Query 035522
Match_columns 509
No_of_seqs 501 out of 4483
Neff 10.1
Searched_HMMs 29240
Date Mon Mar 25 05:29:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035522.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035522hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.2E-62 4.3E-67 531.9 38.2 469 30-507 7-746 (768)
2 4eco_A Uncharacterized protein 100.0 1.5E-55 5.3E-60 466.1 27.9 431 32-478 27-601 (636)
3 4ecn_A Leucine-rich repeat pro 100.0 2.3E-53 7.9E-58 457.0 30.1 454 31-506 265-871 (876)
4 3t6q_A CD180 antigen; protein- 100.0 1.5E-49 5E-54 420.0 32.4 424 77-508 32-567 (606)
5 3rgz_A Protein brassinosteroid 100.0 3E-50 1E-54 435.2 26.4 372 106-478 294-742 (768)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.6E-49 1.2E-53 431.0 31.3 433 67-508 14-567 (844)
7 3vq2_A TLR4, TOLL-like recepto 100.0 5.2E-49 1.8E-53 415.8 30.9 418 77-508 31-565 (606)
8 3t6q_A CD180 antigen; protein- 100.0 5.6E-47 1.9E-51 400.2 37.6 408 82-500 16-512 (606)
9 1ziw_A TOLL-like receptor 3; i 100.0 6.1E-47 2.1E-51 405.3 36.5 424 77-508 24-630 (680)
10 4eco_A Uncharacterized protein 100.0 1.9E-47 6.6E-52 404.1 25.1 386 106-503 81-602 (636)
11 2z63_A TOLL-like receptor 4, v 100.0 2.1E-46 7.3E-51 393.0 30.8 418 77-507 27-537 (570)
12 2z81_A CD282 antigen, TOLL-lik 100.0 3E-46 1E-50 390.0 27.9 410 78-505 26-514 (549)
13 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-45 1E-49 379.9 23.0 387 106-508 21-488 (520)
14 4ecn_A Leucine-rich repeat pro 100.0 9.6E-45 3.3E-49 390.1 27.5 384 106-502 323-841 (876)
15 3vq2_A TLR4, TOLL-like recepto 100.0 7.4E-44 2.5E-48 376.4 31.5 393 77-484 55-563 (606)
16 1ziw_A TOLL-like receptor 3; i 100.0 2.1E-42 7.1E-47 370.2 38.1 183 82-272 8-192 (680)
17 3j0a_A TOLL-like receptor 5; m 100.0 1.2E-42 4.1E-47 379.5 32.3 318 82-408 8-375 (844)
18 2z63_A TOLL-like receptor 4, v 100.0 7E-43 2.4E-47 366.3 28.9 393 77-484 51-536 (570)
19 3v47_A TOLL-like receptor 5B a 100.0 1.1E-41 3.9E-46 347.0 31.0 354 106-460 30-412 (455)
20 4g8a_A TOLL-like receptor 4; l 100.0 3.1E-41 1.1E-45 358.2 32.6 421 78-508 52-587 (635)
21 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 7.3E-42 2.5E-46 357.4 25.3 405 81-508 34-517 (562)
22 2z81_A CD282 antigen, TOLL-lik 100.0 7.4E-42 2.5E-46 356.8 23.2 408 66-501 3-486 (549)
23 3v47_A TOLL-like receptor 5B a 100.0 3.5E-41 1.2E-45 343.4 27.1 368 109-483 13-412 (455)
24 2z7x_B TOLL-like receptor 1, v 100.0 6E-42 2E-46 355.0 20.1 383 77-478 20-482 (520)
25 1ogq_A PGIP-2, polygalacturona 100.0 8.9E-42 3.1E-46 329.5 18.8 292 31-334 2-302 (313)
26 1o6v_A Internalin A; bacterial 100.0 7E-38 2.4E-42 319.6 33.4 345 77-457 45-389 (466)
27 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.2E-38 7.5E-43 331.1 29.0 395 69-484 43-515 (562)
28 1o6v_A Internalin A; bacterial 100.0 4.7E-37 1.6E-41 313.5 32.8 346 103-478 43-389 (466)
29 2id5_A Lingo-1, leucine rich r 100.0 1.2E-37 4.1E-42 319.1 25.1 323 133-458 13-335 (477)
30 1jl5_A Outer protein YOPM; leu 100.0 2.1E-37 7.3E-42 313.5 26.1 354 77-483 10-376 (454)
31 3bz5_A Internalin-J, INLJ; leu 100.0 3.5E-37 1.2E-41 312.2 27.6 345 78-486 42-394 (457)
32 2id5_A Lingo-1, leucine rich r 100.0 5.9E-37 2E-41 314.0 27.7 350 109-464 14-364 (477)
33 3oja_B Anopheles plasmodium-re 100.0 8.9E-37 3E-41 320.7 28.9 336 104-505 49-384 (597)
34 3o6n_A APL1; leucine-rich repe 100.0 8.2E-37 2.8E-41 304.6 24.0 336 130-506 44-379 (390)
35 1jl5_A Outer protein YOPM; leu 100.0 5.4E-36 1.8E-40 303.2 27.6 349 104-502 9-371 (454)
36 3bz5_A Internalin-J, INLJ; leu 100.0 1.4E-35 4.9E-40 300.4 28.7 322 77-463 63-394 (457)
37 3o6n_A APL1; leucine-rich repe 100.0 1.6E-35 5.6E-40 295.2 28.6 290 103-408 42-331 (390)
38 4g8a_A TOLL-like receptor 4; l 100.0 3.5E-35 1.2E-39 311.6 30.8 393 77-478 75-581 (635)
39 4fmz_A Internalin; leucine ric 100.0 1.7E-34 6E-39 283.2 29.9 306 103-456 41-346 (347)
40 4fmz_A Internalin; leucine ric 100.0 5.6E-34 1.9E-38 279.6 30.3 303 154-477 43-346 (347)
41 3oja_B Anopheles plasmodium-re 100.0 3.4E-34 1.2E-38 301.1 22.7 312 154-507 50-364 (597)
42 1ogq_A PGIP-2, polygalacturona 100.0 7.5E-35 2.6E-39 281.0 14.9 251 253-507 52-310 (313)
43 2ft3_A Biglycan; proteoglycan, 100.0 3.4E-32 1.2E-36 265.1 26.7 288 132-454 34-331 (332)
44 2ft3_A Biglycan; proteoglycan, 100.0 5.3E-32 1.8E-36 263.7 28.0 288 106-405 33-330 (332)
45 1z7x_W Ribonuclease inhibitor; 100.0 9.3E-37 3.2E-41 311.3 -6.1 371 107-478 4-441 (461)
46 1xku_A Decorin; proteoglycan, 100.0 7.5E-32 2.6E-36 262.4 28.3 291 132-454 32-330 (330)
47 4fcg_A Uncharacterized protein 100.0 1.7E-33 5.7E-38 273.2 16.0 281 31-336 23-314 (328)
48 1xku_A Decorin; proteoglycan, 100.0 1.3E-31 4.4E-36 260.8 28.7 290 106-430 31-330 (330)
49 1z7x_W Ribonuclease inhibitor; 100.0 9.2E-36 3.1E-40 303.9 -6.8 380 78-461 3-445 (461)
50 2z66_A Variable lymphocyte rec 100.0 4.9E-29 1.7E-33 239.8 17.4 230 204-457 29-262 (306)
51 2z66_A Variable lymphocyte rec 100.0 9.1E-29 3.1E-33 238.0 18.3 247 135-385 11-262 (306)
52 2z80_A TOLL-like receptor 2, v 100.0 5.8E-29 2E-33 244.3 17.0 283 130-460 30-318 (353)
53 2z80_A TOLL-like receptor 2, v 100.0 1.4E-28 4.6E-33 241.7 19.0 280 63-385 26-315 (353)
54 4fcg_A Uncharacterized protein 100.0 1.6E-28 5.5E-33 238.1 18.2 225 131-360 81-314 (328)
55 3zyj_A Leucine-rich repeat-con 100.0 5.2E-28 1.8E-32 244.7 21.2 228 276-508 65-299 (440)
56 3zyi_A Leucine-rich repeat-con 100.0 6.4E-28 2.2E-32 244.9 21.2 229 275-508 75-310 (452)
57 1ozn_A Reticulon 4 receptor; N 100.0 7.1E-28 2.4E-32 229.3 20.2 225 134-385 14-239 (285)
58 3ogk_B Coronatine-insensitive 100.0 2.3E-31 7.9E-36 280.0 -4.9 201 104-307 110-326 (592)
59 3ogk_B Coronatine-insensitive 100.0 5.9E-31 2E-35 276.9 -4.5 375 78-458 112-528 (592)
60 1ozn_A Reticulon 4 receptor; N 100.0 9.6E-28 3.3E-32 228.3 17.3 140 318-457 100-239 (285)
61 3zyi_A Leucine-rich repeat-con 100.0 8.2E-27 2.8E-31 236.8 24.2 246 108-359 56-302 (452)
62 3zyj_A Leucine-rich repeat-con 99.9 1.4E-26 4.8E-31 234.2 24.2 246 108-359 45-291 (440)
63 1wwl_A Monocyte differentiatio 99.9 1.3E-28 4.3E-33 237.5 4.3 246 202-457 42-310 (312)
64 3g06_A SSPH2 (leucine-rich rep 99.9 1.6E-25 5.5E-30 233.4 27.1 265 132-464 41-305 (622)
65 1wwl_A Monocyte differentiatio 99.9 2.9E-28 9.9E-33 234.9 4.5 254 127-433 39-310 (312)
66 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.7E-30 212.3 21.9 216 64-287 2-217 (270)
67 3o53_A Protein LRIM1, AGAP0063 99.9 5.3E-28 1.8E-32 233.6 6.0 259 108-405 12-272 (317)
68 3o53_A Protein LRIM1, AGAP0063 99.9 1.6E-28 5.5E-33 237.3 2.3 266 158-461 13-281 (317)
69 3g06_A SSPH2 (leucine-rich rep 99.9 6.5E-25 2.2E-29 228.8 28.7 263 106-413 40-302 (622)
70 3oja_A Leucine-rich immune mol 99.9 2.2E-26 7.7E-31 235.0 9.6 225 204-466 35-261 (487)
71 2p1m_B Transport inhibitor res 99.9 7.7E-29 2.6E-33 260.9 -9.9 351 103-456 102-519 (594)
72 2z62_A TOLL-like receptor 4, v 99.9 6E-25 2.1E-29 207.9 17.4 203 276-505 29-241 (276)
73 3oja_A Leucine-rich immune mol 99.9 4.8E-26 1.6E-30 232.6 10.5 234 132-403 35-270 (487)
74 2p1m_B Transport inhibitor res 99.9 5.8E-29 2E-33 261.8 -11.6 394 101-500 61-518 (594)
75 1p9a_G Platelet glycoprotein I 99.9 2.4E-24 8.2E-29 204.9 18.9 205 295-508 6-215 (290)
76 2z62_A TOLL-like receptor 4, v 99.9 4.9E-24 1.7E-28 201.6 20.2 133 132-264 29-162 (276)
77 2o6q_A Variable lymphocyte rec 99.9 7.3E-23 2.5E-27 192.9 23.8 108 132-239 38-145 (270)
78 3rfs_A Internalin B, repeat mo 99.9 4.7E-24 1.6E-28 201.2 15.0 202 273-484 39-240 (272)
79 3rfs_A Internalin B, repeat mo 99.9 4.8E-23 1.6E-27 194.3 19.8 203 78-296 41-243 (272)
80 1p9a_G Platelet glycoprotein I 99.9 2E-22 6.7E-27 191.6 21.3 132 102-240 6-137 (290)
81 2ast_B S-phase kinase-associat 99.9 2.7E-24 9.3E-29 209.5 6.7 249 229-484 49-311 (336)
82 3goz_A Leucine-rich repeat-con 99.9 4.3E-24 1.5E-28 210.2 6.2 255 160-434 3-299 (362)
83 3goz_A Leucine-rich repeat-con 99.9 3.9E-24 1.3E-28 210.5 5.3 255 184-458 3-299 (362)
84 2ast_B S-phase kinase-associat 99.9 4.6E-24 1.6E-28 207.9 5.7 198 108-333 49-257 (336)
85 2ca6_A RAN GTPase-activating p 99.9 7E-25 2.4E-29 217.9 -1.0 249 195-460 24-320 (386)
86 3m19_A Variable lymphocyte rec 99.9 4.2E-22 1.4E-26 185.5 17.8 192 65-266 3-194 (251)
87 2xwt_C Thyrotropin receptor; s 99.9 2.1E-22 7.1E-27 186.2 14.3 197 275-474 31-236 (239)
88 2ca6_A RAN GTPase-activating p 99.9 2.8E-24 9.4E-29 213.6 1.6 244 123-387 24-319 (386)
89 4glp_A Monocyte differentiatio 99.9 2.8E-22 9.5E-27 192.9 15.4 203 131-360 91-307 (310)
90 4glp_A Monocyte differentiatio 99.9 2.6E-22 8.9E-27 193.1 14.5 199 299-501 91-307 (310)
91 3m19_A Variable lymphocyte rec 99.9 4.6E-21 1.6E-25 178.4 19.5 180 276-458 15-194 (251)
92 2xwt_C Thyrotropin receptor; s 99.9 8.9E-22 3E-26 181.9 14.1 131 107-240 32-169 (239)
93 1h6u_A Internalin H; cell adhe 99.9 3.5E-21 1.2E-25 184.8 17.7 192 129-336 39-230 (308)
94 1h6u_A Internalin H; cell adhe 99.9 2.5E-21 8.6E-26 185.8 16.4 193 225-457 39-231 (308)
95 3cvr_A Invasion plasmid antige 99.9 3.3E-21 1.1E-25 198.5 15.0 187 252-466 60-253 (571)
96 2o6s_A Variable lymphocyte rec 99.9 1.6E-20 5.5E-25 169.5 17.6 162 105-274 27-188 (208)
97 4ay9_X Follicle-stimulating ho 99.8 8.6E-21 3E-25 185.6 13.1 199 230-432 12-215 (350)
98 2o6s_A Variable lymphocyte rec 99.8 1E-19 3.5E-24 164.2 16.9 159 131-296 28-186 (208)
99 4ay9_X Follicle-stimulating ho 99.8 2.1E-19 7.3E-24 175.7 18.4 239 135-381 13-256 (350)
100 3cvr_A Invasion plasmid antige 99.8 1.1E-19 3.8E-24 187.1 14.6 201 63-297 39-252 (571)
101 2xot_A Amphoterin-induced prot 99.8 7.9E-20 2.7E-24 179.5 10.5 179 302-507 21-208 (361)
102 2v9t_B SLIT homolog 2 protein 99.8 3.2E-19 1.1E-23 162.2 13.5 134 372-508 33-172 (220)
103 1h6t_A Internalin B; cell adhe 99.8 6.7E-19 2.3E-23 167.4 13.0 171 273-457 44-214 (291)
104 3e6j_A Variable lymphocyte rec 99.8 4.4E-18 1.5E-22 155.7 17.8 160 63-242 15-174 (229)
105 2v70_A SLIT-2, SLIT homolog 2 99.8 1.6E-18 5.6E-23 157.6 13.4 150 326-478 14-167 (220)
106 2v9t_B SLIT homolog 2 protein 99.8 4.5E-18 1.5E-22 154.6 15.6 151 303-456 15-165 (220)
107 2v70_A SLIT-2, SLIT homolog 2 99.8 4.5E-18 1.6E-22 154.6 15.4 154 302-458 14-168 (220)
108 1h6t_A Internalin B; cell adhe 99.8 2.4E-18 8.1E-23 163.6 14.1 103 130-240 45-147 (291)
109 2xot_A Amphoterin-induced prot 99.8 4.2E-18 1.4E-22 167.2 15.0 178 277-457 20-203 (361)
110 1m9s_A Internalin B; cell inva 99.8 6.7E-18 2.3E-22 175.8 16.6 173 102-289 39-211 (605)
111 1m9s_A Internalin B; cell inva 99.8 5.9E-18 2E-22 176.2 15.2 187 230-432 24-210 (605)
112 4b8c_D Glucose-repressible alc 99.8 4.9E-19 1.7E-23 188.9 6.9 260 33-312 130-404 (727)
113 3e6j_A Variable lymphocyte rec 99.8 2.3E-17 7.8E-22 151.0 17.1 154 302-459 22-175 (229)
114 4ezg_A Putative uncharacterize 99.7 1.4E-17 4.9E-22 148.7 12.4 106 129-238 42-147 (197)
115 4ezg_A Putative uncharacterize 99.7 1.7E-17 5.7E-22 148.2 12.8 153 103-264 41-194 (197)
116 1dce_A Protein (RAB geranylger 99.7 1.2E-19 4.2E-24 187.7 -4.4 118 348-470 442-566 (567)
117 1xeu_A Internalin C; cellular 99.7 1.4E-17 4.9E-22 155.6 9.9 166 277-457 21-186 (263)
118 1dce_A Protein (RAB geranylger 99.7 1.3E-19 4.5E-24 187.5 -5.7 121 325-450 443-567 (567)
119 3sb4_A Hypothetical leucine ri 99.7 8.3E-18 2.8E-22 163.0 6.1 102 346-449 225-327 (329)
120 3sb4_A Hypothetical leucine ri 99.7 2.2E-17 7.7E-22 159.9 8.0 288 105-426 24-328 (329)
121 1xeu_A Internalin C; cellular 99.7 5.7E-17 2E-21 151.5 10.4 167 106-288 19-185 (263)
122 1w8a_A SLIT protein; signaling 99.7 2.3E-16 7.7E-21 140.1 12.7 174 326-505 11-187 (192)
123 4b8c_D Glucose-repressible alc 99.7 3.5E-17 1.2E-21 174.6 5.3 218 106-336 173-404 (727)
124 1w8a_A SLIT protein; signaling 99.7 2.6E-16 9E-21 139.7 9.8 172 302-478 11-184 (192)
125 4fs7_A Uncharacterized protein 99.7 1.3E-14 4.4E-19 144.1 22.8 329 99-447 64-392 (394)
126 2ell_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 135.7 10.1 131 106-239 24-159 (168)
127 2wfh_A SLIT homolog 2 protein 99.6 5.4E-16 1.9E-20 137.7 11.2 134 350-508 13-146 (193)
128 2ell_A Acidic leucine-rich nuc 99.6 8.8E-16 3E-20 133.2 10.5 88 369-456 69-160 (168)
129 2je0_A Acidic leucine-rich nuc 99.6 3.6E-16 1.2E-20 132.8 7.1 127 131-259 17-148 (149)
130 2je0_A Acidic leucine-rich nuc 99.6 1.3E-15 4.4E-20 129.4 9.5 128 105-235 16-148 (149)
131 4fdw_A Leucine rich hypothetic 99.6 4.8E-14 1.6E-18 139.5 22.2 264 131-407 113-382 (401)
132 4fdw_A Leucine rich hypothetic 99.6 5.1E-14 1.8E-18 139.3 22.3 267 153-432 111-383 (401)
133 4fs7_A Uncharacterized protein 99.6 1.1E-13 3.6E-18 137.5 22.2 314 123-453 63-376 (394)
134 2wfh_A SLIT homolog 2 protein 99.6 2E-14 6.8E-19 127.5 14.0 127 109-240 13-139 (193)
135 2o6r_A Variable lymphocyte rec 99.6 2.2E-14 7.5E-19 125.5 13.8 114 347-460 28-141 (177)
136 2o6r_A Variable lymphocyte rec 99.6 4.2E-14 1.4E-18 123.7 15.1 129 109-241 10-138 (177)
137 1a9n_A U2A', U2A'; complex (nu 99.5 2.7E-14 9.2E-19 124.8 8.0 105 348-456 43-153 (176)
138 1a9n_A U2A', U2A'; complex (nu 99.5 6.3E-14 2.2E-18 122.4 9.5 108 128-240 16-126 (176)
139 1ds9_A Outer arm dynein; leuci 99.5 3.5E-16 1.2E-20 139.7 -8.2 112 318-434 43-155 (198)
140 1ds9_A Outer arm dynein; leuci 99.4 2.2E-15 7.5E-20 134.5 -4.7 151 321-478 16-186 (198)
141 4gt6_A Cell surface protein; l 99.4 4.2E-11 1.4E-15 118.7 24.9 329 99-453 56-388 (394)
142 3g39_A Variable lymphocyte rec 99.4 2E-12 6.8E-17 112.0 12.9 106 133-241 11-116 (170)
143 3g39_A Variable lymphocyte rec 99.4 2E-12 6.9E-17 112.0 12.2 106 350-458 12-117 (170)
144 4gt6_A Cell surface protein; l 99.4 4.6E-11 1.6E-15 118.4 23.2 331 124-476 56-390 (394)
145 2r9u_A Variable lymphocyte rec 99.4 3.2E-12 1.1E-16 111.1 13.0 104 134-240 15-118 (174)
146 2r9u_A Variable lymphocyte rec 99.4 4E-12 1.4E-16 110.5 12.2 105 350-457 15-119 (174)
147 3un9_A NLR family member X1; l 99.2 2E-13 7E-18 133.7 -4.4 160 275-434 72-254 (372)
148 3un9_A NLR family member X1; l 99.2 2.8E-13 9.6E-18 132.7 -3.8 166 298-463 71-259 (372)
149 2ifg_A High affinity nerve gro 99.2 2.3E-11 7.7E-16 118.5 9.1 103 374-478 11-117 (347)
150 4h09_A Hypothetical leucine ri 99.2 6E-09 2.1E-13 102.5 24.6 302 101-428 41-342 (379)
151 2ifg_A High affinity nerve gro 99.1 1.7E-10 5.7E-15 112.3 11.5 102 136-240 13-116 (347)
152 4h09_A Hypothetical leucine ri 99.1 1.5E-08 5.1E-13 99.7 22.8 312 127-464 42-353 (379)
153 2ra8_A Uncharacterized protein 98.9 2E-10 6.9E-15 111.5 2.5 83 393-475 250-341 (362)
154 2ra8_A Uncharacterized protein 98.9 6.4E-10 2.2E-14 107.9 4.0 159 291-454 164-341 (362)
155 3rw6_A Nuclear RNA export fact 98.5 6.8E-10 2.3E-14 102.2 -9.3 12 66-77 77-88 (267)
156 1io0_A Tropomodulin; LRR prote 98.5 2.4E-08 8.3E-13 87.4 0.9 114 343-456 32-164 (185)
157 1io0_A Tropomodulin; LRR prote 98.4 7.8E-08 2.7E-12 84.1 1.8 66 102-168 32-106 (185)
158 3rw6_A Nuclear RNA export fact 98.2 1.6E-07 5.5E-12 86.4 0.1 63 129-193 168-234 (267)
159 3e4g_A ATP synthase subunit S, 98.1 9.1E-07 3.1E-11 75.4 3.1 84 371-454 61-150 (176)
160 3e4g_A ATP synthase subunit S, 98.0 2.6E-06 8.8E-11 72.6 2.9 83 79-165 62-149 (176)
161 3rfe_A Platelet glycoprotein I 97.9 5.1E-06 1.7E-10 67.6 3.9 61 446-509 11-76 (130)
162 1pgv_A TMD-1, tropomodulin TMD 97.3 7.8E-05 2.7E-09 64.7 2.1 111 345-455 39-169 (197)
163 1pgv_A TMD-1, tropomodulin TMD 97.0 0.00014 4.8E-09 63.1 1.2 43 294-336 36-83 (197)
164 3rfe_A Platelet glycoprotein I 96.3 0.007 2.4E-07 48.8 6.1 36 420-455 32-67 (130)
165 2lz0_A Uncharacterized protein 54.4 20 0.00068 26.7 4.9 42 194-236 11-52 (100)
166 2lz0_A Uncharacterized protein 53.4 15 0.00051 27.4 4.1 46 383-429 8-53 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.2e-62 Score=531.94 Aligned_cols=469 Identities=30% Similarity=0.444 Sum_probs=316.0
Q ss_pred ccCchhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCCCCceecCCCCCEEEEEcCCCCCccc---ccc----------
Q 035522 30 VLTASDASSAIQLEREALLNSGWWNSSWATANYTSDHCKWMGITCNSAGSIVEISSYEMDNNGN---AAE---------- 96 (509)
Q Consensus 30 ~~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~---~~~---------- 96 (509)
+.+.++|++||++||+++.||. .+++|.. ++|||.|.||+|+ .++|+.|++++.++.|. +.+
T Consensus 7 ~~~~~~~~~all~~k~~~~~~~-~l~~W~~---~~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~~ 81 (768)
T 3rgz_A 7 SQSLYREIHQLISFKDVLPDKN-LLPDWSS---NKNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLES 81 (768)
T ss_dssp -CCHHHHHHHHHHHHTTCSCTT-SSTTCCT---TSCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCCE
T ss_pred ccCCHHHHHHHHHHHhhCCCcc-cccCCCC---CCCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCcccc
Confidence 4557789999999999998887 8999974 6899999999998 78999999999998875 210
Q ss_pred ---------cCCCccCCCCCCcEEecCCCCCcceeCch--hccCCCCCCEEEccCCcCCccCCccc-c------------
Q 035522 97 ---------LSQFNFTCFPNLITFKISGTGFLSGRIPS--EIGALSKLQVLNLSQNHLTGTIPSEI-G------------ 152 (509)
Q Consensus 97 ---------~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~~~l~~~~~~~l-~------------ 152 (509)
..+..+..+++|++|++++|. +.|.+|. .++++++|++|++++|.+.+..|..+ .
T Consensus 82 l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~ 160 (768)
T 3rgz_A 82 LFLSNSHINGSVSGFKCSASLTSLDLSRNS-LSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA 160 (768)
T ss_dssp EECTTSCEEECCCCCCCCTTCCEEECCSSE-EEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred cCCcCCCcCCCchhhccCCCCCEEECCCCc-CCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence 012567888999999999998 8888887 78888888888887776665554432 2
Q ss_pred -------------------------------------CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCC
Q 035522 153 -------------------------------------SSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLI 195 (509)
Q Consensus 153 -------------------------------------~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~ 195 (509)
.+++|++|++++|.+.+.+|. ++++++|++|++++|.+++.+
T Consensus 161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~ 239 (768)
T 3rgz_A 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF 239 (768)
T ss_dssp SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCH
T ss_pred CccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcc
Confidence 334444555555555544444 666777777777777776666
Q ss_pred cccccCCCCCCEEeccCCcCcc----------------------cCCcccCCC-CCCcEEECcCCCC-------------
Q 035522 196 PSSIGNLTKLTGLNLSLNKLSG----------------------RLPREVGNL-KILELLYLDSNNL------------- 239 (509)
Q Consensus 196 ~~~l~~l~~L~~L~l~~n~l~~----------------------~~~~~l~~l-~~L~~L~l~~n~l------------- 239 (509)
|..+.++++|++|++++|.+.+ .+|..+... ++|++|++++|.+
T Consensus 240 ~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~ 319 (768)
T 3rgz_A 240 SRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSL 319 (768)
T ss_dssp HHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTT
T ss_pred cHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCC
Confidence 6666665555555555544432 233332221 3333333333332
Q ss_pred -----------CCCCchh-hhCCCCcceeecccCc---------------------------------------------
Q 035522 240 -----------TGPIPST-LYHLNPLIEWYLAYNN--------------------------------------------- 262 (509)
Q Consensus 240 -----------~~~~~~~-l~~~~~L~~L~l~~n~--------------------------------------------- 262 (509)
.+.+|.. +..+++|++|++++|.
T Consensus 320 L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L 399 (768)
T 3rgz_A 320 LESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQEL 399 (768)
T ss_dssp CCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEE
T ss_pred ccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEE
Confidence 2222221 2222222222222222
Q ss_pred ------CCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCC------------------------CC
Q 035522 263 ------LVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNR------------------------LD 312 (509)
Q Consensus 263 ------~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~------------------------l~ 312 (509)
+++.+|..+..+++|+.|++++|.+++.+|..++.+++|++|++++|. ++
T Consensus 400 ~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~ 479 (768)
T 3rgz_A 400 YLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT 479 (768)
T ss_dssp ECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC
T ss_pred ECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc
Confidence 222233334445566666666666655555555555555555555544 44
Q ss_pred CCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccc-
Q 035522 313 GPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPEL- 391 (509)
Q Consensus 313 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~- 391 (509)
+.+|..+..+++|++|++++|++++.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+++.+|..+
T Consensus 480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~ 559 (768)
T 3rgz_A 480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMF 559 (768)
T ss_dssp SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGG
T ss_pred CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHh
Confidence 4445555555555555555555555555555555666666666666655566666666666666666666655544322
Q ss_pred ---------------------------------------------------------------------cCCccCceeee
Q 035522 392 ---------------------------------------------------------------------MNCSQLQNLVL 402 (509)
Q Consensus 392 ---------------------------------------------------------------------~~~~~L~~L~L 402 (509)
..+++|+.|++
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdL 639 (768)
T 3rgz_A 560 KQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDM 639 (768)
T ss_dssp TTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEEC
T ss_pred cccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEEC
Confidence 22456778888
Q ss_pred ecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccC---CCeEecccCccccC
Q 035522 403 SHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRR---IPKLIVSENNLELE 479 (509)
Q Consensus 403 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~---l~~L~ls~N~l~~~ 479 (509)
++|++++.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.||+++|+++|.+|..+.+ |++||+++|+++|
T Consensus 640 s~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g- 718 (768)
T 3rgz_A 640 SYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSG- 718 (768)
T ss_dssp CSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEE-
T ss_pred cCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccc-
Confidence 888888889999999999999999999999999999999999999999999999999987654 5599999999999
Q ss_pred CCCCC-CCCCCCCccCcCCCcCCCCcccc
Q 035522 480 NSTSS-ENAPPPQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 480 ~~ip~-~~~~~l~~l~l~~N~~lc~~~~~ 507 (509)
.||. ++|..+...++.|||++||.++.
T Consensus 719 -~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 719 -PIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp -ECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred -cCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 9998 78999999999999999998874
No 2
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.5e-55 Score=466.07 Aligned_cols=431 Identities=20% Similarity=0.280 Sum_probs=253.0
Q ss_pred CchhHHHHHHHHHHhccCCCCCC--------CCCCCCCCCCCCCCC---CceecCCCCCEEEEEcCCCCCcccccccCCC
Q 035522 32 TASDASSAIQLEREALLNSGWWN--------SSWATANYTSDHCKW---MGITCNSAGSIVEISSYEMDNNGNAAELSQF 100 (509)
Q Consensus 32 ~~~~~~~~l~~~~~~~~~~~~~~--------~~w~~~~~~~~~c~w---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~ 100 (509)
....|+.||.++++++.++.+.. .+|.. +.++|.| .||+|+..++|+.|+++++++.|.+ +.
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~l----p~ 99 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRV----PD 99 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCC---SSCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEE----CG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCC---CCCcccccCCCCeEEcCCCCEEEEEecCcccCCcC----Ch
Confidence 34568899999999997665432 36874 6899999 9999988899999999999999999 89
Q ss_pred ccCCCCCCcEEecCCCCC--------------------------------------------------------------
Q 035522 101 NFTCFPNLITFKISGTGF-------------------------------------------------------------- 118 (509)
Q Consensus 101 ~l~~l~~L~~L~l~~~~~-------------------------------------------------------------- 118 (509)
.+..+++|++|++++|.+
T Consensus 100 ~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 179 (636)
T 4eco_A 100 AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSS 179 (636)
T ss_dssp GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCC
T ss_pred HHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHHHHHHHhhcCcccccccccc
Confidence 999999999999999851
Q ss_pred ---------------cceeCchhccCCCCCCEEEccCCcCCcc-----------------CCcccc--CCCCCcEEeccC
Q 035522 119 ---------------LSGRIPSEIGALSKLQVLNLSQNHLTGT-----------------IPSEIG--SSRNLFQLDLSI 164 (509)
Q Consensus 119 ---------------~~~~~~~~~~~l~~L~~L~L~~~~l~~~-----------------~~~~l~--~l~~L~~L~L~~ 164 (509)
+++ +|..++++++|++|++++|.+++. +|..++ ++++|++|++++
T Consensus 180 ~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~ 258 (636)
T 4eco_A 180 RITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYN 258 (636)
T ss_dssp CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEEC
T ss_pred ccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecC
Confidence 222 455555555555555555555543 555555 555555555555
Q ss_pred CcCCCcCCccCCCCCCCCEEECcCCC-CCC-CCcccccCC------CCCCEEeccCCcCcccCCc--ccCCCCCCcEEEC
Q 035522 165 NILNGSIPLEIGNLKDLDYLMLQGNK-LDG-LIPSSIGNL------TKLTGLNLSLNKLSGRLPR--EVGNLKILELLYL 234 (509)
Q Consensus 165 n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l------~~L~~L~l~~n~l~~~~~~--~l~~l~~L~~L~l 234 (509)
|.+.+.+|..++++++|++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .++++++|++|++
T Consensus 259 n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L 337 (636)
T 4eco_A 259 CPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLEC 337 (636)
T ss_dssp CTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEEC
T ss_pred CcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeC
Confidence 55555555555555555555555555 554 455544443 55555555555555 4454 5555555555555
Q ss_pred cCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCC-cceeecccccccCcchhhhcCCC--CCCEEECcCCCC
Q 035522 235 DSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKN-LKILLLHRNNLTGPISSTIGYLN--LLEILDLSHNRL 311 (509)
Q Consensus 235 ~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~L~~n~~~~~~~~~~~~~~--~L~~L~l~~n~l 311 (509)
++|.++|.+| .+..+++|++|++++|.++ .+|..+..+++ |+.|++++|.++ .+|..+...+ +|++|++++|.+
T Consensus 338 ~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l 414 (636)
T 4eco_A 338 LYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEI 414 (636)
T ss_dssp CSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCT
T ss_pred cCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcC
Confidence 5555555555 5555555555555555555 44445555555 555555555555 4444444332 555555555555
Q ss_pred CCCCccccC-------CCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCC-C-------CCCCEE
Q 035522 312 DGPIPSTIG-------NLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY-L-------TNLTSL 376 (509)
Q Consensus 312 ~~~~~~~~~-------~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-l-------~~L~~L 376 (509)
++..|..+. .+++|++|++++|.+++..+..+..+++|+.|++++|.++ .+|..... . ++|++|
T Consensus 415 ~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L 493 (636)
T 4eco_A 415 GSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSI 493 (636)
T ss_dssp TTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEE
T ss_pred CCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEE
Confidence 555555444 4455555555555555332223344555555555555555 33332211 1 155555
Q ss_pred ECcCCcCcccCccccc--CCccCceeeeecccCCCcCcccccCCCcCCeEec------ccCcCCcCChhhccCCCCCCEE
Q 035522 377 NLGYNQLSSSIPPELM--NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL------SHNFINGTIPSQLGNIPNISAV 448 (509)
Q Consensus 377 ~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~l~~~~p~~~~~l~~L~~L 448 (509)
++++|.++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|++|++ ++|.+.+.+|..+..+++|++|
T Consensus 494 ~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L 571 (636)
T 4eco_A 494 DLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQL 571 (636)
T ss_dssp ECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEE
T ss_pred ECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEE
Confidence 55555555 4444443 55555555555555554 4555555555555555 3344455555555555555555
Q ss_pred eCcCCcCcccCCc-cccCCCeEecccCcccc
Q 035522 449 DLSKNNLSGVVPA-SVRRIPKLIVSENNLEL 478 (509)
Q Consensus 449 ~ls~N~l~~~~~~-~~~~l~~L~ls~N~l~~ 478 (509)
++++|++ +.+|. ...+|++|++++|++..
T Consensus 572 ~Ls~N~l-~~ip~~~~~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 572 QIGSNDI-RKVNEKITPNISVLDIKDNPNIS 601 (636)
T ss_dssp ECCSSCC-CBCCSCCCTTCCEEECCSCTTCE
T ss_pred ECCCCcC-CccCHhHhCcCCEEECcCCCCcc
Confidence 5555555 33333 22445555555555543
No 3
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=2.3e-53 Score=456.96 Aligned_cols=454 Identities=18% Similarity=0.231 Sum_probs=343.0
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCCCCCCC--CCCCCC--CCC------------CceecCCCCCEEEEEcCCCCCcccc
Q 035522 31 LTASDASSAIQLEREALLNSGWWNSSWATA--NYTSDH--CKW------------MGITCNSAGSIVEISSYEMDNNGNA 94 (509)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~--~~~~~~--c~w------------~gv~c~~~~~v~~l~l~~~~~~~~~ 94 (509)
....+|++||+++|+++.++ +|... |...++ |.| .||.|+..++|+.|+|+++++.|.+
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~i 339 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRV 339 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcC
Confidence 44567899999999999765 66531 012355 999 9999988899999999999999999
Q ss_pred cccCCCccCCCCCCcEEec-CCCCCccee---------------------------------------------------
Q 035522 95 AELSQFNFTCFPNLITFKI-SGTGFLSGR--------------------------------------------------- 122 (509)
Q Consensus 95 ~~~~~~~l~~l~~L~~L~l-~~~~~~~~~--------------------------------------------------- 122 (509)
+..+..+++|++|+| ++|. +.|.
T Consensus 340 ----p~~l~~L~~L~~LdLss~N~-lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~ 414 (876)
T 4ecn_A 340 ----PDAIGQLTELKVLSFGTHSE-TVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEM 414 (876)
T ss_dssp ----CGGGGGCTTCCEEESCCTTH-HHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTS
T ss_pred ----chHHhccccceEeeeccccc-ccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccc
Confidence 899999999999999 6664 3332
Q ss_pred -------------------------CchhccCCCCCCEEEccCCcCCc-----------------cCCcccc--CCCCCc
Q 035522 123 -------------------------IPSEIGALSKLQVLNLSQNHLTG-----------------TIPSEIG--SSRNLF 158 (509)
Q Consensus 123 -------------------------~~~~~~~l~~L~~L~L~~~~l~~-----------------~~~~~l~--~l~~L~ 158 (509)
+|..++++++|++|+|++|.+++ .+|..++ ++++|+
T Consensus 415 ~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~ 494 (876)
T 4ecn_A 415 KPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLT 494 (876)
T ss_dssp CCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCC
T ss_pred cccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCC
Confidence 67778888888888888888887 3788776 888888
Q ss_pred EEeccCCcCCCcCCccCCCCCCCCEEECcCCC-CCC-CCcccccCC-------CCCCEEeccCCcCcccCCc--ccCCCC
Q 035522 159 QLDLSINILNGSIPLEIGNLKDLDYLMLQGNK-LDG-LIPSSIGNL-------TKLTGLNLSLNKLSGRLPR--EVGNLK 227 (509)
Q Consensus 159 ~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~-~~~-~~~~~l~~l-------~~L~~L~l~~n~l~~~~~~--~l~~l~ 227 (509)
+|++++|.+.+.+|..++++++|++|++++|+ +++ .+|..+.++ ++|++|++++|.++ .+|. .+.+++
T Consensus 495 ~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~ 573 (876)
T 4ecn_A 495 DVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMV 573 (876)
T ss_dssp EEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCT
T ss_pred EEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCC
Confidence 88888888888888888888888888888887 776 667655544 48888888888888 6777 788888
Q ss_pred CCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCC-cceeecccccccCcchhhhcCCCC--CCEE
Q 035522 228 ILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKN-LKILLLHRNNLTGPISSTIGYLNL--LEIL 304 (509)
Q Consensus 228 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~-L~~L~L~~n~~~~~~~~~~~~~~~--L~~L 304 (509)
+|++|++++|.++ .+| .+..+++|++|++++|.+. .+|..+..+++ |+.|++++|.++ .+|..+...+. |+.|
T Consensus 574 ~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L 649 (876)
T 4ecn_A 574 KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSV 649 (876)
T ss_dssp TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEE
T ss_pred CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEE
Confidence 8888888888887 677 7788888888888888888 67777777887 888888888887 56666666544 8888
Q ss_pred ECcCCCCCCCCcccc---C--CCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCC--------C
Q 035522 305 DLSHNRLDGPIPSTI---G--NLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL--------T 371 (509)
Q Consensus 305 ~l~~n~l~~~~~~~~---~--~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l--------~ 371 (509)
++++|.+.+.+|... . .+++|+.|++++|.++...+..+..+++|+.|++++|.+. .+|..+... +
T Consensus 650 ~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~ 728 (876)
T 4ecn_A 650 DFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTY 728 (876)
T ss_dssp ECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGG
T ss_pred ECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccC
Confidence 888888877555322 2 3347888888888887433333457788888888888887 555544332 2
Q ss_pred CCCEEECcCCcCcccCccccc--CCccCceeeeecccCCCcCcccccCCCcCCeEeccc------CcCCcCChhhccCCC
Q 035522 372 NLTSLNLGYNQLSSSIPPELM--NCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSH------NFINGTIPSQLGNIP 443 (509)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~l~~~~p~~~~~l~ 443 (509)
+|++|++++|+++ .+|..+. .+++|+.|++++|.+.+ +|..+..+++|+.|+|++ |.+.+.+|..+..++
T Consensus 729 ~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~ 806 (876)
T 4ecn_A 729 LLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCP 806 (876)
T ss_dssp GCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCS
T ss_pred CccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCC
Confidence 7888888888888 6676766 78888888888888886 677788888888888865 677778888888888
Q ss_pred CCCEEeCcCCcCcccCCcc-ccCCCeEecccCccccCCCCCCCCC---CCCCccCcCCCcCCC--Cccc
Q 035522 444 NISAVDLSKNNLSGVVPAS-VRRIPKLIVSENNLELENSTSSENA---PPPQAKPFKGNKGKQ--RKIV 506 (509)
Q Consensus 444 ~L~~L~ls~N~l~~~~~~~-~~~l~~L~ls~N~l~~~~~ip~~~~---~~l~~l~l~~N~~lc--~~~~ 506 (509)
+|+.|++++|++ +.+|.. ..+|+.|||++|++.. ++...+ .......+.+|+..| +|+.
