|+++.+.+|++.+.
T Consensus 359 La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~ 414 (490)
T KOG1259|consen 359 LAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGS 414 (490)
T ss_pred hhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcccc
Confidence 777776532 34566667777777777776332 24567777777777777777654
No 36
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.5e-11 Score=112.89 Aligned_cols=209 Identities=25% Similarity=0.250 Sum_probs=102.6
Q ss_pred CCCCCCcEEECcCCCCCCCCc-hhhhCCCCcceeecccCcCCCCCc--hhccCCCCcceeecccccccCcchhh-hcCCC
Q 035522 224 GNLKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGPLP--KEVGNMKNLKILLLHRNNLTGPISST-IGYLN 299 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~L~~n~~~~~~~~~-~~~~~ 299 (509)
.++++|+++.+.++.+..... .....+++++.|+++.|-+..-.+ .....+++|+.|+++.|.+....... -..++
T Consensus 118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 466788888888877652211 345567777777777776653211 23345667777777776654221111 12345
Q ss_pred CCCEEECcCCCCCCC-CccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCC-ccccCCCCCCCEEE
Q 035522 300 LLEILDLSHNRLDGP-IPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPI-PPTIGYLTNLTSLN 377 (509)
Q Consensus 300 ~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~ 377 (509)
.|+.|.++.|.++.. +......+|+|+.|++.+|..-.........+..|+.|+|++|++.... -.....++.|..|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence 566666666655521 1122334566666666666321121222233455566666665554211 12234455555666
Q ss_pred CcCCcCccc-Cccc-----ccCCccCceeeeecccCCCc-CcccccCCCcCCeEecccCcCC
Q 035522 378 LGYNQLSSS-IPPE-----LMNCSQLQNLVLSHNTLSGI-FPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 378 L~~n~l~~~-~~~~-----~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
++.+.+... .|+. ...+++|+.|++..|++.+- .-..+..+++|+.|.+..|.+.
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln 339 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLN 339 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccc
Confidence 665555532 1111 12344555555555555311 0012233444444554455443
No 37
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.98 E-value=4.8e-10 Score=96.68 Aligned_cols=124 Identities=29% Similarity=0.365 Sum_probs=30.4
Q ss_pred CCCCCEEECcCCCCCCCCccccc-CCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhh-hCCCCcce
Q 035522 178 LKDLDYLMLQGNKLDGLIPSSIG-NLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTL-YHLNPLIE 255 (509)
Q Consensus 178 l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-~~~~~L~~ 255 (509)
..++++|+|++|.++.+ +.++ .+.+|+.|++++|.++. ++ .+..++.|++|++++|.++. +.+.+ ..+++|++
T Consensus 18 ~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~ 92 (175)
T PF14580_consen 18 PVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQE 92 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S--CHHHHHH-TT--E
T ss_pred ccccccccccccccccc--cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCc-cccchHHhCCcCCE
Confidence 33445555555554432 2233 34455555555555542 21 34445555555555555542 22222 23445555
Q ss_pred eecccCcCCCCC-chhccCCCCcceeecccccccCcc---hhhhcCCCCCCEEEC
Q 035522 256 WYLAYNNLVGPL-PKEVGNMKNLKILLLHRNNLTGPI---SSTIGYLNLLEILDL 306 (509)
Q Consensus 256 L~l~~n~~~~~~-~~~l~~~~~L~~L~L~~n~~~~~~---~~~~~~~~~L~~L~l 306 (509)
|++++|++...- -..+..+++|+.|++.+|.++..- ...+..+|+|+.||-
T Consensus 93 L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 93 LYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred EECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence 555555543211 123444556666666666554221 122344555555544
No 38
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.96 E-value=4.4e-10 Score=96.90 Aligned_cols=110 Identities=30% Similarity=0.352 Sum_probs=33.3
Q ss_pred ccCCCCCCEEEccCCcCCccCCcccc-CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 035522 127 IGALSKLQVLNLSQNHLTGTIPSEIG-SSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL 205 (509)
Q Consensus 127 ~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 205 (509)
+.+..++++|+|++|.++. + ..++ .+.+|+.|++++|.++. +. .+..+++|++|++++|+++...+.....+++|
T Consensus 15 ~~n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 15 YNNPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp -----------------------S--TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred ccccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 3445567888888887773 2 2354 46778888888887773 32 46667778888888887775432222357777
Q ss_pred CEEeccCCcCcccC-CcccCCCCCCcEEECcCCCCC
Q 035522 206 TGLNLSLNKLSGRL-PREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 206 ~~L~l~~n~l~~~~-~~~l~~l~~L~~L~l~~n~l~ 240 (509)
++|++++|++...- -..+..+++|++|++.+|.++
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~ 126 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVC 126 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGG
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCccc
Confidence 77777777775321 133456667777777776655
No 39
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.89 E-value=1.7e-10 Score=115.82 Aligned_cols=243 Identities=28% Similarity=0.279 Sum_probs=129.4
Q ss_pred CCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCccee
Q 035522 177 NLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEW 256 (509)
Q Consensus 177 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L 256 (509)
.+..++.+.++.|.+.. +-..+..+++|+.+++.+|.+... ...+..+++|++|++++|.++.. ..+..++.|+.|
T Consensus 70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L 145 (414)
T KOG0531|consen 70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL 145 (414)
T ss_pred HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence 45566666777776664 223466777888888888877633 32266677788888888877643 345556667777
Q ss_pred ecccCcCCCCCchhccCCCCcceeecccccccCcch-hhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccC
Q 035522 257 YLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPIS-STIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQL 335 (509)
Q Consensus 257 ~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l 335 (509)
++.+|.++.. ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+... ..+..+..+..+++..|.+
T Consensus 146 ~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i 220 (414)
T KOG0531|consen 146 NLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREI--EGLDLLKKLVLLSLLDNKI 220 (414)
T ss_pred eeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhcc--cchHHHHHHHHhhcccccc
Confidence 7777776643 234446667777777776653322 1 34556666666666665422 2233344444445556655
Q ss_pred CccCcccccCCCC--CCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCc---
Q 035522 336 SGLLPREVGNLKY--LDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI--- 410 (509)
Q Consensus 336 ~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~--- 410 (509)
+...+ +..+.. |+.+++.+|.+.. .+..+..+..+..+++.+|++... ..+.....+..+....+.+...
T Consensus 221 ~~~~~--l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 295 (414)
T KOG0531|consen 221 SKLEG--LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAI 295 (414)
T ss_pred eeccC--cccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhh
Confidence 42211 112222 5566666665542 223344455555556655555532 1122333444444444443311
Q ss_pred Ccc-cccCCCcCCeEecccCcCCc
Q 035522 411 FPS-EIGNLTHLRQLDLSHNFING 433 (509)
Q Consensus 411 ~~~-~~~~l~~L~~L~L~~n~l~~ 433 (509)
... .....+.++.+.+..|.+..
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 296 SQEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred hccccccccccccccccccCcccc
Confidence 011 12334455555555555543
No 40
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.87 E-value=4.1e-10 Score=113.11 Aligned_cols=128 Identities=34% Similarity=0.336 Sum_probs=64.1
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 130 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
+..++.++++.|.+. .+-..+..+.+|+.|++.+|.+.. +...+..+++|++|++++|.|+.. ..+..++.|+.|+
T Consensus 71 l~~l~~l~l~~n~i~-~~~~~l~~~~~l~~l~l~~n~i~~-i~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~ 146 (414)
T KOG0531|consen 71 LTSLKELNLRQNLIA-KILNHLSKLKSLEALDLYDNKIEK-IENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELN 146 (414)
T ss_pred hHhHHhhccchhhhh-hhhcccccccceeeeeccccchhh-cccchhhhhcchheeccccccccc--cchhhccchhhhe
Confidence 344444445555444 222334455556666666665552 222244555666666666665544 3345555566666
Q ss_pred ccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCc-hhhhCCCCcceeecccCcCC
Q 035522 210 LSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLV 264 (509)
Q Consensus 210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~ 264 (509)
+.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus 147 l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 147 LSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR 199 (414)
T ss_pred eccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence 666665522 234445566666666665553221 1 344455555555555544
No 41
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.77 E-value=4.1e-09 Score=74.61 Aligned_cols=60 Identities=43% Similarity=0.661 Sum_probs=36.1
Q ss_pred cCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcC
Q 035522 396 QLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 396 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l 455 (509)
+|++|++++|++....+..|..+++|++|++++|.+....+..|..+++|++|++++|+|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 455666666666544445566666666666666666655555666666666666666653
No 42
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.70 E-value=1e-08 Score=72.58 Aligned_cols=61 Identities=43% Similarity=0.586 Sum_probs=46.5
Q ss_pred CCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcC
Q 035522 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFI 431 (509)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 431 (509)
|+|++|++++|++....+..|..+++|++|++++|.+....+..|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677788888877766666777788888888888888766667778888888888888764
No 43
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.58 E-value=1.5e-09 Score=108.84 Aligned_cols=181 Identities=22% Similarity=0.251 Sum_probs=128.3
Q ss_pred ccccCCCCCcCeeeCccccCCccCcccccC-CCCCCEEEcCCCcCC----------CCCccccCCCCCCCEEECcCCcCc
Q 035522 316 PSTIGNLTNLTSLVLSSNQLSGLLPREVGN-LKYLDSRSLDGNNLI----------GPIPPTIGYLTNLTSLNLGYNQLS 384 (509)
Q Consensus 316 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~L~~n~l~----------~~~~~~~~~l~~L~~L~L~~n~l~ 384 (509)
|-.+..+.+|+.|.+.++.+... ..+.. -..|+.|...+- +. |.+...+ ....|...+.++|.+.