T Consensus 807 ~L~~L~Ls~N~L-~~Ip~~l~~~L~~LdLs~N~l~~---i~~~~~~~~~~~~~~~L~~n~~~~I~gC~~ 871 (876)
T 4ecn_A 807 SLIQLQIGSNDI-RKVDEKLTPQLYILDIADNPNIS---IDVTSVCPYIEAGMYVLLYDKTQDIRGCDA 871 (876)
T ss_dssp SCCEEECCSSCC-CBCCSCCCSSSCEEECCSCTTCE---EECGGGHHHHHTTCCEEECCTTSEEESCGG
T ss_pred CCCEEECCCCCC-CccCHhhcCCCCEEECCCCCCCc---cChHHccccccchheeecCCCccccCCCCC
Confidence 888888888888 566653 4567788888888776 433111 122344455554444 7764
No 4
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=1.5e-49 Score=420.03 Aligned_cols=424 Identities=19% Similarity=0.126 Sum_probs=300.6
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
...+++|+++++.+++.. +..|.++++|++|++++|. +.+..|.+|.++++|++|++++|.+.+..|..|+++++
T Consensus 32 ~~~l~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 106 (606)
T 3t6q_A 32 PNSTECLEFSFNVLPTIQ----NTTFSRLINLTFLDLTRCQ-IYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKA 106 (606)
T ss_dssp CTTCCEEECTTCCCSEEC----TTTSTTCTTCSEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTT
T ss_pred CCcCcEEEccCCccCcCC----hhHhccCccceEEECCCCc-cceeChhhccCccccCeeeCCCCcccccChhhhccccc
Confidence 357889999999888766 7788888889999998888 77777888888888888888888888777888888888
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCc--EEEC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILE--LLYL 234 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~--~L~l 234 (509)
|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++..+..++.+++|+ +|++
T Consensus 107 L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l 186 (606)
T 3t6q_A 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNL 186 (606)
T ss_dssp CCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEEC
T ss_pred ccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEec
Confidence 88888888888865566677788888888888777764333444466777777776666544444444444444 3333
Q ss_pred cCCC---------------------------------------------------------------------------C
Q 035522 235 DSNN---------------------------------------------------------------------------L 239 (509)
Q Consensus 235 ~~n~---------------------------------------------------------------------------l 239 (509)
++|. +
T Consensus 187 ~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l 266 (606)
T 3t6q_A 187 NGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266 (606)
T ss_dssp TTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred CCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence 3333 3
Q ss_pred CCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCC----
Q 035522 240 TGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPI---- 315 (509)
Q Consensus 240 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~---- 315 (509)
++..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.+
T Consensus 267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 345 (606)
T 3t6q_A 267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGC 345 (606)
T ss_dssp SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSST
T ss_pred CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhh
Confidence 2222333555566666666666665 45555666666666666666665554445555555555555555444322
Q ss_pred -----------------------ccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCcc-ccCCCC
Q 035522 316 -----------------------PSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPP-TIGYLT 371 (509)
Q Consensus 316 -----------------------~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~ 371 (509)
+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+. .+..++
T Consensus 346 ~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 425 (606)
T 3t6q_A 346 LENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLH 425 (606)
T ss_dssp TTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCT
T ss_pred hhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcc
Confidence 33445555666666666665555556666666777777777766655443 366777
Q ss_pred CCCEEECcCCcCcccCcccccCCccCceeeeecccCCCc---CcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEE
Q 035522 372 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI---FPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAV 448 (509)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 448 (509)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 426 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 505 (606)
T 3t6q_A 426 LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHV 505 (606)
T ss_dssp TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEE
Confidence 788888888877777777777888888888888887652 23567788888999999998888888889999999999
Q ss_pred eCcCCcCcccCCccccCCC--eEecccCccccCCCCCC--CCCCCCCccCcCCCcCCCCccccC
Q 035522 449 DLSKNNLSGVVPASVRRIP--KLIVSENNLELENSTSS--ENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 449 ~ls~N~l~~~~~~~~~~l~--~L~ls~N~l~~~~~ip~--~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
++++|++++..|..+.+++ +|++++|++++ ..|. ..+++++.+++.|||+.|.|+..|
T Consensus 506 ~Ls~N~l~~~~~~~l~~l~~L~L~L~~N~l~~--~~~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 567 (606)
T 3t6q_A 506 DLSHNRLTSSSIEALSHLKGIYLNLASNHISI--ILPSLLPILSQQRTINLRQNPLDCTCSNIY 567 (606)
T ss_dssp ECCSSCCCGGGGGGGTTCCSCEEECCSSCCCC--CCGGGHHHHHTSSEEECTTCCEECSGGGHH
T ss_pred ECCCCccCcCChhHhCcccccEEECcCCcccc--cCHhhcccCCCCCEEeCCCCCccccCCcHH
Confidence 9999999988888776655 88999999998 3343 567889999999999999998653
No 5
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=3e-50 Score=435.20 Aligned_cols=372 Identities=36% Similarity=0.523 Sum_probs=313.1
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCcc-ccCCCCCcEEeccCCcCCCcCCccCCCCC-CCCE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSE-IGSSRNLFQLDLSINILNGSIPLEIGNLK-DLDY 183 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~-l~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~ 183 (509)
++|++|++++|. +.+.+|..++++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.+.+|..+.+++ +|++
T Consensus 294 ~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~ 372 (768)
T 3rgz_A 294 DTLTGLDLSGNH-FYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372 (768)
T ss_dssp TTCSEEECCSSE-EEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSE
T ss_pred CcCCEEECcCCc-CCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcE
Confidence 566666666666 55566666666666666666666666555544 56666666666666666666666665555 6666
Q ss_pred EECcCCCCCCCCcccccC--CCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccC
Q 035522 184 LMLQGNKLDGLIPSSIGN--LTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 184 L~L~~n~~~~~~~~~l~~--l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
|++++|.+++.+|..+.. +++|++|++++|.+++.+|..+.++++|++|++++|.+++.+|..+..+++|++|++++|
T Consensus 373 L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n 452 (768)
T 3rgz_A 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLN 452 (768)
T ss_dssp EECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSS
T ss_pred EEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCC
Confidence 666666666666655555 677888888888888888888999999999999999999899999999999999999999
Q ss_pred cCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcc
Q 035522 262 NLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPR 341 (509)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~ 341 (509)
.+.+.+|..+..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.++..+++|++|++++|++++.+|.
T Consensus 453 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 532 (768)
T 3rgz_A 453 MLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532 (768)
T ss_dssp CCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred cccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCCEEEcCCCcCCCCCcccc------------------------------------------------------
Q 035522 342 EVGNLKYLDSRSLDGNNLIGPIPPTI------------------------------------------------------ 367 (509)
Q Consensus 342 ~~~~l~~L~~L~L~~n~l~~~~~~~~------------------------------------------------------ 367 (509)
.+..+++|+.|++++|.+.|.+|..+
T Consensus 533 ~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 612 (768)
T 3rgz_A 533 ELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNP 612 (768)
T ss_dssp GGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCC
T ss_pred HHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 99999999999999999887776543
Q ss_pred ----------------CCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcC
Q 035522 368 ----------------GYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFI 431 (509)
Q Consensus 368 ----------------~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 431 (509)
..+++|+.|++++|++++.+|..+++++.|+.|++++|.+++.+|..++.+++|++|+|++|++
T Consensus 613 ~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l 692 (768)
T 3rgz_A 613 CNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKL 692 (768)
T ss_dssp SCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCC
T ss_pred cccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcc
Confidence 3356799999999999999999999999999999999999999999999999999999999999
Q ss_pred CcCChhhccCCCCCCEEeCcCCcCcccCCcc--ccCCCeEecccCc-ccc
Q 035522 432 NGTIPSQLGNIPNISAVDLSKNNLSGVVPAS--VRRIPKLIVSENN-LEL 478 (509)
Q Consensus 432 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~--~~~l~~L~ls~N~-l~~ 478 (509)
+|.+|..+..++.|++||+++|+++|.+|+. +..+....+.+|+ +.|
T Consensus 693 ~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 693 DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp EECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEES
T ss_pred cCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcC
Confidence 9999999999999999999999999999963 5666677777886 555
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.6e-49 Score=430.98 Aligned_cols=433 Identities=21% Similarity=0.224 Sum_probs=324.1
Q ss_pred CCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeC-chhccCCCCCCEEEccCCcCCc
Q 035522 67 CKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRI-PSEIGALSKLQVLNLSQNHLTG 145 (509)
Q Consensus 67 c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~ 145 (509)
|.|..|.+ ...++++|+++++.+.+.. +..|..+++|++|++++|. ..+.+ |.+|.++++|++|+|++|.+.+
T Consensus 14 ~~L~~vP~-lp~~l~~LdLs~N~i~~i~----~~~~~~l~~L~~LdLs~n~-~~~~i~~~~f~~L~~L~~L~Ls~N~l~~ 87 (844)
T 3j0a_A 14 CNLTQVPQ-VLNTTERLLLSFNYIRTVT----ASSFPFLEQLQLLELGSQY-TPLTIDKEAFRNLPNLRILDLGSSKIYF 87 (844)
T ss_dssp CCSSCCCS-SCTTCCEEEEESCCCCEEC----SSSCSSCCSCSEEEECTTC-CCCEECTTTTSSCTTCCEEECTTCCCCE
T ss_pred CCCCCCCC-CCCCcCEEECCCCcCCccC----hhHCcccccCeEEeCCCCC-CccccCHHHhcCCCCCCEEECCCCcCcc
Confidence 56777877 6789999999999998876 7889999999999999997 45555 7789999999999999999998
Q ss_pred cCCccccCCCCCcEEeccCCcCCCcCCcc--CCCCCCCCEEECcCCCCCCCCc-ccccCCCCCCEEeccCCcCcccCCcc
Q 035522 146 TIPSEIGSSRNLFQLDLSINILNGSIPLE--IGNLKDLDYLMLQGNKLDGLIP-SSIGNLTKLTGLNLSLNKLSGRLPRE 222 (509)
Q Consensus 146 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (509)
..|..|+++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|.+++..+..
T Consensus 88 ~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~ 167 (844)
T 3j0a_A 88 LHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167 (844)
T ss_dssp ECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG
T ss_pred cCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH
Confidence 88999999999999999999999766665 8899999999999999987755 57899999999999999987766665
Q ss_pred cCCC--CC------------------------------CcEEECcCCCCCCCCchhhhC---------------------
Q 035522 223 VGNL--KI------------------------------LELLYLDSNNLTGPIPSTLYH--------------------- 249 (509)
Q Consensus 223 l~~l--~~------------------------------L~~L~l~~n~l~~~~~~~l~~--------------------- 249 (509)
+..+ ++ |++|++++|.+++..+..+..
T Consensus 168 l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~ 247 (844)
T 3j0a_A 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGF 247 (844)
T ss_dssp GHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSS
T ss_pred cccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccc
Confidence 5443 44 455555555444333322211
Q ss_pred -----------------CCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCC
Q 035522 250 -----------------LNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLD 312 (509)
Q Consensus 250 -----------------~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 312 (509)
.++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++|++++|.++
T Consensus 248 ~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 327 (844)
T 3j0a_A 248 GFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327 (844)
T ss_dssp SCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCS
T ss_pred cccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCC
Confidence 134566666666666555556666677777777777776666666677777777777777776
Q ss_pred CCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCC------------------cc---------
Q 035522 313 GPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPI------------------PP--------- 365 (509)
Q Consensus 313 ~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------------------~~--------- 365 (509)
+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++.. |.
T Consensus 328 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l~~L~ 407 (844)
T 3j0a_A 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIH 407 (844)
T ss_dssp CCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTCCEEE
T ss_pred ccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCcccccccccccceee
Confidence 666666777777777777777776665666666777777777776655310 00
Q ss_pred -------------ccCCCCCCCEEECcCCcCcccCcc-cccCCccCceeeeecccCC-----CcCcccccCCCcCCeEec
Q 035522 366 -------------TIGYLTNLTSLNLGYNQLSSSIPP-ELMNCSQLQNLVLSHNTLS-----GIFPSEIGNLTHLRQLDL 426 (509)
Q Consensus 366 -------------~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L 426 (509)
.+..+++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+..|..+++|++|+|
T Consensus 408 ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~L 487 (844)
T 3j0a_A 408 LSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYL 487 (844)
T ss_dssp CCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCC
T ss_pred cccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCcccccEEEC
Confidence 012345555555555555532221 2334566666666666664 333456788899999999
Q ss_pred ccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccc-cCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCCcc
Q 035522 427 SHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV-RRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 427 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~-~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~~~ 505 (509)
++|.+++..|..+..+++|+.|++++|++++..+..+ .+|+.|++++|++++ +++..|.++..+++.|||+.|+|+
T Consensus 488 s~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~~L~~L~Ls~N~l~~---~~~~~~~~L~~l~l~~Np~~C~c~ 564 (844)
T 3j0a_A 488 NHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLPANLEILDISRNQLLA---PNPDVFVSLSVLDITHNKFICECE 564 (844)
T ss_dssp CHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCCSCCCEEEEEEECCCC---CCSCCCSSCCEEEEEEECCCCSSS
T ss_pred CCCcccccChhHccchhhhheeECCCCCCCccChhhhhccccEEECCCCcCCC---CChhHhCCcCEEEecCCCcccccc
Confidence 9999998888889999999999999999998777655 578899999999999 555668899999999999999999
Q ss_pred ccC
Q 035522 506 VTR 508 (509)
Q Consensus 506 ~~~ 508 (509)
+.|
T Consensus 565 ~~~ 567 (844)
T 3j0a_A 565 LST 567 (844)
T ss_dssp CCS
T ss_pred cHH
Confidence 865
No 7
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.2e-49 Score=415.82 Aligned_cols=418 Identities=19% Similarity=0.143 Sum_probs=335.7
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..++++|+++++.+.+.. +..|.++++|++|++++|. +++..|.+|.++++|++|++++|.+.+..|..|+++++
T Consensus 31 ~~~l~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 105 (606)
T 3vq2_A 31 PSSTKNIDLSFNPLKILK----SYSFSNFSELQWLDLSRCE-IETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS 105 (606)
T ss_dssp CTTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred CCCcCEEECCCCCcCEeC----hhhccCCccCcEEeCCCCc-ccccCHHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence 468999999999998876 7789999999999999999 88888889999999999999999999888999999999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCc----E
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDG-LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILE----L 231 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~----~ 231 (509)
|++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|+ +
T Consensus 106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~ 185 (606)
T 3vq2_A 106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS 185 (606)
T ss_dssp CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence 9999999999997777889999999999999999986 5688999999999999999998877666554443332 4
Q ss_pred EECcCCCCCCCCch------------------------------------------------------------------
Q 035522 232 LYLDSNNLTGPIPS------------------------------------------------------------------ 245 (509)
Q Consensus 232 L~l~~n~l~~~~~~------------------------------------------------------------------ 245 (509)
|++++|.+++..+.
T Consensus 186 L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~ 265 (606)
T 3vq2_A 186 LDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDE 265 (606)
T ss_dssp EECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEE
T ss_pred eeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhh
Confidence 55555544422111
Q ss_pred ------------------------------------hhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccC
Q 035522 246 ------------------------------------TLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 246 ------------------------------------~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
.+..+++|++|++++|.+ +.+| .+ .+++|+.|++++|...+
T Consensus 266 l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~l~~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~ 342 (606)
T 3vq2_A 266 FRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSI 342 (606)
T ss_dssp EEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCCCCCCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCE
T ss_pred eeccccccccccccccccCCCCCEEEecCccchhhhhccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCcc
Confidence 122222333333333333 2333 12 44444444444443322
Q ss_pred cchhhhcCCCCCCEEECcCCCCCCC--CccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCc-cc
Q 035522 290 PISSTIGYLNLLEILDLSHNRLDGP--IPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIP-PT 366 (509)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 366 (509)
.. .+..+++|++|++++|.+++. .+..+..+++|++|++++|.+++ ++..+..+++|+.|++++|.+.+..+ ..
T Consensus 343 ~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 419 (606)
T 3vq2_A 343 SF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSA 419 (606)
T ss_dssp EC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTT
T ss_pred ch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhh
Confidence 21 345667777777777777654 36677788888888888888774 45778889999999999999988777 67
Q ss_pred cCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCC-cCcccccCCCcCCeEecccCcCCcCChhhccCCCCC
Q 035522 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG-IFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNI 445 (509)
Q Consensus 367 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L 445 (509)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ .+|..+..+++|++|++++|.+++..|..+..+++|
T Consensus 420 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 499 (606)
T 3vq2_A 420 FLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRL 499 (606)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccC
Confidence 8899999999999999998888899999999999999999987 478889999999999999999998889999999999
Q ss_pred CEEeCcCCcCcccCCcccc---CCCeEecccCccccCCCCCC--CCCC-CCCccCcCCCcCCCCccccC
Q 035522 446 SAVDLSKNNLSGVVPASVR---RIPKLIVSENNLELENSTSS--ENAP-PPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 446 ~~L~ls~N~l~~~~~~~~~---~l~~L~ls~N~l~~~~~ip~--~~~~-~l~~l~l~~N~~lc~~~~~~ 508 (509)
++|++++|++++..|..+. +|++|++++|+++. +|. ..++ +++.+++.+||+.|+|++.|
T Consensus 500 ~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~---~p~~~~~l~~~L~~l~l~~N~~~c~c~~~~ 565 (606)
T 3vq2_A 500 QLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIET---SKGILQHFPKSLAFFNLTNNSVACICEHQK 565 (606)
T ss_dssp CEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCCC---EESCGGGSCTTCCEEECCSCCCCCSSTTHH
T ss_pred CEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCcc---cCHhHhhhcccCcEEEccCCCcccCCccHH
Confidence 9999999999998887765 46699999999987 887 4554 59999999999999999764
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=5.6e-47 Score=400.24 Aligned_cols=408 Identities=20% Similarity=0.176 Sum_probs=333.4
Q ss_pred EEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEe
Q 035522 82 EISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLD 161 (509)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 161 (509)
.++.++.+++.. +..+. +.+++|++++|. +++..|..|+++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 16 ~~~c~~~~l~~i-----P~~l~--~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 87 (606)
T 3t6q_A 16 TYNCENLGLNEI-----PGTLP--NSTECLEFSFNV-LPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLV 87 (606)
T ss_dssp EEECTTSCCSSC-----CTTSC--TTCCEEECTTCC-CSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred eEECCCCCcccC-----cCCCC--CcCcEEEccCCc-cCcCChhHhccCccceEEECCCCccceeChhhccCccccCeee
Confidence 445555555432 33333 478999999999 8888888999999999999999999988899999999999999
Q ss_pred ccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC
Q 035522 162 LSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241 (509)
Q Consensus 162 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 241 (509)
+++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+.+.....+..+++|++|++++|.+++
T Consensus 88 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 167 (606)
T 3t6q_A 88 LTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHY 167 (606)
T ss_dssp CTTCCCSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCE
T ss_pred CCCCcccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccc
Confidence 99999998889999999999999999999998778889999999999999999987544445569999999999999997
Q ss_pred CCchhhhCCCCcc--eeecccCcCCC------------------------------------------------------
Q 035522 242 PIPSTLYHLNPLI--EWYLAYNNLVG------------------------------------------------------ 265 (509)
Q Consensus 242 ~~~~~l~~~~~L~--~L~l~~n~~~~------------------------------------------------------ 265 (509)
..+..+..+++|+ ++++++|.+.+
T Consensus 168 ~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~ 247 (606)
T 3t6q_A 168 LSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAV 247 (606)
T ss_dssp ECHHHHHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGG
T ss_pred cChhhhhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhH
Confidence 7777788777777 66666655443
Q ss_pred ---------------------CCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCC
Q 035522 266 ---------------------PLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTN 324 (509)
Q Consensus 266 ---------------------~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 324 (509)
..+..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..|..+..+++
T Consensus 248 ~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 326 (606)
T 3t6q_A 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPS 326 (606)
T ss_dssp GGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTT
T ss_pred hchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCc
Confidence 33334677889999999999998 67888999999999999999999877888999999
Q ss_pred cCeeeCccccCCccCcc-cccCCCCCCEEEcCCCcCCCCC--ccccCCCCCCCEEECcCCcCcccCcccccCCccCceee
Q 035522 325 LTSLVLSSNQLSGLLPR-EVGNLKYLDSRSLDGNNLIGPI--PPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLV 401 (509)
Q Consensus 325 L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~ 401 (509)
|++|++++|.+.+.++. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|+.|+
T Consensus 327 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 327 LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLD 406 (606)
T ss_dssp CSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEE
T ss_pred CCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEE
Confidence 99999999988866554 4788899999999999887654 66778888888999988888877777888888888888
Q ss_pred eecccCCCcCcc-cccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCccc-C-----CccccCCCeEecccC
Q 035522 402 LSHNTLSGIFPS-EIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV-V-----PASVRRIPKLIVSEN 474 (509)
Q Consensus 402 L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~-----~~~~~~l~~L~ls~N 474 (509)
+++|.+.+..+. .+..+++|++|++++|.+.+..|..+..+++|++|++++|++++. + ...+.+|++|++++|
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n 486 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence 888888766543 377888888888888888877777788888888888888888762 1 123456678888888
Q ss_pred ccccCCCCCC--CCCCCCCccCcCCCcC
Q 035522 475 NLELENSTSS--ENAPPPQAKPFKGNKG 500 (509)
Q Consensus 475 ~l~~~~~ip~--~~~~~l~~l~l~~N~~ 500 (509)
++++ ..|. ..+++++.+++++|..
T Consensus 487 ~l~~--~~~~~~~~l~~L~~L~Ls~N~l 512 (606)
T 3t6q_A 487 DLSS--IDQHAFTSLKMMNHVDLSHNRL 512 (606)
T ss_dssp CCCE--ECTTTTTTCTTCCEEECCSSCC
T ss_pred ccCc--cChhhhccccCCCEEECCCCcc
Confidence 8877 3343 5667777777777754
No 9
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=6.1e-47 Score=405.30 Aligned_cols=424 Identities=23% Similarity=0.218 Sum_probs=249.4
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..++++|+++++.+.+.. +..|.++++|++|++++|. +.+..|..++++++|++|++++|.+.+..+..|+++++
T Consensus 24 ~~~l~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 24 PTNITVLNLTHNQLRRLP----AANFTRYSQLTSLDVGFNT-ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp CTTCSEEECCSSCCCCCC----GGGGGGGTTCSEEECCSSC-CCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCCcEEECCCCCCCCcC----HHHHhCCCcCcEEECCCCc-cCccCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 357888888888887654 5567888888888888887 77777777888888888888888877555556778888
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccC--CCCCCcEEEC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVG--NLKILELLYL 234 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~--~l~~L~~L~l 234 (509)
|++|++++|.+.+..|..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+. .+++|++|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 88888888887766666777788888888888877777777777777777777777766644433322 2344444444
Q ss_pred cCCCCCCCCch---------------------------------------------------hhhCCC--CcceeecccC
Q 035522 235 DSNNLTGPIPS---------------------------------------------------TLYHLN--PLIEWYLAYN 261 (509)
Q Consensus 235 ~~n~l~~~~~~---------------------------------------------------~l~~~~--~L~~L~l~~n 261 (509)
++|.+++..+. .+..++ +|++|++++|
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n 258 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYN 258 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTS
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCC
Confidence 44444332222 222221 2455555555
Q ss_pred cCCCCCchhccCCCCcceeecccccccCcchh---------------------------------hhcCCCCCCEEECcC
Q 035522 262 NLVGPLPKEVGNMKNLKILLLHRNNLTGPISS---------------------------------TIGYLNLLEILDLSH 308 (509)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~---------------------------------~~~~~~~L~~L~l~~ 308 (509)
.+.+..+..+..+++|++|++++|.+++..+. .+..+++|++|++++
T Consensus 259 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~ 338 (680)
T 1ziw_A 259 NLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMED 338 (680)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCS
T ss_pred CcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCC
Confidence 54444444444455555555555444332222 222333444444444
Q ss_pred CCCCCCCccccCCC----------------------------------------------------CCcCeeeCccccCC
Q 035522 309 NRLDGPIPSTIGNL----------------------------------------------------TNLTSLVLSSNQLS 336 (509)
Q Consensus 309 n~l~~~~~~~~~~l----------------------------------------------------~~L~~L~ls~n~l~ 336 (509)
|.+++..+..+..+ ++|++|++++|.++
T Consensus 339 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 418 (680)
T 1ziw_A 339 NDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIG 418 (680)
T ss_dssp CCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCE
T ss_pred CccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCc
Confidence 44443333333333 33334444443333
Q ss_pred ccCc-ccccCCCCCCEEEcCCCcCCC--------------------------CCccccCCCCCCCEEECcCCcCcccCcc
Q 035522 337 GLLP-REVGNLKYLDSRSLDGNNLIG--------------------------PIPPTIGYLTNLTSLNLGYNQLSSSIPP 389 (509)
Q Consensus 337 ~~~~-~~~~~l~~L~~L~L~~n~l~~--------------------------~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 389 (509)
+.++ ..+..+++|++|++++|++.+ .+|..+..+++|++|++++|++++..+.
T Consensus 419 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~ 498 (680)
T 1ziw_A 419 QELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDD 498 (680)
T ss_dssp EECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred cccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChh
Confidence 2222 233333344444444333221 2233334444555555555555544444
Q ss_pred cccCCccCceeeeecccCCCcC--------cccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc
Q 035522 390 ELMNCSQLQNLVLSHNTLSGIF--------PSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA 461 (509)
Q Consensus 390 ~~~~~~~L~~L~L~~n~l~~~~--------~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~ 461 (509)
.+..+++|++|++++|.+.+.. +..+..+++|++|++++|++....+..|..+++|++|++++|++++..+.
T Consensus 499 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~ 578 (680)
T 1ziw_A 499 MLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPAS 578 (680)
T ss_dssp TTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTT
T ss_pred hhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHh
Confidence 4555555555555555554321 11245566666666666666633334567777778888877777765554
Q ss_pred cc---cCCCeEecccCccccCCCCCC---C-CCCCCCccCcCCCcCCCCccc-cC
Q 035522 462 SV---RRIPKLIVSENNLELENSTSS---E-NAPPPQAKPFKGNKGKQRKIV-TR 508 (509)
Q Consensus 462 ~~---~~l~~L~ls~N~l~~~~~ip~---~-~~~~l~~l~l~~N~~lc~~~~-~~ 508 (509)
.| .+|+.|++++|++++ +|+ . .+++++.+++.|||+.|+|.. .|
T Consensus 579 ~~~~l~~L~~L~L~~N~l~~---~~~~~~~~~~~~L~~l~l~~N~~~c~c~~~~~ 630 (680)
T 1ziw_A 579 VFNNQVSLKSLNLQKNLITS---VEKKVFGPAFRNLTELDMRFNPFDCTCESIAW 630 (680)
T ss_dssp TTTTCTTCCEEECTTSCCCB---CCHHHHHHHHTTCSEEECTTCCCCBCCCCCSS
T ss_pred HhCCCCCCCEEECCCCcCCc---cChhHhcccccccCEEEccCCCcccCCccHHH
Confidence 43 456688888888877 554 2 578899999999999999985 55
No 10
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.9e-47 Score=404.14 Aligned_cols=386 Identities=24% Similarity=0.319 Sum_probs=346.0
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcC------------------------------------------
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHL------------------------------------------ 143 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l------------------------------------------ 143 (509)
.+++.|+|+++. +.|.+|.+++++++|++|++++|.+
T Consensus 81 ~~V~~L~L~~~~-l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~ 159 (636)
T 4eco_A 81 GRVTGLSLEGFG-ASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFS 159 (636)
T ss_dssp CCEEEEECTTSC-CEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEEecCcc-cCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHH
Confidence 478999999999 9999999999999999999998843
Q ss_pred ------------------------------------CccCCccccCCCCCcEEeccCCcCCCc-----------------
Q 035522 144 ------------------------------------TGTIPSEIGSSRNLFQLDLSINILNGS----------------- 170 (509)
Q Consensus 144 ------------------------------------~~~~~~~l~~l~~L~~L~L~~n~~~~~----------------- 170 (509)
++ +|..++++++|++|++++|.+++.
T Consensus 160 ~~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ 238 (636)
T 4eco_A 160 DLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY 238 (636)
T ss_dssp HHHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred HHHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence 34 788899999999999999999985
Q ss_pred CCccCC--CCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCc-Ccc-cCCcccCCC------CCCcEEECcCCCCC
Q 035522 171 IPLEIG--NLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNK-LSG-RLPREVGNL------KILELLYLDSNNLT 240 (509)
Q Consensus 171 ~p~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~l------~~L~~L~l~~n~l~ 240 (509)
+|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|. +++ .+|..++.+ ++|++|++++|.++
T Consensus 239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~ 318 (636)
T 4eco_A 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK 318 (636)
T ss_dssp TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence 999999 99999999999999999999999999999999999998 988 788888776 99999999999999
Q ss_pred CCCch--hhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCC-CCEEECcCCCCCCCCcc
Q 035522 241 GPIPS--TLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNL-LEILDLSHNRLDGPIPS 317 (509)
Q Consensus 241 ~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 317 (509)
.+|. .+..+++|++|++++|.+.|.+| .+..+++|+.|++++|.++ .+|..+..+++ |++|++++|.++ .+|.
T Consensus 319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~ 394 (636)
T 4eco_A 319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN 394 (636)
T ss_dssp -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence 8888 89999999999999999998888 8899999999999999998 77888999999 999999999999 7888
Q ss_pred ccCCCC--CcCeeeCccccCCccCccccc-------CCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCc
Q 035522 318 TIGNLT--NLTSLVLSSNQLSGLLPREVG-------NLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIP 388 (509)
Q Consensus 318 ~~~~l~--~L~~L~ls~n~l~~~~~~~~~-------~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 388 (509)
.+...+ +|++|++++|.+++..|..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.++ .+|
T Consensus 395 ~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i~ 473 (636)
T 4eco_A 395 IFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EIP 473 (636)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BCC
T ss_pred hhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-CcC
Confidence 877655 899999999999998888888 7889999999999999543344566899999999999999 555
Q ss_pred cc-cc-------CCccCceeeeecccCCCcCccccc--CCCcCCeEecccCcCCcCChhhccCCCCCCEEeC------cC
Q 035522 389 PE-LM-------NCSQLQNLVLSHNTLSGIFPSEIG--NLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDL------SK 452 (509)
Q Consensus 389 ~~-~~-------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~l------s~ 452 (509)
.. +. ++++|++|++++|+++ .+|..+. .+++|++|++++|++.+ +|..+..+++|++|++ ++
T Consensus 474 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~ 551 (636)
T 4eco_A 474 KNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQG 551 (636)
T ss_dssp SSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTC
T ss_pred HHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccccc
Confidence 43 32 2338999999999999 6788886 99999999999999997 8999999999999999 56
Q ss_pred CcCcccCCccc---cCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCC
Q 035522 453 NNLSGVVPASV---RRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQR 503 (509)
Q Consensus 453 N~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~ 503 (509)
|++.+.+|..+ .+|++|++++|++. .+|...+++++.+++++||..|-
T Consensus 552 N~l~~~~p~~l~~l~~L~~L~Ls~N~l~---~ip~~~~~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 552 NRTLREWPEGITLCPSLTQLQIGSNDIR---KVNEKITPNISVLDIKDNPNISI 602 (636)
T ss_dssp CBCCCCCCTTGGGCSSCCEEECCSSCCC---BCCSCCCTTCCEEECCSCTTCEE
T ss_pred CcccccChHHHhcCCCCCEEECCCCcCC---ccCHhHhCcCCEEECcCCCCccc
Confidence 78888999766 45669999999994 59997779999999999998874
No 11
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2.1e-46 Score=392.99 Aligned_cols=418 Identities=20% Similarity=0.179 Sum_probs=334.4
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..+++.|+++++.+++.. +..|.++++|++|++++|. +.+..+..|.++++|++|++++|.+.+..|..|+++++
T Consensus 27 ~~~l~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 101 (570)
T 2z63_A 27 PFSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSS 101 (570)
T ss_dssp CSSCCEEECCSCCCCEEC----TTTTTTCSSCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTT
T ss_pred cccccEEEccCCccCccC----hhHhhCCCCceEEECCCCc-CCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccc
Confidence 457999999999998866 7789999999999999999 78777888999999999999999999888889999999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCC----cE
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDG-LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL----EL 231 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~ 231 (509)
|++|++++|.+++..+..++++++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..++.+++| ++
T Consensus 102 L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~ 181 (570)
T 2z63_A 102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS 181 (570)
T ss_dssp CCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCE
T ss_pred cccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhh
Confidence 9999999999986555579999999999999999987 468899999999999999999987777777777777 78
Q ss_pred EECcCCCCCCCCchhhhCCCCcceeecccC--------------------------------------------------
Q 035522 232 LYLDSNNLTGPIPSTLYHLNPLIEWYLAYN-------------------------------------------------- 261 (509)
Q Consensus 232 L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n-------------------------------------------------- 261 (509)
+++++|.+.+..+..+... +|+++++++|
T Consensus 182 L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 182 LDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred cccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 8888887775544444332 4444444443
Q ss_pred --------cCCCCCchhccCCCCcceeecccccccCcchhhhcC--------------------CCCCCEEECcCCCCCC
Q 035522 262 --------NLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGY--------------------LNLLEILDLSHNRLDG 313 (509)
Q Consensus 262 --------~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~--------------------~~~L~~L~l~~n~l~~ 313 (509)
.+.+..+..+..+++|+.|++++|.++ .+|..+.. +++|+.|++++|.+.+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~~~ 339 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 339 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBSCC
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcccc
Confidence 122223334444455555555555554 23333333 4455555555555443
Q ss_pred CCccccCCCCCcCeeeCccccCCccC--cccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCc-cc
Q 035522 314 PIPSTIGNLTNLTSLVLSSNQLSGLL--PREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIP-PE 390 (509)
Q Consensus 314 ~~~~~~~~l~~L~~L~ls~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~ 390 (509)
..+. ..+++|++|++++|.+++.. +..+..+++|++|++++|.+.+. +..+..+++|++|++++|.+.+..+ ..
T Consensus 340 ~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 340 AFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp BCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCT
T ss_pred cccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccccc-cccccccCCCCEEEccCCccccccchhh
Confidence 3332 56788999999999887553 66778899999999999998854 4448899999999999999987655 56
Q ss_pred ccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC-cCChhhccCCCCCCEEeCcCCcCcccCCcccc---CC
Q 035522 391 LMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN-GTIPSQLGNIPNISAVDLSKNNLSGVVPASVR---RI 466 (509)
Q Consensus 391 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l 466 (509)
+..+++|++|++++|.+.+..|..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+. +|
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 496 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred hhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCC
Confidence 889999999999999999888999999999999999999997 57899999999999999999999998887654 56
Q ss_pred CeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCcccc
Q 035522 467 PKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 467 ~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~~~ 507 (509)
++|++++|++++ +|+ ..+++++.+++.+||+.|.|+..
T Consensus 497 ~~L~l~~n~l~~---~~~~~~~~l~~L~~L~l~~N~~~~~~~~~ 537 (570)
T 2z63_A 497 QVLNMASNQLKS---VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 537 (570)
T ss_dssp CEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CEEeCCCCcCCC---CCHHHhhcccCCcEEEecCCcccCCCcch
Confidence 799999999998 554 67789999999999999999853
No 12
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=3e-46 Score=389.97 Aligned_cols=410 Identities=19% Similarity=0.158 Sum_probs=324.4
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
.++++|+++++.+.+.. +..|..+++|++|++++|. +.+..|..|..+++|++|++++|.+.+..|..|+++++|
T Consensus 26 ~~L~~L~Ls~n~l~~~~----~~~~~~l~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 26 AAMKSLDLSFNKITYIG----HGDLRACANLQVLILKSSR-INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp TTCCEEECCSSCCCEEC----SSTTSSCTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCccEEECcCCccCccC----hhhhhcCCcccEEECCCCC-cCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 47999999999998876 7789999999999999999 888888899999999999999999998877789999999
Q ss_pred cEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCC-cccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECc
Q 035522 158 FQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLI-PSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLD 235 (509)
Q Consensus 158 ~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 235 (509)
++|++++|.+++ ..|..+.++++|++|++++|.+.+.+ +..+.++++|++|++++|.+++..|..+..+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999999986 35778999999999999999844444 4679999999999999999998899999999999999999
Q ss_pred CCCCCCCCchh-hhCCCCcceeecccCcCCCCC--c-hhccCCCCcceeecccccccCcchhh-----------------
Q 035522 236 SNNLTGPIPST-LYHLNPLIEWYLAYNNLVGPL--P-KEVGNMKNLKILLLHRNNLTGPISST----------------- 294 (509)
Q Consensus 236 ~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~~~~--~-~~l~~~~~L~~L~L~~n~~~~~~~~~----------------- 294 (509)
.|.+. .++.. +..+++|++|++++|.+++.. + .....+++|+.|++++|.+++..+..
T Consensus 181 ~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~ 259 (549)
T 2z81_A 181 LSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFD 259 (549)
T ss_dssp CSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEE
T ss_pred cCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccc
Confidence 99876 34444 456899999999999988642 1 11223445555555554443211110
Q ss_pred ----------------------------------------------hcCCCCCCEEECcCCCCCCCCcccc-CCCCCcCe
Q 035522 295 ----------------------------------------------IGYLNLLEILDLSHNRLDGPIPSTI-GNLTNLTS 327 (509)
Q Consensus 295 ----------------------------------------------~~~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~ 327 (509)
+...++|+.|++++|.++ .+|..+ ..+++|++
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 260 DCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEF 338 (549)
T ss_dssp SCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCE
T ss_pred cccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccE
Confidence 112245667777777665 455444 46888888
Q ss_pred eeCccccCCccCcc---cccCCCCCCEEEcCCCcCCCCCc--cccCCCCCCCEEECcCCcCcccCcccccCCccCceeee
Q 035522 328 LVLSSNQLSGLLPR---EVGNLKYLDSRSLDGNNLIGPIP--PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVL 402 (509)
Q Consensus 328 L~ls~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L 402 (509)
|++++|.+++..+. .++.+++|++|++++|++++..+ ..+..+++|++|++++|+++ .+|..+..+++|++|++
T Consensus 339 L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~L 417 (549)
T 2z81_A 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNL 417 (549)
T ss_dssp EECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEEC
T ss_pred EEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEEC
Confidence 99988888876532 36778888999999888875422 44777888999999999888 57777788888999999
Q ss_pred ecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc--cccCCCeEecccCccccCC
Q 035522 403 SHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA--SVRRIPKLIVSENNLELEN 480 (509)
Q Consensus 403 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~--~~~~l~~L~ls~N~l~~~~ 480 (509)
++|.+.+ +|..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. .+.++++|++++|++++
T Consensus 418 s~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~~~~l~~L~~L~Ls~N~l~~-- 487 (549)
T 2z81_A 418 SSTGIRV-VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPDASLFPVLLVMKISRNQLKS-- 487 (549)
T ss_dssp TTSCCSC-CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCCGGGCTTCCEEECCSSCCCC--
T ss_pred CCCCccc-ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCCcccCccCCEEecCCCccCC--
Confidence 9988873 44333 368899999999888543 57899999999999998 4554 46788899999999998
Q ss_pred CCCC--CCCCCCCccCcCCCcCCCCcc
Q 035522 481 STSS--ENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 481 ~ip~--~~~~~l~~l~l~~N~~lc~~~ 505 (509)
..|. ..+++++.+++++||+.|.|+
T Consensus 488 ~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 488 VPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp CCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCcccCEEEecCCCccCCCc
Confidence 4443 678899999999999999998
No 13
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-45 Score=379.90 Aligned_cols=387 Identities=23% Similarity=0.205 Sum_probs=243.8
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 185 (509)
++|++|++++|. +.+..|..|.++++|++|++++|.+.+..|..|+++++|++|++++|.++ .+|.. .+++|++|+
T Consensus 21 ~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~ 96 (520)
T 2z7x_B 21 QKTTILNISQNY-ISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLD 96 (520)
T ss_dssp TTCSEEECCSSC-CCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEE
T ss_pred ccccEEECCCCc-ccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEe
Confidence 455555555555 44444444555555555555555555444455555555555555555554 33333 445555555
Q ss_pred CcCCCCCC-CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCC--cEEECcCCCC--CCCCchhhh------------
Q 035522 186 LQGNKLDG-LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL--ELLYLDSNNL--TGPIPSTLY------------ 248 (509)
Q Consensus 186 L~~n~~~~-~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~------------ 248 (509)
+++|.+++ .+|..++++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+.
T Consensus 97 L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~ 173 (520)
T 2z7x_B 97 LSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFP 173 (520)
T ss_dssp CCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECC
T ss_pred ccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceEEEEec
Confidence 55555544 234445555555555555555443 123334444 5555555544 333333333
Q ss_pred --------------CCCCcceeecccCc-------CCCCCchhccCCCCcceeecccccccCcchhhh---cCCCCCCEE
Q 035522 249 --------------HLNPLIEWYLAYNN-------LVGPLPKEVGNMKNLKILLLHRNNLTGPISSTI---GYLNLLEIL 304 (509)
Q Consensus 249 --------------~~~~L~~L~l~~n~-------~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~---~~~~~L~~L 304 (509)
.+++|+.+++++|. +.+.++ .+..+++|+.|++++|.+++..+..+ ...++|++|
T Consensus 174 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L 252 (520)
T 2z7x_B 174 TNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYF 252 (520)
T ss_dssp SSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEE
T ss_pred cCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhCcccEE
Confidence 34555566665554 222222 33444444444444443332111100 012345555
Q ss_pred ECcCCCCCCCCcccc-----CCCC--------------------------CcCeeeCccccCCccCcccccCCCCCCEEE
Q 035522 305 DLSHNRLDGPIPSTI-----GNLT--------------------------NLTSLVLSSNQLSGLLPREVGNLKYLDSRS 353 (509)
Q Consensus 305 ~l~~n~l~~~~~~~~-----~~l~--------------------------~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~ 353 (509)
++++|.+++.+|..+ ..++ +|+.|++++|.+.... .+..+++|++|+
T Consensus 253 ~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~ 330 (520)
T 2z7x_B 253 SISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLD 330 (520)
T ss_dssp EEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEE
T ss_pred EeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEE
Confidence 555555444444444 3333 4556666666554321 126789999999
Q ss_pred cCCCcCCCCCccccCCCCCCCEEECcCCcCcc--cCcccccCCccCceeeeecccCCCcCcc-cccCCCcCCeEecccCc
Q 035522 354 LDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSS--SIPPELMNCSQLQNLVLSHNTLSGIFPS-EIGNLTHLRQLDLSHNF 430 (509)
Q Consensus 354 L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~ 430 (509)
+++|.+.+.+|..+..+++|++|++++|++++ .+|..+..+++|++|++++|.+.+.+|. .+..+++|++|++++|+
T Consensus 331 Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~ 410 (520)
T 2z7x_B 331 FSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNI 410 (520)
T ss_dssp CCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSC
T ss_pred eECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCC
Confidence 99999999889999999999999999999996 4567788999999999999999975665 48889999999999999
Q ss_pred CCcCChhhccCCCCCCEEeCcCCcCcccCCcc---ccCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCc
Q 035522 431 INGTIPSQLGNIPNISAVDLSKNNLSGVVPAS---VRRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRK 504 (509)
Q Consensus 431 l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~---~~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~ 504 (509)
+++.+|..+. ++|++|++++|+++ .+|.. +.++++|++++|++++ +|. ..+++++.+++++||+.|.|
T Consensus 411 l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~---l~~~~~~~l~~L~~L~l~~N~~~c~c 484 (520)
T 2z7x_B 411 LTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS---VPDGIFDRLTSLQKIWLHTNPWDCSC 484 (520)
T ss_dssp CCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC---CCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred CCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc---cCHHHhccCCcccEEECcCCCCcccC
Confidence 9988877664 79999999999998 66654 4567799999999997 876 46788999999999999999
Q ss_pred cccC
Q 035522 505 IVTR 508 (509)
Q Consensus 505 ~~~~ 508 (509)
++.|
T Consensus 485 ~~~~ 488 (520)
T 2z7x_B 485 PRID 488 (520)
T ss_dssp HHHH
T ss_pred CchH
Confidence 8765
No 14
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.6e-45 Score=390.11 Aligned_cols=384 Identities=22% Similarity=0.289 Sum_probs=336.9
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEc-cCCcCCcc--------------------------------------
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNL-SQNHLTGT-------------------------------------- 146 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L-~~~~l~~~-------------------------------------- 146 (509)
.+++.|+|+++. +.|.+|.+++++++|++|+| ++|.+.|.
T Consensus 323 ~~V~~L~Ls~~~-L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s 401 (876)
T 4ecn_A 323 GRVTGLSLAGFG-AKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLS 401 (876)
T ss_dssp SCEEEEECTTTC-CEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSC
T ss_pred CCEEEEECccCC-CCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhh
Confidence 578999999999 99999999999999999999 76654332
Q ss_pred --------------------------------------CCccccCCCCCcEEeccCCcCCC-----------------cC
Q 035522 147 --------------------------------------IPSEIGSSRNLFQLDLSINILNG-----------------SI 171 (509)
Q Consensus 147 --------------------------------------~~~~l~~l~~L~~L~L~~n~~~~-----------------~~ 171 (509)
+|..|+++++|++|+|++|.+++ .+
T Consensus 402 ~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 402 DLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 78889999999999999999998 38
Q ss_pred CccCC--CCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCc-Ccc-cCCcccCC-------CCCCcEEECcCCCCC
Q 035522 172 PLEIG--NLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNK-LSG-RLPREVGN-------LKILELLYLDSNNLT 240 (509)
Q Consensus 172 p~~~~--~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~-~~~~~l~~-------l~~L~~L~l~~n~l~ 240 (509)
|..++ ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++. +++|++|++++|.++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 99988 99999999999999999999999999999999999998 887 67765554 459999999999999
Q ss_pred CCCch--hhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCC-CCEEECcCCCCCCCCcc
Q 035522 241 GPIPS--TLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNL-LEILDLSHNRLDGPIPS 317 (509)
Q Consensus 241 ~~~~~--~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~-L~~L~l~~n~l~~~~~~ 317 (509)
.+|. .+..+++|++|++++|.++ .+| .+..+++|+.|++++|.++ .+|..+..+++ |+.|++++|.++ .+|.
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred -ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 8888 8999999999999999999 777 8999999999999999999 78888999999 999999999998 7888
Q ss_pred ccCCCCC--cCeeeCccccCCccCcccc---c--CCCCCCEEEcCCCcCCCCCcccc-CCCCCCCEEECcCCcCcccCcc
Q 035522 318 TIGNLTN--LTSLVLSSNQLSGLLPREV---G--NLKYLDSRSLDGNNLIGPIPPTI-GYLTNLTSLNLGYNQLSSSIPP 389 (509)
Q Consensus 318 ~~~~l~~--L~~L~ls~n~l~~~~~~~~---~--~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~ 389 (509)
.+...+. |+.|++++|.+.+.+|... . .+++|+.|++++|.+. .+|..+ ..+++|+.|++++|.++ .+|.
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~ 714 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMT-SIPE 714 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCS-CCCT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCC-ccCh
Confidence 8777654 9999999999988665322 2 3458999999999999 556554 48899999999999999 5555
Q ss_pred ccc--------CCccCceeeeecccCCCcCccccc--CCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcC------C
Q 035522 390 ELM--------NCSQLQNLVLSHNTLSGIFPSEIG--NLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK------N 453 (509)
Q Consensus 390 ~~~--------~~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~------N 453 (509)
.+. ++++|+.|+|++|++. .+|..+. .+++|+.|+|++|.+.+ +|..+..+++|+.|++++ |
T Consensus 715 ~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N 792 (876)
T 4ecn_A 715 NSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGN 792 (876)
T ss_dssp TSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCC
T ss_pred HHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccc
Confidence 433 2349999999999999 7788887 99999999999999996 898999999999999976 7
Q ss_pred cCcccCCccc---cCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCC
Q 035522 454 NLSGVVPASV---RRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQ 502 (509)
Q Consensus 454 ~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc 502 (509)
++.+.+|..+ .+|+.|++++|++ + .+|...+++|+.+++++|+...
T Consensus 793 ~l~~~ip~~l~~L~~L~~L~Ls~N~L-~--~Ip~~l~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 793 RILRQWPTGITTCPSLIQLQIGSNDI-R--KVDEKLTPQLYILDIADNPNIS 841 (876)
T ss_dssp BCCCCCCTTGGGCSSCCEEECCSSCC-C--BCCSCCCSSSCEEECCSCTTCE
T ss_pred cccccChHHHhcCCCCCEEECCCCCC-C--ccCHhhcCCCCEEECCCCCCCc
Confidence 8888999765 4566999999999 5 6999877999999999998753
No 15
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=7.4e-44 Score=376.36 Aligned_cols=393 Identities=20% Similarity=0.170 Sum_probs=334.1
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..++++|+++++.+.+.. +..|.++++|++|++++|. +.+..|..|+++++|++|++++|.+.+..+..++++++
T Consensus 55 l~~L~~L~Ls~n~l~~i~----~~~~~~l~~L~~L~Ls~n~-l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 129 (606)
T 3vq2_A 55 FSELQWLDLSRCEIETIE----DKAWHGLHHLSNLILTGNP-IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLIT 129 (606)
T ss_dssp CTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCC-CCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTT
T ss_pred CccCcEEeCCCCcccccC----HHHhhchhhcCEeECCCCc-ccccChhhcCCcccCCEEEccCCccccccccccCCCCC
Confidence 468999999999988766 7789999999999999999 78777899999999999999999999777788999999
Q ss_pred CcEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCC----EEeccCCcCcc--------------
Q 035522 157 LFQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLT----GLNLSLNKLSG-------------- 217 (509)
Q Consensus 157 L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~----~L~l~~n~l~~-------------- 217 (509)
|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++|+ +|++++|.+++
T Consensus 130 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L 209 (606)
T 3vq2_A 130 LKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHEL 209 (606)
T ss_dssp CCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred CCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccCCCcceeCcccccCceeeee
Confidence 9999999999986 5788999999999999999988776555443332221 23333332221
Q ss_pred --------------------------------------------------------------------------------
Q 035522 218 -------------------------------------------------------------------------------- 217 (509)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (509)
T Consensus 210 ~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~ 289 (606)
T 3vq2_A 210 TLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSA 289 (606)
T ss_dssp EEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSE
T ss_pred eccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheeccccccccccccccccCCCCCE
Confidence
Q ss_pred ---------cCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeeccccccc
Q 035522 218 ---------RLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288 (509)
Q Consensus 218 ---------~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 288 (509)
.+| .+..+++|++|++++|.+ +.+| .+ .+++|++|++++|...+.. .+..+++|++|++++|.++
T Consensus 290 L~l~~~~~~~l~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 363 (606)
T 3vq2_A 290 MSLAGVSIKYLE-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALS 363 (606)
T ss_dssp EEEESCCCCCCC-CCCTTCCCSEEEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEE
T ss_pred EEecCccchhhh-hccccccCCEEEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccC
Confidence 122 456667888999999988 5777 45 9999999999999665443 5678999999999999998
Q ss_pred Cc--chhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCc-ccccCCCCCCEEEcCCCcCCCCCcc
Q 035522 289 GP--ISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLP-REVGNLKYLDSRSLDGNNLIGPIPP 365 (509)
Q Consensus 289 ~~--~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~ 365 (509)
+. .+..+..+++|++|++++|.+++ +|..+..+++|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|.
T Consensus 364 ~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 442 (606)
T 3vq2_A 364 FSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDG 442 (606)
T ss_dssp EEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTT
T ss_pred CCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchh
Confidence 65 37788999999999999999884 56788999999999999999998777 6789999999999999999998999
Q ss_pred ccCCCCCCCEEECcCCcCcc-cCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCC
Q 035522 366 TIGYLTNLTSLNLGYNQLSS-SIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPN 444 (509)
Q Consensus 366 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 444 (509)
.+..+++|++|++++|.+++ .+|..+..+++|++|++++|.+++..|..+..+++|++|++++|++.+..|..+..+++
T Consensus 443 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 522 (606)
T 3vq2_A 443 IFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYS 522 (606)
T ss_dssp TTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTT
T ss_pred hhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCc
Confidence 99999999999999999997 47888999999999999999999988999999999999999999999888999999999
Q ss_pred CCEEeCcCCcCcccCCccc---c-CCCeEecccCccccCCCCCC
Q 035522 445 ISAVDLSKNNLSGVVPASV---R-RIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 445 L~~L~ls~N~l~~~~~~~~---~-~l~~L~ls~N~l~~~~~ip~ 484 (509)
|++|++++|+++. +|..+ . ++++|++++|++.+ ..+.
T Consensus 523 L~~L~l~~N~l~~-~p~~~~~l~~~L~~l~l~~N~~~c--~c~~ 563 (606)
T 3vq2_A 523 LSTLDCSFNRIET-SKGILQHFPKSLAFFNLTNNSVAC--ICEH 563 (606)
T ss_dssp CCEEECTTSCCCC-EESCGGGSCTTCCEEECCSCCCCC--SSTT
T ss_pred CCEEECCCCcCcc-cCHhHhhhcccCcEEEccCCCccc--CCcc
Confidence 9999999999984 55433 3 47899999999998 5554
No 16
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=2.1e-42 Score=370.17 Aligned_cols=183 Identities=18% Similarity=0.127 Sum_probs=156.9
Q ss_pred EEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEe
Q 035522 82 EISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLD 161 (509)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~ 161 (509)
.++.++++++.. +..+. +++++|++++|. +.+..+..|.++++|++|++++|.+.+..|..|+++++|++|+
T Consensus 8 ~~~cs~~~L~~i-----p~~~~--~~l~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~ 79 (680)
T 1ziw_A 8 VADCSHLKLTQV-----PDDLP--TNITVLNLTHNQ-LRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLN 79 (680)
T ss_dssp EEECCSSCCSSC-----CSCSC--TTCSEEECCSSC-CCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEE
T ss_pred eeECCCCCcccc-----ccccC--CCCcEEECCCCC-CCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEE
Confidence 355566665542 33333 789999999999 7777777899999999999999999999999999999999999
Q ss_pred ccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC
Q 035522 162 LSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241 (509)
Q Consensus 162 L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 241 (509)
+++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++
T Consensus 80 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 159 (680)
T 1ziw_A 80 LQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQA 159 (680)
T ss_dssp CCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCC
T ss_pred CCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccc
Confidence 99999996555579999999999999999998888889999999999999999998888889999999999999999998
Q ss_pred CCchhhh--CCCCcceeecccCcCCCCCchhcc
Q 035522 242 PIPSTLY--HLNPLIEWYLAYNNLVGPLPKEVG 272 (509)
Q Consensus 242 ~~~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~ 272 (509)
..+..+. .+++|++|++++|.+++..|..+.
T Consensus 160 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~ 192 (680)
T 1ziw_A 160 LKSEELDIFANSSLKKLELSSNQIKEFSPGCFH 192 (680)
T ss_dssp BCHHHHGGGTTCEESEEECTTCCCCCBCTTGGG
T ss_pred cCHHHhhccccccccEEECCCCcccccChhhhh
Confidence 7776654 458899999999988776655443
No 17
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=1.2e-42 Score=379.48 Aligned_cols=318 Identities=23% Similarity=0.151 Sum_probs=235.6
Q ss_pred EEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccC-CccccCCCCCcEE
Q 035522 82 EISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTI-PSEIGSSRNLFQL 160 (509)
Q Consensus 82 ~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L 160 (509)
..+.++++++.. +. -.+++++|++++|. +++..+..|.++++|++|++++|...+.+ |..|.++++|++|
T Consensus 8 ~~dcs~~~L~~v-----P~---lp~~l~~LdLs~N~-i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L 78 (844)
T 3j0a_A 8 IAFYRFCNLTQV-----PQ---VLNTTERLLLSFNY-IRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRIL 78 (844)
T ss_dssp EEEESCCCSSCC-----CS---SCTTCCEEEEESCC-CCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEE
T ss_pred EEEccCCCCCCC-----CC---CCCCcCEEECCCCc-CCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEE
Confidence 455667777653 22 45799999999999 88888999999999999999999666555 7889999999999
Q ss_pred eccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCccc--ccCCCCCCEEeccCCcCcccCC-cccCCCCCCcEEECcCC
Q 035522 161 DLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSS--IGNLTKLTGLNLSLNKLSGRLP-REVGNLKILELLYLDSN 237 (509)
Q Consensus 161 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~l~~n 237 (509)
+|++|.+.+..|..|.++++|++|++++|.+++..+.. +.++++|++|++++|.+.+..+ ..++++++|++|++++|
T Consensus 79 ~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N 158 (844)
T 3j0a_A 79 DLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSN 158 (844)
T ss_dssp ECTTCCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred ECCCCcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCC
Confidence 99999999888999999999999999999999866654 8999999999999999987654 57899999999999999
Q ss_pred CCCCCCchhhhCC--CCcceeecccCcCCCCCchhccCCCC------cceeecccccccCcchhhhc-------------
Q 035522 238 NLTGPIPSTLYHL--NPLIEWYLAYNNLVGPLPKEVGNMKN------LKILLLHRNNLTGPISSTIG------------- 296 (509)
Q Consensus 238 ~l~~~~~~~l~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~------L~~L~L~~n~~~~~~~~~~~------------- 296 (509)
.+++..+..+..+ ++|+.|++++|.+.+..+..+..+++ |+.|++++|.+++..+..+.
T Consensus 159 ~i~~~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l 238 (844)
T 3j0a_A 159 QIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLIL 238 (844)
T ss_dssp CCCCCCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEEC
T ss_pred cCCeeCHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceec
Confidence 9998888888776 77888888888777766655554443 67777776655433322211
Q ss_pred -----------------------C--CCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCE
Q 035522 297 -----------------------Y--LNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDS 351 (509)
Q Consensus 297 -----------------------~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~ 351 (509)
. .++|+.|++++|.+.+..+..+..+++|+.|++++|.+++..+..+..+++|++
T Consensus 239 ~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~ 318 (844)
T 3j0a_A 239 AHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQV 318 (844)
T ss_dssp CSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCE
T ss_pred ccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCE
Confidence 1 145666666666666555556666666666666666666555556666666666
Q ss_pred EEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCC
Q 035522 352 RSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 408 (509)
Q Consensus 352 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 408 (509)
|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.++
T Consensus 319 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~ 375 (844)
T 3j0a_A 319 LNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375 (844)
T ss_dssp EEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSC
T ss_pred EECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCC
Confidence 666666666555556666666666666666665555555555566666666655544
No 18
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7e-43 Score=366.27 Aligned_cols=393 Identities=21% Similarity=0.239 Sum_probs=322.2
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..++++|+++++.+.+.. +..|.++++|++|++++|. +.+..|..|..+++|++|++++|.+.+..+..++++++
T Consensus 51 l~~L~~L~Ls~n~i~~i~----~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 125 (570)
T 2z63_A 51 FPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 125 (570)
T ss_dssp CSSCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTT
T ss_pred CCCceEEECCCCcCCccC----cccccCchhCCEEeCcCCc-CCccCHhhhcCccccccccccccccccCCCcccccccc
Confidence 467999999999988765 7789999999999999999 88777889999999999999999999666667999999
Q ss_pred CcEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC----CEEeccCCcCcccCCcccCC------
Q 035522 157 LFQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL----TGLNLSLNKLSGRLPREVGN------ 225 (509)
Q Consensus 157 L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~------ 225 (509)
|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..+..+++| +++++++|.+.+..+..+..
T Consensus 126 L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~~~~~~~~~~~L~~L 205 (570)
T 2z63_A 126 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKL 205 (570)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEE
T ss_pred ccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCceecCHHHhccCcceeE
Confidence 9999999999986 478999999999999999999998888888888777 78888888877655554443
Q ss_pred ---------------------------------------------------------------------------CCCCc
Q 035522 226 ---------------------------------------------------------------------------LKILE 230 (509)
Q Consensus 226 ---------------------------------------------------------------------------l~~L~ 230 (509)
+++|+
T Consensus 206 ~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~ 285 (570)
T 2z63_A 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVS 285 (570)
T ss_dssp EEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCS
T ss_pred ecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcCccc
Confidence 33444
Q ss_pred EEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCC
Q 035522 231 LLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNR 310 (509)
Q Consensus 231 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 310 (509)
+|++++|.+. .+|..+..+ +|++|++++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|.
T Consensus 286 ~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~ 358 (570)
T 2z63_A 286 SFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNG 358 (570)
T ss_dssp EEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSC
T ss_pred EEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCc
Confidence 4444444443 234444444 4455555555444 2222 2456666666666666544433 678999999999999
Q ss_pred CCCCC--ccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCc-cccCCCCCCCEEECcCCcCcccC
Q 035522 311 LDGPI--PSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIP-PTIGYLTNLTSLNLGYNQLSSSI 387 (509)
Q Consensus 311 l~~~~--~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~ 387 (509)
+++.. +..+..+++|++|++++|.+.+..+. +..+++|+.|++++|.+.+..+ ..+..+++|++|++++|.+.+..
T Consensus 359 l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 437 (570)
T 2z63_A 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437 (570)
T ss_dssp CBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECC
T ss_pred cCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccc
Confidence 98653 67788999999999999999865544 8999999999999999987665 56889999999999999999888
Q ss_pred cccccCCccCceeeeecccCC-CcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccc---
Q 035522 388 PPELMNCSQLQNLVLSHNTLS-GIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV--- 463 (509)
Q Consensus 388 ~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~--- 463 (509)
+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|++++..|..+..+++|++|++++|++++..+..+
T Consensus 438 ~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 517 (570)
T 2z63_A 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRL 517 (570)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTC
T ss_pred hhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcc
Confidence 989999999999999999997 5788899999999999999999998889999999999999999999999877655
Q ss_pred cCCCeEecccCccccCCCCCC
Q 035522 464 RRIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 464 ~~l~~L~ls~N~l~~~~~ip~ 484 (509)
.++++|++++|++++ ..|.
T Consensus 518 ~~L~~L~l~~N~~~~--~~~~ 536 (570)
T 2z63_A 518 TSLQKIWLHTNPWDC--SCPR 536 (570)
T ss_dssp TTCCEEECCSSCBCC--CTTT
T ss_pred cCCcEEEecCCcccC--CCcc
Confidence 566799999999999 7775
No 19
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.1e-41 Score=346.99 Aligned_cols=354 Identities=20% Similarity=0.161 Sum_probs=255.8
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccC-CccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTI-PSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~-~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 184 (509)
++|++|++++|. +.+..|..|.++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..|.++++|++|
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 108 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVL 108 (455)
T ss_dssp TTCCEEECCSSC-CCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEE
T ss_pred CccCEEEecCCc-cCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEE
Confidence 688999999988 77777888889999999999998887444 5678889999999999999887778888889999999
Q ss_pred ECcCCCCCCCCccc--ccCCCCCCEEeccCCcCcccCCcc-cCCCCCCcEEECcCCCCCCCCchhhhCC--CCcceeecc
Q 035522 185 MLQGNKLDGLIPSS--IGNLTKLTGLNLSLNKLSGRLPRE-VGNLKILELLYLDSNNLTGPIPSTLYHL--NPLIEWYLA 259 (509)
Q Consensus 185 ~L~~n~~~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~l~~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~ 259 (509)
++++|.+++..+.. +.++++|++|++++|.+.+..|.. +.++++|++|++++|.+.+..+..+..+ .+++.++++
T Consensus 109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~ 188 (455)
T 3v47_A 109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLS 188 (455)
T ss_dssp ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECT
T ss_pred eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhccccccccccccc
Confidence 99999888755554 888899999999999988776765 7888999999999998888777777665 678888998
Q ss_pred cCcCCCCCchh--------ccCCCCcceeecccccccCcchhhhcCC---CCCCEEECcCCCCCCCCc----------cc
Q 035522 260 YNNLVGPLPKE--------VGNMKNLKILLLHRNNLTGPISSTIGYL---NLLEILDLSHNRLDGPIP----------ST 318 (509)
Q Consensus 260 ~n~~~~~~~~~--------l~~~~~L~~L~L~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~----------~~ 318 (509)
+|.+.+..+.. +..+++|+.|++++|.+++..+..+... ++|+.|++++|...+... ..
T Consensus 189 ~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~ 268 (455)
T 3v47_A 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFT 268 (455)
T ss_dssp TCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTT
T ss_pred cCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhhccCcccc
Confidence 88887654432 2356789999999998887777666443 788999998886543211 01
Q ss_pred cC--CCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCcc
Q 035522 319 IG--NLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 396 (509)
Q Consensus 319 ~~--~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 396 (509)
+. ..++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++
T Consensus 269 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 348 (455)
T 3v47_A 269 FKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK 348 (455)
T ss_dssp TGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred cccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence 11 1245666666666666666666666666666666666666555556666666666666666666555556666666
Q ss_pred CceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCC
Q 035522 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 460 (509)
|++|++++|.+.+..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 6666666666665556666666666666666666665444455666666666666666665554
No 20
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.1e-41 Score=358.18 Aligned_cols=421 Identities=20% Similarity=0.161 Sum_probs=309.0
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
..+++|+|++|.+++.. +.+|.++++|++|+|++|. +++..+.+|.++++|++|+|++|++++..+..|.++++|
T Consensus 52 ~~~~~LdLs~N~i~~l~----~~~f~~l~~L~~L~Ls~N~-i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L 126 (635)
T 4g8a_A 52 FSTKNLDLSFNPLRHLG----SYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 126 (635)
T ss_dssp TTCCEEECTTSCCCEEC----TTTTTTCTTCCEEECTTCC-CCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTC
T ss_pred cCCCEEEeeCCCCCCCC----HHHHhCCCCCCEEECCCCc-CCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCC
Confidence 57899999999998765 7789999999999999999 777777789999999999999999997777789999999
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCC-CcccccCCCCCCEEeccCCcCcccCCcccCCCCCC----cEE
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL----ELL 232 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L----~~L 232 (509)
++|++++|.+++..+..|+++++|++|++++|.+.+. .|..+..+++|++|++++|.+++..+..+..++++ ..+
T Consensus 127 ~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~ 206 (635)
T 4g8a_A 127 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL 206 (635)
T ss_dssp CEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred CEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhh
Confidence 9999999999977667799999999999999998764 57788999999999999999987777666544332 345
Q ss_pred ECcCCCCCCCCchh------------------------hhCCCCcceee-------------------------------
Q 035522 233 YLDSNNLTGPIPST------------------------LYHLNPLIEWY------------------------------- 257 (509)
Q Consensus 233 ~l~~n~l~~~~~~~------------------------l~~~~~L~~L~------------------------------- 257 (509)
+++.|.+....+.. +..+..++...
T Consensus 207 ~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l 286 (635)
T 4g8a_A 207 DLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEF 286 (635)
T ss_dssp ECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEE
T ss_pred hcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhh
Confidence 66666554211111 11111111111
Q ss_pred --------------------------cccCcCCCCCchhccCCCCcceeecccccccCcchh------------------
Q 035522 258 --------------------------LAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISS------------------ 293 (509)
Q Consensus 258 --------------------------l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~------------------ 293 (509)
+..+.+... ..+.....++.|++.+|.+.+..+.
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~ 364 (635)
T 4g8a_A 287 RLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNA 364 (635)
T ss_dssp EEECCCSCEEECTTTTGGGTTCSEEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCB
T ss_pred hhhhhcccccchhhhhhhhcccccccccccccccc--cccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCC
Confidence 111111100 0122233455555555544322111
Q ss_pred -hhcCCCCCCEEECcCCCCCC--CCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCc-cccCC
Q 035522 294 -TIGYLNLLEILDLSHNRLDG--PIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIP-PTIGY 369 (509)
Q Consensus 294 -~~~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~ 369 (509)
....+++|+.+++++|.+.. ..+..+..+.+|+++++..+.... .+..+..++.|+.+++..+......+ ..+..
T Consensus 365 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 365 FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred cccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccc
Confidence 11234455555555554432 122333344555555555555442 23446677888888888776654433 45678
Q ss_pred CCCCCEEECcCCcCcccCcccccCCccCceeeeecccCC-CcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEE
Q 035522 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS-GIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAV 448 (509)
Q Consensus 370 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L 448 (509)
+++++.++++.|.+.+..+..+..++.++.|++++|.+. +..|..|..+++|++|+|++|++++..|..|..+++|++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L 523 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 523 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred ccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEE
Confidence 899999999999999888888899999999999999754 4577889999999999999999999899999999999999
Q ss_pred eCcCCcCcccCCcccc---CCCeEecccCccccCCCCCC--CCC-CCCCccCcCCCcCCCCccccC
Q 035522 449 DLSKNNLSGVVPASVR---RIPKLIVSENNLELENSTSS--ENA-PPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 449 ~ls~N~l~~~~~~~~~---~l~~L~ls~N~l~~~~~ip~--~~~-~~l~~l~l~~N~~lc~~~~~~ 508 (509)
+|++|+|++..|..+. +|++||+++|++++ ..|. ..+ ++++.+++++||+.|+|.+.|
T Consensus 524 ~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~~ 587 (635)
T 4g8a_A 524 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT--SKKQELQHFPSSLAFLNLTQNDFACTCEHQS 587 (635)
T ss_dssp ECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCB--CCSSCTTCCCTTCCEEECTTCCBCCSGGGHH
T ss_pred ECCCCcCCCCChhHHhCCCCCCEEECCCCcCCC--CCHHHHHhhhCcCCEEEeeCCCCcccCCcHH
Confidence 9999999998887654 66799999999999 3443 334 679999999999999999876
No 21
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=7.3e-42 Score=357.43 Aligned_cols=405 Identities=21% Similarity=0.207 Sum_probs=302.1
Q ss_pred EEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEE
Q 035522 81 VEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQL 160 (509)
Q Consensus 81 ~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L 160 (509)
+.++++++++++ + +..+. +++++|++++|. +.+..+..|.++++|++|++++|.+++..|..|.++++|++|
T Consensus 34 ~~l~ls~~~L~~-i----p~~~~--~~L~~L~Ls~N~-i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 105 (562)
T 3a79_B 34 SMVDYSNRNLTH-V----PKDLP--PRTKALSLSQNS-ISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYL 105 (562)
T ss_dssp CEEECTTSCCCS-C----CTTSC--TTCCEEECCSSC-CCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEE
T ss_pred cEEEcCCCCCcc-C----CCCCC--CCcCEEECCCCC-ccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEE
Confidence 788889888886 3 33333 789999999998 777777789999999999999999998888889999999999
Q ss_pred eccCCcCCCcCCccCCCCCCCCEEECcCCCCCCC-CcccccCCCCCCEEeccCCcCcccCCcccCCCCCC--cEEECcCC
Q 035522 161 DLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKIL--ELLYLDSN 237 (509)
Q Consensus 161 ~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L--~~L~l~~n 237 (509)
++++|.++ .+|.. .+++|++|++++|.+++. .|..+.++++|++|++++|.+.+. .+..+++| ++|++++|
T Consensus 106 ~Ls~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n 179 (562)
T 3a79_B 106 DVSHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLV 179 (562)
T ss_dssp ECTTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEES
T ss_pred ECCCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecc
Confidence 99999988 66665 789999999999998874 457889999999999999988753 34445555 99999999
Q ss_pred CC--CCCCchhhhCCC-CcceeecccCcCCCCCch-hccCCCCcceeecccc----------------------------
Q 035522 238 NL--TGPIPSTLYHLN-PLIEWYLAYNNLVGPLPK-EVGNMKNLKILLLHRN---------------------------- 285 (509)
Q Consensus 238 ~l--~~~~~~~l~~~~-~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~L~~n---------------------------- 285 (509)
.+ ++..|..+..+. ....++++.|.+.+.++. .+..+++|+.+++++|
T Consensus 180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~ 259 (562)
T 3a79_B 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHI 259 (562)
T ss_dssp SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEE
T ss_pred cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCC
Confidence 88 766676666543 111334444444433221 1222333333333332
Q ss_pred cccCc----chhhhcCCCCCCEEECcCCCCCCCCcccc-----CCC--------------------------CCcCeeeC
Q 035522 286 NLTGP----ISSTIGYLNLLEILDLSHNRLDGPIPSTI-----GNL--------------------------TNLTSLVL 330 (509)
Q Consensus 286 ~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~~~~~~-----~~l--------------------------~~L~~L~l 330 (509)
.+.+. ++..+ ..++|++|++++|.+++.+|..+ ..+ .+|++|++
T Consensus 260 ~l~~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 260 ETTWKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp EECHHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEE
T ss_pred cCcHHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEc
Confidence 22211 11111 12356666666666665555443 222 34777777
Q ss_pred ccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCccc--CcccccCCccCceeeeecccCC
Q 035522 331 SSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSS--IPPELMNCSQLQNLVLSHNTLS 408 (509)
Q Consensus 331 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~~~~L~~L~L~~n~l~ 408 (509)
++|.+.... ....+++|++|++++|.+++.+|..+..+++|++|++++|++++. +|..+..+++|+.|++++|.+.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 777664321 126789999999999999998999999999999999999999963 3466889999999999999999
Q ss_pred CcCcc-cccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcc---ccCCCeEecccCccccCCCCCC
Q 035522 409 GIFPS-EIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPAS---VRRIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 409 ~~~~~-~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~---~~~l~~L~ls~N~l~~~~~ip~ 484 (509)
+.+|. .+..+++|++|++++|++++.+|..+. ++|++|++++|+++ .+|.. +.++++|++++|++++ +|.
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~---l~~ 490 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS---VPD 490 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC---CCT
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC---CCH
Confidence 74554 588899999999999999887776554 79999999999998 45543 4567799999999997 876
Q ss_pred ---CCCCCCCccCcCCCcCCCCccccC
Q 035522 485 ---ENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 485 ---~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
..+++++.+++++||+.|.|++.|
T Consensus 491 ~~~~~l~~L~~L~l~~N~~~c~c~~~~ 517 (562)
T 3a79_B 491 GVFDRLTSLQYIWLHDNPWDCTCPGIR 517 (562)
T ss_dssp TSTTTCTTCCCEECCSCCBCCCHHHHH
T ss_pred HHHhcCCCCCEEEecCCCcCCCcchHH
Confidence 567889999999999999998764
No 22
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=7.4e-42 Score=356.79 Aligned_cols=408 Identities=21% Similarity=0.223 Sum_probs=322.8
Q ss_pred CCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCc
Q 035522 66 HCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTG 145 (509)
Q Consensus 66 ~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~ 145 (509)
.|.|.|+ |+. ++++++.. +..+ .++|++|++++|. +++..|..|.++++|++|++++|.+.+
T Consensus 3 ~C~~~~~-c~~---------~~~~l~~i-----p~~~--~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~n~i~~ 64 (549)
T 2z81_A 3 SCDASGV-CDG---------RSRSFTSI-----PSGL--TAAMKSLDLSFNK-ITYIGHGDLRACANLQVLILKSSRINT 64 (549)
T ss_dssp EECTTSE-EEC---------TTSCCSSC-----CSCC--CTTCCEEECCSSC-CCEECSSTTSSCTTCCEEECTTSCCCE
T ss_pred cCCCCce-EEC---------CCCccccc-----cccC--CCCccEEECcCCc-cCccChhhhhcCCcccEEECCCCCcCc
Confidence 4889888 743 33444432 3333 3799999999999 888888899999999999999999998
Q ss_pred cCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCC-CcccccCCCCCCEEeccCCcCcccC-Cccc
Q 035522 146 TIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRL-PREV 223 (509)
Q Consensus 146 ~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~-~~~l 223 (509)
..|..|+++++|++|++++|.+.+..|..|+++++|++|++++|.+++. .|..+.++++|++|++++|.+.+.+ +..+
T Consensus 65 ~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 144 (549)
T 2z81_A 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDF 144 (549)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTT
T ss_pred cChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhh
Confidence 8889999999999999999999977777799999999999999999863 5678999999999999999844444 4679
Q ss_pred CCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchh-ccCCCCcceeecccccccCcc--h-hhhcCCC
Q 035522 224 GNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKE-VGNMKNLKILLLHRNNLTGPI--S-STIGYLN 299 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~L~~n~~~~~~--~-~~~~~~~ 299 (509)
.++++|++|++++|.+++..|..+..+++|++|+++.|.+.. ++.. +..+++|++|++++|.+++.. + .....++
T Consensus 145 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~ 223 (549)
T 2z81_A 145 AGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF-LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223 (549)
T ss_dssp TTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTT-HHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCC
T ss_pred hcccccCeeeccCCcccccChhhhhccccCceEecccCcccc-cchhhHhhcccccEEEccCCccccccccccchhhhhh
Confidence 999999999999999999899999999999999999998864 4443 456899999999999998642 1 1224466
Q ss_pred CCCEEECcCCCCCCCCcc----c------------------------------c--------------------------
Q 035522 300 LLEILDLSHNRLDGPIPS----T------------------------------I-------------------------- 319 (509)
Q Consensus 300 ~L~~L~l~~n~l~~~~~~----~------------------------------~-------------------------- 319 (509)
+|+.|++++|.+++..+. . +
T Consensus 224 ~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~ 303 (549)
T 2z81_A 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLS 303 (549)
T ss_dssp CCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCC
T ss_pred cccceeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccch
Confidence 777777766654321110 0 0
Q ss_pred ---CCCCCcCeeeCccccCCccCcccc-cCCCCCCEEEcCCCcCCCCCcc---ccCCCCCCCEEECcCCcCcccCc--cc
Q 035522 320 ---GNLTNLTSLVLSSNQLSGLLPREV-GNLKYLDSRSLDGNNLIGPIPP---TIGYLTNLTSLNLGYNQLSSSIP--PE 390 (509)
Q Consensus 320 ---~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~L~~n~l~~~~~--~~ 390 (509)
...++|++|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|. .+..+++|++|++++|++++..+ ..
T Consensus 304 ~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 382 (549)
T 2z81_A 304 TVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI 382 (549)
T ss_dssp HHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHH
T ss_pred hhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhh
Confidence 11245666777777665 445444 5688999999999988876543 36778899999999999885432 45
Q ss_pred ccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeEe
Q 035522 391 LMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLI 470 (509)
Q Consensus 391 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ 470 (509)
+..+++|++|++++|+++ .+|..+..+++|++|++++|.+. .+|..+ .++|++|++++|++++.+ ..+.+|++|+
T Consensus 383 ~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~--~~~L~~L~Ls~N~l~~~~-~~l~~L~~L~ 457 (549)
T 2z81_A 383 LLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI--PQTLEVLDVSNNNLDSFS-LFLPRLQELY 457 (549)
T ss_dssp GGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS--CTTCSEEECCSSCCSCCC-CCCTTCCEEE
T ss_pred hhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh--cCCceEEECCCCChhhhc-ccCChhcEEE
Confidence 778889999999999988 67778888899999999999987 444443 258999999999998754 5778899999
Q ss_pred cccCccccCCCCCC-CCCCCCCccCcCCCcCC
Q 035522 471 VSENNLELENSTSS-ENAPPPQAKPFKGNKGK 501 (509)
Q Consensus 471 ls~N~l~~~~~ip~-~~~~~l~~l~l~~N~~l 501 (509)
+++|+++. +|. ..+++++.+++++|..-
T Consensus 458 Ls~N~l~~---ip~~~~l~~L~~L~Ls~N~l~ 486 (549)
T 2z81_A 458 ISRNKLKT---LPDASLFPVLLVMKISRNQLK 486 (549)
T ss_dssp CCSSCCSS---CCCGGGCTTCCEEECCSSCCC
T ss_pred CCCCccCc---CCCcccCccCCEEecCCCccC
Confidence 99999987 887 67889999999999643
No 23
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=3.5e-41 Score=343.42 Aligned_cols=368 Identities=21% Similarity=0.234 Sum_probs=283.1
Q ss_pred cEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcC-CccCCCCCCCCEEECc
Q 035522 109 ITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSI-PLEIGNLKDLDYLMLQ 187 (509)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~L~ 187 (509)
+.++.+++. + ..+|. + .++|++|++++|.+.+..|..|+++++|++|++++|.+.+.+ +..|.++++|++|+++
T Consensus 13 ~~~~c~~~~-l-~~lp~-l--~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls 87 (455)
T 3v47_A 13 YNAICINRG-L-HQVPE-L--PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD 87 (455)
T ss_dssp TEEECCSSC-C-SSCCC-C--CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred cccCcCCCC-c-ccCCC-C--CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence 456666665 3 24555 3 268999999999999888999999999999999999987555 5678999999999999
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCcccCCcc--cCCCCCCcEEECcCCCCCCCCchh-hhCCCCcceeecccCcCC
Q 035522 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPRE--VGNLKILELLYLDSNNLTGPIPST-LYHLNPLIEWYLAYNNLV 264 (509)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~--l~~l~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~ 264 (509)
+|.+++..|..+.++++|++|++++|.+++..+.. +..+++|++|++++|.+++..|.. +..+++|++|++++|.+.