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~S-l~Al~~v~ascggd~~ns~-~Wn~L~~a~fsyN~L~ 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHNS-LDALRHVFASCGGDISNSP-VWNKLATASFSYNRLV 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhcc-HHHHHHHHHHhccccccch-hhhhHhhhhcchhhHH
Confidence 55666788999999999988642 11111 123444433221 10 1111111 1236788889999988
Q ss_pred ccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChh-hccCCCCCCEEeCcCCcCccc-CCcc
Q 035522 385 SSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPS-QLGNIPNISAVDLSKNNLSGV-VPAS 462 (509)
Q Consensus 385 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~-~~~~ 462 (509)
....++.-++.++.|+|++|++.+. ..+..++.|++|||+.|.+. .+|. ....+. |+.|++++|.++.. .-+.
T Consensus 178 -~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~lrnN~l~tL~gie~ 252 (1096)
T KOG1859|consen 178 -LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNLRNNALTTLRGIEN 252 (1096)
T ss_pred -hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhhh-heeeeecccHHHhhhhHHh
Confidence 6667788889999999999999854 37888999999999999998 5553 334454 99999999988754 3356
Q ss_pred ccCCCeEecccCccccCCCCCC-CCCCCCCccCcCCCcCCCCcc
Q 035522 463 VRRIPKLIVSENNLELENSTSS-ENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 463 ~~~l~~L~ls~N~l~~~~~ip~-~~~~~l~~l~l~~N~~lc~~~ 505 (509)
+.+|..||+++|-+++-.++-+ ..+..|..+.+.|||..|.+-
T Consensus 253 LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~p~ 296 (1096)
T KOG1859|consen 253 LKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCAPW 296 (1096)
T ss_pred hhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccCHH
Confidence 7888899999999987333333 566778889999999999864
No 44
>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.
Probab=98.43 E-value=2.9e-07 Score=59.53 Aligned_cols=40 Identities=33% Similarity=0.614 Sum_probs=29.4
Q ss_pred hhHHHHHHHHHHhccC-CCCCCCCCCCCCC-CCCCCCCCceecC
Q 035522 34 SDASSAIQLEREALLN-SGWWNSSWATANY-TSDHCKWMGITCN 75 (509)
Q Consensus 34 ~~~~~~l~~~~~~~~~-~~~~~~~w~~~~~-~~~~c~w~gv~c~ 75 (509)
++|++||+++|+++.+ +.+.+.+|.. . ..++|.|.||+|+
T Consensus 2 ~~d~~aLl~~k~~l~~~~~~~l~~W~~--~~~~~~C~W~GV~Cd 43 (43)
T PF08263_consen 2 NQDRQALLAFKKSLNNDPSGVLSSWNP--SSDSDPCSWSGVTCD 43 (43)
T ss_dssp HHHHHHHHHHHHCTT-SC-CCCTT--T--T--S-CCCSTTEEE-
T ss_pred cHHHHHHHHHHHhcccccCcccccCCC--cCCCCCeeeccEEeC
Confidence 5789999999999984 5678999986 2 2799999999995
No 45
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=7.1e-09 Score=93.52 Aligned_cols=177 Identities=20% Similarity=0.120 Sum_probs=96.9
Q ss_pred CCCEEECcCCCCCCC-CcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCC-CCCC-CchhhhCCCCccee
Q 035522 180 DLDYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNN-LTGP-IPSTLYHLNPLIEW 256 (509)
Q Consensus 180 ~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~-l~~~-~~~~l~~~~~L~~L 256 (509)
.|+++||+...++.. +...++.+.+|+.|.+.++++...+...+++-.+|+.|+++.+. ++.. ..--+..++.|.+|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 366666665555421 11224555666666666666665555555566666666666543 2211 11124456666666
Q ss_pred ecccCcCCCCCchhc--cCCCCcceeecccccc---cCcchhhhcCCCCCCEEECcCCC-CCCCCccccCCCCCcCeeeC
Q 035522 257 YLAYNNLVGPLPKEV--GNMKNLKILLLHRNNL---TGPISSTIGYLNLLEILDLSHNR-LDGPIPSTIGNLTNLTSLVL 330 (509)
Q Consensus 257 ~l~~n~~~~~~~~~l--~~~~~L~~L~L~~n~~---~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l 330 (509)
.++.+.........+ .--++|+.|+++++.- ...+..-...+|+|.+||+++|. ++......|..++.|++|.+
T Consensus 266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSl 345 (419)
T KOG2120|consen 266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSL 345 (419)
T ss_pred CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeeh
Confidence 666665543221111 1125677777776532 11223334567888888888763 33333344566778888888
Q ss_pred ccccCCccCcc---cccCCCCCCEEEcCCCc
Q 035522 331 SSNQLSGLLPR---EVGNLKYLDSRSLDGNN 358 (509)
Q Consensus 331 s~n~l~~~~~~---~~~~l~~L~~L~L~~n~ 358 (509)
+.|.. .+|. .+...+.|.+|++.++-
T Consensus 346 sRCY~--i~p~~~~~l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 346 SRCYD--IIPETLLELNSKPSLVYLDVFGCV 374 (419)
T ss_pred hhhcC--CChHHeeeeccCcceEEEEecccc
Confidence 87742 3343 24567788888877653
No 46
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.32 E-value=9.4e-09 Score=103.19 Aligned_cols=125 Identities=32% Similarity=0.351 Sum_probs=62.4
Q ss_pred CcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcc-cccCCCCCCEEEc
Q 035522 276 NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPR-EVGNLKYLDSRSL 354 (509)
Q Consensus 276 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L 354 (509)
.|...+.++|.++ .+..++.-++.++.|++++|+++.. +.+..++.|++|||++|.+.. +|. ....+. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence 3444555555554 3344455555566666666655532 245555666666666665552 222 112222 556666
Q ss_pred CCCcCCCCCccccCCCCCCCEEECcCCcCccc-CcccccCCccCceeeeecccC
Q 035522 355 DGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSS-IPPELMNCSQLQNLVLSHNTL 407 (509)
Q Consensus 355 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~L~~n~l 407 (509)
.+|.++.. ..+.++.+|+.||+++|-+.+. --..++.+..|+.|+|.+|.+
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL 291 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence 66655421 2334555566666666655532 111233445556666666654
No 47
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.31 E-value=7e-08 Score=87.20 Aligned_cols=182 Identities=20% Similarity=0.166 Sum_probs=88.9
Q ss_pred CCCCCCEEECcCCCCCC--CCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCC-CCccccCCCCCC
Q 035522 297 YLNLLEILDLSHNRLDG--PIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIG-PIPPTIGYLTNL 373 (509)
Q Consensus 297 ~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L 373 (509)
.++.++++|+.+|.+++ .+...+.++|.|+.|+++.|.+...+...-....+|+.|-+.+..+.- .....+..+|.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 34556666666666653 223334556666666666666654332221244566666666655431 122334456666
Q ss_pred CEEECcCCcCccc--CcccccC-CccCceeeeecccCCC--cCcccccCCCcCCeEecccCcCCcC-ChhhccCCCCCCE
Q 035522 374 TSLNLGYNQLSSS--IPPELMN-CSQLQNLVLSHNTLSG--IFPSEIGNLTHLRQLDLSHNFINGT-IPSQLGNIPNISA 447 (509)
Q Consensus 374 ~~L~L~~n~l~~~--~~~~~~~-~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~ 447 (509)
+.|+++.|.+... -..+... -+.+++|....|...- ..-..-.-++++..+.+..|.+... ....+..+|.+..