T Consensus 88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~ 167 (455)
T 3v47_A 88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK 167 (455)
T ss_dssp TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence 99999888999999999999999999998755444 889999999999999999877766 789999999999999999
Q ss_pred CCCchhccCC--CCcceeecccccccCcchhh--------hcCCCCCCEEECcCCCCCCCCccccCC---CCCcCeeeCc
Q 035522 265 GPLPKEVGNM--KNLKILLLHRNNLTGPISST--------IGYLNLLEILDLSHNRLDGPIPSTIGN---LTNLTSLVLS 331 (509)
Q Consensus 265 ~~~~~~l~~~--~~L~~L~L~~n~~~~~~~~~--------~~~~~~L~~L~l~~n~l~~~~~~~~~~---l~~L~~L~ls 331 (509)
+..+..+..+ .+|+.+++++|.+.+..+.. +..+++|++|++++|.+++..|..+.. .++|+.|+++
T Consensus 168 ~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~ 247 (455)
T 3v47_A 168 SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILS 247 (455)
T ss_dssp CCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECT
T ss_pred ccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeec
Confidence 8888777665 68999999999887644332 235678999999999888766665543 3788899998
Q ss_pred cccCCccC----------ccccc--CCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCce
Q 035522 332 SNQLSGLL----------PREVG--NLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQN 399 (509)
Q Consensus 332 ~n~l~~~~----------~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~ 399 (509)
+|...+.. +..+. ..++|+.|++++|.+.+..|..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~ 327 (455)
T 3v47_A 248 NSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLK 327 (455)
T ss_dssp TCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCE
T ss_pred cccccccccchhhhccCcccccccccccCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCE
Confidence 88654321 11111 2256777777777777766777777777777777777777666667777777777
Q ss_pred eeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcc---ccCCCeEecccCcc
Q 035522 400 LVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPAS---VRRIPKLIVSENNL 476 (509)
Q Consensus 400 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~---~~~l~~L~ls~N~l 476 (509)
|++++|.+.+..|..+..+++|++|++++|++.+..|..+..+++|++|++++|++++..+.. +.+|++|++++|++
T Consensus 328 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 407 (455)
T 3v47_A 328 LNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407 (455)
T ss_dssp EECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCc
Confidence 777777777666677777777777777777777666777777777777777777777655433 34555777777777
Q ss_pred ccCCCCC
Q 035522 477 ELENSTS 483 (509)
Q Consensus 477 ~~~~~ip 483 (509)
++ ..|
T Consensus 408 ~~--~~~ 412 (455)
T 3v47_A 408 DC--SCP 412 (455)
T ss_dssp CC--CTT
T ss_pred cc--CCC
Confidence 77 565
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=6e-42 Score=355.03 Aligned_cols=383 Identities=21% Similarity=0.229 Sum_probs=306.4
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..++++|+++++.+.+.. +..|.++++|++|++++|. +++..|..|.++++|++|++++|.++ .+|.. .+++
T Consensus 20 ~~~L~~L~Ls~n~i~~~~----~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~ 91 (520)
T 2z7x_B 20 SQKTTILNISQNYISELW----TSDILSLSKLRILIISHNR-IQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVN 91 (520)
T ss_dssp CTTCSEEECCSSCCCCCC----HHHHTTCTTCCEEECCSSC-CCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCC
T ss_pred cccccEEECCCCcccccC----hhhccccccccEEecCCCc-cCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCC
Confidence 378999999999998755 5689999999999999999 88888999999999999999999998 56665 8999
Q ss_pred CcEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC--CEEeccCCcC--cccCCcccCC------
Q 035522 157 LFQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL--TGLNLSLNKL--SGRLPREVGN------ 225 (509)
Q Consensus 157 L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l~~------ 225 (509)
|++|++++|.+++ .+|..|+++++|++|++++|.+++ ..+..+++| ++|++++|.+ .+..|..+..
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l 168 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESL 168 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccccccccccccccceE
Confidence 9999999999987 478899999999999999999886 356777788 9999999988 5555655544
Q ss_pred --------------------CCCCcEEECcCCC-------CCCCCchhhhCCC---------------------------
Q 035522 226 --------------------LKILELLYLDSNN-------LTGPIPSTLYHLN--------------------------- 251 (509)
Q Consensus 226 --------------------l~~L~~L~l~~n~-------l~~~~~~~l~~~~--------------------------- 251 (509)
+++|+.+++++|. +.+.++ .+..++
T Consensus 169 ~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~ 247 (520)
T 2z7x_B 169 HIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHT 247 (520)
T ss_dssp EEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTS
T ss_pred EEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccccCHHHHHHHHHHhhhC
Confidence 5566666666664 222222 333333
Q ss_pred CcceeecccCcCCCCCchhc-----cCCCCcceeecccccccCcch-hhhcCC---CCCCEEECcCCCCCCCCccccCCC
Q 035522 252 PLIEWYLAYNNLVGPLPKEV-----GNMKNLKILLLHRNNLTGPIS-STIGYL---NLLEILDLSHNRLDGPIPSTIGNL 322 (509)
Q Consensus 252 ~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~L~~n~~~~~~~-~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l 322 (509)
+|++|++++|.+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+
T Consensus 248 ~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l 323 (520)
T 2z7x_B 248 TVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKI 323 (520)
T ss_dssp SCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSC
T ss_pred cccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhC
Confidence 56666666666666666665 6666677777766666 233 233222 56788888887765432 12678
Q ss_pred CCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCC--CCccccCCCCCCCEEECcCCcCcccCcc-cccCCccCce
Q 035522 323 TNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIG--PIPPTIGYLTNLTSLNLGYNQLSSSIPP-ELMNCSQLQN 399 (509)
Q Consensus 323 ~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~~~~L~~ 399 (509)
++|++|++++|.+++..|..+..+++|++|++++|++.+ .+|..+..+++|++|++++|.+++.+|. .+..+++|++
T Consensus 324 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~ 403 (520)
T 2z7x_B 324 SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLS 403 (520)
T ss_dssp CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCE
T ss_pred CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCE
Confidence 999999999999998889999999999999999999986 5567789999999999999999975554 4788899999
Q ss_pred eeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc---cccCCCeEecccCcc
Q 035522 400 LVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA---SVRRIPKLIVSENNL 476 (509)
Q Consensus 400 L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~ls~N~l 476 (509)
|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+. .+.++++|++++|++
T Consensus 404 L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~ 480 (520)
T 2z7x_B 404 LNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480 (520)
T ss_dssp EECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCB
T ss_pred EECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCC
Confidence 99999999887776654 79999999999999 8888888999999999999999954333 245677999999999
Q ss_pred cc
Q 035522 477 EL 478 (509)
Q Consensus 477 ~~ 478 (509)
++
T Consensus 481 ~c 482 (520)
T 2z7x_B 481 DC 482 (520)
T ss_dssp CC
T ss_pred cc
Confidence 88
No 25
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=8.9e-42 Score=329.49 Aligned_cols=292 Identities=30% Similarity=0.485 Sum_probs=217.5
Q ss_pred cCchhHHHHHHHHHHhccCCCCCCCCCCCCCCCCCCCC--CCceecCCC---CCEEEEEcCCCCCcc--cccccCCCccC
Q 035522 31 LTASDASSAIQLEREALLNSGWWNSSWATANYTSDHCK--WMGITCNSA---GSIVEISSYEMDNNG--NAAELSQFNFT 103 (509)
Q Consensus 31 ~~~~~~~~~l~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~~~~l~ 103 (509)
.|.++|++||+++|+++.++. .+.+|.. +.+||. |.||.|+.. ++|++|+++++.+.+ .+ +..+.
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~----~~~l~ 73 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPI----PSSLA 73 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEEC----CGGGG
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCccc----ChhHh
Confidence 588999999999999997765 6889975 678998 999999754 789999999998887 66 77888
Q ss_pred CCCCCcEEecCC-CCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 104 CFPNLITFKISG-TGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 104 ~l~~L~~L~l~~-~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
.+++|++|++++ |. +.+.+|..++++++|++|++++|.+.+.+|..|.++++|++|++++|.+.+.+|..+.++++|+
T Consensus 74 ~l~~L~~L~L~~~n~-l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 152 (313)
T 1ogq_A 74 NLPYLNFLYIGGINN-LVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152 (313)
T ss_dssp GCTTCSEEEEEEETT-EESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCC
T ss_pred CCCCCCeeeCCCCCc-ccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCC
Confidence 888888888884 76 7778888888888888888888888888888888888888888888888877888888888888
Q ss_pred EEECcCCCCCCCCcccccCCC-CCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccC
Q 035522 183 YLMLQGNKLDGLIPSSIGNLT-KLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
+|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |++|++++|.+++..|..+..+++|++|++++|
T Consensus 153 ~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N 231 (313)
T 1ogq_A 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231 (313)
T ss_dssp EEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSS
T ss_pred eEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCC
Confidence 888888888777777777776 788888888877777777777665 777777777776666666666666666666666
Q ss_pred cCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCcccc
Q 035522 262 NLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQ 334 (509)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 334 (509)
.+++..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|.+++.+|.. ..+++|+.+++++|.
T Consensus 232 ~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 232 SLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp EECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred ceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66544443 455555556666555555555555555555555555555555555543 445555555555554
No 26
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=7e-38 Score=319.57 Aligned_cols=345 Identities=28% Similarity=0.405 Sum_probs=291.2
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..+++.|++.++.+.. .+.+..+++|++|++++|. +.+. +. +.++++|++|++++|.+.+..+ ++++++
T Consensus 45 l~~l~~L~l~~~~i~~------l~~~~~l~~L~~L~Ls~n~-l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~ 113 (466)
T 1o6v_A 45 LDQVTTLQADRLGIKS------IDGVEYLNNLTQINFSNNQ-LTDI-TP-LKNLTKLVDILMNNNQIADITP--LANLTN 113 (466)
T ss_dssp HHTCCEEECCSSCCCC------CTTGGGCTTCCEEECCSSC-CCCC-GG-GTTCTTCCEEECCSSCCCCCGG--GTTCTT
T ss_pred hccccEEecCCCCCcc------CcchhhhcCCCEEECCCCc-cCCc-hh-hhccccCCEEECCCCccccChh--hcCCCC
Confidence 3578899999888765 2357889999999999998 6654 43 8999999999999999986544 899999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
|++|++++|.+.+. +. +.++++|++|++++|.+.+. ..+.++++|++|+++ +.+.+. + .+.++++|++|++++
T Consensus 114 L~~L~L~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~-~-~~~~l~~L~~L~l~~ 186 (466)
T 1o6v_A 114 LTGLTLFNNQITDI-DP-LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDL-K-PLANLTTLERLDISS 186 (466)
T ss_dssp CCEEECCSSCCCCC-GG-GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCC-G-GGTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCCC-hH-HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCc-h-hhccCCCCCEEECcC
Confidence 99999999999854 33 88999999999999998864 358999999999997 444433 2 388999999999999
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCc
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIP 316 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 316 (509)
|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 187 n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~ 260 (466)
T 1o6v_A 187 NKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP 260 (466)
T ss_dssp SCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG
T ss_pred CcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh
Confidence 998753 458889999999999999987655 67789999999999998854 367889999999999999986544
Q ss_pred cccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCcc
Q 035522 317 STIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 396 (509)
Q Consensus 317 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 396 (509)
+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++
T Consensus 261 --~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~ 332 (466)
T 1o6v_A 261 --LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTK 332 (466)
T ss_dssp --GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTT
T ss_pred --hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCcc
Confidence 7889999999999999986544 7889999999999999986543 7789999999999999997655 678899
Q ss_pred CceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcc
Q 035522 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
|++|++++|.+.+. ..+..+++|++|++++|++.+..| +..+++|+.|++++|++++
T Consensus 333 L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 333 LQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp CCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 99999999999865 468899999999999999997776 8899999999999999887
No 27
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=2.2e-38 Score=331.12 Aligned_cols=395 Identities=18% Similarity=0.202 Sum_probs=305.8
Q ss_pred CCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCC
Q 035522 69 WMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIP 148 (509)
Q Consensus 69 w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~ 148 (509)
+.++..+...++++|+++++.+.+.. +..|.++++|++|++++|. +++..|..|..+++|++|++++|.++ .+|
T Consensus 43 L~~ip~~~~~~L~~L~Ls~N~i~~~~----~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp 116 (562)
T 3a79_B 43 LTHVPKDLPPRTKALSLSQNSISELR----MPDISFLSELRVLRLSHNR-IRSLDFHVFLFNQDLEYLDVSHNRLQ-NIS 116 (562)
T ss_dssp CCSCCTTSCTTCCEEECCSSCCCCCC----GGGTTTCTTCCEEECCSCC-CCEECTTTTTTCTTCCEEECTTSCCC-EEC
T ss_pred CccCCCCCCCCcCEEECCCCCccccC----hhhhccCCCccEEECCCCC-CCcCCHHHhCCCCCCCEEECCCCcCC-ccC
Confidence 33344333478999999999998765 6789999999999999999 88888999999999999999999998 667
Q ss_pred ccccCCCCCcEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC--CEEeccCCcC--cccCCccc
Q 035522 149 SEIGSSRNLFQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL--TGLNLSLNKL--SGRLPREV 223 (509)
Q Consensus 149 ~~l~~l~~L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L--~~L~l~~n~l--~~~~~~~l 223 (509)
.. .+++|++|++++|.+.+ ..|..|+++++|++|++++|.+++. .+..+++| ++|++++|.+ ++..|..+
T Consensus 117 ~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l 191 (562)
T 3a79_B 117 CC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGGETESL 191 (562)
T ss_dssp SC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSSSCCEE
T ss_pred cc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeecccccccccCcccc
Confidence 66 89999999999999986 3568899999999999999999864 34555555 9999999988 66666555
Q ss_pred CC--------------------------CCCCcEEECcCCCC----------------------------CCC----Cch
Q 035522 224 GN--------------------------LKILELLYLDSNNL----------------------------TGP----IPS 245 (509)
Q Consensus 224 ~~--------------------------l~~L~~L~l~~n~l----------------------------~~~----~~~ 245 (509)
.. +++|+.+++++|.. .+. ++.
T Consensus 192 ~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~ 271 (562)
T 3a79_B 192 QIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQ 271 (562)
T ss_dssp EECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHH
T ss_pred cccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHH
Confidence 44 34566666665531 000 001
Q ss_pred hhhCCCCcceeecccCcCCCCCchhc-----cCCCCcceeecccccccCcch-hhhc---CCCCCCEEECcCCCCCCCCc
Q 035522 246 TLYHLNPLIEWYLAYNNLVGPLPKEV-----GNMKNLKILLLHRNNLTGPIS-STIG---YLNLLEILDLSHNRLDGPIP 316 (509)
Q Consensus 246 ~l~~~~~L~~L~l~~n~~~~~~~~~l-----~~~~~L~~L~L~~n~~~~~~~-~~~~---~~~~L~~L~l~~n~l~~~~~ 316 (509)
....++|++|++++|.+++.+|..+ ..++.|+.+++..+.+ .+| ..+. ...+|++|++++|.+....
T Consensus 272 -~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~- 347 (562)
T 3a79_B 272 -FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV- 347 (562)
T ss_dssp -HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC-
T ss_pred -hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc-
Confidence 1122478999999999998888776 5666666666666665 223 2222 2367999999999876432
Q ss_pred cccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCC--CccccCCCCCCCEEECcCCcCcccCcc-cccC
Q 035522 317 STIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGP--IPPTIGYLTNLTSLNLGYNQLSSSIPP-ELMN 393 (509)
Q Consensus 317 ~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~ 393 (509)
....+++|++|++++|.+++..|..+..+++|++|++++|++++. +|..+..+++|++|++++|.+++.+|. .+..
T Consensus 348 -~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~ 426 (562)
T 3a79_B 348 -CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAW 426 (562)
T ss_dssp -CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCC
T ss_pred -CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcC
Confidence 125788999999999999988888889999999999999998863 346688899999999999999874554 4778
Q ss_pred CccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc---cccCCCeEe
Q 035522 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA---SVRRIPKLI 470 (509)
Q Consensus 394 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~ 470 (509)
+++|++|++++|.+++..|..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+. .+.++++|+
T Consensus 427 l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~ 503 (562)
T 3a79_B 427 AESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIW 503 (562)
T ss_dssp CTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEE
T ss_pred cccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEE
Confidence 89999999999999877665543 78999999999998 7887777999999999999999854333 245666999
Q ss_pred cccCccccCCCCCC
Q 035522 471 VSENNLELENSTSS 484 (509)
Q Consensus 471 ls~N~l~~~~~ip~ 484 (509)
+++|++.+ ..|.
T Consensus 504 l~~N~~~c--~c~~ 515 (562)
T 3a79_B 504 LHDNPWDC--TCPG 515 (562)
T ss_dssp CCSCCBCC--CHHH
T ss_pred ecCCCcCC--Ccch
Confidence 99999987 5543
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=4.7e-37 Score=313.50 Aligned_cols=346 Identities=30% Similarity=0.431 Sum_probs=298.2
Q ss_pred CCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
..+++++.|+++++. +. .+| .+..+++|++|++++|.+.+..+ +.++++|++|++++|.+.+..+ +.++++|+
T Consensus 43 ~~l~~l~~L~l~~~~-i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~ 115 (466)
T 1o6v_A 43 TDLDQVTTLQADRLG-IK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLT 115 (466)
T ss_dssp HHHHTCCEEECCSSC-CC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred hHhccccEEecCCCC-Cc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCC
Confidence 346789999999998 54 355 48889999999999999985544 9999999999999999985544 89999999
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCc
Q 035522 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNN 262 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 262 (509)
+|++++|.+++..+ +.++++|++|++++|.+.+ ++ .+..+++|++|+++ +.+.+. ..+..+++|++|++++|.
T Consensus 116 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~L~~L~l~~n~ 188 (466)
T 1o6v_A 116 GLTLFNNQITDIDP--LKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLSFG-NQVTDL--KPLANLTTLERLDISSNK 188 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEEEE-ESCCCC--GGGTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCChH--HcCCCCCCEEECCCCccCC-Ch-hhccCCcccEeecC-CcccCc--hhhccCCCCCEEECcCCc
Confidence 99999999987633 8999999999999999885 33 48999999999997 455433 348899999999999999
Q ss_pred CCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCccc
Q 035522 263 LVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPRE 342 (509)
Q Consensus 263 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 342 (509)
+.+. ..+..+++|++|++++|.+++..+ ++.+++|++|++++|.+++. ..+..+++|++|++++|.+++..+
T Consensus 189 l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 260 (466)
T 1o6v_A 189 VSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260 (466)
T ss_dssp CCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--
T ss_pred CCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--
Confidence 8864 358889999999999999987655 77899999999999999853 367889999999999999987654
Q ss_pred ccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCC
Q 035522 343 VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLR 422 (509)
Q Consensus 343 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 422 (509)
+..+++|+.|++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..| +..+++|+
T Consensus 261 ~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~ 334 (466)
T 1o6v_A 261 LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQ 334 (466)
T ss_dssp GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCC
T ss_pred hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCC
Confidence 8899999999999999986543 7889999999999999996544 7889999999999999997655 78899999
Q ss_pred eEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCC-ccccCCCeEecccCcccc
Q 035522 423 QLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP-ASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 423 ~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~ls~N~l~~ 478 (509)
+|++++|.+.+. ..+..+++|++|++++|++++..| ..+.++++|++++|++++
T Consensus 335 ~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 335 RLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp EEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGGGTTCTTCCEEECCCEEEEC
T ss_pred EeECCCCccCCc--hhhccCCCCCEEeCCCCccCccchhhcCCCCCEEeccCCcccC
Confidence 999999999865 478899999999999999998877 345677799999999998
No 29
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-37 Score=319.11 Aligned_cols=323 Identities=23% Similarity=0.200 Sum_probs=284.2
Q ss_pred CCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccC
Q 035522 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSL 212 (509)
Q Consensus 133 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 212 (509)
-+.++.+++.++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus 13 ~~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 13 DRAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TTEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 467888888887 677665 36899999999999987788999999999999999999988889999999999999999
Q ss_pred CcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcch
Q 035522 213 NKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPIS 292 (509)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 292 (509)
|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99987666778999999999999999998888889999999999999999988878889999999999999999988777
Q ss_pred hhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCC
Q 035522 293 STIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTN 372 (509)
Q Consensus 293 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 372 (509)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|+.|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 78899999999999999998777778889999999999998877777766666678999999999988655567888999
Q ss_pred CCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcC
Q 035522 373 LTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSK 452 (509)
Q Consensus 373 L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~ 452 (509)
|++|++++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999999987777888899999999999999988888899999999999999999877777888899999999999
Q ss_pred CcCccc
Q 035522 453 NNLSGV 458 (509)
Q Consensus 453 N~l~~~ 458 (509)
|++...
T Consensus 330 N~l~c~ 335 (477)
T 2id5_A 330 NPLACD 335 (477)
T ss_dssp SCEECS
T ss_pred CCccCc
Confidence 988754
No 30
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=2.1e-37 Score=313.53 Aligned_cols=354 Identities=24% Similarity=0.265 Sum_probs=218.7
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCC-------------CEEEccCCcC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKL-------------QVLNLSQNHL 143 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L-------------~~L~L~~~~l 143 (509)
..++++++++++.+ +.+ +..+.++++|++|++++|. +.|.+|..++++.+| ++|++++|.+
T Consensus 10 ~~~L~~L~l~~n~l-~~i----P~~i~~L~~L~~L~l~~n~-~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l 83 (454)
T 1jl5_A 10 NTFLQEPLRHSSNL-TEM----PVEAENVKSKTEYYNAWSE-WERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGL 83 (454)
T ss_dssp -----------------------------CCHHHHHHHHHH-HHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCC
T ss_pred cccchhhhcccCch-hhC----ChhHhcccchhhhhccCCc-ccccCCcccccchhcchhhhhhhhccCCCEEEecCCcc
Confidence 35788899999988 677 7889999999999999998 888999988888764 8999999988
Q ss_pred CccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccc
Q 035522 144 TGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREV 223 (509)
Q Consensus 144 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 223 (509)
++ +|.. .++|++|++++|.+++ +|.. +++|++|++++|.+++. +.. .++|++|++++|.+++ +| .+
T Consensus 84 ~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~~-lp-~~ 149 (454)
T 1jl5_A 84 SS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLEK-LP-EL 149 (454)
T ss_dssp SC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCSS-CC-CC
T ss_pred cc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCCC-Cc-cc
Confidence 84 4442 3688899999888885 6643 36788888888887753 221 2678888888888875 56 48
Q ss_pred CCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCE
Q 035522 224 GNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEI 303 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 303 (509)
+++++|++|++++|.+++ +|..+ .+|++|++++|.+++ +| .+..+++|+.|++++|.+++ +|.. .++|++
T Consensus 150 ~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~ 219 (454)
T 1jl5_A 150 QNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLES 219 (454)
T ss_dssp TTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCE
T ss_pred CCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccE
Confidence 888888888888888774 45432 478888888888876 45 47778888888888888775 3322 357888
Q ss_pred EECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcC
Q 035522 304 LDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQL 383 (509)
Q Consensus 304 L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 383 (509)
|++++|.++ .+|. +..+++|++|++++|++++ +|. ..++|+.|++++|.+.+ +|.. +++|++|++++|.+
T Consensus 220 L~l~~n~l~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l 289 (454)
T 1jl5_A 220 IVAGNNILE-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIF 289 (454)
T ss_dssp EECCSSCCS-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCC
T ss_pred EECcCCcCC-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCcc
Confidence 888888877 5563 7778888888888887774 333 23677888888877764 4432 36677777777777
Q ss_pred cccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccc
Q 035522 384 SSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463 (509)
Q Consensus 384 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 463 (509)
++. +. + .++|+.|++++|.+.+. +. ..++|++|++++|++.+ +|.. +++|++|++++|++++ +|..+
T Consensus 290 ~~l-~~-~--~~~L~~L~l~~N~l~~i-~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~~l 356 (454)
T 1jl5_A 290 SGL-SE-L--PPNLYYLNASSNEIRSL-CD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPELP 356 (454)
T ss_dssp SEE-SC-C--CTTCCEEECCSSCCSEE-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCCCC
T ss_pred Ccc-cC-c--CCcCCEEECcCCcCCcc-cC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccchh
Confidence 652 11 0 13455555555555431 11 11355555555555553 3322 3455555555555553 33344
Q ss_pred cCCCeEecccCccccCCCCC
Q 035522 464 RRIPKLIVSENNLELENSTS 483 (509)
Q Consensus 464 ~~l~~L~ls~N~l~~~~~ip 483 (509)
.++++|++++|++++++.+|
T Consensus 357 ~~L~~L~L~~N~l~~l~~ip 376 (454)
T 1jl5_A 357 QNLKQLHVEYNPLREFPDIP 376 (454)
T ss_dssp TTCCEEECCSSCCSSCCCCC
T ss_pred hhccEEECCCCCCCcCCCCh
Confidence 45555555555555533333
No 31
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=3.5e-37 Score=312.18 Aligned_cols=345 Identities=20% Similarity=0.212 Sum_probs=224.3
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
.++++|+++++.+.+. +.+..+++|++|++++|. +++. | ++.+++|++|++++|.+++. + ++++++|
T Consensus 42 ~~L~~L~Ls~n~l~~~------~~l~~l~~L~~L~Ls~n~-l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L 108 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM------TGIEKLTGLTKLICTSNN-ITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL 108 (457)
T ss_dssp TTCCEEECCSSCCCCC------TTGGGCTTCSEEECCSSC-CSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred CCCCEEEccCCCcccC------hhhcccCCCCEEEccCCc-CCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence 5677777777777652 256777777777777777 5542 3 67777777777777777753 3 6677777
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
++|++++|.+++ +| ++++++|++|++++|.+++. .+.++++|++|++++|...+.+ .+..+++|++|++++|
T Consensus 109 ~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n 180 (457)
T 3bz5_A 109 TYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFN 180 (457)
T ss_dssp CEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCC
Confidence 777777777774 33 66777777777777777764 2667777777777777544344 3666777777777777
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCcc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPS 317 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 317 (509)
.+++ +| +..+++|++|++++|.+++. .+..+++|+.|++++|.+++ +| +..+++|++|++++|.+++..+
T Consensus 181 ~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~- 250 (457)
T 3bz5_A 181 KITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV- 250 (457)
T ss_dssp CCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC-
T ss_pred ccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH-
Confidence 7775 33 66677777777777777654 26667777777777777775 34 6667777777777777765432
Q ss_pred ccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcc--------
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPP-------- 389 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 389 (509)
..+++|+.|++++| +|+.+++++|.+.+.+| +..+++|+.|++++|...+.+|.
T Consensus 251 --~~l~~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L 312 (457)
T 3bz5_A 251 --STLSKLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITEL 312 (457)
T ss_dssp --TTCTTCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCC
T ss_pred --HHCCCCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEe
Confidence 23444444443332 22333444444433333 23445555555555544333221
Q ss_pred cccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeE
Q 035522 390 ELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKL 469 (509)
Q Consensus 390 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L 469 (509)
.+..+++|++|++++|++++. .+..+++|+.|++++|++++ ++.|..|++++|.++|. ..+..++.+
T Consensus 313 ~l~~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~--~~~~~l~~l 379 (457)
T 3bz5_A 313 DLSQNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE--GQTITMPKE 379 (457)
T ss_dssp CCTTCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE--EEEEECCCB
T ss_pred chhhcccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec--ceeeecCcc
Confidence 133446778888888888763 27778888888888888874 24566667777877776 345667788
Q ss_pred ecccCccccCCCCCCCC
Q 035522 470 IVSENNLELENSTSSEN 486 (509)
Q Consensus 470 ~ls~N~l~~~~~ip~~~ 486 (509)
++++|+++| .||...
T Consensus 380 ~l~~N~l~g--~ip~~~ 394 (457)
T 3bz5_A 380 TLTNNSLTI--AVSPDL 394 (457)
T ss_dssp CCBTTBEEE--ECCTTC
T ss_pred ccccCcEEE--EcChhH
Confidence 999999999 888743
No 32
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=5.9e-37 Score=313.99 Aligned_cols=350 Identities=22% Similarity=0.201 Sum_probs=303.7
Q ss_pred cEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcC
Q 035522 109 ITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188 (509)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 188 (509)
+.++.+++. ++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..|..|.++++|++|++++
T Consensus 14 ~~v~c~~~~-l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~ 89 (477)
T 2id5_A 14 RAVLCHRKR-FV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS 89 (477)
T ss_dssp TEEECCSCC-CS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCC-cC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence 567777776 43 4666553 5899999999999988889999999999999999999988899999999999999999
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCc
Q 035522 189 NKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLP 268 (509)
Q Consensus 189 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~ 268 (509)
|.++...+..|.++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+
T Consensus 90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 169 (477)
T 2id5_A 90 NRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPT 169 (477)
T ss_dssp SCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCH
T ss_pred CcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccCh
Confidence 99998777778999999999999999998888899999999999999999998888889999999999999999998777
Q ss_pred hhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCC
Q 035522 269 KEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKY 348 (509)
Q Consensus 269 ~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~ 348 (509)
..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.++.......+|++|++++|.+++..+..+..+++
T Consensus 170 ~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 249 (477)
T 2id5_A 170 EALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVY 249 (477)
T ss_dssp HHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred hHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccc
Confidence 78999999999999999999887788999999999999999887777776666779999999999999766577899999
Q ss_pred CCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEeccc
Q 035522 349 LDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSH 428 (509)
Q Consensus 349 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 428 (509)
|+.|++++|.+.+..+..+..+++|++|++++|++++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++
T Consensus 250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 329 (477)
T 2id5_A 250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS 329 (477)
T ss_dssp CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence 99999999999988788899999999999999999998899999999999999999999987778889999999999999
Q ss_pred CcCCcCCh-hhccCCCCCCEEeCcCCcCcccCCcccc
Q 035522 429 NFINGTIP-SQLGNIPNISAVDLSKNNLSGVVPASVR 464 (509)
Q Consensus 429 n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~~~~ 464 (509)
|.+...-+ .++.. ....+++.++...-..|..+.
T Consensus 330 N~l~c~c~~~~~~~--~~~~~~~~~~~~~C~~p~~~~ 364 (477)
T 2id5_A 330 NPLACDCRLLWVFR--RRWRLNFNRQQPTCATPEFVQ 364 (477)
T ss_dssp SCEECSGGGHHHHT--TTTSSCCTTCCCBEEESGGGT
T ss_pred CCccCccchHhHHh--hhhccccCccCceeCCchHHc
Confidence 99874322 12221 223344455554444444443
No 33
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=8.9e-37 Score=320.75 Aligned_cols=336 Identities=19% Similarity=0.201 Sum_probs=215.3
Q ss_pred CCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCE
Q 035522 104 CFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDY 183 (509)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 183 (509)
.+.+++.++++++. +....+..+..+++|++|++++|.+.+..|..|+.+++|++|+|++|.+++..|..|+++++|++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 127 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTV 127 (597)
T ss_dssp GGCCCSEEEESSCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred cCCCceEEEeeCCC-CCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCE
Confidence 35667777777776 54444444666777777777777777666667777777777777777777666666667777777
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcC
Q 035522 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNL 263 (509)
Q Consensus 184 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~ 263 (509)
|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|++++|.+++.
T Consensus 128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~--------------------- 186 (597)
T 3oja_B 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV--------------------- 186 (597)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---------------------
T ss_pred EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---------------------
Confidence 77777766655444456666666666666666665555666666666666666655421
Q ss_pred CCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccc
Q 035522 264 VGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREV 343 (509)
Q Consensus 264 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 343 (509)
.+..+++|+.|++++|.+++ +...+.|+.|++++|.++.. +..+ .
T Consensus 187 ------~~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~~--~--------------------- 231 (597)
T 3oja_B 187 ------DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--N--------------------- 231 (597)
T ss_dssp ------CGGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECSC--C---------------------
T ss_pred ------ChhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-cccc--C---------------------
Confidence 02223455555555554442 22334555556555555421 1111 1
Q ss_pred cCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCe
Q 035522 344 GNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQ 423 (509)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 423 (509)
++|+.|++++|.+++ +..+..+++|+.|++++|.+++..|..+..+++|+.|++++|.+.+ +|..+..+++|+.
T Consensus 232 ---~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~ 305 (597)
T 3oja_B 232 ---VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKV 305 (597)
T ss_dssp ---SCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCE
T ss_pred ---CCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcE
Confidence 345555555555543 2445556666666666666666666666667777777777777664 4555666778888
Q ss_pred EecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCC
Q 035522 424 LDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQR 503 (509)
Q Consensus 424 L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~ 503 (509)
|+|++|.+. .+|..+..+++|++|++++|.+++..+..+..|++|++++|++++ ......+..+....+.+++..|+
T Consensus 306 L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~L~~L~l~~N~~~~--~~~~~~~~~~~~~~~~~~~~~C~ 382 (597)
T 3oja_B 306 LDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCK 382 (597)
T ss_dssp EECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCCCCTTCCCSEEECCSSCEEH--HHHHHHTTTCCTTTBCCCCCCCC
T ss_pred EECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcChhhcCCCCEEEeeCCCCCC--hhHHHHHHHHhhhccccccccCC
Confidence 888888877 567777777888888888888877766777788888888888877 33335566667777888888888
Q ss_pred cc
Q 035522 504 KI 505 (509)
Q Consensus 504 ~~ 505 (509)
.+
T Consensus 383 ~~ 384 (597)
T 3oja_B 383 ID 384 (597)
T ss_dssp TT
T ss_pred cc
Confidence 64
No 34
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=8.2e-37 Score=304.59 Aligned_cols=336 Identities=18% Similarity=0.157 Sum_probs=245.3
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 130 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
++++++|+++++.+....+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..+.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 57899999999999855555578899999999999999877777899999999999999999988888889999999999
Q ss_pred ccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccC
Q 035522 210 LSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
+++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.++++
T Consensus 124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~------ 194 (390)
T 3o6n_A 124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVS------ 194 (390)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECC------
T ss_pred CCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecc------
Confidence 999998855555568888999999988888766565666666666666666665543 12334444444444
Q ss_pred cchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCC
Q 035522 290 PISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369 (509)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 369 (509)
+|.+++ +...++|++|++++|.+... +. ...++|+.|++++|.+++. ..+..
T Consensus 195 ------------------~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~ 246 (390)
T 3o6n_A 195 ------------------YNLLST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLN 246 (390)
T ss_dssp ------------------SSCCSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGG
T ss_pred ------------------cccccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcC
Confidence 444431 12234555555555555432 21 1235666677777666543 45666
Q ss_pred CCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEe
Q 035522 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVD 449 (509)
Q Consensus 370 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ 449 (509)
+++|++|++++|.+++..+..+..+++|++|++++|++.+ +|..+..+++|++|++++|++. .+|..+..+++|++|+
T Consensus 247 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~ 324 (390)
T 3o6n_A 247 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLY 324 (390)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEE
T ss_pred CCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEE
Confidence 7777777777777776667777777788888888887764 4555667788888888888887 5666677788888888
Q ss_pred CcCCcCcccCCccccCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCCccc
Q 035522 450 LSKNNLSGVVPASVRRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQRKIV 506 (509)
Q Consensus 450 ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~~~~ 506 (509)
+++|++++.....+.++++|++++|++.+ .-....+..+....+.+++..|+++.
T Consensus 325 L~~N~i~~~~~~~~~~L~~L~l~~N~~~~--~~~~~~~~~~~~~~~~~~~~~c~~~~ 379 (390)
T 3o6n_A 325 LDHNSIVTLKLSTHHTLKNLTLSHNDWDC--NSLRALFRNVARPAVDDADQHCKIDY 379 (390)
T ss_dssp CCSSCCCCCCCCTTCCCSEEECCSSCEEH--HHHHHHTTTCCTTTBCCCCSCCCTTC
T ss_pred CCCCccceeCchhhccCCEEEcCCCCccc--hhHHHHHHHHHhhcccccCceecccc
Confidence 88888887766777888888888888877 32225566677777888888888754
No 35
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=5.4e-36 Score=303.23 Aligned_cols=349 Identities=25% Similarity=0.290 Sum_probs=273.1
Q ss_pred CCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC-------------cEEeccCCcCCCc
Q 035522 104 CFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL-------------FQLDLSINILNGS 170 (509)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L-------------~~L~L~~n~~~~~ 170 (509)
..++|++|++++|. + +.+|.+++++++|++|++++|.+.+.+|..++++++| ++|++++|.+++
T Consensus 9 ~~~~L~~L~l~~n~-l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~- 85 (454)
T 1jl5_A 9 SNTFLQEPLRHSSN-L-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS- 85 (454)
T ss_dssp ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred ccccchhhhcccCc-h-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence 46899999999999 6 8999999999999999999999999999999998865 999999999984
Q ss_pred CCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCC
Q 035522 171 IPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHL 250 (509)
Q Consensus 171 ~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~ 250 (509)
+|.. .++|++|++++|.+++ +|.. .++|++|++++|.+++ ++.. .++|++|++++|.+++ +| .+..+
T Consensus 86 lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l 152 (454)
T 1jl5_A 86 LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNS 152 (454)
T ss_dssp CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTC
T ss_pred CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCC
Confidence 4542 3789999999999997 5543 4899999999999884 3322 2689999999999996 77 59999
Q ss_pred CCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeC
Q 035522 251 NPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVL 330 (509)
Q Consensus 251 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 330 (509)
++|++|++++|.+++ +|.. ..+|++|++++|.+++ +| .++.+++|++|++++|.+++ +|.. .++|++|++
T Consensus 153 ~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l 222 (454)
T 1jl5_A 153 SFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---PLSLESIVA 222 (454)
T ss_dssp TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---CTTCCEEEC
T ss_pred CCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---cCcccEEEC
Confidence 999999999999986 5543 3599999999999987 55 68999999999999999985 4443 368999999
Q ss_pred ccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCc
Q 035522 331 SSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI 410 (509)
Q Consensus 331 s~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~ 410 (509)
++|.++ .+| .++.+++|++|++++|++.+ +|.. +++|++|++++|.+++ +|.. .++|+.|++++|.+.+.
T Consensus 223 ~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l 292 (454)
T 1jl5_A 223 GNNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL 292 (454)
T ss_dssp CSSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE
T ss_pred cCCcCC-ccc-ccCCCCCCCEEECCCCcCCc-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc
Confidence 999998 566 48899999999999999985 4543 4899999999999995 5543 37899999999999862
Q ss_pred CcccccCCCcCCeEecccCcCCcCChhhccCC-CCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCCCCCCC
Q 035522 411 FPSEIGNLTHLRQLDLSHNFINGTIPSQLGNI-PNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSSENAPP 489 (509)
Q Consensus 411 ~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~~~~~~ 489 (509)
|. ..++|++|++++|.+.+ ++ .+ ++|++|++++|++++ +|..+.++++|++++|++++ +|. .+++
T Consensus 293 -~~---~~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~~~~L~~L~L~~N~l~~---lp~-~l~~ 358 (454)
T 1jl5_A 293 -SE---LPPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPALPPRLERLIASFNHLAE---VPE-LPQN 358 (454)
T ss_dssp -SC---CCTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSC---CCC-CCTT
T ss_pred -cC---cCCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-ccccCCcCCEEECCCCcccc---ccc-hhhh
Confidence 22 13789999999999985 22 33 589999999999997 77788999999999999997 887 7889
Q ss_pred CCccCcCCCcCCC
Q 035522 490 PQAKPFKGNKGKQ 502 (509)
Q Consensus 490 l~~l~l~~N~~lc 502 (509)
++.+++++|+..+
T Consensus 359 L~~L~L~~N~l~~ 371 (454)
T 1jl5_A 359 LKQLHVEYNPLRE 371 (454)
T ss_dssp CCEEECCSSCCSS
T ss_pred ccEEECCCCCCCc
Confidence 9999999998766
No 36
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.4e-35 Score=300.38 Aligned_cols=322 Identities=20% Similarity=0.182 Sum_probs=243.7
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
..+++.|+++++.+++. .+..+++|++|++++|. +++. + ++++++|++|++++|.+++ ++ ++.+++
T Consensus 63 l~~L~~L~Ls~n~l~~~-------~~~~l~~L~~L~Ls~N~-l~~~-~--~~~l~~L~~L~L~~N~l~~-l~--~~~l~~ 128 (457)
T 3bz5_A 63 LTGLTKLICTSNNITTL-------DLSQNTNLTYLACDSNK-LTNL-D--VTPLTKLTYLNCDTNKLTK-LD--VSQNPL 128 (457)
T ss_dssp CTTCSEEECCSSCCSCC-------CCTTCTTCSEEECCSSC-CSCC-C--CTTCTTCCEEECCSSCCSC-CC--CTTCTT
T ss_pred cCCCCEEEccCCcCCeE-------ccccCCCCCEEECcCCC-Ccee-e--cCCCCcCCEEECCCCcCCe-ec--CCCCCc
Confidence 46899999999998872 28899999999999999 6653 3 8899999999999999996 44 889999
Q ss_pred CcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 157 LFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 157 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
|++|++++|.+++. + ++++++|++|++++|...+.+ .+..+++|++|++++|.+++ +| +..+++|++|++++
T Consensus 129 L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~l~~L~~L~l~~ 200 (457)
T 3bz5_A 129 LTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQNKLLNRLNCDT 200 (457)
T ss_dssp CCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTTCTTCCEEECCS
T ss_pred CCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--cccCCCCCEEECcC
Confidence 99999999999963 3 889999999999999665555 48899999999999999986 44 88999999999999
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCC-------
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN------- 309 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n------- 309 (509)
|.+++. .+..+++|++|++++|++++ +| +..+++|+.|++++|.+++.. ++.+++|+.|++++|
T Consensus 201 N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l 271 (457)
T 3bz5_A 201 NNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDL 271 (457)
T ss_dssp SCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCC
T ss_pred CcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEEC
Confidence 999865 48889999999999999997 55 788999999999999998754 345566666655544
Q ss_pred ---CCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCccc
Q 035522 310 ---RLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSS 386 (509)
Q Consensus 310 ---~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 386 (509)
.+.+.+| +..+++|+.|++++|...+.+|. ..+.|+.|+ +..+++|++|++++|++++.
T Consensus 272 ~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~-------------l~~~~~L~~L~L~~N~l~~l 333 (457)
T 3bz5_A 272 THNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELD-------------LSQNPKLVYLYLNNTELTEL 333 (457)
T ss_dssp TTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCC-------------CTTCTTCCEEECTTCCCSCC
T ss_pred CCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEec-------------hhhcccCCEEECCCCccccc
Confidence 3333333 23455666666666654444432 112222222 23346778888888888763
Q ss_pred CcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccc
Q 035522 387 IPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASV 463 (509)
Q Consensus 387 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 463 (509)
.+..+++|+.|++++|++.+ ++.|..|++++|.+.|. ..+..|+.+++++|+++|.+|..+
T Consensus 334 ---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~ 394 (457)
T 3bz5_A 334 ---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL 394 (457)
T ss_dssp ---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred ---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence 26777788888888887764 24556667777777654 234456667777777777777654
No 37
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=1.6e-35 Score=295.16 Aligned_cols=290 Identities=22% Similarity=0.226 Sum_probs=209.5
Q ss_pred CCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
..+++++.++++++. +...-+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+.+..|..+.++++|+
T Consensus 42 ~~l~~l~~l~l~~~~-l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 120 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-MRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLT 120 (390)
T ss_dssp GGGCCCSEEEEESCE-ESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred cccCCceEEEecCCc-hhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCC
Confidence 456899999999998 6554444578999999999999999988888999999999999999999988888899999999
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCc
Q 035522 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNN 262 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 262 (509)
+|++++|.++...+..+.++++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|.