T Consensus 149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~ 228 (418)
T KOG2982|consen 149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC 228 (418)
T ss_pred hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence 6666666643211 0111111 1234444444443210 0000011235666667777766532 2234455666666
Q ss_pred EeCcCCcCcccC----CccccCCCeEecccCcccc
Q 035522 448 VDLSKNNLSGVV----PASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 448 L~ls~N~l~~~~----~~~~~~l~~L~ls~N~l~~ 478 (509)
|+|+.|+|..-. ...|+++..|.+++|++..
T Consensus 229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d 263 (418)
T KOG2982|consen 229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD 263 (418)
T ss_pred hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence 777766664321 1245555566666666654
No 48
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.29 E-value=9.2e-08 Score=85.35 Aligned_cols=246 Identities=21% Similarity=0.150 Sum_probs=118.0
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCccee----Cc-------hhccCCCCCCEEEccCCcCCcc
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGR----IP-------SEIGALSKLQVLNLSQNHLTGT 146 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----~~-------~~~~~l~~L~~L~L~~~~l~~~ 146 (509)
..++.++|++|.+...-+......+..-++|+..+++.- ++|. ++ .++-+||+|+..+||+|.+...
T Consensus 30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~--ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~ 107 (388)
T COG5238 30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA--FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSE 107 (388)
T ss_pred cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh--hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcc
Confidence 356677777777665443333445556666777766643 2332 22 2344667777777777766654
Q ss_pred CCcc----ccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccC---
Q 035522 147 IPSE----IGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRL--- 219 (509)
Q Consensus 147 ~~~~----l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~--- 219 (509)
.|.. +++-..|++|.+++|.+....-..+++ .|.+| ..| .-..+-|.|+++....|++..-.
T Consensus 108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigk--al~~l--a~n-------KKaa~kp~Le~vicgrNRlengs~~~ 176 (388)
T COG5238 108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGK--ALFHL--AYN-------KKAADKPKLEVVICGRNRLENGSKEL 176 (388)
T ss_pred cchHHHHHHhcCCCceeEEeecCCCCccchhHHHH--HHHHH--HHH-------hhhccCCCceEEEeccchhccCcHHH
Confidence 4433 334556666666666543111000110 00000 000 00122344555555555443110
Q ss_pred -CcccCCCCCCcEEECcCCCCCCC-----CchhhhCCCCcceeecccCcCCCCC----chhccCCCCcceeecccccccC
Q 035522 220 -PREVGNLKILELLYLDSNNLTGP-----IPSTLYHLNPLIEWYLAYNNLVGPL----PKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 220 -~~~l~~l~~L~~L~l~~n~l~~~-----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
...+..-..|+++.+..|.+... +...++.+.+|+.|++..|.++..- ...+...+.|+.|.+..|-++.
T Consensus 177 ~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~ 256 (388)
T COG5238 177 SAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSN 256 (388)
T ss_pred HHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhcc
Confidence 01112223455555555554321 1112334555666666666554321 1233445566777777665543
Q ss_pred cchhh----h--cCCCCCCEEECcCCCCCCCCccc-------cCCCCCcCeeeCccccCC
Q 035522 290 PISST----I--GYLNLLEILDLSHNRLDGPIPST-------IGNLTNLTSLVLSSNQLS 336 (509)
Q Consensus 290 ~~~~~----~--~~~~~L~~L~l~~n~l~~~~~~~-------~~~l~~L~~L~ls~n~l~ 336 (509)
.-... | ...|+|..|...+|.+.+.+-.. -..+|-|..|.+.+|++.
T Consensus 257 ~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~ 316 (388)
T COG5238 257 EGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK 316 (388)
T ss_pred ccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence 22111 1 23566777777777654422111 124667777888888776
No 49
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=2.1e-08 Score=90.52 Aligned_cols=180 Identities=22% Similarity=0.175 Sum_probs=125.3
Q ss_pred CCCCEEeccCCcCcc-cCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCc-CCCC-CchhccCCCCcce
Q 035522 203 TKLTGLNLSLNKLSG-RLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNN-LVGP-LPKEVGNMKNLKI 279 (509)
Q Consensus 203 ~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~-~~~~-~~~~l~~~~~L~~ 279 (509)
+.|+++|++...++. .+-..+..+.+|+.|.+.++++.+.+...++...+|++++++.+. ++.. ..-.+..++.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 458999999877653 222345678899999999999998888889999999999998764 3321 1123567889999
Q ss_pred eecccccccCcchh-hh-cCCCCCCEEECcCCCC--C-CCCccccCCCCCcCeeeCcccc-CCccCcccccCCCCCCEEE
Q 035522 280 LLLHRNNLTGPISS-TI-GYLNLLEILDLSHNRL--D-GPIPSTIGNLTNLTSLVLSSNQ-LSGLLPREVGNLKYLDSRS 353 (509)
Q Consensus 280 L~L~~n~~~~~~~~-~~-~~~~~L~~L~l~~n~l--~-~~~~~~~~~l~~L~~L~ls~n~-l~~~~~~~~~~l~~L~~L~ 353 (509)
|+++.|........ .+ .--+.|+.|+++++.- . ..+..-...+++|.+||+++|. ++......|-.++.|++|.
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lS 344 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLS 344 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeee
Confidence 99999876533211 11 1236788899988632 1 1222233568999999999874 4444455677889999999
Q ss_pred cCCCcCCCCCcc---ccCCCCCCCEEECcCCcCc
Q 035522 354 LDGNNLIGPIPP---TIGYLTNLTSLNLGYNQLS 384 (509)
Q Consensus 354 L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~ 384 (509)
++.|.. .+|. .+...|+|.+|++.++--.
T Consensus 345 lsRCY~--i~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 345 LSRCYD--IIPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred hhhhcC--CChHHeeeeccCcceEEEEeccccCc
Confidence 998864 3444 3466789999998776433
No 50
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=6.3e-07 Score=81.18 Aligned_cols=201 Identities=17% Similarity=0.121 Sum_probs=90.1
Q ss_pred CCcceeecccCcCCC--CCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCC-CccccCCCCCcCe
Q 035522 251 NPLIEWYLAYNNLVG--PLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGP-IPSTIGNLTNLTS 327 (509)
Q Consensus 251 ~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~ 327 (509)
+.++++|+.+|.++. .+...+.++|.|+.|+++.|.+...+...-....+|+.|-+.+..+.-. ....+..+|.+++
T Consensus 71 ~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vte 150 (418)
T KOG2982|consen 71 TDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTE 150 (418)
T ss_pred hhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhh
Confidence 344455555554442 1222334555555555555555433221112334555555555544321 1223344555555
Q ss_pred eeCccccCCccC--cccccC-CCCCCEEEcCCCcCCC--CCccccCCCCCCCEEECcCCcCccc-CcccccCCccCceee
Q 035522 328 LVLSSNQLSGLL--PREVGN-LKYLDSRSLDGNNLIG--PIPPTIGYLTNLTSLNLGYNQLSSS-IPPELMNCSQLQNLV 401 (509)
Q Consensus 328 L~ls~n~l~~~~--~~~~~~-l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~~~~L~~L~ 401 (509)
|+++.|.+.... ...... -+.++++....|...- .+...-..+|++..+.+..|.+.+. -......++.+..|+
T Consensus 151 lHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~Ln 230 (418)
T KOG2982|consen 151 LHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCLN 230 (418)
T ss_pred hhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhhh
Confidence 555555332110 011111 1233444444432210 0001112356666666666655432 112333445555666
Q ss_pred eecccCCCc-CcccccCCCcCCeEecccCcCCcCChh------hccCCCCCCEEeCc
Q 035522 402 LSHNTLSGI-FPSEIGNLTHLRQLDLSHNFINGTIPS------QLGNIPNISAVDLS 451 (509)
Q Consensus 402 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~p~------~~~~l~~L~~L~ls 451 (509)
|+.++|.+- -.+.+..++.|..|.++++.+.+.+.. .++.+++++.|+=+
T Consensus 231 L~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~vLNGs 287 (418)
T KOG2982|consen 231 LGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQVLNGS 287 (418)
T ss_pred hcccccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEEecCc
Confidence 666666521 113455667777777777766543321 23456666666533
No 51
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=98.14 E-value=1.2e-07 Score=75.89 Aligned_cols=83 Identities=31% Similarity=0.365 Sum_probs=38.3
Q ss_pred CCCCEEEcCCCcCCCCCcccc-CCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEe
Q 035522 347 KYLDSRSLDGNNLIGPIPPTI-GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLD 425 (509)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 425 (509)
..|+..++++|.+.. +|..| ..++.++.|++++|.+. .+|..+..++.|+.|+++.|.+. ..|..+..+.++-.|+
T Consensus 53 ~el~~i~ls~N~fk~-fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFKK-FPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhhh-CCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 344444555555442 22222 22334555555555555 34444555555555555555554 3344444444555555
Q ss_pred cccCcCC
Q 035522 426 LSHNFIN 432 (509)
Q Consensus 426 L~~n~l~ 432 (509)
..+|.+.