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~ 197 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 197 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccccc
Confidence 999999999966556679999999999999999988888899999999999999999854 36778899999999998
Q ss_pred CCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCccc
Q 035522 263 LVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPRE 342 (509)
Q Consensus 263 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 342 (509)
+.+ +...++|+.|++++|.+... +. ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+..
T Consensus 198 l~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~ 267 (390)
T 3o6n_A 198 LST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHP 267 (390)
T ss_dssp CSE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGG
T ss_pred ccc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhH
Confidence 763 33456777788877777643 22 2245666666666666542 34555566666666666655555555
Q ss_pred ccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCC
Q 035522 343 VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 408 (509)
Q Consensus 343 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 408 (509)
+..+++|+.|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+.
T Consensus 268 ~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~ 331 (390)
T 3o6n_A 268 FVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV 331 (390)
T ss_dssp GTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC
T ss_pred ccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc
Confidence 5555555555555555542 2333344444555555554444 23333334444444444444443
No 38
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.5e-35 Score=311.64 Aligned_cols=393 Identities=19% Similarity=0.187 Sum_probs=310.8
Q ss_pred CCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCC
Q 035522 77 AGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRN 156 (509)
Q Consensus 77 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~ 156 (509)
-.+++.|++++|.+++.. +.+|.++++|++|+|++|+ +++..+..|.++++|++|++++|.+++..+..|+++++
T Consensus 75 l~~L~~L~Ls~N~i~~i~----~~~f~~L~~L~~L~Ls~N~-l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~ 149 (635)
T 4g8a_A 75 FPELQVLDLSRCEIQTIE----DGAYQSLSHLSTLILTGNP-IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKT 149 (635)
T ss_dssp CTTCCEEECTTCCCCEEC----TTTTTTCTTCCEEECTTCC-CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTT
T ss_pred CCCCCEEECCCCcCCCcC----hhHhcCCCCCCEEEccCCc-CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcc
Confidence 358999999999998765 7789999999999999999 77766778999999999999999999777778999999
Q ss_pred CcEEeccCCcCCC-cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCC----CEEeccCCcCcccCCcccCCCCCCcE
Q 035522 157 LFQLDLSINILNG-SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKL----TGLNLSLNKLSGRLPREVGNLKILEL 231 (509)
Q Consensus 157 L~~L~L~~n~~~~-~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L----~~L~l~~n~l~~~~~~~l~~l~~L~~ 231 (509)
|++|++++|.+.. ..|..+..+++|++|++++|++++..+..+..+.++ ..++++.|.+....+..+.. ..++.
T Consensus 150 L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~-~~~~~ 228 (635)
T 4g8a_A 150 LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLHK 228 (635)
T ss_dssp CCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTT-CEEEE
T ss_pred cCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccc-hhhhh
Confidence 9999999999975 467888999999999999999998877776655443 35666666665332222211 11122
Q ss_pred EECcCC--------------------------------------------------------------------------
Q 035522 232 LYLDSN-------------------------------------------------------------------------- 237 (509)
Q Consensus 232 L~l~~n-------------------------------------------------------------------------- 237 (509)
+++.+|
T Consensus 229 l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l 308 (635)
T 4g8a_A 229 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNV 308 (635)
T ss_dssp EEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTC
T ss_pred hhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhccc
Confidence 222111
Q ss_pred --------CCCCCCchhhhCCCCcceeecccCcCCCCCc-------------------hhccCCCCcceeecccccccC-
Q 035522 238 --------NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLP-------------------KEVGNMKNLKILLLHRNNLTG- 289 (509)
Q Consensus 238 --------~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-------------------~~l~~~~~L~~L~L~~n~~~~- 289 (509)
.+.. ...+.....++.|++.+|.+.+..+ .....+++|+.+++++|.+..
T Consensus 309 ~~l~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 309 SSFSLVSVTIER--VKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp SEEEEESCEEEE--CGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred cccccccccccc--ccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 1110 1123344556677776665543221 122356889999999988753
Q ss_pred -cchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccC-cccccCCCCCCEEEcCCCcCCCCCcccc
Q 035522 290 -PISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLL-PREVGNLKYLDSRSLDGNNLIGPIPPTI 367 (509)
Q Consensus 290 -~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 367 (509)
..+..+..+.+|+.+++..+.... .+..+..+++|+.++++++...... ...+..+++++.++++.|.+.+..+..+
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~ 465 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF 465 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT
T ss_pred cccccchhhhhhhhhhhcccccccc-ccccccccccccchhhhhcccccccccccccccccccccccccccccccccccc
Confidence 345566778999999999998764 4456778999999999988765543 3457889999999999999998888889
Q ss_pred CCCCCCCEEECcCCcCc-ccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCC
Q 035522 368 GYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNIS 446 (509)
Q Consensus 368 ~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 446 (509)
..+++++.|++++|.+. +..|..+..+++|++|++++|++.+..|..|.++++|++|+|++|++++..|..+..+++|+
T Consensus 466 ~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~ 545 (635)
T 4g8a_A 466 NGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQ 545 (635)
T ss_dssp TTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCC
T ss_pred ccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCC
Confidence 99999999999999854 35677899999999999999999998899999999999999999999988888999999999
Q ss_pred EEeCcCCcCcccCCcccc----CCCeEecccCcccc
Q 035522 447 AVDLSKNNLSGVVPASVR----RIPKLIVSENNLEL 478 (509)
Q Consensus 447 ~L~ls~N~l~~~~~~~~~----~l~~L~ls~N~l~~ 478 (509)
+|++++|++++..|..+. +|++|++++|+++.
T Consensus 546 ~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C 581 (635)
T 4g8a_A 546 VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 581 (635)
T ss_dssp EEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred EEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence 999999999999887764 56699999999976
No 39
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.7e-34 Score=283.16 Aligned_cols=306 Identities=28% Similarity=0.407 Sum_probs=139.1
Q ss_pred CCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
..+++|+.|+++++. +. .++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.++. ++ .+.++++|+
T Consensus 41 ~~l~~L~~L~l~~~~-i~-~~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~ 113 (347)
T 4fmz_A 41 EELESITKLVVAGEK-VA-SIQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLR 113 (347)
T ss_dssp HHHTTCSEEECCSSC-CC-CCT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCS
T ss_pred hhcccccEEEEeCCc-cc-cch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCC
Confidence 344555555555554 22 122 244455555555555555422 22 4455555555555554442 22 344445555
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCc
Q 035522 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNN 262 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~ 262 (509)
+|++++|.+.+..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+.
T Consensus 114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~---------------------- 168 (347)
T 4fmz_A 114 ELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK---------------------- 168 (347)
T ss_dssp EEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCC----------------------
T ss_pred EEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcC----------------------
Confidence 55555544443211 4444444444444443222222 2444444444444444433
Q ss_pred CCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCccc
Q 035522 263 LVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPRE 342 (509)
Q Consensus 263 ~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~ 342 (509)
+..+ +..+++|+.|++++|.+.+..+ +..+++|+.+++++|.+++..+ +..+++|++|++++|.+++..+
T Consensus 169 --~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 169 --DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp --CCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred --Cchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 2111 3334444444444444432211 4444555555555554443222 4444555555555555443222
Q ss_pred ccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCC
Q 035522 343 VGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLR 422 (509)
Q Consensus 343 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 422 (509)
+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 44455555555555544432 2344455555555555555532 2344455555555555555544444555555555
Q ss_pred eEecccCcCCcCChhhccCCCCCCEEeCcCCcCc
Q 035522 423 QLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 423 ~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
+|++++|++++..| +..+++|++|++++|.|+
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 55555555554333 445555555555555543
No 40
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=5.6e-34 Score=279.56 Aligned_cols=303 Identities=27% Similarity=0.429 Sum_probs=216.7
Q ss_pred CCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEE
Q 035522 154 SRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLY 233 (509)
Q Consensus 154 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 233 (509)
+++|++|+++++.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|.++. ++ .+..+++|++|+
T Consensus 43 l~~L~~L~l~~~~i~-~~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~L~ 116 (347)
T 4fmz_A 43 LESITKLVVAGEKVA-SIQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRELY 116 (347)
T ss_dssp HTTCSEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSEEE
T ss_pred cccccEEEEeCCccc-cch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCEEE
Confidence 344444444444433 122 13344444444444444443211 4444445555554444442 12 344555555555
Q ss_pred CcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCC
Q 035522 234 LDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDG 313 (509)
Q Consensus 234 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 313 (509)
+++|.+.+. +. +..+++|++|++++|......+ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+
T Consensus 117 l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 117 LNEDNISDI-SP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp CTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred CcCCcccCc-hh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 555555432 22 4555555555555554443333 37788999999999999886543 7889999999999999985
Q ss_pred CCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccC
Q 035522 314 PIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393 (509)
Q Consensus 314 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 393 (509)
..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+++.. . +..+++|++|++++|.+++. ..+..
T Consensus 192 ~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~--~~~~~ 263 (347)
T 4fmz_A 192 ISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLS-P-LANLSQLTWLEIGTNQISDI--NAVKD 263 (347)
T ss_dssp CGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCC--GGGTT
T ss_pred ccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCc-c-hhcCCCCCEEECCCCccCCC--hhHhc
Confidence 433 7889999999999999986544 788999999999999998543 3 88999999999999999864 46888
Q ss_pred CccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCC-ccccCCCeEecc
Q 035522 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP-ASVRRIPKLIVS 472 (509)
Q Consensus 394 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~-~~~~~l~~L~ls 472 (509)
+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|++|++++|++++..| ..+.++++|+++
T Consensus 264 l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~ 341 (347)
T 4fmz_A 264 LTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSKMDSADFA 341 (347)
T ss_dssp CTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGGGGGCTTCSEESSS
T ss_pred CCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCccccccChhhhhccceeehh
Confidence 99999999999999864 458889999999999999998889999999999999999999998877 567888899999
Q ss_pred cCccc
Q 035522 473 ENNLE 477 (509)
Q Consensus 473 ~N~l~ 477 (509)
+|+++
T Consensus 342 ~N~i~ 346 (347)
T 4fmz_A 342 NQVIK 346 (347)
T ss_dssp CC---
T ss_pred hhccc
Confidence 99886
No 41
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=3.4e-34 Score=301.11 Aligned_cols=312 Identities=19% Similarity=0.187 Sum_probs=236.4
Q ss_pred CCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEE
Q 035522 154 SRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLY 233 (509)
Q Consensus 154 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ 233 (509)
+.+++.+++++|.+....+..+.++++|++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus 50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 129 (597)
T 3oja_B 50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 129 (597)
T ss_dssp GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence 56788999999888755555567788888888888888877777888888888888888888877777778888888888
Q ss_pred CcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCC
Q 035522 234 LDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDG 313 (509)
Q Consensus 234 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~ 313 (509)
+++|.+++..+..|..+++|++|++++|.+++.. |..+..+++|++|++++|.+++
T Consensus 130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~~~~~~l~~L~~L~L~~N~l~~ 185 (597)
T 3oja_B 130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIE------------------------DDTFQATTSLQNLQLSSNRLTH 185 (597)
T ss_dssp CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC------------------------TTTTTTCTTCCEEECTTSCCSB
T ss_pred eeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCC------------------------hhhhhcCCcCcEEECcCCCCCC
Confidence 8888777443333455555555555555554444 4444455555555555555543
Q ss_pred CCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccC
Q 035522 314 PIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN 393 (509)
Q Consensus 314 ~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 393 (509)
.. +..+++|+.|++++|.+++ +...+.|+.|++++|.+... +.. ..++|+.|++++|.+++. ..+..
T Consensus 186 ~~---~~~l~~L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~--~~~~L~~L~L~~n~l~~~--~~l~~ 252 (597)
T 3oja_B 186 VD---LSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP--VNVELTILKLQHNNLTDT--AWLLN 252 (597)
T ss_dssp CC---GGGCTTCSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECS--CCSCCCEEECCSSCCCCC--GGGGG
T ss_pred cC---hhhhhhhhhhhcccCcccc-----ccCCchhheeeccCCccccc-ccc--cCCCCCEEECCCCCCCCC--hhhcc
Confidence 21 2335566666666665543 23445677788887777633 222 236899999999999963 67889
Q ss_pred CccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc---cccCCCeEe
Q 035522 394 CSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA---SVRRIPKLI 470 (509)
Q Consensus 394 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~---~~~~l~~L~ 470 (509)
+++|+.|++++|.+.+..|..|..+++|++|+|++|.+.+ +|..+..+++|+.|++++|.+++ +|. .+.+|++|+
T Consensus 253 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~-i~~~~~~l~~L~~L~ 330 (597)
T 3oja_B 253 YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH-VERNQPQFDRLENLY 330 (597)
T ss_dssp CTTCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC-CGGGHHHHTTCSEEE
T ss_pred CCCCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc-cCcccccCCCCCEEE
Confidence 9999999999999999889999999999999999999985 67777889999999999999985 444 467888999
Q ss_pred cccCccccCCCCCCCCCCCCCccCcCCCcCCCCcccc
Q 035522 471 VSENNLELENSTSSENAPPPQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 471 ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~~~~~ 507 (509)
+++|++++ +|...++.+..+++.+||+-|.|...
T Consensus 331 L~~N~l~~---~~~~~~~~L~~L~l~~N~~~~~~~~~ 364 (597)
T 3oja_B 331 LDHNSIVT---LKLSTHHTLKNLTLSHNDWDCNSLRA 364 (597)
T ss_dssp CCSSCCCC---CCCCTTCCCSEEECCSSCEEHHHHHH
T ss_pred CCCCCCCC---cChhhcCCCCEEEeeCCCCCChhHHH
Confidence 99999988 78888999999999999999987543
No 42
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=7.5e-35 Score=281.02 Aligned_cols=251 Identities=29% Similarity=0.431 Sum_probs=152.5
Q ss_pred cceeecccCcCCC--CCchhccCCCCcceeeccc-ccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeee
Q 035522 253 LIEWYLAYNNLVG--PLPKEVGNMKNLKILLLHR-NNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLV 329 (509)
Q Consensus 253 L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 329 (509)
+++|++++|.+.+ .+|..+..+++|++|++++ |.+.+.+|..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3444444444443 3444444444444444442 444444444444555555555555555444454555555555555
Q ss_pred CccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCC-CCCEEECcCCcCcccCcccccCCccCceeeeecccCC
Q 035522 330 LSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLT-NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLS 408 (509)
Q Consensus 330 ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~ 408 (509)
+++|.+++.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+++.+|..+..++ |+.|++++|.+.
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 555555555555555555555555555555555555555555 666666666666666666665555 666666666666
Q ss_pred CcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcccc---CCCeEecccCccccCCCCCC-
Q 035522 409 GIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVR---RIPKLIVSENNLELENSTSS- 484 (509)
Q Consensus 409 ~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l~~L~ls~N~l~~~~~ip~- 484 (509)
+..|..+..+++|++|++++|.+.+.+|. +..+++|++|++++|++++.+|..+. ++++|++++|++++ .+|.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~--~ip~~ 287 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCG--EIPQG 287 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEE--ECCCS
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccc--cCCCC
Confidence 66666666677777777777777655444 56667777777777777766665543 44577777777777 6776
Q ss_pred CCCCCCCccCcCCCcCCCCcccc
Q 035522 485 ENAPPPQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 485 ~~~~~l~~l~l~~N~~lc~~~~~ 507 (509)
..+++++.+++.+||++|+.++.
T Consensus 288 ~~l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 288 GNLQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp TTGGGSCGGGTCSSSEEESTTSS
T ss_pred ccccccChHHhcCCCCccCCCCC
Confidence 67788899999999999998765
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=3.4e-32 Score=265.06 Aligned_cols=288 Identities=22% Similarity=0.261 Sum_probs=164.6
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
++++++++++.+. .+|..+ .++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 5788888877776 566555 3677888888887776666677777778888888777777767777777777777777
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCC--CCchhccCCCCcceeecccccccC
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVG--PLPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~--~~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
+|.++ .+|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|+.|++++|.+++
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 77776 4444433 677777777777765444456666666666666666542 334444444 55555555555543
Q ss_pred cchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCC
Q 035522 290 PISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369 (509)
Q Consensus 290 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 369 (509)
+|..+. ++|++|++++|.+++..+.. +..+++|+.|++++|.+.+..+..+..
T Consensus 187 -l~~~~~--~~L~~L~l~~n~i~~~~~~~------------------------l~~l~~L~~L~L~~N~l~~~~~~~~~~ 239 (332)
T 2ft3_A 187 -IPKDLP--ETLNELHLDHNKIQAIELED------------------------LLRYSKLYRLGLGHNQIRMIENGSLSF 239 (332)
T ss_dssp -CCSSSC--SSCSCCBCCSSCCCCCCTTS------------------------STTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred -cCcccc--CCCCEEECCCCcCCccCHHH------------------------hcCCCCCCEEECCCCcCCcCChhHhhC
Confidence 222221 34444444444444433344 444444444444444444433334444
Q ss_pred CCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccC------CCcCCeEecccCcCC--cCChhhccC
Q 035522 370 LTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN------LTHLRQLDLSHNFIN--GTIPSQLGN 441 (509)
Q Consensus 370 l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~p~~~~~ 441 (509)
+++|++|++++|+++ .+|..+..+++|+.|++++|.+++..+..|.. .+.|+.|++++|.+. +..|..+..
T Consensus 240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~ 318 (332)
T 2ft3_A 240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318 (332)
T ss_dssp CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTT
T ss_pred CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccc
Confidence 444555555555444 34444444455555555555554333333322 245666667666665 445566666
Q ss_pred CCCCCEEeCcCCc
Q 035522 442 IPNISAVDLSKNN 454 (509)
Q Consensus 442 l~~L~~L~ls~N~ 454 (509)
+++|+.+++++|+
T Consensus 319 l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 319 VTDRLAIQFGNYK 331 (332)
T ss_dssp BCCSTTEEC----
T ss_pred cchhhhhhccccc
Confidence 6677777766653
No 44
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.3e-32 Score=263.68 Aligned_cols=288 Identities=21% Similarity=0.255 Sum_probs=230.0
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 185 (509)
.+++.++++++. +. .+|..+. ++|++|++++|.+.+..|..|.++++|++|++++|.+++..|..|.++++|++|+
T Consensus 33 c~l~~l~~~~~~-l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 108 (332)
T 2ft3_A 33 CHLRVVQCSDLG-LK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY 108 (332)
T ss_dssp EETTEEECCSSC-CS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred ccCCEEECCCCC-cc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence 479999999998 54 6676664 6899999999999988888999999999999999999988899999999999999
Q ss_pred CcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC--CCchhhhCCCCcceeecccCcC
Q 035522 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG--PIPSTLYHLNPLIEWYLAYNNL 263 (509)
Q Consensus 186 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~~ 263 (509)
+++|.++. +|..+. ++|++|++++|.+.+..+..+..+++|++|++++|.++. ..+..+..+ +|++|++++|.+
T Consensus 109 L~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l 184 (332)
T 2ft3_A 109 ISKNHLVE-IPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKL 184 (332)
T ss_dssp CCSSCCCS-CCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBC
T ss_pred CCCCcCCc-cCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCC
Confidence 99999984 455444 899999999999997777779999999999999999863 566777777 999999999999
Q ss_pred CCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccc
Q 035522 264 VGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREV 343 (509)
Q Consensus 264 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 343 (509)
++ +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|+++ .+|..+
T Consensus 185 ~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l 260 (332)
T 2ft3_A 185 TG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGL 260 (332)
T ss_dssp SS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTG
T ss_pred Cc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhh
Confidence 86 555443 79999999999999888788999999999999999999877778888889999999998887 567677
Q ss_pred cCCCCCCEEEcCCCcCCCCCccccCC------CCCCCEEECcCCcCc--ccCcccccCCccCceeeeecc
Q 035522 344 GNLKYLDSRSLDGNNLIGPIPPTIGY------LTNLTSLNLGYNQLS--SSIPPELMNCSQLQNLVLSHN 405 (509)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~--~~~~~~~~~~~~L~~L~L~~n 405 (509)
..+++|+.|++++|.+++..+..+.. .++|+.|++++|.+. +..+..+..+++|+.+++++|
T Consensus 261 ~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n 330 (332)
T 2ft3_A 261 PDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330 (332)
T ss_dssp GGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC---
T ss_pred hcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhcccc
Confidence 78888888888888877654444433 234555555555544 233444444444555444444
No 45
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.3e-37 Score=311.25 Aligned_cols=371 Identities=22% Similarity=0.190 Sum_probs=202.8
Q ss_pred CCcEEecCCCCCcceeC-chhccCCCCCCEEEccCCcCCc----cCCccccCCCCCcEEeccCCcCCCcCCccC-CCCC-
Q 035522 107 NLITFKISGTGFLSGRI-PSEIGALSKLQVLNLSQNHLTG----TIPSEIGSSRNLFQLDLSINILNGSIPLEI-GNLK- 179 (509)
Q Consensus 107 ~L~~L~l~~~~~~~~~~-~~~~~~l~~L~~L~L~~~~l~~----~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~-~~l~- 179 (509)
+|++|+++++. ++... ...+..+++|++|++++|.+.+ .++..+..+++|++|++++|.+....+..+ ..++
T Consensus 4 ~l~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 4 DIQSLDIQCEE-LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEESCC-CCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred cceehhhhhcc-cCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 34445554444 22221 1224444555555555555442 223344444555555555555443222111 1122
Q ss_pred ---CCCEEECcCCCCCC----CCcccccCCCCCCEEeccCCcCcccCCccc-----CCCCCCcEEECcCCCCCCC----C
Q 035522 180 ---DLDYLMLQGNKLDG----LIPSSIGNLTKLTGLNLSLNKLSGRLPREV-----GNLKILELLYLDSNNLTGP----I 243 (509)
Q Consensus 180 ---~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l-----~~l~~L~~L~l~~n~l~~~----~ 243 (509)
+|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++. +
T Consensus 83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l 162 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL 162 (461)
T ss_dssp TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence 45555555555542 234445555555555555555543222111 1234555566655555532 2
Q ss_pred chhhhCCCCcceeecccCcCCCCCchhcc-----CCCCcceeecccccccCc----chhhhcCCCCCCEEECcCCCCCCC
Q 035522 244 PSTLYHLNPLIEWYLAYNNLVGPLPKEVG-----NMKNLKILLLHRNNLTGP----ISSTIGYLNLLEILDLSHNRLDGP 314 (509)
Q Consensus 244 ~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~~~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~l~~~ 314 (509)
+..+..+++|++|++++|.+....+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++.
T Consensus 163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 242 (461)
T 1z7x_W 163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV 242 (461)
T ss_dssp HHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHH
T ss_pred HHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChH
Confidence 33444455666666666555432222221 244666677766666543 345555667777777777766532
Q ss_pred C-----ccccCCCCCcCeeeCccccCCcc----CcccccCCCCCCEEEcCCCcCCCCCccccC-----CCCCCCEEECcC
Q 035522 315 I-----PSTIGNLTNLTSLVLSSNQLSGL----LPREVGNLKYLDSRSLDGNNLIGPIPPTIG-----YLTNLTSLNLGY 380 (509)
Q Consensus 315 ~-----~~~~~~l~~L~~L~ls~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~L~~ 380 (509)
. +..+..+++|++|++++|.+++. ++..+..+++|+.|++++|.+.+..+..+. ..++|++|++++
T Consensus 243 ~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~ 322 (461)
T 1z7x_W 243 GMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS 322 (461)
T ss_dssp HHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTT
T ss_pred HHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCC
Confidence 1 22223466777777777776643 445555667777777777766543222221 235777777777
Q ss_pred CcCccc----CcccccCCccCceeeeecccCCCcCcccccC-----CCcCCeEecccCcCCc----CChhhccCCCCCCE
Q 035522 381 NQLSSS----IPPELMNCSQLQNLVLSHNTLSGIFPSEIGN-----LTHLRQLDLSHNFING----TIPSQLGNIPNISA 447 (509)
Q Consensus 381 n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~ 447 (509)
|.+++. ++..+..+++|++|++++|.+.+..+..+.. .++|++|++++|.+++ .+|..+..+++|++
T Consensus 323 n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~ 402 (461)
T 1z7x_W 323 CSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRE 402 (461)
T ss_dssp SCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCE
T ss_pred CCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccE
Confidence 777654 3445556677888888887776543333321 5678888888888775 56777777788888
Q ss_pred EeCcCCcCccc--------CCccccCCCeEecccCcccc
Q 035522 448 VDLSKNNLSGV--------VPASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 448 L~ls~N~l~~~--------~~~~~~~l~~L~ls~N~l~~ 478 (509)
|++++|++++. +|...+.++.|++.++.+..
T Consensus 403 L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~ 441 (461)
T 1z7x_W 403 LDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSE 441 (461)
T ss_dssp EECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCH
T ss_pred EECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCH
Confidence 88888887654 34444567777777766554
No 46
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=7.5e-32 Score=262.40 Aligned_cols=291 Identities=25% Similarity=0.308 Sum_probs=160.5
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
++++++++++.+. .+|..+. +++++|++++|.+++..+..|.++++|++|++++|.+++..|..+.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 5777888777776 5555443 577777777777776555567777777777777777776667777777777777777
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcc
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPI 291 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 291 (509)
+|.++ .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|.+.. .+..
T Consensus 109 ~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----------------------~~~~ 163 (330)
T 1xku_A 109 KNQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKS----------------------SGIE 163 (330)
T ss_dssp SSCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCG----------------------GGBC
T ss_pred CCcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCc----------------------cCcC
Confidence 77766 3444332 566666666666665444445555555555555555432 0122
Q ss_pred hhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCC
Q 035522 292 SSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLT 371 (509)
Q Consensus 292 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 371 (509)
+..+..+++|++|++++|.++. +|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..++
T Consensus 164 ~~~~~~l~~L~~L~l~~n~l~~-l~~~~--~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 240 (330)
T 1xku_A 164 NGAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 240 (330)
T ss_dssp TTGGGGCTTCCEEECCSSCCCS-CCSSC--CTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred hhhccCCCCcCEEECCCCcccc-CCccc--cccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCC
Confidence 3334444445555555544442 22222 14455555555555444444455555555555555555444444444455
Q ss_pred CCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccC------CCcCCeEecccCcCCc--CChhhccCCC
Q 035522 372 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGN------LTHLRQLDLSHNFING--TIPSQLGNIP 443 (509)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~l~~--~~p~~~~~l~ 443 (509)
+|++|++++|.++ .+|..+..+++|++|++++|++++..+..|.. .+.++.|++++|.+.. ..|..+..++
T Consensus 241 ~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~ 319 (330)
T 1xku_A 241 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVY 319 (330)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCC
T ss_pred CCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccccccc
Confidence 5555555555555 44444455555555555555555433333321 2455666666666542 3445555666
Q ss_pred CCCEEeCcCCc
Q 035522 444 NISAVDLSKNN 454 (509)
Q Consensus 444 ~L~~L~ls~N~ 454 (509)
.++.+++++|+
T Consensus 320 ~l~~l~L~~N~ 330 (330)
T 1xku_A 320 VRAAVQLGNYK 330 (330)
T ss_dssp CGGGEEC----
T ss_pred ceeEEEecccC
Confidence 66666666653
No 47
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.7e-33 Score=273.18 Aligned_cols=281 Identities=19% Similarity=0.235 Sum_probs=184.4
Q ss_pred cCchhHHHHHHHHHHhc-cCCCCCCCCCCC-CCCCCCCCCCCceecC---------CCCCEEEEEcCCCCCcccccccCC
Q 035522 31 LTASDASSAIQLEREAL-LNSGWWNSSWAT-ANYTSDHCKWMGITCN---------SAGSIVEISSYEMDNNGNAAELSQ 99 (509)
Q Consensus 31 ~~~~~~~~~l~~~~~~~-~~~~~~~~~w~~-~~~~~~~c~w~gv~c~---------~~~~v~~l~l~~~~~~~~~~~~~~ 99 (509)
....++++||++||.++ .++.++..+|.. .....++|.|.|+.|+ ..++++.|+++++.+. .+ +
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~l----p 97 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QF----P 97 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SC----C
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hc----C
Confidence 45568899999999988 466667788841 0136789999999995 2245666666665554 22 3
Q ss_pred CccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCC
Q 035522 100 FNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLK 179 (509)
Q Consensus 100 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~ 179 (509)
..+..+++|++|++++|. +. .+|..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+.+|..+..
T Consensus 98 ~~l~~l~~L~~L~L~~n~-l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~-- 172 (328)
T 4fcg_A 98 DQAFRLSHLQHMTIDAAG-LM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAS-- 172 (328)
T ss_dssp SCGGGGTTCSEEEEESSC-CC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEE--
T ss_pred hhhhhCCCCCEEECCCCC-cc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhh--
Confidence 445555555555555555 44 45555555555555555555555 44555555555555555555555455544332
Q ss_pred CCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecc
Q 035522 180 DLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLA 259 (509)
Q Consensus 180 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~ 259 (509)
. ..+..+.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|+++
T Consensus 173 ----~---------~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls 237 (328)
T 4fcg_A 173 ----T---------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLR 237 (328)
T ss_dssp ----E---------C-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECT
T ss_pred ----c---------cchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECc
Confidence 0 00011334677777777777766 566667777777777777777763 55567777777777777
Q ss_pred cCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCC
Q 035522 260 YNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLS 336 (509)
Q Consensus 260 ~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 336 (509)
+|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+.
T Consensus 238 ~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 238 GCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777777777777778888888877777777777777888888888888777788888888888888887766543
No 48
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=100.00 E-value=1.3e-31 Score=260.77 Aligned_cols=290 Identities=21% Similarity=0.250 Sum_probs=197.8
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 185 (509)
.+++.++++++. +. .+|..+. +++++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|+
T Consensus 31 c~l~~l~~~~~~-l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (330)
T 1xku_A 31 CHLRVVQCSDLG-LE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLY 106 (330)
T ss_dssp EETTEEECTTSC-CC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEE
T ss_pred CCCeEEEecCCC-cc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEE
Confidence 478999999887 44 5666554 6899999999999987777899999999999999999988899999999999999
Q ss_pred CcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC--CCchhhhCCCCcceeecccCcC
Q 035522 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG--PIPSTLYHLNPLIEWYLAYNNL 263 (509)
Q Consensus 186 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~~ 263 (509)
+++|.++. +|..+. ++|++|++++|.+.+..+..+.++++|++|++++|.+.. ..+..+..+++|++|++++|.+
T Consensus 107 Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l 183 (330)
T 1xku_A 107 LSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI 183 (330)
T ss_dssp CCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCC
T ss_pred CCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcc
Confidence 99999984 454443 799999999999998777789999999999999999863 5556677777777777777776
Q ss_pred CCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccc
Q 035522 264 VGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREV 343 (509)
Q Consensus 264 ~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~ 343 (509)
+. +|..+. ++|++|++++|.+++..+..+..+++|++|++++|.++ +..+..+
T Consensus 184 ~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~------------------------~~~~~~~ 236 (330)
T 1xku_A 184 TT-IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS------------------------AVDNGSL 236 (330)
T ss_dssp CS-CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC------------------------EECTTTG
T ss_pred cc-CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCc------------------------eeChhhc
Confidence 63 333221 45555555555555444444444555555555555444 4333344
Q ss_pred cCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccC------CccCceeeeecccCCC--cCcccc
Q 035522 344 GNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMN------CSQLQNLVLSHNTLSG--IFPSEI 415 (509)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------~~~L~~L~L~~n~l~~--~~~~~~ 415 (509)
..+++|+.|++++|.++ .+|..+..+++|++|++++|++++..+..+.. .+.++.|++++|.+.. ..|..|
T Consensus 237 ~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f 315 (330)
T 1xku_A 237 ANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTF 315 (330)
T ss_dssp GGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGG
T ss_pred cCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCcccc
Confidence 44455555555555444 34444555555555555555555433333321 2556667777776642 445667
Q ss_pred cCCCcCCeEecccCc
Q 035522 416 GNLTHLRQLDLSHNF 430 (509)
Q Consensus 416 ~~l~~L~~L~L~~n~ 430 (509)
..+.+++.+++++|+
T Consensus 316 ~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 316 RCVYVRAAVQLGNYK 330 (330)
T ss_dssp TTCCCGGGEEC----
T ss_pred ccccceeEEEecccC
Confidence 777777777777764
No 49
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=100.00 E-value=9.2e-36 Score=303.88 Aligned_cols=380 Identities=18% Similarity=0.113 Sum_probs=297.1
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcce----eCchhccCCCCCCEEEccCCcCCccCCccc-c
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSG----RIPSEIGALSKLQVLNLSQNHLTGTIPSEI-G 152 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l-~ 152 (509)
.++++|+++++.+..... ...+..+++|++|++++|. +.+ .++..+..+++|++|++++|.+.+..+..+ .
T Consensus 3 ~~l~~L~Ls~~~l~~~~~---~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~ 78 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARW---AELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQ 78 (461)
T ss_dssp EEEEEEEEESCCCCHHHH---HHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHH
T ss_pred ccceehhhhhcccCchhH---HHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHH
Confidence 468899999998876441 2236789999999999999 654 457778899999999999999886544444 3
Q ss_pred CCC----CCcEEeccCCcCCC----cCCccCCCCCCCCEEECcCCCCCCCCcccc-----cCCCCCCEEeccCCcCcccC
Q 035522 153 SSR----NLFQLDLSINILNG----SIPLEIGNLKDLDYLMLQGNKLDGLIPSSI-----GNLTKLTGLNLSLNKLSGRL 219 (509)
Q Consensus 153 ~l~----~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l-----~~l~~L~~L~l~~n~l~~~~ 219 (509)
.++ +|++|++++|.++. .++..+..+++|++|++++|.+++..+..+ ...++|++|++++|.+++..
T Consensus 79 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~ 158 (461)
T 1z7x_W 79 GLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS 158 (461)
T ss_dssp TTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG
T ss_pred HHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHH
Confidence 455 79999999999984 458889999999999999999875444332 23678999999999988643
Q ss_pred ----CcccCCCCCCcEEECcCCCCCCCCchhhh-----CCCCcceeecccCcCCCC----CchhccCCCCcceeeccccc
Q 035522 220 ----PREVGNLKILELLYLDSNNLTGPIPSTLY-----HLNPLIEWYLAYNNLVGP----LPKEVGNMKNLKILLLHRNN 286 (509)
Q Consensus 220 ----~~~l~~l~~L~~L~l~~n~l~~~~~~~l~-----~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~L~~n~ 286 (509)
+..+..+++|++|++++|.+++..+..+. ..++|++|++++|.++.. ++..+..+++|++|++++|.
T Consensus 159 ~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~ 238 (461)
T 1z7x_W 159 CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238 (461)
T ss_dssp HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSB
T ss_pred HHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCc
Confidence 55567789999999999998754444443 366999999999999874 46677788999999999998
Q ss_pred ccCcc-----hhhhcCCCCCCEEECcCCCCCCC----CccccCCCCCcCeeeCccccCCccCccccc-----CCCCCCEE
Q 035522 287 LTGPI-----SSTIGYLNLLEILDLSHNRLDGP----IPSTIGNLTNLTSLVLSSNQLSGLLPREVG-----NLKYLDSR 352 (509)
Q Consensus 287 ~~~~~-----~~~~~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-----~l~~L~~L 352 (509)
+++.. +..+..+++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+. ..++|+.|
T Consensus 239 l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L 318 (461)
T 1z7x_W 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL 318 (461)
T ss_dssp CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEE
T ss_pred CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceee
Confidence 87542 22334689999999999999864 566777799999999999998754333332 34699999
Q ss_pred EcCCCcCCCC----CccccCCCCCCCEEECcCCcCcccCcccccC-----CccCceeeeecccCCC----cCcccccCCC
Q 035522 353 SLDGNNLIGP----IPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-----CSQLQNLVLSHNTLSG----IFPSEIGNLT 419 (509)
Q Consensus 353 ~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-----~~~L~~L~L~~n~l~~----~~~~~~~~l~ 419 (509)
++++|.+++. ++..+..+++|++|++++|.+++..+..+.. .++|++|++++|.+++ .+|..+..++
T Consensus 319 ~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~ 398 (461)
T 1z7x_W 319 WVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANH 398 (461)
T ss_dssp ECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCC
T ss_pred EcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCC
Confidence 9999998865 4556677899999999999998654443332 6799999999999986 6788888899
Q ss_pred cCCeEecccCcCCcCChhh----cc-CCCCCCEEeCcCCcCcccCCc
Q 035522 420 HLRQLDLSHNFINGTIPSQ----LG-NIPNISAVDLSKNNLSGVVPA 461 (509)
Q Consensus 420 ~L~~L~L~~n~l~~~~p~~----~~-~l~~L~~L~ls~N~l~~~~~~ 461 (509)
+|++|++++|++++..... +. ...+|+.|++.++.+....++
T Consensus 399 ~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~ 445 (461)
T 1z7x_W 399 SLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMED 445 (461)
T ss_dssp CCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHH
T ss_pred CccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHH
Confidence 9999999999998653222 22 345799999998887755443
No 50
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.9e-29 Score=239.84 Aligned_cols=230 Identities=26% Similarity=0.280 Sum_probs=104.2
Q ss_pred CCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC--CCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceee
Q 035522 204 KLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG--PIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILL 281 (509)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~--~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 281 (509)
+|++|++++|.++...+..+.++++|++|++++|.++. ..+..+..+++|++|++++|.+.. +|..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCEEE
Confidence 34444444444442222233444444444444444431 112333334444444444443331 233344445555555
Q ss_pred cccccccCcch-hhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCC
Q 035522 282 LHRNNLTGPIS-STIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLI 360 (509)
Q Consensus 282 L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 360 (509)
+++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---------------------- 165 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN---------------------- 165 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGG----------------------
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccc----------------------
Confidence 55554443322 2344444444555544444444444444444444444444444330
Q ss_pred CCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhcc
Q 035522 361 GPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLG 440 (509)
Q Consensus 361 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~ 440 (509)
.+|..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.
T Consensus 166 -~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~ 244 (306)
T 2z66_A 166 -FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQ 244 (306)
T ss_dssp -EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCC
T ss_pred -cchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHH
Confidence 2333444444455555555544444444444455555555555555444444445555555555555555555555555
Q ss_pred CCC-CCCEEeCcCCcCcc
Q 035522 441 NIP-NISAVDLSKNNLSG 457 (509)
Q Consensus 441 ~l~-~L~~L~ls~N~l~~ 457 (509)
.++ +|++|++++|++++
T Consensus 245 ~~~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 245 HFPSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CCCTTCCEEECTTCCEEC
T ss_pred hhhccCCEEEccCCCeec
Confidence 542 55555555555543
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=9.1e-29 Score=237.99 Aligned_cols=247 Identities=23% Similarity=0.230 Sum_probs=141.8
Q ss_pred EEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCC--CcccccCCCCCCEEeccC
Q 035522 135 VLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGL--IPSSIGNLTKLTGLNLSL 212 (509)
Q Consensus 135 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~l~~ 212 (509)
.++++++.++ .+|..+ .++|++|++++|.++...+..|.++++|++|++++|.++.. .+..+..+++|++|++++
T Consensus 11 ~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~ 87 (306)
T 2z66_A 11 EIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSF 87 (306)
T ss_dssp EEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCS
T ss_pred EEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCC
Confidence 4455554444 334332 14555555555555532222345555555555555555422 133444555666666666
Q ss_pred CcCcccCCcccCCCCCCcEEECcCCCCCCCCc-hhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccC-c
Q 035522 213 NKLSGRLPREVGNLKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG-P 290 (509)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~-~ 290 (509)
|.+. .+|..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++ .
T Consensus 88 n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 166 (306)
T 2z66_A 88 NGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF 166 (306)
T ss_dssp CSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGE
T ss_pred Cccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCcccccc
Confidence 6555 334445555666666666655553322 344555555555555555555555556666666666666666654 3
Q ss_pred chhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCC
Q 035522 291 ISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL 370 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 370 (509)
.|..+..+++|++|++++|.+++..|..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus 167 ~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~ 246 (306)
T 2z66_A 167 LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHF 246 (306)
T ss_dssp ECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCC
T ss_pred chhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhh
Confidence 55566666667777777776665556666666667777777766665555556666666667776666666666666665
Q ss_pred C-CCCEEECcCCcCcc
Q 035522 371 T-NLTSLNLGYNQLSS 385 (509)
Q Consensus 371 ~-~L~~L~L~~n~l~~ 385 (509)
+ +|++|++++|.+.+
T Consensus 247 ~~~L~~L~L~~N~~~~ 262 (306)
T 2z66_A 247 PSSLAFLNLTQNDFAC 262 (306)
T ss_dssp CTTCCEEECTTCCEEC
T ss_pred hccCCEEEccCCCeec
Confidence 3 66666666666654
No 52
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=5.8e-29 Score=244.33 Aligned_cols=283 Identities=20% Similarity=0.231 Sum_probs=149.0
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 130 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
|+.....+++++.++ .+|..+. ++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|+
T Consensus 30 C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 106 (353)
T 2z80_A 30 CDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLD 106 (353)
T ss_dssp ECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred CCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEE
Confidence 344445566666665 4454432 3566666666665544444555555566666655555555445555555555555
Q ss_pred ccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeeccccc-cc
Q 035522 210 LSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNN-LT 288 (509)
Q Consensus 210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~-~~ 288 (509)
+++|.+++..+..+.++++|++|++++|.+++ +|. ...+..+++|++|++++|. ++
T Consensus 107 Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-l~~----------------------~~~~~~l~~L~~L~l~~n~~~~ 163 (353)
T 2z80_A 107 LSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKT-LGE----------------------TSLFSHLTKLQILRVGNMDTFT 163 (353)
T ss_dssp CCSSCCSSCCHHHHTTCTTCSEEECTTCCCSS-SCS----------------------SCSCTTCTTCCEEEEEESSSCC
T ss_pred CCCCcCCcCCHhHhCCCccCCEEECCCCCCcc-cCc----------------------hhhhccCCCCcEEECCCCcccc
Confidence 55555553333334555555555555555442 221 0234445555555555552 33
Q ss_pred CcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccC
Q 035522 289 GPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIG 368 (509)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 368 (509)
+..+..+..+++|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|+.|++++|.+.+..+..+.
T Consensus 164 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~ 243 (353)
T 2z80_A 164 KIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELS 243 (353)
T ss_dssp EECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC---
T ss_pred ccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccc
Confidence 33344455555555555555555555555555556666666666555432222233455555566655555543222111
Q ss_pred CCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCC----cCcccccCCCcCCeEecccCcCCcCChhh-ccCCC
Q 035522 369 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSG----IFPSEIGNLTHLRQLDLSHNFINGTIPSQ-LGNIP 443 (509)
Q Consensus 369 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~ 443 (509)
. ....+.++.++++++.+.+ .+|..+..+++|++|++++|+++ .+|.. +..++
T Consensus 244 ~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~ 301 (353)
T 2z80_A 244 T---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLT 301 (353)
T ss_dssp ------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCT
T ss_pred c---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCC
Confidence 0 1122334445555554443 34556677777777777777777 44444 46777
Q ss_pred CCCEEeCcCCcCcccCC
Q 035522 444 NISAVDLSKNNLSGVVP 460 (509)
Q Consensus 444 ~L~~L~ls~N~l~~~~~ 460 (509)
+|++|++++|++++..|
T Consensus 302 ~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 302 SLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp TCCEEECCSSCBCCCHH
T ss_pred CCCEEEeeCCCccCcCC
Confidence 77777777777776544
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=1.4e-28 Score=241.69 Aligned_cols=280 Identities=21% Similarity=0.236 Sum_probs=157.4
Q ss_pred CCCCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCc
Q 035522 63 TSDHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH 142 (509)
Q Consensus 63 ~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 142 (509)
....|.|.++ |+ .+++.++.. +..+ .++|++|++++|. +++..+..+.++++|++|++++|.
T Consensus 26 ~~~~C~~~~~-c~---------~~~~~l~~i-----P~~~--~~~L~~L~l~~n~-i~~~~~~~~~~l~~L~~L~L~~n~ 87 (353)
T 2z80_A 26 ASLSCDRNGI-CK---------GSSGSLNSI-----PSGL--TEAVKSLDLSNNR-ITYISNSDLQRCVNLQALVLTSNG 87 (353)
T ss_dssp -CCEECTTSE-EE---------CCSTTCSSC-----CTTC--CTTCCEEECTTSC-CCEECTTTTTTCTTCCEEECTTSC
T ss_pred cCCCCCCCeE-ee---------CCCCCcccc-----cccc--cccCcEEECCCCc-CcccCHHHhccCCCCCEEECCCCc
Confidence 4567888876 53 344444432 2222 2467777777777 555545567777777777777777
Q ss_pred CCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCc-ccccCCCCCCEEeccCCc-CcccCC
Q 035522 143 LTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIP-SSIGNLTKLTGLNLSLNK-LSGRLP 220 (509)
Q Consensus 143 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~-l~~~~~ 220 (509)
+.+..+..|+++++|++|++++|.+++..+..+.++++|++|++++|.+++..+ ..+.++++|++|++++|. +....+
T Consensus 88 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 167 (353)
T 2z80_A 88 INTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR 167 (353)
T ss_dssp CCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT
T ss_pred cCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCH
Confidence 776666667777777777777777664333336666667777776666664333 355666666666666663 444444
Q ss_pred cccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCC
Q 035522 221 REVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNL 300 (509)
Q Consensus 221 ~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~ 300 (509)
..+.++++|++|++++|.+++..|..+..+++| ++|++++|.++......+..+++
T Consensus 168 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L------------------------~~L~l~~n~l~~~~~~~~~~~~~ 223 (353)
T 2z80_A 168 KDFAGLTFLEELEIDASDLQSYEPKSLKSIQNV------------------------SHLILHMKQHILLLEIFVDVTSS 223 (353)
T ss_dssp TTTTTCCEEEEEEEEETTCCEECTTTTTTCSEE------------------------EEEEEECSCSTTHHHHHHHHTTT
T ss_pred HHccCCCCCCEEECCCCCcCccCHHHHhccccC------------------------CeecCCCCccccchhhhhhhccc
Confidence 555566666666666665554444444444444 44444444443222222333455
Q ss_pred CCEEECcCCCCCCCCcccc---CCCCCcCeeeCccccCCc----cCcccccCCCCCCEEEcCCCcCCCCCccc-cCCCCC
Q 035522 301 LEILDLSHNRLDGPIPSTI---GNLTNLTSLVLSSNQLSG----LLPREVGNLKYLDSRSLDGNNLIGPIPPT-IGYLTN 372 (509)
Q Consensus 301 L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~l~~ 372 (509)
|++|++++|.+++..+..+ .....++.++++++.+.+ .+|..+..+++|+.|++++|+++ .+|.. +..+++
T Consensus 224 L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~ 302 (353)
T 2z80_A 224 VECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTS 302 (353)
T ss_dssp EEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTT
T ss_pred ccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCC
Confidence 5555555555543322211 123445555555555543 24455566666666666666666 33433 356666
Q ss_pred CCEEECcCCcCcc
Q 035522 373 LTSLNLGYNQLSS 385 (509)
Q Consensus 373 L~~L~L~~n~l~~ 385 (509)
|++|++++|.+.+
T Consensus 303 L~~L~L~~N~~~~ 315 (353)
T 2z80_A 303 LQKIWLHTNPWDC 315 (353)
T ss_dssp CCEEECCSSCBCC
T ss_pred CCEEEeeCCCccC
Confidence 6666666666654
No 54
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.6e-28 Score=238.08 Aligned_cols=225 Identities=20% Similarity=0.190 Sum_probs=168.6
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEec
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL 210 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 210 (509)
.++++|++++|.+. .+|..+.++++|++|++++|.+. .+|..++++++|++|++++|.++ .+|..+.++++|++|++
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSI 157 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEE
T ss_pred cceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEEC
Confidence 34444444444444 34444444444444444444444 44444444444444444444444 33444445555555555
Q ss_pred cCCcCcccCCcc---------cCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceee
Q 035522 211 SLNKLSGRLPRE---------VGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILL 281 (509)
Q Consensus 211 ~~n~l~~~~~~~---------l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~ 281 (509)
++|.+.+.+|.. +.++++|++|++++|.++ .+|..+..+++|++|++++|.+++ +|..+..+++|++|+
T Consensus 158 ~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~ 235 (328)
T 4fcg_A 158 RACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235 (328)
T ss_dssp EEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEE
T ss_pred CCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEE
Confidence 554444444443 445999999999999999 789999999999999999999995 566799999999999
Q ss_pred cccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCC
Q 035522 282 LHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLI 360 (509)
Q Consensus 282 L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 360 (509)
+++|.+.+.+|..++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++++.+++..+.+.
T Consensus 236 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 236 LRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred CcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999877554
No 55
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.96 E-value=5.2e-28 Score=244.73 Aligned_cols=228 Identities=21% Similarity=0.227 Sum_probs=124.6
Q ss_pred CcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcC
Q 035522 276 NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLD 355 (509)
Q Consensus 276 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 355 (509)
+++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..+..+++|++|+++
T Consensus 65 ~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 144 (440)
T 3zyj_A 65 NTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLR 144 (440)
T ss_dssp TCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECC
T ss_pred CCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCC
Confidence 44444444444444444444445555555555555444444444455555555555555544433344455555555555
Q ss_pred CCcCCCCCccccCCCCCCCEEECcCCc-CcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcC
Q 035522 356 GNNLIGPIPPTIGYLTNLTSLNLGYNQ-LSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 356 ~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
+|.+.+..+..+..+++|++|++++|+ +....+..+..+++|++|++++|.+. .+| .+..+++|++|++++|.+.+.
T Consensus 145 ~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~ 222 (440)
T 3zyj_A 145 NNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAI 222 (440)
T ss_dssp SCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEE
T ss_pred CCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCcc
Confidence 555544434445555555555555532 22222334555555666666666555 233 255566666666666666655
Q ss_pred ChhhccCCCCCCEEeCcCCcCcccCCccc---cCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCccccC
Q 035522 435 IPSQLGNIPNISAVDLSKNNLSGVVPASV---RRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 435 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
.|..|..+++|+.|++++|++++..+..| .+|++|++++|++++ +|. ..+++++.+++.+||+.|+|.+.|
T Consensus 223 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~Np~~CdC~l~~ 299 (440)
T 3zyj_A 223 RPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTL---LPHDLFTPLHHLERIHLHHNPWNCNCDILW 299 (440)
T ss_dssp CTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCC---CCTTTTSSCTTCCEEECCSSCEECSSTTHH
T ss_pred ChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCc---cChhHhccccCCCEEEcCCCCccCCCCchH
Confidence 56666666666666666666665555433 344466666666665 444 445677777888888888887665
No 56
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.96 E-value=6.4e-28 Score=244.94 Aligned_cols=229 Identities=19% Similarity=0.173 Sum_probs=135.3
Q ss_pred CCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEc
Q 035522 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSL 354 (509)
Q Consensus 275 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L 354 (509)
++++.|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 34555555555555444455555555555555555555444455555555555555555555444444555555555555
Q ss_pred CCCcCCCCCccccCCCCCCCEEECcCCc-CcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCc
Q 035522 355 DGNNLIGPIPPTIGYLTNLTSLNLGYNQ-LSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFING 433 (509)
Q Consensus 355 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 433 (509)
++|.+.+..+..+..+++|++|++++|. +....+..+..+++|+.|++++|.+.+. | .+..+++|++|++++|.+.+
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~ 232 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPE 232 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSE
T ss_pred CCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcc
Confidence 5555554444455555666666665532 3322333455566666666666666532 3 35566666666666666666
Q ss_pred CChhhccCCCCCCEEeCcCCcCcccCCccc---cCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCcccc
Q 035522 434 TIPSQLGNIPNISAVDLSKNNLSGVVPASV---RRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 434 ~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~~~ 507 (509)
..|..|..+++|+.|++++|++++..+..+ .+|++|++++|++++ +|. ..+++++.+++.+||+.|+|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSS---LPHDLFTPLRYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSC---CCTTSSTTCTTCCEEECCSSCEECSTTTH
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCc---cChHHhccccCCCEEEccCCCcCCCCCch
Confidence 666666666677777777776666655443 344567777777665 554 45667778888888888888776
Q ss_pred C
Q 035522 508 R 508 (509)
Q Consensus 508 ~ 508 (509)
|
T Consensus 310 ~ 310 (452)
T 3zyi_A 310 W 310 (452)
T ss_dssp H
T ss_pred H
Confidence 5
No 57
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.96 E-value=7.1e-28 Score=229.25 Aligned_cols=225 Identities=24% Similarity=0.225 Sum_probs=118.5
Q ss_pred CEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCC
Q 035522 134 QVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN 213 (509)
Q Consensus 134 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (509)
++++.+++.+. .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|.+++..+..+.++++|++|++++|
T Consensus 14 ~~~~c~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 90 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90 (285)
T ss_dssp CEEECCSSCCS-SCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred eEEEcCcCCcc-cCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCC
Confidence 45555555555 334332 345566666666555444445555555555555555555554555555555555555555
Q ss_pred c-CcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcch
Q 035522 214 K-LSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPIS 292 (509)
Q Consensus 214 ~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~ 292 (509)
. +....+..+..+++|++|++++|.+++.. +..+..+++|++|++++|.+++..+
T Consensus 91 ~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~------------------------~~~~~~l~~L~~L~l~~n~l~~~~~ 146 (285)
T 1ozn_A 91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELG------------------------PGLFRGLAALQYLYLQDNALQALPD 146 (285)
T ss_dssp TTCCCCCTTTTTTCTTCCEEECTTSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred CCccccCHHHhcCCcCCCEEECCCCcCCEEC------------------------HhHhhCCcCCCEEECCCCcccccCH
Confidence 4 44333444555555555555555544333 3334444444555555444444333
Q ss_pred hhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCC
Q 035522 293 STIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTN 372 (509)
Q Consensus 293 ~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 372 (509)
..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+++..+..+..+++
T Consensus 147 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 226 (285)
T 1ozn_A 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRA 226 (285)
T ss_dssp TTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTT
T ss_pred hHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcc
Confidence 34445555555555555555433334555555555555555555555555555555666666666555544444555666
Q ss_pred CCEEECcCCcCcc
Q 035522 373 LTSLNLGYNQLSS 385 (509)
Q Consensus 373 L~~L~L~~n~l~~ 385 (509)
|++|++++|.+..
T Consensus 227 L~~L~l~~N~~~c 239 (285)
T 1ozn_A 227 LQYLRLNDNPWVC 239 (285)
T ss_dssp CCEEECCSSCEEC
T ss_pred cCEEeccCCCccC
Confidence 6666666665553
No 58
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=2.3e-31 Score=280.02 Aligned_cols=201 Identities=15% Similarity=0.050 Sum_probs=90.4
Q ss_pred CCCCCcEEecCCCCCcceeCchhccC-CC-CCCEEEccCCc-CCc-cCCccccCCCCCcEEeccCCcCCCc----CCccC
Q 035522 104 CFPNLITFKISGTGFLSGRIPSEIGA-LS-KLQVLNLSQNH-LTG-TIPSEIGSSRNLFQLDLSINILNGS----IPLEI 175 (509)
Q Consensus 104 ~l~~L~~L~l~~~~~~~~~~~~~~~~-l~-~L~~L~L~~~~-l~~-~~~~~l~~l~~L~~L~L~~n~~~~~----~p~~~ 175 (509)
.+++|++|++++|. +++..+..+.. ++ +|++|++++|. +.. .++....++++|++|++++|.+++. ++..+
T Consensus 110 ~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~ 188 (592)
T 3ogk_B 110 NLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELA 188 (592)
T ss_dssp HCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHH
T ss_pred hCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHH
Confidence 45666666666665 44444444433 22 26666665554 110 1112223455666666666655433 22223
Q ss_pred CCCCCCCEEECcCCCCCC----CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCC---CCCchhhh
Q 035522 176 GNLKDLDYLMLQGNKLDG----LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT---GPIPSTLY 248 (509)
Q Consensus 176 ~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l~ 248 (509)
..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+..+++|++|+++..... ...+..+.
T Consensus 189 ~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~ 267 (592)
T 3ogk_B 189 QHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLV 267 (592)
T ss_dssp HHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCC
T ss_pred hcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHhh
Confidence 345556666666655542 222233455566666666655543 3344455555555555432111 11222333
Q ss_pred CCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcch-hhhcCCCCCCEEECc
Q 035522 249 HLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPIS-STIGYLNLLEILDLS 307 (509)
Q Consensus 249 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~ 307 (509)
.+++|+.++++++. ...+|..+..+++|++|++++|.+++... ..+..+++|++|+++
T Consensus 268 ~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~ 326 (592)
T 3ogk_B 268 FPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR 326 (592)
T ss_dssp CCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE
T ss_pred ccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc
Confidence 44444444444421 12333334444455555555444332211 223444445555444
No 59
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=5.9e-31 Score=276.92 Aligned_cols=375 Identities=11% Similarity=0.040 Sum_probs=180.5
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCC-CCC-CcEEecCCCCCcce-eCchhccCCCCCCEEEccCCcCCcc----CCcc
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTC-FPN-LITFKISGTGFLSG-RIPSEIGALSKLQVLNLSQNHLTGT----IPSE 150 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~-l~~-L~~L~l~~~~~~~~-~~~~~~~~l~~L~~L~L~~~~l~~~----~~~~ 150 (509)
.++++|+++++.+++.. ...+.. ++. |++|++++|..+.. .++.....+++|++|++++|.+.+. ++..
T Consensus 112 ~~L~~L~L~~~~i~~~~----~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~ 187 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLD----LDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHEL 187 (592)
T ss_dssp TTCCEEEEESCBCCHHH----HHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHH
T ss_pred CCCCeEEeeccEecHHH----HHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHH
Confidence 34555666555544332 222222 223 66666655541111 1222233556666666666655433 2223
Q ss_pred ccCCCCCcEEeccCCcCCC----cCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCc---ccCCccc
Q 035522 151 IGSSRNLFQLDLSINILNG----SIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS---GRLPREV 223 (509)
Q Consensus 151 l~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~---~~~~~~l 223 (509)
+..+++|++|++++|.+++ .++..+.++++|++|++++|.+.+ ++..+.++++|++|+++..... ...+..+
T Consensus 188 ~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l 266 (592)
T 3ogk_B 188 AQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL 266 (592)
T ss_dssp HHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred HhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence 3445666666666665541 223333455666666666665553 3455555666666666542211 1223344
Q ss_pred CCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCc-hhccCCCCcceeecccccccCcchhhhcCCCCCC
Q 035522 224 GNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLP-KEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLE 302 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 302 (509)
..+++|+.|+++++. ...+|..+..+++|++|++++|.+++... ..+..+++|+.|+++++...+.++.....+++|+
T Consensus 267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~ 345 (592)
T 3ogk_B 267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLK 345 (592)
T ss_dssp CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCC
T ss_pred hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCC
Confidence 555566666665542 22445555555666666666655433222 2245556666666653222222333334455666
Q ss_pred EEECcC-----------CCCCCC-CccccCCCCCcCeeeCccccCCccCcccccC-CCCCCEEEcC----CCcCCCC---
Q 035522 303 ILDLSH-----------NRLDGP-IPSTIGNLTNLTSLVLSSNQLSGLLPREVGN-LKYLDSRSLD----GNNLIGP--- 362 (509)
Q Consensus 303 ~L~l~~-----------n~l~~~-~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~-l~~L~~L~L~----~n~l~~~--- 362 (509)
+|++++ +.+++. ++.....+++|++|+++.+.+++..+..+.. +++|+.|+++ .|.+++.
T Consensus 346 ~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~ 425 (592)
T 3ogk_B 346 RLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLD 425 (592)
T ss_dssp EEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCH
T ss_pred EEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHH
Confidence 666662 233321 1111233556666666555555444444433 5566666664 3344431
Q ss_pred --CccccCCCCCCCEEECcCCc--CcccCcccc-cCCccCceeeeecccCCC-cCcccccCCCcCCeEecccCcCCcC-C
Q 035522 363 --IPPTIGYLTNLTSLNLGYNQ--LSSSIPPEL-MNCSQLQNLVLSHNTLSG-IFPSEIGNLTHLRQLDLSHNFINGT-I 435 (509)
Q Consensus 363 --~~~~~~~l~~L~~L~L~~n~--l~~~~~~~~-~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~-~ 435 (509)
++..+..+++|++|++++|. +++.....+ ..+++|++|++++|.+++ .++..+..+++|++|++++|.+++. +
T Consensus 426 ~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 426 NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 22223445566666665432 333222222 225556666666666553 2233345556666666666665433 2
Q ss_pred hhhccCCCCCCEEeCcCCcCccc
Q 035522 436 PSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 436 p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
+..+..+++|++|++++|++++.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHHHhcCccCeeECcCCcCCHH
Confidence 23334556666666666665544
No 60
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=9.6e-28 Score=228.35 Aligned_cols=140 Identities=26% Similarity=0.237 Sum_probs=65.0
Q ss_pred ccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccC
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 397 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 397 (509)
.+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|
T Consensus 100 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 179 (285)
T 1ozn_A 100 TFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179 (285)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTC
T ss_pred HhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCcccc
Confidence 33333444444444444433333333444444444444444443333334444444444444444443333334444555
Q ss_pred ceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcc
Q 035522 398 QNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 398 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
+.|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++..
T Consensus 180 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c 239 (285)
T 1ozn_A 180 DRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (285)
T ss_dssp CEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred CEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccC
Confidence 555555555554444455555555555555555554444445555555555555555543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=8.2e-27 Score=236.75 Aligned_cols=246 Identities=22% Similarity=0.176 Sum_probs=157.9
Q ss_pred CcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECc
Q 035522 108 LITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQ 187 (509)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 187 (509)
.+.++.++.. ++ .+|..+. +++++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|+++
T Consensus 56 ~~~v~c~~~~-l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRG-LS-EVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSC-CS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCC-cC-ccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4566666665 33 4555443 578888888888887777788888888888888888887777778888888888888
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCc-hhhhCCCCcceeecccCcCCCC
Q 035522 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGP 266 (509)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~ 266 (509)
+|.+++..+..+.++++|++|++++|.+....+..|.++++|++|++++|...+.++ ..+..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 888877666667788888888888888876666677778888888887744333333 2455566666666666665532
Q ss_pred CchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCC
Q 035522 267 LPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNL 346 (509)
Q Consensus 267 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 346 (509)
| .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 2 24455555555555555555545555555555555555555554444455555555555555555554444444455
Q ss_pred CCCCEEEcCCCcC
Q 035522 347 KYLDSRSLDGNNL 359 (509)
Q Consensus 347 ~~L~~L~L~~n~l 359 (509)
++|+.|++++|.+
T Consensus 290 ~~L~~L~L~~Np~ 302 (452)
T 3zyi_A 290 RYLVELHLHHNPW 302 (452)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEccCCCc
Confidence 5555555555543
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=1.4e-26 Score=234.22 Aligned_cols=246 Identities=22% Similarity=0.192 Sum_probs=172.8
Q ss_pred CcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECc
Q 035522 108 LITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQ 187 (509)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 187 (509)
.+.++.++.. ++ .+|..+. +++++|++++|.+.+..+..|.++++|++|+|++|.+.+..+..|.++++|++|+++
T Consensus 45 ~~~v~c~~~~-l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKN-LR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCC-CS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCC-cC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 4567776666 33 5666554 578899999998887777888888999999999998887777788888889999998
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCc-hhhhCCCCcceeecccCcCCCC
Q 035522 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIP-STLYHLNPLIEWYLAYNNLVGP 266 (509)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~ 266 (509)
+|+++...+..+..+++|++|++++|.+....+..|..+++|++|++++|...+.++ ..+..+++|++|++++|.++.
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE- 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS-
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc-
Confidence 888887766678888888888888888887666778888888888888854333333 356666777777777776663
Q ss_pred CchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCC
Q 035522 267 LPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNL 346 (509)
Q Consensus 267 ~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 346 (509)
+| .+..+++|+.|++++|.+++..+..+..+++|+.|++++|.+++..+..|..+++|++|++++|++++..+..+..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 23 25556666666666666665555566666666666666666665555556666666666666666665555555555
Q ss_pred CCCCEEEcCCCcC
Q 035522 347 KYLDSRSLDGNNL 359 (509)
Q Consensus 347 ~~L~~L~L~~n~l 359 (509)
++|+.|++++|.+
T Consensus 279 ~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 279 HHLERIHLHHNPW 291 (440)
T ss_dssp TTCCEEECCSSCE
T ss_pred cCCCEEEcCCCCc
Confidence 6666666666554
No 63
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=1.3e-28 Score=237.45 Aligned_cols=246 Identities=22% Similarity=0.222 Sum_probs=130.6
Q ss_pred CCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCC-CCCchhhh-------CCCCcceeecccCcCCCCCchhc--
Q 035522 202 LTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT-GPIPSTLY-------HLNPLIEWYLAYNNLVGPLPKEV-- 271 (509)
Q Consensus 202 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~l~-------~~~~L~~L~l~~n~~~~~~~~~l-- 271 (509)
.++|+++++++|.+ .+|..+... |++|++++|.+. ..++..+. .+++|++|++++|.+++.+|..+
T Consensus 42 ~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred CCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 34444445554444 333333221 444455544442 22333333 45555555555555555555443
Q ss_pred cCCCCcceeecccccccCcchhhhcCC-----CCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCcc--Ccccc-
Q 035522 272 GNMKNLKILLLHRNNLTGPISSTIGYL-----NLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGL--LPREV- 343 (509)
Q Consensus 272 ~~~~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~--~~~~~- 343 (509)
..+++|++|++++|.+++. |..++.+ ++|++|++++|.+++..+..+..+++|++|++++|++.+. .+..+
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 5555666666666655544 4444443 5666666666666655555666666666666666665443 12222
Q ss_pred -cCCCCCCEEEcCCCcCCC--CCc-cccCCCCCCCEEECcCCcCcccCc-ccccCCccCceeeeecccCCCcCcccccCC
Q 035522 344 -GNLKYLDSRSLDGNNLIG--PIP-PTIGYLTNLTSLNLGYNQLSSSIP-PELMNCSQLQNLVLSHNTLSGIFPSEIGNL 418 (509)
Q Consensus 344 -~~l~~L~~L~L~~n~l~~--~~~-~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 418 (509)
..+++|++|++++|.+.+ .++ ..+..+++|++|++++|.+++..| ..+..+++|++|++++|.++ .+|..+.
T Consensus 197 ~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~-- 273 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP-- 273 (312)
T ss_dssp TTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--
T ss_pred hccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--
Confidence 556666666666666552 111 222345666666666666665442 23444566666666666665 4454444
Q ss_pred CcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcc
Q 035522 419 THLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 419 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus 274 ~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 274 AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence 5666666666666643 44 5566666666666666654
No 64
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=1.6e-25 Score=233.35 Aligned_cols=265 Identities=29% Similarity=0.336 Sum_probs=166.0
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
++++|++++|.++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.+++ +|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTS-LPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSC-CCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCc-CCC---CCCCCCEEECc
Confidence 5899999999998 7777665 79999999999988 5665 56889999999998875 443 67888999998
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcc
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPI 291 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 291 (509)
+|.+++ +|. .+++|+.|++++|.+++ +|.. +++|++|++++|.+++ +|. .+++|+
T Consensus 110 ~N~l~~-l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~------------- 164 (622)
T 3g06_A 110 SNPLTH-LPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELC------------- 164 (622)
T ss_dssp SCCCCC-CCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCC-------------
T ss_pred CCcCCC-CCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCC-------------
Confidence 888874 343 46778888888887763 3432 2555555555555543 221 123444
Q ss_pred hhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCC
Q 035522 292 SSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLT 371 (509)
Q Consensus 292 ~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 371 (509)
.|++++|.+++ +| ..+++|+.|++++|.+++ +|. ..++|+.|++++|.++ .+|. .++
T Consensus 165 -----------~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~ 221 (622)
T 3g06_A 165 -----------KLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPS 221 (622)
T ss_dssp -----------EEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCT
T ss_pred -----------EEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCC
Confidence 44444444442 22 223455555555555543 221 1245555555555554 2332 135
Q ss_pred CCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCc
Q 035522 372 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLS 451 (509)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 451 (509)
+|++|++++|.+++ +| ..+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+..+++|+.|+++
T Consensus 222 ~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~ 292 (622)
T 3g06_A 222 GLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE 292 (622)
T ss_dssp TCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECC
T ss_pred CCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEec
Confidence 56666666666663 33 23456666666666666 3343 4566677777777766 556666667777777777
Q ss_pred CCcCcccCCcccc
Q 035522 452 KNNLSGVVPASVR 464 (509)
Q Consensus 452 ~N~l~~~~~~~~~ 464 (509)
+|++++..|..+.
T Consensus 293 ~N~l~~~~~~~l~ 305 (622)
T 3g06_A 293 GNPLSERTLQALR 305 (622)
T ss_dssp SCCCCHHHHHHHH
T ss_pred CCCCCCcCHHHHH
Confidence 7777666665444
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.94 E-value=2.9e-28 Score=234.93 Aligned_cols=254 Identities=22% Similarity=0.231 Sum_probs=125.3
Q ss_pred ccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCC-CcCCccCC-------CCCCCCEEECcCCCCCCCCccc
Q 035522 127 IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILN-GSIPLEIG-------NLKDLDYLMLQGNKLDGLIPSS 198 (509)
Q Consensus 127 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~-~~~p~~~~-------~l~~L~~L~L~~n~~~~~~~~~ 198 (509)
++..++|++|++++|.+ .+|..+... |++|++++|.+. ..+|..+. ++++|++|++++|.+++.+|..
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 114 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPP 114 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHH
Confidence 44556677777777777 556555433 666677766663 23333332 3444555555444444444443
Q ss_pred ccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCC-----CCcceeecccCcCCCCCchhccC
Q 035522 199 IGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHL-----NPLIEWYLAYNNLVGPLPKEVGN 273 (509)
Q Consensus 199 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~-----~~L~~L~l~~n~~~~~~~~~l~~ 273 (509)
+ .+..+++|++|++++|.+++. |..+..+ ++|++|++++|.+.+..+..+..
T Consensus 115 ~----------------------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~ 171 (312)
T 1wwl_A 115 L----------------------LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRV 171 (312)
T ss_dssp S----------------------SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCC
T ss_pred H----------------------HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhcc
Confidence 3 004445555555555554433 3333333 44444444444444444444555
Q ss_pred CCCcceeecccccccCc--chhhh--cCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCC
Q 035522 274 MKNLKILLLHRNNLTGP--ISSTI--GYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYL 349 (509)
Q Consensus 274 ~~~L~~L~L~~n~~~~~--~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L 349 (509)
+++|++|++++|.+.+. .+..+ ..+++|++|++++|.+++. + ......+..+++|
T Consensus 172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~--------------------~~~~~~~~~l~~L 230 (312)
T 1wwl_A 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP-S--------------------GVCSALAAARVQL 230 (312)
T ss_dssp CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCCCH-H--------------------HHHHHHHHTTCCC
T ss_pred CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCcch-H--------------------HHHHHHHhcCCCC
Confidence 55555555555554332 11122 3444444444444444310 0 0011122344455
Q ss_pred CEEEcCCCcCCCCCc-cccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEeccc
Q 035522 350 DSRSLDGNNLIGPIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSH 428 (509)
Q Consensus 350 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 428 (509)
+.|++++|.+.+..| ..+..+++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|++|++++
T Consensus 231 ~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~ 305 (312)
T 1wwl_A 231 QGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKG 305 (312)
T ss_dssp SEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTT
T ss_pred CEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccC
Confidence 555555555544332 23334556666666666665 4444443 5666666666666644 44 66666666666666
Q ss_pred CcCCc
Q 035522 429 NFING 433 (509)
Q Consensus 429 n~l~~ 433 (509)
|++++
T Consensus 306 N~l~~ 310 (312)
T 1wwl_A 306 NPFLD 310 (312)
T ss_dssp CTTTC
T ss_pred CCCCC
Confidence 66653
No 66
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.94 E-value=1.1e-25 Score=212.25 Aligned_cols=216 Identities=24% Similarity=0.226 Sum_probs=145.4
Q ss_pred CCCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcC
Q 035522 64 SDHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHL 143 (509)
Q Consensus 64 ~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l 143 (509)
.++|.|.|+.|...+..+.++++++.++.. +..+. ++++.|++++|. +.+..+..|.++++|++|++++|.+
T Consensus 2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~~i-----p~~~~--~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l 73 (270)
T 2o6q_A 2 EALCKKDGGVCSCNNNKNSVDCSSKKLTAI-----PSNIP--ADTKKLDLQSNK-LSSLPSKAFHRLTKLRLLYLNDNKL 73 (270)
T ss_dssp CCCBGGGTCSBEEETTTTEEECTTSCCSSC-----CSCCC--TTCSEEECCSSC-CSCCCTTSSSSCTTCCEEECCSSCC
T ss_pred CccCCCCCCCCEeCCCCCEEEccCCCCCcc-----CCCCC--CCCCEEECcCCC-CCeeCHHHhcCCCCCCEEECCCCcc
Confidence 478999999997666677888888887752 32222 567888888887 6655555677788888888888877
Q ss_pred CccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCccc
Q 035522 144 TGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREV 223 (509)
Q Consensus 144 ~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l 223 (509)
....+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+
T Consensus 74 ~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 153 (270)
T 2o6q_A 74 QTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVF 153 (270)
T ss_dssp SCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred CeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHc
Confidence 75555556777778888887777775555566777777777777777776666667777777777777777765555556
Q ss_pred CCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccc
Q 035522 224 GNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNL 287 (509)
Q Consensus 224 ~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~ 287 (509)
..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+
T Consensus 154 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~ 217 (270)
T 2o6q_A 154 DKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW 217 (270)
T ss_dssp TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred cCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence 6777777777777766654444455555555555555555544333444445555555555444
No 67
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=5.3e-28 Score=233.63 Aligned_cols=259 Identities=21% Similarity=0.191 Sum_probs=143.7
Q ss_pred CcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECc
Q 035522 108 LITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQ 187 (509)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 187 (509)
++..+++.+. +.......+..+++|++|++++|.+.+..|..|.++++|++|++++|.+++..+ +..+++|++|+++
T Consensus 12 l~i~~ls~~~-l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 88 (317)
T 3o53_A 12 YKIEKVTDSS-LKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLN 88 (317)
T ss_dssp EEEESCCTTT-HHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECC
T ss_pred eeEeeccccc-hhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECc
Confidence 4445555555 433333444555666666666666665555666666666666666666654333 5566666666666
Q ss_pred CCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCC
Q 035522 188 GNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPL 267 (509)
Q Consensus 188 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 267 (509)
+|.+++.. ..++|++|++++|.+++..+. .+++|++|++++|.+++ ..
T Consensus 89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~------------------------~~ 136 (317)
T 3o53_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITM------------------------LR 136 (317)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCS------------------------GG
T ss_pred CCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCC------------------------cc
Confidence 66554321 225555555555555533222 23445555555554443 33
Q ss_pred chhccCCCCcceeecccccccCcchhhh-cCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCC
Q 035522 268 PKEVGNMKNLKILLLHRNNLTGPISSTI-GYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNL 346 (509)
Q Consensus 268 ~~~l~~~~~L~~L~L~~n~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l 346 (509)
+..+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++. +..+..+
T Consensus 137 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l 213 (317)
T 3o53_A 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSA 213 (317)
T ss_dssp GBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGG
T ss_pred chhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhccc
Confidence 3334444555555555555554433333 2456666666666666533 2 122356666666666666643 3335566
Q ss_pred CCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCc-ccCcccccCCccCceeeeecc
Q 035522 347 KYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLS-SSIPPELMNCSQLQNLVLSHN 405 (509)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~~n 405 (509)
++|+.|++++|.++ .+|..+..+++|+.|++++|.+. +.++..+..+++|+.+++.++
T Consensus 214 ~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 214 AGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp TTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCc
Confidence 66666666666665 34555666666666666666666 445555666666666666633
No 68
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=1.6e-28 Score=237.29 Aligned_cols=266 Identities=20% Similarity=0.184 Sum_probs=144.9
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
+..+++.+.+.......+..+++|++|++++|.+++..|..+.++++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 13 ~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n 90 (317)
T 3o53_A 13 KIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNN 90 (317)
T ss_dssp EEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSS
T ss_pred eEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEECcCC
Confidence 334444444432233333445566666666666665555556666666666666666654332 555556666666555
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCcc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPS 317 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 317 (509)
.+++. ...++|+.|++++|.+++..+. .+++|++|++++|.+++..+.
T Consensus 91 ~l~~l-----------------------------~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~ 138 (317)
T 3o53_A 91 YVQEL-----------------------------LVGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDL 138 (317)
T ss_dssp EEEEE-----------------------------EECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGB
T ss_pred ccccc-----------------------------cCCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccch
Confidence 54311 1124455555555555433221 244566666666666554444
Q ss_pred ccCCCCCcCeeeCccccCCccCcccc-cCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCcc
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREV-GNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQ 396 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~ 396 (509)
.+..+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. + ....+++|++|++++|.+++. +..+..+++
T Consensus 139 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~ 215 (317)
T 3o53_A 139 DEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAG 215 (317)
T ss_dssp CTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEE-CGGGGGGTT
T ss_pred hhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcc-hhhhcccCc
Confidence 55555666666666666655444443 2456666666666665533 2 222356666666666666643 333556666
Q ss_pred CceeeeecccCCCcCcccccCCCcCCeEecccCcCC-cCChhhccCCCCCCEEeCcCC-cCcccCCc
Q 035522 397 LQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN-GTIPSQLGNIPNISAVDLSKN-NLSGVVPA 461 (509)
Q Consensus 397 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~ls~N-~l~~~~~~ 461 (509)
|+.|++++|.+. .+|..+..+++|+.|++++|.+. +.+|..+..+++|+.+++++| .+++..|.
T Consensus 216 L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~ 281 (317)
T 3o53_A 216 VTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE 281 (317)
T ss_dssp CSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred ccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence 666666666665 34555666666666666666665 555566666666666666633 34444443
No 69
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.94 E-value=6.5e-25 Score=228.83 Aligned_cols=263 Identities=27% Similarity=0.339 Sum_probs=179.5
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 185 (509)
.+++.|+++++. ++ .+|..+. ++|++|++++|.++ .+|. .+++|++|++++|.++ .+|. .+++|++|+
T Consensus 40 ~~l~~L~ls~n~-L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~ 107 (622)
T 3g06_A 40 NGNAVLNVGESG-LT-TLPDCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELS 107 (622)
T ss_dssp HCCCEEECCSSC-CS-CCCSCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEE
T ss_pred CCCcEEEecCCC-cC-ccChhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEE
Confidence 358999999999 65 7787665 79999999999998 5665 5799999999999998 5665 679999999
Q ss_pred CcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCC
Q 035522 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVG 265 (509)
Q Consensus 186 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 265 (509)
+++|.+++. |. .+++|++|++++|.++. +|.. +++|++|++++|.+++ +|. ..++|+.|++++|.+++
T Consensus 108 Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~ 175 (622)
T 3g06_A 108 IFSNPLTHL-PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS 175 (622)
T ss_dssp ECSCCCCCC-CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC
T ss_pred CcCCcCCCC-CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC
Confidence 999999865 33 67899999999999985 5543 4899999999999985 443 35679999999999885
Q ss_pred CCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccC
Q 035522 266 PLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGN 345 (509)
Q Consensus 266 ~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~ 345 (509)
+| ..+++|+.|++++|.+++ +|. .+++|+.|++++|.++ .+|. .+++|++|++++|.+++ +| ..
T Consensus 176 -l~---~~~~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~-~l~~---~~~~L~~L~Ls~N~L~~-lp---~~ 239 (622)
T 3g06_A 176 -LP---MLPSGLQELSVSDNQLAS-LPT---LPSELYKLWAYNNRLT-SLPA---LPSGLKELIVSGNRLTS-LP---VL 239 (622)
T ss_dssp -CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS-SCCC---CCTTCCEEECCSSCCSC-CC---CC
T ss_pred -Cc---ccCCCCcEEECCCCCCCC-CCC---ccchhhEEECcCCccc-ccCC---CCCCCCEEEccCCccCc-CC---CC
Confidence 44 345778888888887764 232 2456777777777666 2332 23556666666665553 22 23
Q ss_pred CCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcc
Q 035522 346 LKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPS 413 (509)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 413 (509)
+++|+.|++++|.++ .+|. .+++|+.|++++|.++ .+|..+.++++|+.|++++|.+.+..|.
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~ 302 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ 302 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence 345555555555544 2332 3344455555555444 3344444444444444444444444333
No 70
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=2.2e-26 Score=234.97 Aligned_cols=225 Identities=23% Similarity=0.222 Sum_probs=126.3
Q ss_pred CCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecc
Q 035522 204 KLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLH 283 (509)
Q Consensus 204 ~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~ 283 (509)
+|++|++++|.+++..|..|..+++|++|++++|.+++.. | +..+++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~------------------------~--l~~l~~L~~L~Ls 88 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETL------------------------D--LESLSTLRTLDLN 88 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEE------------------------E--CTTCTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCc------------------------c--cccCCCCCEEEec
Confidence 5555555555555544455555555555555555554322 2 4445555555555
Q ss_pred cccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCC
Q 035522 284 RNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPI 363 (509)
Q Consensus 284 ~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 363 (509)
+|.+++.. ..++|++|++++|.+++..+. .+++|+.|++++|.+++..|..++.+++|+.|++++|.+++..