T Consensus 130 s~~na~~ 136 (177)
T KOG4579|consen 130 SPENARA 136 (177)
T ss_pred CCCCccc
Confidence 5555444
No 52
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.08 E-value=7.1e-07 Score=79.81 Aligned_cols=241 Identities=20% Similarity=0.180 Sum_probs=140.8
Q ss_pred CCCCCCcEEecCCCCCcceeCc----hhccCCCCCCEEEccCCcC---CccCCccccCCCCCcEEeccCCcCCCcCCccC
Q 035522 103 TCFPNLITFKISGTGFLSGRIP----SEIGALSKLQVLNLSQNHL---TGTIPSEIGSSRNLFQLDLSINILNGSIPLEI 175 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~----~~~~~l~~L~~L~L~~~~l---~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~ 175 (509)
..+..++.++||+|. +..+.. ..+.+-.+|+..++++-.. .+.+++.+. .+-..+
T Consensus 27 ~~~d~~~evdLSGNt-igtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~-----------------~Ll~aL 88 (388)
T COG5238 27 EMMDELVEVDLSGNT-IGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLV-----------------MLLKAL 88 (388)
T ss_pred HhhcceeEEeccCCc-ccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHH-----------------HHHHHH
Confidence 345667777777776 433322 2234445666666654211 111221110 001123
Q ss_pred CCCCCCCEEECcCCCCCCCCcc----cccCCCCCCEEeccCCcCcccCC-------------cccCCCCCCcEEECcCCC
Q 035522 176 GNLKDLDYLMLQGNKLDGLIPS----SIGNLTKLTGLNLSLNKLSGRLP-------------REVGNLKILELLYLDSNN 238 (509)
Q Consensus 176 ~~l~~L~~L~L~~n~~~~~~~~----~l~~l~~L~~L~l~~n~l~~~~~-------------~~l~~l~~L~~L~l~~n~ 238 (509)
.+||+|+.++++.|.+....|. .+++-+.|++|.+++|.+....- .-..+-|.|++.....|+
T Consensus 89 lkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNR 168 (388)
T COG5238 89 LKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNR 168 (388)
T ss_pred hcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccch
Confidence 3445555555555544433332 23445566666666665431111 112345889999999998
Q ss_pred CCCCCc----hhhhCCCCcceeecccCcCCCCCc-----hhccCCCCcceeecccccccCc----chhhhcCCCCCCEEE
Q 035522 239 LTGPIP----STLYHLNPLIEWYLAYNNLVGPLP-----KEVGNMKNLKILLLHRNNLTGP----ISSTIGYLNLLEILD 305 (509)
Q Consensus 239 l~~~~~----~~l~~~~~L~~L~l~~n~~~~~~~-----~~l~~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~ 305 (509)
+..... ..+....+|+++.+..|.+..... ..+..+.+|+.|++..|.++-. +...+..++.|+.|.
T Consensus 169 lengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~ 248 (388)
T COG5238 169 LENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELR 248 (388)
T ss_pred hccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhcc
Confidence 763211 123334689999999998764311 2345678999999999988732 345567788899999
Q ss_pred CcCCCCCCCCcccc------CCCCCcCeeeCccccCCccCccc-------ccCCCCCCEEEcCCCcCCC
Q 035522 306 LSHNRLDGPIPSTI------GNLTNLTSLVLSSNQLSGLLPRE-------VGNLKYLDSRSLDGNNLIG 361 (509)
Q Consensus 306 l~~n~l~~~~~~~~------~~l~~L~~L~ls~n~l~~~~~~~-------~~~l~~L~~L~L~~n~l~~ 361 (509)
+.+|-++......+ ...++|..|...+|...+..... -..++-|..|.+.+|.+..
T Consensus 249 lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E 317 (388)
T COG5238 249 LNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE 317 (388)
T ss_pred ccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence 99998865432221 13588999999999765432211 1457778888889998863
No 53
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.95 E-value=8.7e-06 Score=52.69 Aligned_cols=37 Identities=43% Similarity=0.780 Sum_probs=22.6
Q ss_pred CcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCc
Q 035522 419 THLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 419 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
++|++|++++|+|+ .+|..+.++++|+.|++++|+|+
T Consensus 1 ~~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 35666666666666 45555666666666666666665
No 54
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.91 E-value=6.5e-07 Score=71.73 Aligned_cols=81 Identities=27% Similarity=0.339 Sum_probs=33.8
Q ss_pred CCCCEEEccCCcCCccCCcccc-CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIG-SSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
.+|+..+|++|.+. .+|..|. ..+.++.|++++|+++ .+|..+..++.|+.|+++.|.+. ..|..+..+.++.+|+
T Consensus 53 ~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 53 YELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLD 129 (177)
T ss_pred ceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhc
Confidence 34444455555554 3333332 2234444444444444 33444444444444444444443 2223333344444444
Q ss_pred ccCCc
Q 035522 210 LSLNK 214 (509)
Q Consensus 210 l~~n~ 214 (509)
..+|.
T Consensus 130 s~~na 134 (177)
T KOG4579|consen 130 SPENA 134 (177)
T ss_pred CCCCc
Confidence 43333
No 55
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.91 E-value=6.6e-05 Score=73.10 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=28.3
Q ss_pred CCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccc
Q 035522 273 NMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSN 333 (509)
Q Consensus 273 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n 333 (509)
.+.+++.|++++|.++. +| .-.++|++|.+++|.--..+|..+ .++|++|++++|
T Consensus 50 ~~~~l~~L~Is~c~L~s-LP---~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~C 104 (426)
T PRK15386 50 EARASGRLYIKDCDIES-LP---VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHC 104 (426)
T ss_pred HhcCCCEEEeCCCCCcc-cC---CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCc
Confidence 34566666666665552 23 123356666666543222344333 245666666665
No 56
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.86 E-value=4.5e-06 Score=87.89 Aligned_cols=134 Identities=25% Similarity=0.271 Sum_probs=68.7
Q ss_pred CCCcEEecCCCCCcceeCchhcc-CCCCCCEEEccCCcCCc-cCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIG-ALSKLQVLNLSQNHLTG-TIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDY 183 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~~l~~-~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 183 (509)
.+|++|++++...+...-|..++ .+|.|+.|.+.+-.+.. .+.....++++|..||++++.++.. ..++++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 35666666665534333344443 45666666666544432 1222334566666666666666532 44566666666
Q ss_pred EECcCCCCCC-CCcccccCCCCCCEEeccCCcCcccC--C----cccCCCCCCcEEECcCCCCCC
Q 035522 184 LMLQGNKLDG-LIPSSIGNLTKLTGLNLSLNKLSGRL--P----REVGNLKILELLYLDSNNLTG 241 (509)
Q Consensus 184 L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~--~----~~l~~l~~L~~L~l~~n~l~~ 241 (509)
|.+.+=.+.. ..-..+.+|++|+.||+|........ . +.-..+|+|+.||.+++.+..