T Consensus 89 ~N~l~~l~-----~~~~L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 89 NNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSEEEEEE-----ECTTCCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCC-----CCCCcCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcC
Confidence 55554321 125566666666665543332 2355666666666666555555556666666666666666555
Q ss_pred ccccC-CCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCC
Q 035522 364 PPTIG-YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNI 442 (509)
Q Consensus 364 ~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 442 (509)
|..+. .+++|++|++++|.+++.. ....+++|+.|++++|.+++..| .+..+++|+.|++++|.+. .+|..+..+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~-~lp~~l~~l 236 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLV-LIEKALRFS 236 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred hHHHhhhCCcccEEecCCCcccccc--ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCc-ccchhhccC
Confidence 55543 4566666666666666441 12345666666666666664333 3666666666666666666 355556666
Q ss_pred CCCCEEeCcCCcCc-ccCCccccCC
Q 035522 443 PNISAVDLSKNNLS-GVVPASVRRI 466 (509)
Q Consensus 443 ~~L~~L~ls~N~l~-~~~~~~~~~l 466 (509)
++|+.|++++|++. +.+|..+..+
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l 261 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKN 261 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTC
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhC
Confidence 66666666666665 4444444443
No 71
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=7.7e-29 Score=260.86 Aligned_cols=351 Identities=14% Similarity=0.093 Sum_probs=169.8
Q ss_pred CCCCCCcEEecCCCCCcceeCchhcc-CCCCCCEEEccCC-cCCcc-CCccccCCCCCcEEeccCCcCCCcCCcc----C
Q 035522 103 TCFPNLITFKISGTGFLSGRIPSEIG-ALSKLQVLNLSQN-HLTGT-IPSEIGSSRNLFQLDLSINILNGSIPLE----I 175 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~~~~~-~l~~L~~L~L~~~-~l~~~-~~~~l~~l~~L~~L~L~~n~~~~~~p~~----~ 175 (509)
..+++|++|+++++. +++..+..+. .+++|++|++++| .+.+. ++..+.++++|++|++++|.+++..+.. .
T Consensus 102 ~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~ 180 (594)
T 2p1m_B 102 SSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP 180 (594)
T ss_dssp HHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred HhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence 356778888888777 6655555554 5778888888777 34322 3333446778888888877765433322 2
Q ss_pred CCCCCCCEEECcCCC--CCCC-CcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCC-------C-----
Q 035522 176 GNLKDLDYLMLQGNK--LDGL-IPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNL-------T----- 240 (509)
Q Consensus 176 ~~l~~L~~L~L~~n~--~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l-------~----- 240 (509)
..+++|++|++++|. +... ++..+.++++|++|++++|.....++..+..+++|++|+++.+.. .
T Consensus 181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~ 260 (594)
T 2p1m_B 181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVA 260 (594)
T ss_dssp TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHH
T ss_pred hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHH
Confidence 356678888887775 2111 111224467788888877732223555556667777776554421 0
Q ss_pred ------------------CCCchhhhCCCCcceeecccCcCCCCC-chhccCCCCcceeecccccccC-cchhhhcCCCC
Q 035522 241 ------------------GPIPSTLYHLNPLIEWYLAYNNLVGPL-PKEVGNMKNLKILLLHRNNLTG-PISSTIGYLNL 300 (509)
Q Consensus 241 ------------------~~~~~~l~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~L~~n~~~~-~~~~~~~~~~~ 300 (509)
+.++..+..+++|++|++++|.+++.. ...+..+++|+.|++.+| ++. .++.....+++
T Consensus 261 l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~ 339 (594)
T 2p1m_B 261 LSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKD 339 (594)
T ss_dssp HHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTT
T ss_pred HhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCC
Confidence 112222223445555555555533211 112334555555555554 221 11222223455
Q ss_pred CCEEECcC---------CCCCCCCcccc-CCCCCcCeeeCccccCCccCccccc-CCCCCCEEEcC--C----CcCCCC-
Q 035522 301 LEILDLSH---------NRLDGPIPSTI-GNLTNLTSLVLSSNQLSGLLPREVG-NLKYLDSRSLD--G----NNLIGP- 362 (509)
Q Consensus 301 L~~L~l~~---------n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~L~--~----n~l~~~- 362 (509)
|++|++.+ +.+++.....+ ..+++|++|.++.+.+++.....+. .+++|+.|+++ + +.+++.
T Consensus 340 L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCC
T ss_pred CCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCc
Confidence 55555522 22221111111 1245555555555554433332232 34555555555 2 222210
Q ss_pred ----CccccCCCCCCCEEECcCCcCcccCcccccC-CccCceeeeecccCCCcCcccc-cCCCcCCeEecccCcCCcCCh
Q 035522 363 ----IPPTIGYLTNLTSLNLGYNQLSSSIPPELMN-CSQLQNLVLSHNTLSGIFPSEI-GNLTHLRQLDLSHNFINGTIP 436 (509)
Q Consensus 363 ----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p 436 (509)
++..+..+++|++|++++ .+++.....+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|.+++...
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~ 498 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKAL 498 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHH
Confidence 011133445555555544 333322222222 4555555555555543322222 345555555555555543322
Q ss_pred h-hccCCCCCCEEeCcCCcCc
Q 035522 437 S-QLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 437 ~-~~~~l~~L~~L~ls~N~l~ 456 (509)
. .+..+++|++|++++|+++
T Consensus 499 ~~~~~~l~~L~~L~l~~~~~~ 519 (594)
T 2p1m_B 499 LANASKLETMRSLWMSSCSVS 519 (594)
T ss_dssp HHTGGGGGGSSEEEEESSCCB
T ss_pred HHHHHhCCCCCEEeeeCCCCC
Confidence 2 2233555555555555553
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=6e-25 Score=207.94 Aligned_cols=203 Identities=24% Similarity=0.255 Sum_probs=97.6
Q ss_pred CcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcC
Q 035522 276 NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLD 355 (509)
Q Consensus 276 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 355 (509)
++++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555555555554433344455555555555555544333444445555555555555544444444444555555555
Q ss_pred CCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCc-CcccccCCCcCCeEecccCcCCcC
Q 035522 356 GNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGI-FPSEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 356 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
+|.+.+..+.. +..+++|++|++++|.+.+. +|..+..+++|++|++++|++++.
T Consensus 109 ~n~l~~~~~~~------------------------~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~ 164 (276)
T 2z62_A 109 ETNLASLENFP------------------------IGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSI 164 (276)
T ss_dssp TSCCCCSTTCC------------------------CTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEE
T ss_pred CCCccccCchh------------------------cccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcC
Confidence 54444433333 44444455555555544432 344445555555555555555444
Q ss_pred ChhhccCCCCCC----EEeCcCCcCcccCCcccc--CCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCcc
Q 035522 435 IPSQLGNIPNIS----AVDLSKNNLSGVVPASVR--RIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 435 ~p~~~~~l~~L~----~L~ls~N~l~~~~~~~~~--~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~ 505 (509)
.+..+..+++|+ .|++++|++++..+..+. ++++|++++|++++ +|. ..+++++.+++.+||+.|+|+
T Consensus 165 ~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~N~~~c~c~ 241 (276)
T 2z62_A 165 YCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKELALDTNQLKS---VPDGIFDRLTSLQKIWLHTNPWDCSCP 241 (276)
T ss_dssp CGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCSCCEEEEECCSSCCSC---CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred CHHHhhhhhhccccceeeecCCCcccccCccccCCCcccEEECCCCceee---cCHhHhcccccccEEEccCCcccccCC
Confidence 344443333333 455555555544433332 23355555555554 333 334455555555555555553
No 73
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.93 E-value=4.8e-26 Score=232.56 Aligned_cols=234 Identities=22% Similarity=0.218 Sum_probs=132.5
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
+|++|++++|.+.+..|..|+.+++|++|+|++|.+++..| +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 66666666666666555666666666666666666654433 556666666666666555332 12555555555
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcc
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPI 291 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~ 291 (509)
+|.+++..+. .+++|++|++++|.+++. .|..+..+++|+.|++++|.+++..
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~------------------------~~~~~~~l~~L~~L~Ls~N~l~~~~ 160 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITML------------------------RDLDEGCRSRVQYLDLKLNEIDTVN 160 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSG------------------------GGBCGGGGSSEEEEECTTSCCCEEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCC------------------------CchhhcCCCCCCEEECCCCCCCCcC
Confidence 5555543322 234455555555554443 3334444455555555555555444
Q ss_pred hhhhc-CCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCC
Q 035522 292 SSTIG-YLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYL 370 (509)
Q Consensus 292 ~~~~~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 370 (509)
|..+. .+++|+.|++++|.+++. + ....+++|++|++++|.+++..+ .+..+++|+.|++++|.+++ +|..+..+
T Consensus 161 ~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l 236 (487)
T 3oja_A 161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFS 236 (487)
T ss_dssp GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCC
T ss_pred hHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccC
Confidence 44443 455666666666665533 2 12245666666666666664333 35566666666666666663 45556666
Q ss_pred CCCCEEECcCCcCc-ccCcccccCCccCceeeee
Q 035522 371 TNLTSLNLGYNQLS-SSIPPELMNCSQLQNLVLS 403 (509)
Q Consensus 371 ~~L~~L~L~~n~l~-~~~~~~~~~~~~L~~L~L~ 403 (509)
++|+.|++++|.+. +.+|..+..++.|+.+++.
T Consensus 237 ~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 66777777776666 4455555666666666654
No 74
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.93 E-value=5.8e-29 Score=261.82 Aligned_cols=394 Identities=16% Similarity=0.108 Sum_probs=231.3
Q ss_pred ccCCCCCCcEEecCCCCCcce--eC------------chhccCCCCCCEEEccCCcCCccCCcccc-CCCCCcEEeccCC
Q 035522 101 NFTCFPNLITFKISGTGFLSG--RI------------PSEIGALSKLQVLNLSQNHLTGTIPSEIG-SSRNLFQLDLSIN 165 (509)
Q Consensus 101 ~l~~l~~L~~L~l~~~~~~~~--~~------------~~~~~~l~~L~~L~L~~~~l~~~~~~~l~-~l~~L~~L~L~~n 165 (509)
.+..+++|+.|+++++..+.. .. +.....+++|++|++++|.+.+..+..+. .+++|++|++++|
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~ 140 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC 140 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence 456788999999998762211 11 12235688999999999998877777775 6899999999999
Q ss_pred -cCCCc-CCccCCCCCCCCEEECcCCCCCCCCcccc----cCCCCCCEEeccCCc--Cccc-CCcccCCCCCCcEEECcC
Q 035522 166 -ILNGS-IPLEIGNLKDLDYLMLQGNKLDGLIPSSI----GNLTKLTGLNLSLNK--LSGR-LPREVGNLKILELLYLDS 236 (509)
Q Consensus 166 -~~~~~-~p~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l~~L~~L~l~~n~--l~~~-~~~~l~~l~~L~~L~l~~ 236 (509)
.+... ++..+.++++|++|++++|.+++..+..+ ..+++|++|++++|. +... ++..+..+++|++|++++
T Consensus 141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~ 220 (594)
T 2p1m_B 141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR 220 (594)
T ss_dssp EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence 44432 34444578999999999998776544433 367899999999986 2211 122234579999999999
Q ss_pred CCCCCCCchhhhCCCCcceeecccCcC-------CCCCchhccCCCCccee-ecccccccCcchhhhcCCCCCCEEECcC
Q 035522 237 NNLTGPIPSTLYHLNPLIEWYLAYNNL-------VGPLPKEVGNMKNLKIL-LLHRNNLTGPISSTIGYLNLLEILDLSH 308 (509)
Q Consensus 237 n~l~~~~~~~l~~~~~L~~L~l~~n~~-------~~~~~~~l~~~~~L~~L-~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 308 (509)
|...+.++..+..+++|++|++..+.. .+ ++..+.++++|+.+ .+.+... +.++..+..+++|++|++++
T Consensus 221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~ 298 (594)
T 2p1m_B 221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY 298 (594)
T ss_dssp TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence 843334777788899999998765432 11 22345666677766 3333221 23344444566777777777
Q ss_pred CCCCCCC-ccccCCCCCcCeeeCccccCCcc-CcccccCCCCCCEEEcCC---------CcCCCCCcccc-CCCCCCCEE
Q 035522 309 NRLDGPI-PSTIGNLTNLTSLVLSSNQLSGL-LPREVGNLKYLDSRSLDG---------NNLIGPIPPTI-GYLTNLTSL 376 (509)
Q Consensus 309 n~l~~~~-~~~~~~l~~L~~L~ls~n~l~~~-~~~~~~~l~~L~~L~L~~---------n~l~~~~~~~~-~~l~~L~~L 376 (509)
|.+++.. ...+..+++|++|++++| +... ++.....+++|+.|++.+ +.+++.....+ ..+++|++|
T Consensus 299 ~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L 377 (594)
T 2p1m_B 299 ATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV 377 (594)
T ss_dssp CCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEE
T ss_pred CCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHH
Confidence 7654321 222446677777777766 3211 122223466677776632 22222111111 235666666
Q ss_pred ECcCCcCcccCccccc-CCccCceeeee--c----ccCCCc-----CcccccCCCcCCeEecccCcCCcCChhhccC-CC
Q 035522 377 NLGYNQLSSSIPPELM-NCSQLQNLVLS--H----NTLSGI-----FPSEIGNLTHLRQLDLSHNFINGTIPSQLGN-IP 443 (509)
Q Consensus 377 ~L~~n~l~~~~~~~~~-~~~~L~~L~L~--~----n~l~~~-----~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~-l~ 443 (509)
.+..|.+++.....+. .+++|+.|+++ + +.+++. ++..+..+++|++|++++ .+++..+..+.. ++
T Consensus 378 ~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~ 456 (594)
T 2p1m_B 378 LYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAK 456 (594)
T ss_dssp EEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCT
T ss_pred HHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhch
Confidence 6666666543333332 35666666666 2 333311 111244556666666655 444443333433 56
Q ss_pred CCCEEeCcCCcCcccCC----ccccCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcC
Q 035522 444 NISAVDLSKNNLSGVVP----ASVRRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKG 500 (509)
Q Consensus 444 ~L~~L~ls~N~l~~~~~----~~~~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~ 500 (509)
+|++|++++|.+++..+ ..+++|++|++++|.+++ ..+. ..+++|+.+.+.+|+.
T Consensus 457 ~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~--~~~~~~~~~l~~L~~L~l~~~~~ 518 (594)
T 2p1m_B 457 KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGD--KALLANASKLETMRSLWMSSCSV 518 (594)
T ss_dssp TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCH--HHHHHTGGGGGGSSEEEEESSCC
T ss_pred hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcH--HHHHHHHHhCCCCCEEeeeCCCC
Confidence 66666666666654433 224556666666666543 1111 3345566666666543
No 75
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.92 E-value=2.4e-24 Score=204.86 Aligned_cols=205 Identities=22% Similarity=0.216 Sum_probs=139.7
Q ss_pred hcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCC
Q 035522 295 IGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLT 374 (509)
Q Consensus 295 ~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 374 (509)
++.++++++++++++.++ .+|..+ .++++.|++++|.+++..+..+..+++|+.|++++|.+++. +.. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~-~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD-GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC-SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC-CCCCcCC
Confidence 344556666666666665 344333 25666677777766666566666677777777777766643 222 5667777
Q ss_pred EEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCc
Q 035522 375 SLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNN 454 (509)
Q Consensus 375 ~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~ 454 (509)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777776 556666677777777777777776666667777777777777777776666666777778888888887
Q ss_pred CcccCCcc---ccCCCeEecccCccccCCCCCC--CCCCCCCccCcCCCcCCCCccccC
Q 035522 455 LSGVVPAS---VRRIPKLIVSENNLELENSTSS--ENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 455 l~~~~~~~---~~~l~~L~ls~N~l~~~~~ip~--~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
+++..+.. +.+|++|++++|+++. +|. ...+.++.+.+.|||+.|.|.+.+
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~~---ip~~~~~~~~L~~l~L~~Np~~C~c~~~~ 215 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLYT---IPKGFFGSHLLPFAFLHGNPWLCNCEILY 215 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCCC---CCTTTTTTCCCSEEECCSCCBCCSGGGHH
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCCc---cChhhcccccCCeEEeCCCCccCcCccHH
Confidence 77555433 3456678888888776 776 344568888899999999887644
No 76
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.92 E-value=4.9e-24 Score=201.64 Aligned_cols=133 Identities=25% Similarity=0.213 Sum_probs=70.0
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
+|++|++++|.+.+..+..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 46666666666655444455556666666666665554444455555555666655555555544555555555555555
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCCCCC-CchhhhCCCCcceeecccCcCC
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNLTGP-IPSTLYHLNPLIEWYLAYNNLV 264 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~-~~~~l~~~~~L~~L~l~~n~~~ 264 (509)
+|.+.+..+..+..+++|++|++++|.+++. +|..+..+++|++|++++|.++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~ 162 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCC
Confidence 5555544443455555555555555554431 2333444444444444444333
No 77
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.91 E-value=7.3e-23 Score=192.86 Aligned_cols=108 Identities=29% Similarity=0.288 Sum_probs=42.7
Q ss_pred CCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEecc
Q 035522 132 KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLS 211 (509)
Q Consensus 132 ~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 211 (509)
++++|++++|.+.+..+..|.++++|++|++++|.++...+..|.++++|++|++++|.+.+..+..+.++++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 34444444444443333334444444444444444442222223334444444444444433333333334444444444
Q ss_pred CCcCcccCCcccCCCCCCcEEECcCCCC
Q 035522 212 LNKLSGRLPREVGNLKILELLYLDSNNL 239 (509)
Q Consensus 212 ~n~l~~~~~~~l~~l~~L~~L~l~~n~l 239 (509)
+|.+++..+..+..+++|++|++++|.+
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 145 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNEL 145 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcC
Confidence 4443333333333333333333333333
No 78
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.7e-24 Score=201.21 Aligned_cols=202 Identities=27% Similarity=0.283 Sum_probs=125.1
Q ss_pred CCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEE
Q 035522 273 NMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSR 352 (509)
Q Consensus 273 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 352 (509)
.+++|+.|++.+|.++.. ..+..+++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 114 (272)
T 3rfs_A 39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKEL 114 (272)
T ss_dssp HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEE
Confidence 345566666666655422 2355566666666666666542 245566666666666666665555555666666666
Q ss_pred EcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 353 SLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 353 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|.+.
T Consensus 115 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~ 194 (272)
T 3rfs_A 115 VLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLK 194 (272)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS
T ss_pred ECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCC
Confidence 66666666555555566666666666666666555555566666666666666666555555666667777777777666
Q ss_pred cCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCC
Q 035522 433 GTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 433 ~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~ 484 (509)
+..+..+..+++|++|++++|++.+..| ++++++++.|.++| .+|.
T Consensus 195 ~~~~~~~~~l~~L~~L~l~~N~~~~~~~----~l~~l~~~~n~~~g--~ip~ 240 (272)
T 3rfs_A 195 SVPDGVFDRLTSLQYIWLHDNPWDCTCP----GIRYLSEWINKHSG--VVRN 240 (272)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCBCCCTT----TTHHHHHHHHHTGG--GBBC
T ss_pred ccCHHHHhCCcCCCEEEccCCCccccCc----HHHHHHHHHHhCCC--cccC
Confidence 6555556666677777777776665433 45566666677766 6664
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=4.8e-23 Score=194.30 Aligned_cols=203 Identities=26% Similarity=0.254 Sum_probs=107.3
Q ss_pred CCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCC
Q 035522 78 GSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNL 157 (509)
Q Consensus 78 ~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L 157 (509)
..++.++++++.+.. ...+..+++|++|++++|. +.+ ...+..+++|++|++++|.+.+..+..|.++++|
T Consensus 41 ~~L~~L~l~~~~i~~------~~~l~~l~~L~~L~l~~n~-l~~--~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 111 (272)
T 3rfs_A 41 NSIDQIIANNSDIKS------VQGIQYLPNVRYLALGGNK-LHD--ISALKELTNLTYLILTGNQLQSLPNGVFDKLTNL 111 (272)
T ss_dssp TTCCEEECTTSCCCC------CTTGGGCTTCCEEECTTSC-CCC--CGGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred cceeeeeeCCCCccc------ccccccCCCCcEEECCCCC-CCC--chhhcCCCCCCEEECCCCccCccChhHhcCCcCC
Confidence 345555555555443 2335555556666665555 333 1245555556666665555554444445555555
Q ss_pred cEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCC
Q 035522 158 FQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSN 237 (509)
Q Consensus 158 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 237 (509)
++|++++|.+++..+..+.++++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|
T Consensus 112 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N 191 (272)
T 3rfs_A 112 KELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN 191 (272)
T ss_dssp CEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC
Confidence 55555555555444444555555555555555555544444555555555555555555444444555555555555555
Q ss_pred CCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhc
Q 035522 238 NLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIG 296 (509)
Q Consensus 238 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~ 296 (509)
.+++..+..+..+++|++|++++|.+.+. +++|+.+++..|.++|.+|..++
T Consensus 192 ~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~ 243 (272)
T 3rfs_A 192 QLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAG 243 (272)
T ss_dssp CCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTS
T ss_pred cCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCccc
Confidence 55544444445555555555555544422 23445555555555544444443
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2e-22 Score=191.64 Aligned_cols=132 Identities=26% Similarity=0.295 Sum_probs=57.7
Q ss_pred cCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCC
Q 035522 102 FTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDL 181 (509)
Q Consensus 102 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 181 (509)
+..+++++.++++++. ++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+++. +. ...+++|
T Consensus 6 ~~~l~~l~~l~~~~~~-l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~-~~~l~~L 79 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRN-LT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QV-DGTLPVL 79 (290)
T ss_dssp EECSTTCCEEECTTSC-CS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-EC-CSCCTTC
T ss_pred ccccCCccEEECCCCC-CC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cC-CCCCCcC
Confidence 3444455555555444 22 2333222 3445555555555444444444455555555555544422 11 1344444
Q ss_pred CEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCC
Q 035522 182 DYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 182 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 240 (509)
++|++++|.++ .+|..+..+++|++|++++|++++..+..|.++++|++|++++|.++
T Consensus 80 ~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~ 137 (290)
T 1p9a_G 80 GTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELK 137 (290)
T ss_dssp CEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred CEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence 44444444444 23333444444444444444444333333444444444444444444
No 81
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=2.7e-24 Score=209.54 Aligned_cols=249 Identities=21% Similarity=0.259 Sum_probs=182.5
Q ss_pred CcEEECcCCCCCCCCchhhhCC--CCcceeecccCcCCCCCchhccCCCCcceeecccccccCc-chhhhcCCCCCCEEE
Q 035522 229 LELLYLDSNNLTGPIPSTLYHL--NPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGP-ISSTIGYLNLLEILD 305 (509)
Q Consensus 229 L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~-~~~~~~~~~~L~~L~ 305 (509)
++.++++++.+. +..+..+ ++++.+++++|.+.+..+. +..+++|++|++++|.+++. ++..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 566666666554 3445555 6677777777777665554 44678888888888887755 667778888888888
Q ss_pred CcCCCCCCCCccccCCCCCcCeeeCccc-cCCcc-CcccccCCCCCCEEEcCCC-cCCCC-CccccCCCC-CCCEEECcC
Q 035522 306 LSHNRLDGPIPSTIGNLTNLTSLVLSSN-QLSGL-LPREVGNLKYLDSRSLDGN-NLIGP-IPPTIGYLT-NLTSLNLGY 380 (509)
Q Consensus 306 l~~n~l~~~~~~~~~~l~~L~~L~ls~n-~l~~~-~~~~~~~l~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~L~~ 380 (509)
+++|.+++..+..+..+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 8888887767777778888888888888 56642 5556777888888888888 77653 456667788 889999988
Q ss_pred C--cCc-ccCcccccCCccCceeeeeccc-CCCcCcccccCCCcCCeEecccCc-CCcCChhhccCCCCCCEEeCcCCcC
Q 035522 381 N--QLS-SSIPPELMNCSQLQNLVLSHNT-LSGIFPSEIGNLTHLRQLDLSHNF-INGTIPSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 381 n--~l~-~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~ls~N~l 455 (509)
| .++ +.++..+..+++|+.|++++|. +++..+..+..+++|++|++++|. +.......+..+++|++|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 8 455 3456666778889999999988 666667778888999999999985 33232335778899999999988 5
Q ss_pred cccCCccc-cCCCeEecccCccccCCCCCC
Q 035522 456 SGVVPASV-RRIPKLIVSENNLELENSTSS 484 (509)
Q Consensus 456 ~~~~~~~~-~~l~~L~ls~N~l~~~~~ip~ 484 (509)
+......+ ..++.|++++|++++ ..|.
T Consensus 284 ~~~~~~~l~~~l~~L~l~~n~l~~--~~~~ 311 (336)
T 2ast_B 284 PDGTLQLLKEALPHLQINCSHFTT--IARP 311 (336)
T ss_dssp CTTCHHHHHHHSTTSEESCCCSCC--TTCS
T ss_pred CHHHHHHHHhhCcceEEecccCcc--ccCC
Confidence 54433344 347788899999988 6665
No 82
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=4.3e-24 Score=210.20 Aligned_cols=255 Identities=20% Similarity=0.172 Sum_probs=123.5
Q ss_pred EeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCc----ccccCCC-CCCEEeccCCcCcccCCcccCCC-----CCC
Q 035522 160 LDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIP----SSIGNLT-KLTGLNLSLNKLSGRLPREVGNL-----KIL 229 (509)
Q Consensus 160 L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~----~~l~~l~-~L~~L~l~~n~l~~~~~~~l~~l-----~~L 229 (509)
++++.|.+++.+|..+...++|++|++++|.+++..+ ..+.+++ +|++|++++|.+++..+..+..+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 4556666665555555444556666666666655544 4455555 56666666666554444444332 555
Q ss_pred cEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCC-CCcceeecccccccCcchhhh----cC-CCCCCE
Q 035522 230 ELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNM-KNLKILLLHRNNLTGPISSTI----GY-LNLLEI 303 (509)
Q Consensus 230 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~~~~~~----~~-~~~L~~ 303 (509)
++|++++|.+++..+..+... +..+ ++|++|++++|.+++..+..+ .. .++|++
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~--------------------l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKT--------------------LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHH--------------------HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred cEEECcCCcCChHHHHHHHHH--------------------HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 555555555554333322221 1222 344444444444443322221 22 234555
Q ss_pred EECcCCCCCCCCc----cccCCCC-CcCeeeCccccCCccCccc----ccCC-CCCCEEEcCCCcCCCC----CccccCC
Q 035522 304 LDLSHNRLDGPIP----STIGNLT-NLTSLVLSSNQLSGLLPRE----VGNL-KYLDSRSLDGNNLIGP----IPPTIGY 369 (509)
Q Consensus 304 L~l~~n~l~~~~~----~~~~~l~-~L~~L~ls~n~l~~~~~~~----~~~l-~~L~~L~L~~n~l~~~----~~~~~~~ 369 (509)
|++++|.+++..+ ..+..++ +|++|++++|.+++..+.. +..+ ++|+.|++++|.+.+. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 5555555443222 1222232 5555555555554433322 2223 3555555555555432 2222322
Q ss_pred -CCCCCEEECcCCcCcccCc----ccccCCccCceeeeecccCCCc-------CcccccCCCcCCeEecccCcCCcC
Q 035522 370 -LTNLTSLNLGYNQLSSSIP----PELMNCSQLQNLVLSHNTLSGI-------FPSEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 370 -l~~L~~L~L~~n~l~~~~~----~~~~~~~~L~~L~L~~n~l~~~-------~~~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
.++|++|++++|.+++..+ ..+..+++|+.|++++|.+.+. ++..+..+++|++|++++|.+.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 2356666666666654322 2234455666666666663322 222455566666666666666544
No 83
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=3.9e-24 Score=210.47 Aligned_cols=255 Identities=22% Similarity=0.201 Sum_probs=172.0
Q ss_pred EECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCC-CcceeecccCc
Q 035522 184 LMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLN-PLIEWYLAYNN 262 (509)
Q Consensus 184 L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~n~ 262 (509)
.+++.|.+++.+|..+...++|++|++++|.+++..+..+ ...+..++ +|++|++++|.
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l--------------------~~~l~~~~~~L~~L~Ls~N~ 62 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVEL--------------------IQAFANTPASVTSLNLSGNS 62 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHH--------------------HHHHHTCCTTCCEEECCSSC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHH--------------------HHHHHhCCCceeEEECcCCC
Confidence 3455555555555444444445555555555543333000 03334444 44455555554
Q ss_pred CCCCCchhccCC-----CCcceeecccccccCcchhh----hcCC-CCCCEEECcCCCCCCCCcccc----CC-CCCcCe
Q 035522 263 LVGPLPKEVGNM-----KNLKILLLHRNNLTGPISST----IGYL-NLLEILDLSHNRLDGPIPSTI----GN-LTNLTS 327 (509)
Q Consensus 263 ~~~~~~~~l~~~-----~~L~~L~L~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~l~~~~~~~~----~~-l~~L~~ 327 (509)
+++..+..+..+ ++|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+..+ .. .++|++
T Consensus 63 l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~ 142 (362)
T 3goz_A 63 LGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITS 142 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCE
T ss_pred CCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeE
Confidence 444434333332 77888888888877655543 3444 899999999999987665443 33 469999
Q ss_pred eeCccccCCccC----cccccCCC-CCCEEEcCCCcCCCCCcccc----CCC-CCCCEEECcCCcCccc----CcccccC
Q 035522 328 LVLSSNQLSGLL----PREVGNLK-YLDSRSLDGNNLIGPIPPTI----GYL-TNLTSLNLGYNQLSSS----IPPELMN 393 (509)
Q Consensus 328 L~ls~n~l~~~~----~~~~~~l~-~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~ 393 (509)
|++++|.+++.. +..+...+ +|++|++++|.+++..+..+ ..+ ++|++|++++|.+++. ++..+..
T Consensus 143 L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~ 222 (362)
T 3goz_A 143 LNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSS 222 (362)
T ss_dssp EECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHH
T ss_pred EEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhc
Confidence 999999998543 33445555 99999999999987665433 445 5999999999999863 3444444
Q ss_pred -CccCceeeeecccCCCcCc----ccccCCCcCCeEecccCcCCcCC-------hhhccCCCCCCEEeCcCCcCccc
Q 035522 394 -CSQLQNLVLSHNTLSGIFP----SEIGNLTHLRQLDLSHNFINGTI-------PSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 394 -~~~L~~L~L~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~-------p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
.++|++|++++|.+++..+ ..+..+++|++|++++|.+.+.. +..+..+++|+.||+++|++.+.
T Consensus 223 ~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 223 IPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp SCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred CCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 4689999999999986544 34577899999999999955433 34567788999999999999876
No 84
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=4.6e-24 Score=207.91 Aligned_cols=198 Identities=23% Similarity=0.237 Sum_probs=103.7
Q ss_pred CcEEecCCCCCcceeCchhccCC--CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCc-CCccCCCCCCCCEE
Q 035522 108 LITFKISGTGFLSGRIPSEIGAL--SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGS-IPLEIGNLKDLDYL 184 (509)
Q Consensus 108 L~~L~l~~~~~~~~~~~~~~~~l--~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~-~p~~~~~l~~L~~L 184 (509)
++.++++++. +. +..+..+ +++++|++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 49 ~~~l~l~~~~-~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 49 WQTLDLTGKN-LH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp SSEEECTTCB-CC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred heeecccccc-CC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5677777776 33 3445555 6777777777777655444 44566677777766666543 55555566666666
Q ss_pred ECcCCCCCCCCcccccCCCCCCEEeccCC-cCccc-CCcccCCCCCCcEEECcCC-CCCCCCchhhhCCCCcceeecccC
Q 035522 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLN-KLSGR-LPREVGNLKILELLYLDSN-NLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 185 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
++++|.+++..+..+..+++|++|++++| .+++. ++..+.++++|++|++++| .+++.
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~------------------- 184 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK------------------- 184 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHH-------------------
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChH-------------------
Confidence 66666655555555555666666666655 34431 3333444555555555555 44321
Q ss_pred cCCCCCchhccCCC-Ccceeecccc--ccc-CcchhhhcCCCCCCEEECcCCC-CCCCCccccCCCCCcCeeeCccc
Q 035522 262 NLVGPLPKEVGNMK-NLKILLLHRN--NLT-GPISSTIGYLNLLEILDLSHNR-LDGPIPSTIGNLTNLTSLVLSSN 333 (509)
Q Consensus 262 ~~~~~~~~~l~~~~-~L~~L~L~~n--~~~-~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~n 333 (509)
.++..+..++ +|++|++++| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|
T Consensus 185 ----~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~ 257 (336)
T 2ast_B 185 ----HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC 257 (336)
T ss_dssp ----HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred ----HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence 0122233344 4444444444 222 2233344445555555555554 33333344444445555555444
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.89 E-value=7e-25 Score=217.90 Aligned_cols=249 Identities=20% Similarity=0.236 Sum_probs=149.7
Q ss_pred CcccccCCCCCCEEeccCCcCcccC----CcccCCCCCCcEEECcCCCC---CCCCchhhhCCCCcceeecccCcCCCCC
Q 035522 195 IPSSIGNLTKLTGLNLSLNKLSGRL----PREVGNLKILELLYLDSNNL---TGPIPSTLYHLNPLIEWYLAYNNLVGPL 267 (509)
Q Consensus 195 ~~~~l~~l~~L~~L~l~~n~l~~~~----~~~l~~l~~L~~L~l~~n~l---~~~~~~~l~~~~~L~~L~l~~n~~~~~~ 267 (509)
++..+..+++|++|++++|.+.... +..+..+++|++|++++|.+ ++.+|..+.. +
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~-----------------l 86 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL-----------------L 86 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHH-----------------H
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHH-----------------H
Confidence 4455677788888888888877543 33466778888888887643 3334443311 0
Q ss_pred chhccCCCCcceeecccccccC----cchhhhcCCCCCCEEECcCCCCCCCCccc----cCCC---------CCcCeeeC
Q 035522 268 PKEVGNMKNLKILLLHRNNLTG----PISSTIGYLNLLEILDLSHNRLDGPIPST----IGNL---------TNLTSLVL 330 (509)
Q Consensus 268 ~~~l~~~~~L~~L~L~~n~~~~----~~~~~~~~~~~L~~L~l~~n~l~~~~~~~----~~~l---------~~L~~L~l 330 (509)
...+..+++|++|++++|.+++ .++..+..+++|++|++++|.+++..+.. +..+ ++|++|++
T Consensus 87 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 87 LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 0123445555555555555544 24444555555666666665554322222 2222 56666666
Q ss_pred ccccCC-ccCc---ccccCCCCCCEEEcCCCcCCC-----CCccccCCCCCCCEEECcCCcCc----ccCcccccCCccC
Q 035522 331 SSNQLS-GLLP---REVGNLKYLDSRSLDGNNLIG-----PIPPTIGYLTNLTSLNLGYNQLS----SSIPPELMNCSQL 397 (509)
Q Consensus 331 s~n~l~-~~~~---~~~~~l~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~L~~n~l~----~~~~~~~~~~~~L 397 (509)
++|+++ +..+ ..+..+++|+.|++++|.+.. ..+..+..+++|++|++++|.++ +.++..+..+++|
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L 246 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL 246 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence 666665 2222 244556667777777776652 22335566777777777777775 3456666677777
Q ss_pred ceeeeecccCCCc----Cccccc--CCCcCCeEecccCcCCc----CChhhc-cCCCCCCEEeCcCCcCcccCC
Q 035522 398 QNLVLSHNTLSGI----FPSEIG--NLTHLRQLDLSHNFING----TIPSQL-GNIPNISAVDLSKNNLSGVVP 460 (509)
Q Consensus 398 ~~L~L~~n~l~~~----~~~~~~--~l~~L~~L~L~~n~l~~----~~p~~~-~~l~~L~~L~ls~N~l~~~~~ 460 (509)
++|++++|.+++. ++..+. .+++|++|+|++|.+++ .+|..+ .++++|++|++++|++++..+
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 7777777777654 344553 37778888888888776 366666 557788888888888776653
No 86
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=4.2e-22 Score=185.51 Aligned_cols=192 Identities=25% Similarity=0.237 Sum_probs=142.7
Q ss_pred CCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCC
Q 035522 65 DHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLT 144 (509)
Q Consensus 65 ~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~ 144 (509)
+||.|.|.+|.. ..++++++++.+... +..+. ++++.|++++|. +.+..+..|.++++|++|++++|.+.
T Consensus 3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~~~-----p~~~~--~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~ 72 (251)
T 3m19_A 3 TCETVTGCTCNE--GKKEVDCQGKSLDSV-----PSGIP--ADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQ 72 (251)
T ss_dssp -CHHHHSSEEEG--GGTEEECTTCCCSSC-----CSCCC--TTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCC
T ss_pred cCCCCCceEcCC--CCeEEecCCCCcccc-----CCCCC--CCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCC
Confidence 577899999952 334678888877643 22332 578888888888 77766777888888888888888888
Q ss_pred ccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccC
Q 035522 145 GTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVG 224 (509)
Q Consensus 145 ~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~ 224 (509)
+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+.
T Consensus 73 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 152 (251)
T 3m19_A 73 TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFD 152 (251)
T ss_dssp CCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTT
T ss_pred ccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcC
Confidence 77777788888888888888888866666677888888888888888766666677788888888888888766666677
Q ss_pred CCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCC
Q 035522 225 NLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGP 266 (509)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~ 266 (509)
.+++|++|++++|.+++..+..+..+++|++|++++|.+...
T Consensus 153 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 153 KLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred cCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence 778888888888877766555666677777777777766543
No 87
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=2.1e-22 Score=186.16 Aligned_cols=197 Identities=16% Similarity=0.184 Sum_probs=126.0
Q ss_pred CCcceeecccccccCcchhhhcCCCCCCEEECcCCC-CCCCCccccCCCCCcCeeeCcc-ccCCccCcccccCCCCCCEE
Q 035522 275 KNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNR-LDGPIPSTIGNLTNLTSLVLSS-NQLSGLLPREVGNLKYLDSR 352 (509)
Q Consensus 275 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~ls~-n~l~~~~~~~~~~l~~L~~L 352 (509)
+++++|++++|.+++..+..+..+++|++|++++|. ++...+..|..+++|++|++++ |.+++..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 366666776666665555566666777777777765 6544444566667777777776 66665555566666777777
Q ss_pred EcCCCcCCCCCccccCCCCCCC---EEECcCC-cCcccCcccccCCccCc-eeeeecccCCCcCcccccCCCcCCeEecc
Q 035522 353 SLDGNNLIGPIPPTIGYLTNLT---SLNLGYN-QLSSSIPPELMNCSQLQ-NLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427 (509)
Q Consensus 353 ~L~~n~l~~~~~~~~~~l~~L~---~L~L~~n-~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 427 (509)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..+..+++|+ .|++++|.+....+..+.. ++|++|+++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 777776664 444 56666666 7777777 66655555566677777 7777777766333333333 677777777
Q ss_pred cCc-CCcCChhhccCC-CCCCEEeCcCCcCcccCCccccCCCeEecccC
Q 035522 428 HNF-INGTIPSQLGNI-PNISAVDLSKNNLSGVVPASVRRIPKLIVSEN 474 (509)
Q Consensus 428 ~n~-l~~~~p~~~~~l-~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N 474 (509)
+|+ +++..+..+..+ ++|+.|++++|++++..+..+.+++.|+++++
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCTTCTTCSEEECTTC
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChhHhccCceeeccCc
Confidence 774 665445566666 67777777777776555555666666666654
No 88
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=2.8e-24 Score=213.61 Aligned_cols=244 Identities=19% Similarity=0.197 Sum_probs=120.3
Q ss_pred CchhccCCCCCCEEEccCCcCCccCC----ccccCCCCCcEEeccCCcC---CCcCCccC-------CCCCCCCEEECcC
Q 035522 123 IPSEIGALSKLQVLNLSQNHLTGTIP----SEIGSSRNLFQLDLSINIL---NGSIPLEI-------GNLKDLDYLMLQG 188 (509)
Q Consensus 123 ~~~~~~~l~~L~~L~L~~~~l~~~~~----~~l~~l~~L~~L~L~~n~~---~~~~p~~~-------~~l~~L~~L~L~~ 188 (509)
++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+ .+.+|..+ ..+++|++|++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~ 103 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD 103 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence 44455556666666666666654322 2344566666666666432 22333332 4556666666666
Q ss_pred CCCCC----CCcccccCCCCCCEEeccCCcCcccCCccc----CCC---------CCCcEEECcCCCCC-CCCchhhhCC
Q 035522 189 NKLDG----LIPSSIGNLTKLTGLNLSLNKLSGRLPREV----GNL---------KILELLYLDSNNLT-GPIPSTLYHL 250 (509)
Q Consensus 189 n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l----~~l---------~~L~~L~l~~n~l~-~~~~~~l~~~ 250 (509)
|.+.+ .++..+.++++|++|++++|.++...+..+ ..+ ++|++|++++|.++ ..++.
T Consensus 104 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~----- 178 (386)
T 2ca6_A 104 NAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE----- 178 (386)
T ss_dssp CCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHH-----
T ss_pred CcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHH-----
Confidence 66554 244455556666666666665543222222 222 55555555555554 12221
Q ss_pred CCcceeecccCcCCCCCchhccCCCCcceeecccccccC-----cchhhhcCCCCCCEEECcCCCCC----CCCccccCC
Q 035522 251 NPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG-----PISSTIGYLNLLEILDLSHNRLD----GPIPSTIGN 321 (509)
Q Consensus 251 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~-----~~~~~~~~~~~L~~L~l~~n~l~----~~~~~~~~~ 321 (509)
+...+..+++|+.|++++|.++. ..+..+..+++|++|++++|.++ ..+|..+..