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 6666554442 11123556666666666654322110 0 111235666666666665553
No 57
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.72 E-value=3.7e-05 Score=49.73 Aligned_cols=36 Identities=39% Similarity=0.574 Sum_probs=16.3
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCC
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILN 168 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~ 168 (509)
+|++|++++|+++ .+|..+++|++|++|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 4455555555554 33334445555555555555444
No 58
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.67 E-value=8.8e-05 Score=63.88 Aligned_cols=102 Identities=22% Similarity=0.269 Sum_probs=45.0
Q ss_pred CCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcC-cccccCCCcCCeEecc
Q 035522 349 LDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF-PSEIGNLTHLRQLDLS 427 (509)
Q Consensus 349 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~ 427 (509)
...+++++|.+... ..+..++.|.+|.+.+|+|+.+-|.--.-+++|+.|.+.+|++.... -..+..+|+|++|.+-
T Consensus 44 ~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll 121 (233)
T KOG1644|consen 44 FDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL 121 (233)
T ss_pred cceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence 33444444444311 23344445555555555555333322223344555555555543210 0124445555555555
Q ss_pred cCcCCcCC---hhhccCCCCCCEEeCcC
Q 035522 428 HNFINGTI---PSQLGNIPNISAVDLSK 452 (509)
Q Consensus 428 ~n~l~~~~---p~~~~~l~~L~~L~ls~ 452 (509)
+|.+...- .-.+..+|+|+.||..+
T Consensus 122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred CCchhcccCceeEEEEecCcceEeehhh
Confidence 55554221 12234455666666544
No 59
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.61 E-value=0.0004 Score=67.82 Aligned_cols=137 Identities=16% Similarity=0.202 Sum_probs=89.2
Q ss_pred hcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCC
Q 035522 295 IGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLT 374 (509)
Q Consensus 295 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 374 (509)
+..+..++.|++++|.++ .+|. -..+|++|.+++|.-...+|..+ .++|+.|++++|.....+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccc
Confidence 455788999999999887 4562 24579999999875444566544 3589999999984333444 3577
Q ss_pred EEECcCCcCcc--cCcccccCCccCceeeeecccCC--CcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeC
Q 035522 375 SLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLS--GIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDL 450 (509)
Q Consensus 375 ~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l 450 (509)
.|++..+.... .+| ++|+.|.+.+++.. ..+|.. -.++|++|++++|... ..|..+. .+|+.|++
T Consensus 116 ~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~l 184 (426)
T PRK15386 116 SLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITL 184 (426)
T ss_pred eEEeCCCCCcccccCc------chHhheeccccccccccccccc--cCCcccEEEecCCCcc-cCccccc--ccCcEEEe
Confidence 88887665432 233 34677777543311 111211 2368999999998866 4454443 58899998
Q ss_pred cCCc
Q 035522 451 SKNN 454 (509)
Q Consensus 451 s~N~ 454 (509)
+.|.
T Consensus 185 s~n~ 188 (426)
T PRK15386 185 HIEQ 188 (426)
T ss_pred cccc
Confidence 8763
No 60
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.55 E-value=4.7e-05 Score=80.37 Aligned_cols=152 Identities=18% Similarity=0.166 Sum_probs=104.9
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
..+++|++++...-... ++...-..+|.|++|.+.+-.+..+++.....++++|+.||+|+++++.. ..++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~--W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNG--WPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhcc--HHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccH
Confidence 56788888775433211 11222346899999999998755555556677899999999999999844 778999999
Q ss_pred cEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCC--c----ccccCCCCCCEEeccCCcCcccCCcc-cCCCCCC
Q 035522 158 FQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLI--P----SSIGNLTKLTGLNLSLNKLSGRLPRE-VGNLKIL 229 (509)
Q Consensus 158 ~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~--~----~~l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L 229 (509)
+.|.+.+=.+.. ..-..+.++++|+.||++........ . +.-..+|+|+.||.+++.+...+-+. +..-++|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L 277 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNL 277 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccH
Confidence 999998877663 22235678999999999987644321 1 12346899999999998876543322 2233444
Q ss_pred cEEE
Q 035522 230 ELLY 233 (509)
Q Consensus 230 ~~L~ 233 (509)
+.+.
T Consensus 278 ~~i~ 281 (699)
T KOG3665|consen 278 QQIA 281 (699)
T ss_pred hhhh
Confidence 4443
No 61
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.46 E-value=0.00022 Score=61.49 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=7.4
Q ss_pred cCCCCcceeecccccc
Q 035522 272 GNMKNLKILLLHRNNL 287 (509)
Q Consensus 272 ~~~~~L~~L~L~~n~~ 287 (509)
..+++|++|.+-+|.+
T Consensus 110 a~~p~L~~Ltll~Npv 125 (233)
T KOG1644|consen 110 ASCPKLEYLTLLGNPV 125 (233)
T ss_pred ccCCccceeeecCCch
Confidence 3344444554444444
No 62
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.43 E-value=0.00059 Score=56.31 Aligned_cols=108 Identities=17% Similarity=0.195 Sum_probs=43.0
Q ss_pred CCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCC
Q 035522 99 QFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNL 178 (509)
Q Consensus 99 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 178 (509)
...|.++++|+.+.+.. . +...-..+|..+++|+.+.+.++ +.......|.+++.++.+.+.+ .+.......|..+
T Consensus 5 ~~~F~~~~~l~~i~~~~-~-~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 5 NNAFYNCSNLESITFPN-T-IKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTTTTT-TT--EEEETS-T---EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HHHHhCCCCCCEEEECC-C-eeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccc
Confidence 34555666666666653 2 33333334556656666666553 4433344455555566666643 2221222334445
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCCEEeccC
Q 035522 179 KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSL 212 (509)
Q Consensus 179 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 212 (509)
++|+.+.+..+ +.......+.+. +|+.+.+..
T Consensus 81 ~~l~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred ccccccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 55555555443 332223334444 555555443
No 63
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=97.39 E-value=0.00064 Score=56.11 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=49.8
Q ss_pred hccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC
Q 035522 126 EIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL 205 (509)
Q Consensus 126 ~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 205 (509)
+|..+.+|+.+.+.. .+.......|.++++|+.+++..+ +.......|.++++++.+.+.+ .+.......|..+++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 466667777777764 455455556666767777777654 4433344566666677777754 3333333455666667
Q ss_pred CEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 206 TGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 206 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
+.+++..+ +.......|.++ +|+.+.+..
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS 112 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC
Confidence 76666543 332333445554 666665554
No 64
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.20 E-value=9.5e-06 Score=77.12 Aligned_cols=82 Identities=22% Similarity=0.124 Sum_probs=37.8
Q ss_pred CCCEEEccCCcCCcc--CCccccCCCCCcEEeccCCcCC-CcCCccC-CCCCCCCEEECcCC-CCCCCCcc-cccCCCCC
Q 035522 132 KLQVLNLSQNHLTGT--IPSEIGSSRNLFQLDLSINILN-GSIPLEI-GNLKDLDYLMLQGN-KLDGLIPS-SIGNLTKL 205 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~--~~~~l~~l~~L~~L~L~~n~~~-~~~p~~~-~~l~~L~~L~L~~n-~~~~~~~~-~l~~l~~L 205 (509)
.||.|.++++.=.+. +-.....++++++|++.++... ...-..+ ..+++|++|++..| .++...-. --..+++|
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL 218 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL 218 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence 577777777653322 1122345677777766666421 1111111 24555666666553 22222111 11234555
Q ss_pred CEEeccCC
Q 035522 206 TGLNLSLN 213 (509)
Q Consensus 206 ~~L~l~~n 213 (509)
++++++.+
T Consensus 219 ~~lNlSwc 226 (483)
T KOG4341|consen 219 KYLNLSWC 226 (483)
T ss_pred HHhhhccC
Confidence 55555544
No 65
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=97.19 E-value=1.2e-05 Score=76.35 Aligned_cols=153 Identities=19% Similarity=0.076 Sum_probs=84.7
Q ss_pred CCCcceeecccCcCCCCCc--hhccCCCCcceeeccccc-ccCcchhhh-cCCCCCCEEECcCCCCCC--CCccccCCCC
Q 035522 250 LNPLIEWYLAYNNLVGPLP--KEVGNMKNLKILLLHRNN-LTGPISSTI-GYLNLLEILDLSHNRLDG--PIPSTIGNLT 323 (509)
Q Consensus 250 ~~~L~~L~l~~n~~~~~~~--~~l~~~~~L~~L~L~~n~-~~~~~~~~~-~~~~~L~~L~l~~n~l~~--~~~~~~~~l~ 323 (509)
+..|+.++.+++...+..+ .--.+..+|+.+.++.++ ++..-...+ .+++.|+.+++.++.... .+...-.+++
T Consensus 293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~ 372 (483)
T KOG4341|consen 293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP 372 (483)
T ss_pred hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence 4556666666554432211 112455778888777765 222111122 356778888887765421 1223334678
Q ss_pred CcCeeeCccccCCccC-----cccccCCCCCCEEEcCCCcCCC-CCccccCCCCCCCEEECcCCcCccc--CcccccCCc
Q 035522 324 NLTSLVLSSNQLSGLL-----PREVGNLKYLDSRSLDGNNLIG-PIPPTIGYLTNLTSLNLGYNQLSSS--IPPELMNCS 395 (509)
Q Consensus 324 ~L~~L~ls~n~l~~~~-----~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~ 395 (509)
.|+.+.++.|...... ...-..+..++.+.++++.... ..-+.+..+++|+.+++..++-... +...-.+++
T Consensus 373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp 452 (483)
T KOG4341|consen 373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLP 452 (483)
T ss_pred hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCc
Confidence 8888888877543211 1222456678888888886542 3334556778888888888764321 111223455
Q ss_pred cCceeee
Q 035522 396 QLQNLVL 402 (509)
Q Consensus 396 ~L~~L~L 402 (509)
+++...+
T Consensus 453 ~i~v~a~ 459 (483)
T KOG4341|consen 453 NIKVHAY 459 (483)
T ss_pred cceehhh
Confidence 5555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.99 E-value=0.00017 Score=64.87 Aligned_cols=13 Identities=54% Similarity=0.687 Sum_probs=5.7
Q ss_pred CCCCCCEEEccCC
Q 035522 129 ALSKLQVLNLSQN 141 (509)
Q Consensus 129 ~l~~L~~L~L~~~ 141 (509)
.+++|++|.++.|
T Consensus 63 ~Lp~LkkL~lsdn 75 (260)
T KOG2739|consen 63 KLPKLKKLELSDN 75 (260)
T ss_pred CcchhhhhcccCC
Confidence 3444444444444
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.64 E-value=0.0013 Score=59.24 Aligned_cols=107 Identities=20% Similarity=0.194 Sum_probs=65.3
Q ss_pred ccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCC--cCcccCcccccCCccCceeeeecccCCCc-CcccccCCC
Q 035522 343 VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYN--QLSSSIPPELMNCSQLQNLVLSHNTLSGI-FPSEIGNLT 419 (509)
Q Consensus 343 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~ 419 (509)
......|+.+.+.+..++.. ..+..+++|+.|.++.| ++.+.++.....+++|+++++++|++... --.....++
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 33445566666666655432 24456778888888888 55555554555668888888888887621 012345567
Q ss_pred cCCeEecccCcCCcCC---hhhccCCCCCCEEeCc
Q 035522 420 HLRQLDLSHNFINGTI---PSQLGNIPNISAVDLS 451 (509)
Q Consensus 420 ~L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~ls 451 (509)
+|..|++.+|..+..- -..|.-+++|++||-.
T Consensus 117 nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~ 151 (260)
T KOG2739|consen 117 NLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDGC 151 (260)
T ss_pred chhhhhcccCCccccccHHHHHHHHhhhhcccccc
Confidence 7778888888766421 1334456667666543
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.56 E-value=0.00012 Score=66.02 Aligned_cols=100 Identities=27% Similarity=0.320 Sum_probs=66.6
Q ss_pred CCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcC-cccccCCCcCCeE
Q 035522 346 LKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF-PSEIGNLTHLRQL 424 (509)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 424 (509)
+.+.++|++.+|.+.++ .....++.|+.|.|+-|.|+.. ..+..|++|++|+|..|.|.+.- -.-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 34556677777776643 2345677888888888888744 23667888888888888876321 1235677888888
Q ss_pred ecccCcCCcCChh-----hccCCCCCCEEe
Q 035522 425 DLSHNFINGTIPS-----QLGNIPNISAVD 449 (509)
Q Consensus 425 ~L~~n~l~~~~p~-----~~~~l~~L~~L~ 449 (509)
.|..|.-.|..+. .+.-+|+|+.||
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhcc
Confidence 8888876655442 344567777775
No 69
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.43 E-value=0.00047 Score=71.07 Aligned_cols=15 Identities=33% Similarity=0.242 Sum_probs=7.6
Q ss_pred CCCCCcCeeeCcccc
Q 035522 320 GNLTNLTSLVLSSNQ 334 (509)
Q Consensus 320 ~~l~~L~~L~ls~n~ 334 (509)
..+++++.+.+..+.
T Consensus 359 ~~~~~l~~~~l~~~~ 373 (482)
T KOG1947|consen 359 RSCPKLTDLSLSYCG 373 (482)
T ss_pred hcCCCcchhhhhhhh
Confidence 344555555555544
No 70
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.42 E-value=0.00019 Score=64.90 Aligned_cols=57 Identities=25% Similarity=0.200 Sum_probs=24.1
Q ss_pred CCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCc
Q 035522 156 NLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS 216 (509)
Q Consensus 156 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 216 (509)
+.+.|++-+|.+.+. ....+++.|++|.|+-|+|+.. ..+..|++|++|.|..|.|.
T Consensus 20 ~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~ 76 (388)
T KOG2123|consen 20 NVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIE 76 (388)
T ss_pred HhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccc
Confidence 344444444444321 1122344444444444444433 22444444444444444443
No 71
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=95.68 E-value=0.0018 Score=66.79 Aligned_cols=109 Identities=23% Similarity=0.104 Sum_probs=48.6
Q ss_pred CCCCcEEECcCCCCCCC--CchhhhCCCCcceeecccC-cCCCCCc----hhccCCCCcceeeccccc-ccCcchhhhc-
Q 035522 226 LKILELLYLDSNNLTGP--IPSTLYHLNPLIEWYLAYN-NLVGPLP----KEVGNMKNLKILLLHRNN-LTGPISSTIG- 296 (509)
Q Consensus 226 l~~L~~L~l~~n~l~~~--~~~~l~~~~~L~~L~l~~n-~~~~~~~----~~l~~~~~L~~L~L~~n~-~~~~~~~~~~- 296 (509)
++.|+.+.+.++.-... ........+.|++|+++++ ......+ .....+++|+.++++.+. +++..-..+.
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666665532212 2233445566666666652 1111111 122334556666666555 3322222222
Q ss_pred CCCCCCEEECcCCC-CCCCC-ccccCCCCCcCeeeCcccc
Q 035522 297 YLNLLEILDLSHNR-LDGPI-PSTIGNLTNLTSLVLSSNQ 334 (509)
Q Consensus 297 ~~~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~ls~n~ 334 (509)
.+++|+.|.+.++. +++.. -.....++.|++|++++|.
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~ 306 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCH 306 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCc
Confidence 25556666555544 33221 1122334556666665554
No 72
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.42 E-value=0.005 Score=33.03 Aligned_cols=19 Identities=42% Similarity=0.674 Sum_probs=8.7
Q ss_pred CCEEeCcCCcCcccCCcccc
Q 035522 445 ISAVDLSKNNLSGVVPASVR 464 (509)
Q Consensus 445 L~~L~ls~N~l~~~~~~~~~ 464 (509)
|++||+++|+++ .+|..|.
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 445555555554 3443333
No 73
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=94.76 E-value=0.00027 Score=71.46 Aligned_cols=83 Identities=28% Similarity=0.267 Sum_probs=46.3
Q ss_pred cceeecccCcCCCCCc----hhccCCCCcceeecccccccCcchh----hhcCC-CCCCEEECcCCCCCCC----Ccccc
Q 035522 253 LIEWYLAYNNLVGPLP----KEVGNMKNLKILLLHRNNLTGPISS----TIGYL-NLLEILDLSHNRLDGP----IPSTI 319 (509)
Q Consensus 253 L~~L~l~~n~~~~~~~----~~l~~~~~L~~L~L~~n~~~~~~~~----~~~~~-~~L~~L~l~~n~l~~~----~~~~~ 319 (509)
+..+.+.+|.+..... ..+...+.|+.|++++|.+.+.-.. .+... ..+++|++..|.+++. +...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 6677777777765432 2345566777777777776632211 12222 3455566666665542 23344
Q ss_pred CCCCCcCeeeCccccC
Q 035522 320 GNLTNLTSLVLSSNQL 335 (509)
Q Consensus 320 ~~l~~L~~L~ls~n~l 335 (509)
.....++.++++.|.+
T Consensus 169 ~~~~~l~~l~l~~n~l 184 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGL 184 (478)
T ss_pred hcccchhHHHHHhccc
Confidence 4456666666666655
No 74
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.48 E-value=0.014 Score=31.20 Aligned_cols=12 Identities=58% Similarity=0.764 Sum_probs=4.9
Q ss_pred CCEEEccCCcCC
Q 035522 133 LQVLNLSQNHLT 144 (509)
Q Consensus 133 L~~L~L~~~~l~ 144 (509)
|++|++++|.++
T Consensus 2 L~~Ldls~n~l~ 13 (22)
T PF00560_consen 2 LEYLDLSGNNLT 13 (22)
T ss_dssp ESEEEETSSEES
T ss_pred ccEEECCCCcCE
Confidence 334444444443
No 75
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=92.83 E-value=0.0013 Score=66.50 Aligned_cols=275 Identities=24% Similarity=0.217 Sum_probs=154.3
Q ss_pred CCCCEEeccCCcCcccC----CcccCCCCCCcEEECcCCCCCCCCchh----hhCC-CCcceeecccCcCCCC----Cch
Q 035522 203 TKLTGLNLSLNKLSGRL----PREVGNLKILELLYLDSNNLTGPIPST----LYHL-NPLIEWYLAYNNLVGP----LPK 269 (509)
Q Consensus 203 ~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l~~~~~~~----l~~~-~~L~~L~l~~n~~~~~----~~~ 269 (509)
..+..+.+.+|.+.... ...+...+.|+.|++++|.+.+.--.. +... ..++.|++..|.++.. +.+
T Consensus 87 ~~l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~ 166 (478)
T KOG4308|consen 87 ASLLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAA 166 (478)
T ss_pred hhHHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHH
Confidence 34778888888876432 334567788889999999887332222 2222 4566677777776653 334
Q ss_pred hccCCCCcceeecccccccC----cchhhhc----CCCCCCEEECcCCCCCCCC----ccccCCCCC-cCeeeCccccCC
Q 035522 270 EVGNMKNLKILLLHRNNLTG----PISSTIG----YLNLLEILDLSHNRLDGPI----PSTIGNLTN-LTSLVLSSNQLS 336 (509)
Q Consensus 270 ~l~~~~~L~~L~L~~n~~~~----~~~~~~~----~~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~ls~n~l~ 336 (509)
.+.....++.++++.|.+.. .++..+. ...++++|.+.+|.++... ...+...+. +..|++..|.+.
T Consensus 167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~ 246 (478)
T KOG4308|consen 167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG 246 (478)
T ss_pred HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence 45556778888888887631 1222222 3566778888887766321 122333444 666788777765
Q ss_pred cc----CcccccCC-CCCCEEEcCCCcCCCCC----ccccCCCCCCCEEECcCCcCcccCc----ccccCCccCceeeee
Q 035522 337 GL----LPREVGNL-KYLDSRSLDGNNLIGPI----PPTIGYLTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLS 403 (509)
Q Consensus 337 ~~----~~~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~ 403 (509)
.. ....+..+ ..++.++++.|.++... ...+..++.++.+.+++|.+...-. ........+..+.+.
T Consensus 247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~ 326 (478)
T KOG4308|consen 247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLG 326 (478)
T ss_pred hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcc
Confidence 33 22233344 56677778877776533 2334456677788888777764211 112223344555555
Q ss_pred cccCCCcCccc---------------------------------ccC-CCcCCeEecccCcCCcC----ChhhccCCCCC
Q 035522 404 HNTLSGIFPSE---------------------------------IGN-LTHLRQLDLSHNFINGT----IPSQLGNIPNI 445 (509)
Q Consensus 404 ~n~l~~~~~~~---------------------------------~~~-l~~L~~L~L~~n~l~~~----~p~~~~~l~~L 445 (509)
++.....-+.. ..+ -..+..+++..+.+.+. ++......+.+
T Consensus 327 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l 406 (478)
T KOG4308|consen 327 GTGKGTRGGTSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKL 406 (478)
T ss_pred ccCccchhHHHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchh
Confidence 44432111100 000 12345555555555433 33445566778
Q ss_pred CEEeCcCCcCcccCC--------ccccCCCeEecccCcccc
Q 035522 446 SAVDLSKNNLSGVVP--------ASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 446 ~~L~ls~N~l~~~~~--------~~~~~l~~L~ls~N~l~~ 478 (509)
+.++++.|....... ... .+..++++.|.++.
T Consensus 407 ~~~~l~~n~~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~~~ 446 (478)
T KOG4308|consen 407 EILDLSLNSLHDEGAEVLTEQLSRNG-SLKALRLSRNPITA 446 (478)
T ss_pred hhhhhhcCccchhhHHHHHHhhhhcc-cchhhhhccChhhh
Confidence 888888776543322 233 55677888887765
No 76
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.51 E-value=0.027 Score=48.98 Aligned_cols=83 Identities=14% Similarity=0.113 Sum_probs=53.7
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhcc-CCCCCCEEEccCC-cCCccCCccccCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIG-ALSKLQVLNLSQN-HLTGTIPSEIGSSR 155 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~l~~~~~~~l~~l~ 155 (509)
-.|+.++-++..+.... -..+.+++.++.|.+.+|..+...-.+.++ -.++|+.|++++| +|++.....+..++
T Consensus 101 ~~IeaVDAsds~I~~eG----le~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lk 176 (221)
T KOG3864|consen 101 VKIEAVDASDSSIMYEG----LEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLK 176 (221)
T ss_pred ceEEEEecCCchHHHHH----HHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhh
Confidence 35778888887777666 567778888888888877644433223232 2467888888766 35544445556667
Q ss_pred CCcEEeccC
Q 035522 156 NLFQLDLSI 164 (509)
Q Consensus 156 ~L~~L~L~~ 164 (509)
+|+.|.+.+
T Consensus 177 nLr~L~l~~ 185 (221)
T KOG3864|consen 177 NLRRLHLYD 185 (221)
T ss_pred hhHHHHhcC
Confidence 777776654
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.27 E-value=0.17 Score=25.03 Aligned_cols=10 Identities=40% Similarity=0.694 Sum_probs=3.1
Q ss_pred CCEEeCcCCc
Q 035522 445 ISAVDLSKNN 454 (509)
Q Consensus 445 L~~L~ls~N~ 454 (509)
|+.|++++|+
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 3333333333
No 78
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.88 E-value=0.08 Score=46.13 Aligned_cols=80 Identities=16% Similarity=0.062 Sum_probs=38.9
Q ss_pred CCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCccc-CCcccC-CCCCCcEEECcCC-CCCCCCchhhhCCCCcceee
Q 035522 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGR-LPREVG-NLKILELLYLDSN-NLTGPIPSTLYHLNPLIEWY 257 (509)
Q Consensus 181 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~-~l~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~ 257 (509)
++.++-+++.+..+.-+.+.+++.++.|.+.+|.--+. --+.++ -.++|+.|++++| +|+..--..+..+++|+.|.
T Consensus 103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~ 182 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH 182 (221)
T ss_pred EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence 45555555555544444555555555555555542110 000111 2356677777755 34444344555555565555
Q ss_pred ccc
Q 035522 258 LAY 260 (509)
Q Consensus 258 l~~ 260 (509)
+.+
T Consensus 183 l~~ 185 (221)
T KOG3864|consen 183 LYD 185 (221)
T ss_pred hcC
Confidence 543
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=88.07 E-value=0.013 Score=51.86 Aligned_cols=87 Identities=15% Similarity=0.215 Sum_probs=49.3
Q ss_pred ccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCC
Q 035522 101 NFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKD 180 (509)
Q Consensus 101 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 180 (509)
.+..+...+.||++.|+ +. .+-..|+.++.|..|+++.|.+. ..|..++.+..++.+++..|..+ ..|.+++..++
T Consensus 37 ei~~~kr~tvld~~s~r-~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 37 EIASFKRVTVLDLSSNR-LV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhccceeeeehhhhhH-HH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34445556666666555 21 12233445555666666666655 55666666666666666665555 55666666666
Q ss_pred CCEEECcCCCC
Q 035522 181 LDYLMLQGNKL 191 (509)
Q Consensus 181 L~~L~L~~n~~ 191 (509)
++++++.++.+
T Consensus 113 ~k~~e~k~~~~ 123 (326)
T KOG0473|consen 113 PKKNEQKKTEF 123 (326)
T ss_pred cchhhhccCcc
Confidence 66666655543
No 80
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=87.26 E-value=0.02 Score=50.87 Aligned_cols=85 Identities=18% Similarity=0.215 Sum_probs=51.1
Q ss_pred CCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEE
Q 035522 369 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAV 448 (509)
Q Consensus 369 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 448 (509)
.+...+.||++.|++. -+...+..++.+.+|+++.|.+. ..|..++....+..+++.+|... ..|.++...+.++++
T Consensus 40 ~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 40 SFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKN 116 (326)
T ss_pred ccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchh
Confidence 3445556666666654 23334444555666666666665 55666666666666666666655 566666666666666
Q ss_pred eCcCCcCc
Q 035522 449 DLSKNNLS 456 (509)
Q Consensus 449 ~ls~N~l~ 456 (509)
++.+|.++
T Consensus 117 e~k~~~~~ 124 (326)
T KOG0473|consen 117 EQKKTEFF 124 (326)
T ss_pred hhccCcch
Confidence 66666654
No 81
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=85.17 E-value=0.11 Score=28.44 Aligned_cols=15 Identities=40% Similarity=0.831 Sum_probs=6.4
Q ss_pred CCCCEEeCcCCcCcc
Q 035522 443 PNISAVDLSKNNLSG 457 (509)
Q Consensus 443 ~~L~~L~ls~N~l~~ 457 (509)
++|++|++++|+|++
T Consensus 2 ~~L~~L~l~~n~i~~ 16 (24)
T PF13516_consen 2 PNLETLDLSNNQITD 16 (24)
T ss_dssp TT-SEEE-TSSBEHH
T ss_pred CCCCEEEccCCcCCH
Confidence 345555555555443
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=84.98 E-value=0.83 Score=25.32 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=5.5
Q ss_pred CCCEEeCcCCcCc
Q 035522 444 NISAVDLSKNNLS 456 (509)
Q Consensus 444 ~L~~L~ls~N~l~ 456 (509)
+|++|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=84.98 E-value=0.83 Score=25.32 Aligned_cols=13 Identities=54% Similarity=0.784 Sum_probs=5.5
Q ss_pred CCCEEeCcCCcCc
Q 035522 444 NISAVDLSKNNLS 456 (509)
Q Consensus 444 ~L~~L~ls~N~l~ 456 (509)
+|++|++++|+|+
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 3444444444443
No 84
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=72.79 E-value=1.6 Score=44.17 Aligned_cols=76 Identities=24% Similarity=0.274 Sum_probs=45.4
Q ss_pred CCCcCCeEecccCcCCcC--ChhhccCCCCCCEEeCcCC--cCccc-CCccccC--CCeEecccCccccCCCCCC-----
Q 035522 417 NLTHLRQLDLSHNFINGT--IPSQLGNIPNISAVDLSKN--NLSGV-VPASVRR--IPKLIVSENNLELENSTSS----- 484 (509)
Q Consensus 417 ~l~~L~~L~L~~n~l~~~--~p~~~~~l~~L~~L~ls~N--~l~~~-~~~~~~~--l~~L~ls~N~l~~~~~ip~----- 484 (509)
+.+.+..+.|++|++... +...-...|+|+.|+|++| .+... .-..+.. +++|-+.+|++.. ..-.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~--tf~~~s~yv 293 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCT--TFSDRSEYV 293 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCcccc--chhhhHHHH
Confidence 456778888999988633 2222345688889999988 33211 1112232 3378888888876 4433
Q ss_pred ----CCCCCCCccC
Q 035522 485 ----ENAPPPQAKP 494 (509)
Q Consensus 485 ----~~~~~l~~l~ 494 (509)
+.||++..|+
T Consensus 294 ~~i~~~FPKL~~LD 307 (585)
T KOG3763|consen 294 SAIRELFPKLLRLD 307 (585)
T ss_pred HHHHHhcchheeec
Confidence 4666665553
No 85
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=70.94 E-value=3.8 Score=22.88 Aligned_cols=14 Identities=36% Similarity=0.681 Sum_probs=7.6
Q ss_pred CCCCEEeCcCCcCc
Q 035522 443 PNISAVDLSKNNLS 456 (509)
Q Consensus 443 ~~L~~L~ls~N~l~ 456 (509)
++|+.|++++|+|+
T Consensus 2 ~~L~~L~L~~NkI~ 15 (26)
T smart00365 2 TNLEELDLSQNKIK 15 (26)
T ss_pred CccCEEECCCCccc
Confidence 34555555555554
No 86
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=68.25 E-value=3.5 Score=23.00 Aligned_cols=14 Identities=36% Similarity=0.411 Sum_probs=9.5
Q ss_pred CCCeEecccCcccc
Q 035522 465 RIPKLIVSENNLEL 478 (509)
Q Consensus 465 ~l~~L~ls~N~l~~ 478 (509)
+|++|++++|+++.
T Consensus 3 ~L~~L~vs~N~Lt~ 16 (26)
T smart00364 3 SLKELNVSNNQLTS 16 (26)
T ss_pred ccceeecCCCcccc
Confidence 45567777777766
No 87
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=66.24 E-value=5.1 Score=22.69 Aligned_cols=15 Identities=40% Similarity=0.749 Sum_probs=10.5
Q ss_pred CCCCEEeCcCCcCcc
Q 035522 443 PNISAVDLSKNNLSG 457 (509)
Q Consensus 443 ~~L~~L~ls~N~l~~ 457 (509)
++|++|||++|.+..
T Consensus 2 ~~L~~LdL~~N~i~~ 16 (28)
T smart00368 2 PSLRELDLSNNKLGD 16 (28)
T ss_pred CccCEEECCCCCCCH
Confidence 467777777777753
No 88
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=63.89 E-value=41 Score=33.82 Aligned_cols=60 Identities=23% Similarity=0.237 Sum_probs=32.1
Q ss_pred CceeeeecccCCCcCc---ccccCCCcCCeEecccCcCCc----CChhhccCCCCCCEEeCcCCcCc
Q 035522 397 LQNLVLSHNTLSGIFP---SEIGNLTHLRQLDLSHNFING----TIPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~---~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
+..+.++.|......- .....-+.+.+|++++|.... .+|........++.+..+.|...
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n~p~ 481 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLNLPE 481 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCCCcc
Confidence 5566666666542211 223345677777777776542 23444444445555656655443
No 89
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=59.24 E-value=66 Score=32.45 Aligned_cols=35 Identities=23% Similarity=0.363 Sum_probs=16.5
Q ss_pred CCeEecccCcCCcCC---hhhccCCCCCCEEeCcCCcC
Q 035522 421 LRQLDLSHNFINGTI---PSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 421 L~~L~L~~n~l~~~~---p~~~~~l~~L~~L~ls~N~l 455 (509)
+..+.++.|...... ......-+.+..|++++|..
T Consensus 415 l~el~ls~~~lka~l~s~in~l~stqtl~kldisgn~m 452 (553)
T KOG4242|consen 415 LAELSLSPGPLKAGLESAINKLLSTQTLAKLDISGNGM 452 (553)
T ss_pred ccCcccCCCcccccHHHHHHhhccCcccccccccCCCc
Confidence 444555555554221 12223345556666666644
No 90
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.09 E-value=6.1 Score=40.17 Aligned_cols=66 Identities=29% Similarity=0.291 Sum_probs=44.0
Q ss_pred CCccCceeeeecccCCCc--CcccccCCCcCCeEecccCcCCcCChhhcc--CCCCCCEEeCcCCcCccc
Q 035522 393 NCSQLQNLVLSHNTLSGI--FPSEIGNLTHLRQLDLSHNFINGTIPSQLG--NIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 393 ~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~ 458 (509)
+.+.+..+.+++|++... +...-...|+|+.|+|++|...-....++. +...|++|-+.||++...
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc~t 285 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLCTT 285 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccccc
Confidence 456788899999998632 111223458999999999932212222333 345688999999999764
No 91
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=42.87 E-value=18 Score=19.86 Aligned_cols=16 Identities=31% Similarity=0.576 Sum_probs=11.5
Q ss_pred CCCCCEEeCcCCc-Ccc
Q 035522 442 IPNISAVDLSKNN-LSG 457 (509)
Q Consensus 442 l~~L~~L~ls~N~-l~~ 457 (509)
+++|+.|++++|. +++
T Consensus 1 c~~L~~L~l~~C~~itD 17 (26)
T smart00367 1 CPNLRELDLSGCTNITD 17 (26)
T ss_pred CCCCCEeCCCCCCCcCH
Confidence 4678888888884 553
Done!