T Consensus 179 ----------------l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~ 242 (386)
T 2ca6_A 179 ----------------WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKS 242 (386)
T ss_dssp ----------------HHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGG
T ss_pred ----------------HHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHcc
Confidence 00123333444444444444431 12223444555555555555543 234444555
Q ss_pred CCCcCeeeCccccCCcc----Ccccc--cCCCCCCEEEcCCCcCCC----CCcccc-CCCCCCCEEECcCCcCcccC
Q 035522 322 LTNLTSLVLSSNQLSGL----LPREV--GNLKYLDSRSLDGNNLIG----PIPPTI-GYLTNLTSLNLGYNQLSSSI 387 (509)
Q Consensus 322 l~~L~~L~ls~n~l~~~----~~~~~--~~l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~l~~~~ 387 (509)
+++|++|++++|.+++. ++..+ +.+++|+.|++++|.+.+ .+|..+ ..+++|++|++++|.+++..
T Consensus 243 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 243 WPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 55555555555555433 23333 225566666666666554 244444 34566666666666666443
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.8e-22 Score=192.89 Aligned_cols=203 Identities=24% Similarity=0.248 Sum_probs=106.8
Q ss_pred CCCCEEEccCCcCCccCCccc--cCCCCCcEEeccCCcCCCcCC----ccCCCCCCCCEEECcCCCCCCCCcccccCCCC
Q 035522 131 SKLQVLNLSQNHLTGTIPSEI--GSSRNLFQLDLSINILNGSIP----LEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTK 204 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l--~~l~~L~~L~L~~n~~~~~~p----~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 204 (509)
++|++|++++|.+.+..|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 456666666666666666555 566666666666666654333 22334556666666666665555555555666
Q ss_pred CCEEeccCCcCccc--C--CcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCch-hccCCCCcce
Q 035522 205 LTGLNLSLNKLSGR--L--PREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPK-EVGNMKNLKI 279 (509)
Q Consensus 205 L~~L~l~~n~l~~~--~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~ 279 (509)
|++|++++|++.+. + +..+..+++|++|++++|.++. ++.. +. .+..+++|++
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~---------------------~~~l~~~l~~L~~ 228 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGV---------------------CAALAAAGVQPHS 228 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHH---------------------HHHHHHHTCCCSS
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHH---------------------HHHHHhcCCCCCE
Confidence 66666666654321 1 1122445555555555555541 1211 00 1233445555
Q ss_pred eecccccccCcchhhhcCC---CCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCC
Q 035522 280 LLLHRNNLTGPISSTIGYL---NLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDG 356 (509)
Q Consensus 280 L~L~~n~~~~~~~~~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 356 (509)
|++++|.+++..|..+..+ ++|++|++++|.++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++
T Consensus 229 L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~ 303 (310)
T 4glp_A 229 LDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDG 303 (310)
T ss_dssp EECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSS
T ss_pred EECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcC
Confidence 5555555544434333333 45666666666655 3444432 5666666666666543 22 45556666666666
Q ss_pred CcCC
Q 035522 357 NNLI 360 (509)
Q Consensus 357 n~l~ 360 (509)
|.++
T Consensus 304 N~l~ 307 (310)
T 4glp_A 304 NPFL 307 (310)
T ss_dssp TTTS
T ss_pred CCCC
Confidence 6654
No 90
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=2.6e-22 Score=193.07 Aligned_cols=199 Identities=20% Similarity=0.148 Sum_probs=126.7
Q ss_pred CCCCEEECcCCCCCCCCcccc--CCCCCcCeeeCccccCCccCc----ccccCCCCCCEEEcCCCcCCCCCccccCCCCC
Q 035522 299 NLLEILDLSHNRLDGPIPSTI--GNLTNLTSLVLSSNQLSGLLP----REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTN 372 (509)
Q Consensus 299 ~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~ls~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 372 (509)
++|++|++++|.+++..|..+ ..+++|++|++++|.+++..+ ..+..+++|++|++++|.+.+..+..+..+++
T Consensus 91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~ 170 (310)
T 4glp_A 91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA 170 (310)
T ss_dssp SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence 457777777777666666655 666777777777777665433 23345667777777777776666666667777
Q ss_pred CCEEECcCCcCccc--C--cccccCCccCceeeeecccCCCcCcc----cccCCCcCCeEecccCcCCcCChhhccCC--
Q 035522 373 LTSLNLGYNQLSSS--I--PPELMNCSQLQNLVLSHNTLSGIFPS----EIGNLTHLRQLDLSHNFINGTIPSQLGNI-- 442 (509)
Q Consensus 373 L~~L~L~~n~l~~~--~--~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~L~~n~l~~~~p~~~~~l-- 442 (509)
|++|++++|++.+. + +..+..+++|++|++++|+++. ++. .+..+++|++|++++|.+.+..|..+..+
T Consensus 171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~ 249 (310)
T 4glp_A 171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW 249 (310)
T ss_dssp CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence 77777777776532 1 2223566677777777777752 222 23556777777777777776666555555
Q ss_pred -CCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCC-CCCCCCCccCcCCCcCC
Q 035522 443 -PNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSS-ENAPPPQAKPFKGNKGK 501 (509)
Q Consensus 443 -~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~-~~~~~l~~l~l~~N~~l 501 (509)
++|++|++++|+++......+.+|++|++++|++++ +|. ..+++++.+++++|+..
T Consensus 250 ~~~L~~L~Ls~N~l~~lp~~~~~~L~~L~Ls~N~l~~---~~~~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 250 SSALNSLNLSFAGLEQVPKGLPAKLRVLDLSSNRLNR---APQPDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CTTCCCEECCSSCCCSCCSCCCSCCSCEECCSCCCCS---CCCTTSCCCCSCEECSSTTTS
T ss_pred cCcCCEEECCCCCCCchhhhhcCCCCEEECCCCcCCC---CchhhhCCCccEEECcCCCCC
Confidence 577777777777773322233566677777777776 444 56677777777777653
No 91
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.87 E-value=4.6e-21 Score=178.44 Aligned_cols=180 Identities=28% Similarity=0.266 Sum_probs=131.7
Q ss_pred CcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcC
Q 035522 276 NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLD 355 (509)
Q Consensus 276 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 355 (509)
..+.++++++.++ .+|..+. +.++.|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 15 ~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 15 GKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 4556666666665 3343332 567777777777776666667777777777777777776666667777777777777
Q ss_pred CCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCC
Q 035522 356 GNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTI 435 (509)
Q Consensus 356 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 435 (509)
+|.+++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|++.+..
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 171 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVP 171 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccC
Confidence 77777666666777788888888888887665556677788888888888887666666778888888888888888666
Q ss_pred hhhccCCCCCCEEeCcCCcCccc
Q 035522 436 PSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 436 p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
+..+..+++|++|++++|++.+.
T Consensus 172 ~~~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 172 HGAFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTTTCTTCCEEECCSCCBCTT
T ss_pred HHHHhCCCCCCEEEeeCCceeCC
Confidence 66777888888888888888765
No 92
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.87 E-value=8.9e-22 Score=181.92 Aligned_cols=131 Identities=16% Similarity=0.115 Sum_probs=89.1
Q ss_pred CCcEEecCCCCCcceeCchhccCCCCCCEEEccCCc-CCccCCccccCCCCCcEEeccC-CcCCCcCCccCCCCCCCCEE
Q 035522 107 NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH-LTGTIPSEIGSSRNLFQLDLSI-NILNGSIPLEIGNLKDLDYL 184 (509)
Q Consensus 107 ~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~-l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L 184 (509)
+++.|++++|. +++..+..|..+++|++|++++|. +.+..+..|.++++|++|++++ |.+++..+..|.++++|++|
T Consensus 32 ~l~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 32 STQTLKLIETH-LRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TCCEEEEESCC-CSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred cccEEEEeCCc-ceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 67777777777 665555567777777777777775 6655555677777777777776 77775555566677777777
Q ss_pred ECcCCCCCCCCcccccCCCCCC---EEeccCC-cCcccCCcccCCCCCCc-EEECcCCCCC
Q 035522 185 MLQGNKLDGLIPSSIGNLTKLT---GLNLSLN-KLSGRLPREVGNLKILE-LLYLDSNNLT 240 (509)
Q Consensus 185 ~L~~n~~~~~~~~~l~~l~~L~---~L~l~~n-~l~~~~~~~l~~l~~L~-~L~l~~n~l~ 240 (509)
++++|.+++ +|. +..+++|+ +|++++| .+++..+..|.++++|+ +|++++|.++
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~ 169 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT 169 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC
T ss_pred eCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc
Confidence 777777665 343 66666666 7777766 66655555566666666 6666666655
No 93
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=3.5e-21 Score=184.77 Aligned_cols=192 Identities=24% Similarity=0.337 Sum_probs=96.1
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 035522 129 ALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGL 208 (509)
Q Consensus 129 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 208 (509)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+++. ..+..+++|++|
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L 112 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIKTL 112 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCEE
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCCEE
Confidence 34455555555555542 22 345555555555555555532 22 55555555555555555532 235555555555
Q ss_pred eccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeeccccccc
Q 035522 209 NLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLT 288 (509)
Q Consensus 209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~ 288 (509)
++++|.+++. + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|.++
T Consensus 113 ~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 186 (308)
T 1h6u_A 113 DLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKIS 186 (308)
T ss_dssp ECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccC
Confidence 5555555532 2 25555555555555555553221 4444555555555554443221 444555555555555554
Q ss_pred CcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCC
Q 035522 289 GPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLS 336 (509)
Q Consensus 289 ~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~ 336 (509)
+..+ +..+++|++|++++|.+++.. .+..+++|++|++++|.++
T Consensus 187 ~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 187 DISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred cChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 3322 445555555555555555322 2445555555555555554
No 94
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=2.5e-21 Score=185.79 Aligned_cols=193 Identities=30% Similarity=0.385 Sum_probs=92.2
Q ss_pred CCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEE
Q 035522 225 NLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEIL 304 (509)
Q Consensus 225 ~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 304 (509)
.+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. ..+.
T Consensus 39 ~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~-------- 104 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIA-------- 104 (308)
T ss_dssp HHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGT--------
T ss_pred HcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhc--------
Confidence 45556666666665552 22 34445555555555555443222 44444455555544444432 1344
Q ss_pred ECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCc
Q 035522 305 DLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLS 384 (509)
Q Consensus 305 ~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 384 (509)
.+++|++|++++|.+++. + .+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 105 ----------------~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~ 164 (308)
T 1h6u_A 105 ----------------GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVS 164 (308)
T ss_dssp ----------------TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred ----------------CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCC
Confidence 444444444444444432 1 14444455555555554443211 444555555555555554
Q ss_pred ccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcc
Q 035522 385 SSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 385 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
+. +. +..+++|+.|++++|.+.+..+ +..+++|++|++++|++.+.. .+..+++|+.|++++|++++
T Consensus 165 ~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 165 DL-TP-LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CC-GG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred CC-hh-hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 32 21 4455555555555555543221 445555555555555555332 24555555555555555543
No 95
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.85 E-value=3.3e-21 Score=198.49 Aligned_cols=187 Identities=28% Similarity=0.362 Sum_probs=125.7
Q ss_pred CcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCc
Q 035522 252 PLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLS 331 (509)
Q Consensus 252 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls 331 (509)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 45555555555554 34333 256666666666666 344 345677777777777765 554 433 77777777
Q ss_pred cccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcC
Q 035522 332 SNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF 411 (509)
Q Consensus 332 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~ 411 (509)
+|.+++ +|. .+++|+.|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777765 443 46777777777777765 444 46677888888887775 554 44 77888888888877 45
Q ss_pred cccccCCCcC-------CeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCC
Q 035522 412 PSEIGNLTHL-------RQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRI 466 (509)
Q Consensus 412 ~~~~~~l~~L-------~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l 466 (509)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..+
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l 253 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ 253 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence 55 443 66 88899999888 678777778899999999999988888766554
No 96
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.85 E-value=1.6e-20 Score=169.52 Aligned_cols=162 Identities=21% Similarity=0.187 Sum_probs=119.4
Q ss_pred CCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 035522 105 FPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184 (509)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 184 (509)
.++|++|++++|. +++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|
T Consensus 27 ~~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L 105 (208)
T 2o6s_A 27 PAQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKEL 105 (208)
T ss_dssp CTTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred CCCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEE
Confidence 4578888888888 665555567888888888888888886666667788888888888888886555567788888888
Q ss_pred ECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCC
Q 035522 185 MLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLV 264 (509)
Q Consensus 185 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~ 264 (509)
++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|+++.|.++
T Consensus 106 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~ 178 (208)
T 2o6s_A 106 ALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHS 178 (208)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCT
T ss_pred EcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCC
Confidence 888888877666667778888888888888776656567777888888888776553 2345666666666666
Q ss_pred CCCchhccCC
Q 035522 265 GPLPKEVGNM 274 (509)
Q Consensus 265 ~~~~~~l~~~ 274 (509)
|.+|..++.+
T Consensus 179 g~ip~~~~~l 188 (208)
T 2o6s_A 179 GVVRNSAGSV 188 (208)
T ss_dssp TTBBCTTSSB
T ss_pred ceeeccCccc
Confidence 6666655544
No 97
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.84 E-value=8.6e-21 Score=185.60 Aligned_cols=199 Identities=20% Similarity=0.137 Sum_probs=93.4
Q ss_pred cEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcch-hhhcCCCCCCE-EECc
Q 035522 230 ELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPIS-STIGYLNLLEI-LDLS 307 (509)
Q Consensus 230 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~-L~l~ 307 (509)
++++.++++++ .+|..+ .+++++|++++|+++...+..|.++++|++|+|++|.+.+.++ ..|.+++++++ +.+.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 45566666665 445443 2355666666666654433455556666666666665544333 23445555443 3334
Q ss_pred CCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCC-CcCCCCCccccCCCC-CCCEEECcCCcCcc
Q 035522 308 HNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDG-NNLIGPIPPTIGYLT-NLTSLNLGYNQLSS 385 (509)
Q Consensus 308 ~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~-n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~ 385 (509)
+|.++...|..|..+++|++|++++|++....+..+.....+..+++.+ +.+....+..+..+. .++.|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 4555544455555555555555555555544333344444444555533 223322222233322 34445555555542
Q ss_pred cCcccccCCccCceeeeec-ccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 386 SIPPELMNCSQLQNLVLSH-NTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 386 ~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
. +.......+|+++++.+ |.+....+..|..+++|++|++++|+++
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2 22222334445555443 2333222233444555555555555544
No 98
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.83 E-value=1e-19 Score=164.25 Aligned_cols=159 Identities=25% Similarity=0.223 Sum_probs=82.9
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEec
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL 210 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 210 (509)
++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..+.++++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 107 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELAL 107 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEc
Confidence 35666666666665444444555666666666666555443444455555666666655555444444555555555555
Q ss_pred cCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCc
Q 035522 211 SLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGP 290 (509)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 290 (509)
++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|+.|++..|.++|.
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ 180 (208)
T 2o6s_A 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGV 180 (208)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTT
T ss_pred CCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCce
Confidence 5555554444445555555555555555554333334445555555555544432 123444444444444444
Q ss_pred chhhhc
Q 035522 291 ISSTIG 296 (509)
Q Consensus 291 ~~~~~~ 296 (509)
+|..++
T Consensus 181 ip~~~~ 186 (208)
T 2o6s_A 181 VRNSAG 186 (208)
T ss_dssp BBCTTS
T ss_pred eeccCc
Confidence 444433
No 99
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.82 E-value=2.1e-19 Score=175.69 Aligned_cols=239 Identities=20% Similarity=0.187 Sum_probs=108.4
Q ss_pred EEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCc-ccccCCCCCCE-EeccC
Q 035522 135 VLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIP-SSIGNLTKLTG-LNLSL 212 (509)
Q Consensus 135 ~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~-L~l~~ 212 (509)
+++.++++++ .+|..+ .+++++|+|++|+++...+..|.++++|++|+|++|++.+.++ ..|.+++++++ +.+.+
T Consensus 13 ~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp EEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred EEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 3444444444 334333 2344455555554442222334445555555555554433322 23444444443 23333
Q ss_pred CcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeeccc-CcCCCCCchhccCC-CCcceeecccccccCc
Q 035522 213 NKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAY-NNLVGPLPKEVGNM-KNLKILLLHRNNLTGP 290 (509)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~-n~~~~~~~~~l~~~-~~L~~L~L~~n~~~~~ 290 (509)
|+++...|+.|..+++|++|++++|.+....+..+....++..+++.+ +.+....+..+..+ ..++.|++++|.++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i 169 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEI 169 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEE
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCC
Confidence 444444444455555555555555555433333333333444444433 22222222233333 2455566666666532
Q ss_pred chhhhcCCCCCCEEECcC-CCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCC
Q 035522 291 ISSTIGYLNLLEILDLSH-NRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGY 369 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 369 (509)
+.......+|+++++.+ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|.+.++.-...+| .+..
T Consensus 170 -~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~lP-~l~~ 244 (350)
T 4ay9_X 170 -HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKKLP-TLEK 244 (350)
T ss_dssp -CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCCCC-CTTT
T ss_pred -ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCcCC-Cchh
Confidence 22333344566666653 344433233455666666666666666533222 23444555544443333444 2455
Q ss_pred CCCCCEEECcCC
Q 035522 370 LTNLTSLNLGYN 381 (509)
Q Consensus 370 l~~L~~L~L~~n 381 (509)
+++|+.+++.++
T Consensus 245 l~~L~~l~l~~~ 256 (350)
T 4ay9_X 245 LVALMEASLTYP 256 (350)
T ss_dssp CCSCCEEECSCH
T ss_pred CcChhhCcCCCC
Confidence 666666666543
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.81 E-value=1.1e-19 Score=187.09 Aligned_cols=201 Identities=21% Similarity=0.300 Sum_probs=150.0
Q ss_pred CCCCC-----CCCce-ecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEE
Q 035522 63 TSDHC-----KWMGI-TCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVL 136 (509)
Q Consensus 63 ~~~~c-----~w~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L 136 (509)
..++| .|.++ .|. .++++.|+++++.+.+ + +..+ +++|+.|++++|. ++ .+| ..+++|++|
T Consensus 39 ~~~~~~~~~~~~~~l~~C~-~~~L~~L~Ls~n~L~~-l----p~~l--~~~L~~L~Ls~N~-l~-~ip---~~l~~L~~L 105 (571)
T 3cvr_A 39 QALPGENRNEAVSLLKECL-INQFSELQLNRLNLSS-L----PDNL--PPQITVLEITQNA-LI-SLP---ELPASLEYL 105 (571)
T ss_dssp TCCTTCCHHHHHHHHHHHH-HTTCSEEECCSSCCSC-C----CSCC--CTTCSEEECCSSC-CS-CCC---CCCTTCCEE
T ss_pred cCCccccccchhhhccccc-cCCccEEEeCCCCCCc-c----CHhH--cCCCCEEECcCCC-Cc-ccc---cccCCCCEE
Confidence 34567 68888 674 4589999999999887 3 4434 3789999999998 65 567 457889999
Q ss_pred EccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCc
Q 035522 137 NLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLS 216 (509)
Q Consensus 137 ~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 216 (509)
++++|.+++ +|. +.+ +|++|++++|.+++ +|. .+++|++|++++|.+++ +|. .+++|++|++++|.++
T Consensus 106 ~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~ 173 (571)
T 3cvr_A 106 DACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLT 173 (571)
T ss_dssp ECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCS
T ss_pred EccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCC
Confidence 999999986 666 654 89999999999885 665 67889999999999886 454 5788999999999988
Q ss_pred ccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCc-------ceeecccCcCCCCCchhccCCCCcceeecccccccC
Q 035522 217 GRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPL-------IEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 217 ~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L-------~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
+ +|. +. ++|++|++++|.++ .+|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|.+++
T Consensus 174 ~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~ 244 (571)
T 3cvr_A 174 F-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSS 244 (571)
T ss_dssp C-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCH
T ss_pred C-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCC
Confidence 5 666 55 88999999999888 5565 443 55 77777777776 356556567777777777777766
Q ss_pred cchhhhcC
Q 035522 290 PISSTIGY 297 (509)
Q Consensus 290 ~~~~~~~~ 297 (509)
.+|..+..
T Consensus 245 ~~p~~l~~ 252 (571)
T 3cvr_A 245 RIRESLSQ 252 (571)
T ss_dssp HHHHHHHH
T ss_pred cCHHHHHH
Confidence 66655544
No 101
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.80 E-value=7.9e-20 Score=179.52 Aligned_cols=179 Identities=23% Similarity=0.207 Sum_probs=91.8
Q ss_pred CEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCccccc-CCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcC
Q 035522 302 EILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVG-NLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGY 380 (509)
Q Consensus 302 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~-~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 380 (509)
+.++++++.++ .+|..+ .+.++.|++++|.+++..+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++
T Consensus 21 ~~l~c~~~~l~-~iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666655 344433 23455666666665554444444 555555555555555544444455555555555555
Q ss_pred CcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhc---cCCCCCCEEeCcCCcCcc
Q 035522 381 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQL---GNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 381 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~---~~l~~L~~L~ls~N~l~~ 457 (509)
|.+++..+..+..+++|+.|+|++|.+.+..+..|..+++|++|+|++|.+.+..+..+ ..+++|+
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~----------- 166 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLM----------- 166 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCC-----------
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCC-----------
Confidence 55554444444555555555555555554444445555555555555555543222222 2344444
Q ss_pred cCCccccCCCeEecccCccccCCCCCC---CCCCC--CCccCcCCCcCCCCcccc
Q 035522 458 VVPASVRRIPKLIVSENNLELENSTSS---ENAPP--PQAKPFKGNKGKQRKIVT 507 (509)
Q Consensus 458 ~~~~~~~~l~~L~ls~N~l~~~~~ip~---~~~~~--l~~l~l~~N~~lc~~~~~ 507 (509)
.|++++|++++ +|. ..++. +..+.+.+||+.|+|.+.
T Consensus 167 ----------~L~L~~N~l~~---l~~~~~~~l~~~~l~~l~l~~N~~~C~C~l~ 208 (361)
T 2xot_A 167 ----------LLDLSSNKLKK---LPLTDLQKLPAWVKNGLYLHNNPLECDCKLY 208 (361)
T ss_dssp ----------EEECCSSCCCC---CCHHHHHHSCHHHHTTEECCSSCEECCHHHH
T ss_pred ----------EEECCCCCCCc---cCHHHhhhccHhhcceEEecCCCccCCcCcH
Confidence 55555555544 443 12222 256777888888888754
No 102
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=3.2e-19 Score=162.23 Aligned_cols=134 Identities=18% Similarity=0.175 Sum_probs=67.4
Q ss_pred CCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCc
Q 035522 372 NLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLS 451 (509)
Q Consensus 372 ~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 451 (509)
+++.|++++|.+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..+..|..+++|++|+++
T Consensus 33 ~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 112 (220)
T 2v9t_B 33 TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLN 112 (220)
T ss_dssp TCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECC
Confidence 44444444444444333344444445555555554444444444555555555555555543333334445555555555
Q ss_pred CCcCcccCCccc---cCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCccccC
Q 035522 452 KNNLSGVVPASV---RRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 452 ~N~l~~~~~~~~---~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
+|++++..|..| .+|++|++++|++++ +|. ..+++++.+++.+||+.|.|.+.|
T Consensus 113 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~---~~~~~~~~l~~L~~L~L~~N~~~c~c~l~~ 172 (220)
T 2v9t_B 113 ANKINCLRVDAFQDLHNLNLLSLYDNKLQT---IAKGTFSPLRAIQTMHLAQNPFICDCHLKW 172 (220)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSC---CCTTTTTTCTTCCEEECCSSCEECSGGGHH
T ss_pred CCCCCEeCHHHcCCCCCCCEEECCCCcCCE---ECHHHHhCCCCCCEEEeCCCCcCCCCccHH
Confidence 555554444333 233355555555554 333 344566667777777777777655
No 103
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=6.7e-19 Score=167.37 Aligned_cols=171 Identities=29% Similarity=0.424 Sum_probs=98.3
Q ss_pred CCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEE
Q 035522 273 NMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSR 352 (509)
Q Consensus 273 ~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L 352 (509)
.+++|+.|++++|.+... + .+..+++|++|++++|.+++..+ +..+++|++|++++|.+++. ..+..+++|+.|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEE
Confidence 345555556655555432 2 34555666666666666554322 55566666666666665532 235566666666
Q ss_pred EcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 353 SLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 353 ~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
++++|.+.+. ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+..+ +..+++|++|++++|.++
T Consensus 118 ~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~ 191 (291)
T 1h6t_A 118 SLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS 191 (291)
T ss_dssp ECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCC
T ss_pred ECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh--hcCCCccCEEECCCCcCC
Confidence 6666665542 3455566666666666666643 345566666666666666664332 566666666666666665
Q ss_pred cCChhhccCCCCCCEEeCcCCcCcc
Q 035522 433 GTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 433 ~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
+ ++ .+..+++|+.|++++|+++.
T Consensus 192 ~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 192 D-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp B-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred C-Ch-hhccCCCCCEEECcCCcccC
Confidence 3 33 25666666666666666654
No 104
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.78 E-value=4.4e-18 Score=155.74 Aligned_cols=160 Identities=24% Similarity=0.244 Sum_probs=120.2
Q ss_pred CCCCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCc
Q 035522 63 TSDHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH 142 (509)
Q Consensus 63 ~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~ 142 (509)
+...|.|.++.|... .+.. + +..+ .++|++|++++|. +.+..|..|..+++|++|++++|.
T Consensus 15 ~~~~Cs~~~v~c~~~-----------~l~~-i----p~~~--~~~L~~L~Ls~n~-i~~~~~~~~~~l~~L~~L~L~~N~ 75 (229)
T 3e6j_A 15 SQCSCSGTTVDCRSK-----------RHAS-V----PAGI--PTNAQILYLHDNQ-ITKLEPGVFDSLINLKELYLGSNQ 75 (229)
T ss_dssp TTCEEETTEEECTTS-----------CCSS-C----CSCC--CTTCSEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCEEeCCEeEccCC-----------CcCc-c----CCCC--CCCCCEEEcCCCc-cCccCHHHhhCccCCcEEECCCCC
Confidence 678899999999632 1211 1 2222 2778888888888 777777778888888888888888
Q ss_pred CCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcc
Q 035522 143 LTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPRE 222 (509)
Q Consensus 143 l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~ 222 (509)
+....+..|..+++|++|++++|.+++..+..|..+++|++|++++|.++ .+|..+..+++|++|++++|.+++..+..
T Consensus 76 l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~ 154 (229)
T 3e6j_A 76 LGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGA 154 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTT
T ss_pred CCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHH
Confidence 87655566788888888888888888666666778888888888888887 55677778888888888888887666666
Q ss_pred cCCCCCCcEEECcCCCCCCC
Q 035522 223 VGNLKILELLYLDSNNLTGP 242 (509)
Q Consensus 223 l~~l~~L~~L~l~~n~l~~~ 242 (509)
+..+++|++|++++|.+...
T Consensus 155 ~~~l~~L~~L~l~~N~~~c~ 174 (229)
T 3e6j_A 155 FDRLSSLTHAYLFGNPWDCE 174 (229)
T ss_dssp TTTCTTCCEEECTTSCBCTT
T ss_pred HhCCCCCCEEEeeCCCccCC
Confidence 77788888888888877643
No 105
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=157.55 Aligned_cols=150 Identities=18% Similarity=0.270 Sum_probs=110.6
Q ss_pred CeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCc-cccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeec
Q 035522 326 TSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIP-PTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404 (509)
Q Consensus 326 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 404 (509)
+.+++++|.++. +|..+. +.++.|++++|.+++..+ ..+..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 578888887764 454443 356788888888876544 3467778888888888888876666777888888888888
Q ss_pred ccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCcccc---CCCeEecccCcccc
Q 035522 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVR---RIPKLIVSENNLEL 478 (509)
Q Consensus 405 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~---~l~~L~ls~N~l~~ 478 (509)
|.+.+..+..|..+++|++|++++|.+.+..|..+..+++|++|++++|++++..|..+. ++++|++++|++.+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 888777676777888888888888888877777777888888888888888777665544 34477777777765
No 106
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.77 E-value=4.5e-18 Score=154.61 Aligned_cols=151 Identities=22% Similarity=0.271 Sum_probs=88.4
Q ss_pred EEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCc
Q 035522 303 ILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQ 382 (509)
Q Consensus 303 ~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 382 (509)
.++.+++.++ .+|..+. +++++|++++|.+++..+..|..+++|+.|++++|.+.+..|..+..+++|++|++++|.
T Consensus 15 ~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 91 (220)
T 2v9t_B 15 IVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91 (220)
T ss_dssp EEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSC
T ss_pred EEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCc
Confidence 4455555544 2333322 455566666665555444455555666666666666655555556666666666666666
Q ss_pred CcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCc
Q 035522 383 LSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
+++..+..+..+++|+.|++++|.+.+..|..|..+++|++|+|++|.+++..+..+..+++|++|++++|++.
T Consensus 92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 66444444555666666666666666555566666666666666666666555555666666666666666654
No 107
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.77 E-value=4.5e-18 Score=154.59 Aligned_cols=154 Identities=19% Similarity=0.245 Sum_probs=99.0
Q ss_pred CEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCc-ccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcC
Q 035522 302 EILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLP-REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGY 380 (509)
Q Consensus 302 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 380 (509)
+.+++++|.++ .+|..+ .+.+++|++++|.+++..+ ..+..+++|+.|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35566666555 244433 2345666666666665433 3356666666666666666655555666667777777777
Q ss_pred CcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCccc
Q 035522 381 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 381 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
|.+++..+..+..+++|++|++++|.+.+..|..|..+++|++|+|++|++++..|..+..+++|++|++++|++.+.
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 777665555666677777777777777766666677777777777777777766666777777777777777776643
No 108
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.77 E-value=2.4e-18 Score=163.56 Aligned_cols=103 Identities=33% Similarity=0.446 Sum_probs=43.7
Q ss_pred CCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 130 LSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 130 l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+ +.++++|++|++++|.+++. ..+..+++|++|+
T Consensus 45 l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 118 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLS 118 (291)
T ss_dssp HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEE
T ss_pred cCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEE
Confidence 34444444444444422 2 24444444444444444442222 44444444444444444431 1244444444444
Q ss_pred ccCCcCcccCCcccCCCCCCcEEECcCCCCC
Q 035522 210 LSLNKLSGRLPREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 210 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 240 (509)
+++|.+++. ..+..+++|++|++++|.++
T Consensus 119 L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~ 147 (291)
T 1h6t_A 119 LEHNGISDI--NGLVHLPQLESLYLGNNKIT 147 (291)
T ss_dssp CTTSCCCCC--GGGGGCTTCCEEECCSSCCC
T ss_pred CCCCcCCCC--hhhcCCCCCCEEEccCCcCC
Confidence 444444321 22334444444444444443
No 109
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.76 E-value=4.2e-18 Score=167.17 Aligned_cols=178 Identities=28% Similarity=0.266 Sum_probs=154.1
Q ss_pred cceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccC-CCCCcCeeeCccccCCccCcccccCCCCCCEEEcC
Q 035522 277 LKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIG-NLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLD 355 (509)
Q Consensus 277 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~ 355 (509)
-+.++++++.++. +|..+ .+.++.|++++|.+++..+..+. .+++|++|++++|++++..+..|..+++|+.|+++
T Consensus 20 ~~~l~c~~~~l~~-iP~~~--~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls 96 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS 96 (361)
T ss_dssp TTEEECCSSCCSS-CCSSC--CTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccC--CCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence 3678999998874 55544 35699999999999987777787 89999999999999998888889999999999999
Q ss_pred CCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccc---cCCCcCCeEecccCcCC
Q 035522 356 GNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEI---GNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 356 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~ 432 (509)
+|++.+..+..+..+++|++|++++|.+++..+..+..+++|+.|+|++|.+.+..+..| ..+++|+.|+|++|++.
T Consensus 97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~ 176 (361)
T 2xot_A 97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176 (361)
T ss_dssp SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence 999997777788999999999999999998888899999999999999999996554445 56999999999999999
Q ss_pred cCChhhccCCCC--CCEEeCcCCcCcc
Q 035522 433 GTIPSQLGNIPN--ISAVDLSKNNLSG 457 (509)
Q Consensus 433 ~~~p~~~~~l~~--L~~L~ls~N~l~~ 457 (509)
+..+..+..++. ++.|++++|++..
T Consensus 177 ~l~~~~~~~l~~~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 177 KLPLTDLQKLPAWVKNGLYLHNNPLEC 203 (361)
T ss_dssp CCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred ccCHHHhhhccHhhcceEEecCCCccC
Confidence 766677888887 4889999999874
No 110
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=6.7e-18 Score=175.76 Aligned_cols=173 Identities=24% Similarity=0.349 Sum_probs=101.6
Q ss_pred cCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCC
Q 035522 102 FTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDL 181 (509)
Q Consensus 102 l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L 181 (509)
+..+++|+.|++++|. +.. ++ .+..+++|++|+|++|.+.+..+ +..+++|+.|+|++|.+.+ +| .+..+++|
T Consensus 39 ~~~L~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~~L 111 (605)
T 1m9s_A 39 QNELNSIDQIIANNSD-IKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLKKL 111 (605)
T ss_dssp HHHHTTCCCCBCTTCC-CCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCTTC
T ss_pred hhcCCCCCEEECcCCC-CCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCCCC
Confidence 3455666666666666 332 22 46666666666666666664333 6666666666666666653 23 46666666
Q ss_pred CEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccC
Q 035522 182 DYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 182 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
++|++++|.+.+. ..+..+++|+.|++++|.+++. ..+..+++|+.|++++|.+.+..| +..+++|++|++++|
T Consensus 112 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 185 (605)
T 1m9s_A 112 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 185 (605)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSS
T ss_pred CEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCC
Confidence 6666666666643 3456666666666666666543 345566666666666666654433 555566666666666
Q ss_pred cCCCCCchhccCCCCcceeecccccccC
Q 035522 262 NLVGPLPKEVGNMKNLKILLLHRNNLTG 289 (509)
Q Consensus 262 ~~~~~~~~~l~~~~~L~~L~L~~n~~~~ 289 (509)
.+.+. ..+..+++|+.|+|++|.+.+
T Consensus 186 ~i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 186 HISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCCC--hHHccCCCCCEEEccCCcCcC
Confidence 55542 235555555555555555543
No 111
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.75 E-value=5.9e-18 Score=176.17 Aligned_cols=187 Identities=27% Similarity=0.341 Sum_probs=93.4
Q ss_pred cEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCC
Q 035522 230 ELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN 309 (509)
Q Consensus 230 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n 309 (509)
..+.+..+.+.... .+..++.|+.|++++|.+... + .+..+++|+.|+|++|.+++..+ +..+++|+.|++++|
T Consensus 24 ~~l~l~~~~i~~~~--~~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N 97 (605)
T 1m9s_A 24 IKDNLKKKSVTDAV--TQNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN 97 (605)
T ss_dssp HHHHTTCSCTTSEE--CHHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSS
T ss_pred HHHhccCCCccccc--chhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCC
Confidence 33444444444222 234455566666666555432 2 35555566666666655554332 555555555555555
Q ss_pred CCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcc
Q 035522 310 RLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPP 389 (509)
Q Consensus 310 ~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 389 (509)
.+++ ++ .+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+.+. ..+..+++|+.|+|++|.+.+..+
T Consensus 98 ~l~~-l~-~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~- 170 (605)
T 1m9s_A 98 KIKD-LS-SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP- 170 (605)
T ss_dssp CCCC-CT-TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG-
T ss_pred CCCC-Ch-hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh-
Confidence 5553 22 345555555555555555432 2344555555555555555432 344455555555555555553333
Q ss_pred cccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCC
Q 035522 390 ELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 390 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
+..+++|+.|+|++|.+.+. + .+..+++|+.|+|++|.+.
T Consensus 171 -l~~l~~L~~L~Ls~N~i~~l-~-~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 171 -LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp -GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEECCSEEEE
T ss_pred -hccCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEccCCcCc
Confidence 44455555555555555432 2 3444555555555555544
No 112
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.75 E-value=4.9e-19 Score=188.91 Aligned_cols=260 Identities=20% Similarity=0.172 Sum_probs=137.3
Q ss_pred chhHHHHHHHHHHhccCCC-CCCCCCCCCCCCCCCCCCCceecCCCCCEEEEEcCCCCCcccccccCCCccCCCCCCcEE
Q 035522 33 ASDASSAIQLEREALLNSG-WWNSSWATANYTSDHCKWMGITCNSAGSIVEISSYEMDNNGNAAELSQFNFTCFPNLITF 111 (509)
Q Consensus 33 ~~~~~~~l~~~~~~~~~~~-~~~~~w~~~~~~~~~c~w~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L 111 (509)
...+++++.++..+...+. ..-..|.. ..+..+.|.+..+. .++++++++..+.+.... ..+.....|+.+
T Consensus 130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~~-----~~~l~~l~Ls~~ 201 (727)
T 4b8c_D 130 VDCTKQALMEMADTLTDSKTAKKQQPTG--DSTPSGTATNSAVS-TPLTPKIELFANGKDEAN-----QALLQHKKLSQY 201 (727)
T ss_dssp --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred cccchhhhhhhhhhcccccCcccCCCcC--CCCccccCCCceec-CCccceEEeeCCCCCcch-----hhHhhcCccCcc
Confidence 3456678888887764322 22335643 24456678887775 468999999888776532 222222333333
Q ss_pred e-----cCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEEC
Q 035522 112 K-----ISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLML 186 (509)
Q Consensus 112 ~-----l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 186 (509)
. ++.|. +. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|+++++|++|+|
T Consensus 202 ~i~~~~~~~n~-~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L 277 (727)
T 4b8c_D 202 SIDEDDDIENR-MV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDL 277 (727)
T ss_dssp ----------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEEC
T ss_pred cccCccccccc-ee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeC
Confidence 3 22333 22 34677899999999999999998 78888889999999999999999 88999999999999999
Q ss_pred cCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCC-cceeecccCcCCC
Q 035522 187 QGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNP-LIEWYLAYNNLVG 265 (509)
Q Consensus 187 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~-L~~L~l~~n~~~~ 265 (509)
++|.++ .+|..+.++++|++|++++|.++ .+|..|+.+++|++|++++|.+++.+|..+..... ...+++++|.+++
T Consensus 278 s~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~ 355 (727)
T 4b8c_D 278 SHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEI 355 (727)
T ss_dssp TTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCC
T ss_pred cCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccC
Confidence 999999 67989999999999999999997 77888999999999999999999988888766532 3357899999998
Q ss_pred CCchhccCCCCcceeecccc--------cccCcchhhhcCCCCCCEEECcCCCCC
Q 035522 266 PLPKEVGNMKNLKILLLHRN--------NLTGPISSTIGYLNLLEILDLSHNRLD 312 (509)
Q Consensus 266 ~~~~~l~~~~~L~~L~L~~n--------~~~~~~~~~~~~~~~L~~L~l~~n~l~ 312 (509)
.+|.. |+.|+++.| .+.+..+..+..+..++...++.|.+.
T Consensus 356 ~~p~~------l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 356 PLPHE------RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp CCCCC-----------------------------------------------CCC
T ss_pred cCccc------cceeEeecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 87754 455556655 233333334445555666667777654
No 113
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.75 E-value=2.3e-17 Score=150.96 Aligned_cols=154 Identities=27% Similarity=0.313 Sum_probs=101.9
Q ss_pred CEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCC
Q 035522 302 EILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYN 381 (509)
Q Consensus 302 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 381 (509)
+.++.+++.++ .+|..+ .++|++|++++|.+++..+..+..+++|+.|++++|.+....+..+..+++|++|++++|
T Consensus 22 ~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N 98 (229)
T 3e6j_A 22 TTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN 98 (229)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCC
Confidence 45555555554 344333 256666666666666665666666666777777776665444445566777777777777
Q ss_pred cCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccC
Q 035522 382 QLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVV 459 (509)
Q Consensus 382 ~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 459 (509)
.+++..+..+..+++|+.|++++|.+. .+|..+..+++|++|++++|++.+..+..+..+++|+.|++++|++.+..
T Consensus 99 ~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c 175 (229)
T 3e6j_A 99 QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCEC 175 (229)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTB
T ss_pred cCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCc
Confidence 777555555667777777777777776 55666777777777777777777555566777777777777777776543
No 114
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.4e-17 Score=148.68 Aligned_cols=106 Identities=19% Similarity=0.238 Sum_probs=47.1
Q ss_pred CCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEE
Q 035522 129 ALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGL 208 (509)
Q Consensus 129 ~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L 208 (509)
.+++|++|++++|.+. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|++|
T Consensus 42 ~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 117 (197)
T 4ezg_A 42 QMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117 (197)
T ss_dssp HHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEE
T ss_pred hcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEE
Confidence 3444555555555554 333 3444555555555555332 11234444444444444444444333444444444444
Q ss_pred eccCCcCcccCCcccCCCCCCcEEECcCCC
Q 035522 209 NLSLNKLSGRLPREVGNLKILELLYLDSNN 238 (509)
Q Consensus 209 ~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~ 238 (509)
++++|.+++..+..+..+++|++|++++|.
T Consensus 118 ~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~ 147 (197)
T 4ezg_A 118 DISHSAHDDSILTKINTLPKVNSIDLSYNG 147 (197)
T ss_dssp ECCSSBCBGGGHHHHTTCSSCCEEECCSCT
T ss_pred EecCCccCcHhHHHHhhCCCCCEEEccCCC
Confidence 444444443333334444444444444443
No 115
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.73 E-value=1.7e-17 Score=148.23 Aligned_cols=153 Identities=16% Similarity=0.203 Sum_probs=102.5
Q ss_pred CCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCC
Q 035522 103 TCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLD 182 (509)
Q Consensus 103 ~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~ 182 (509)
..+++|+.|++++|. +. .+| .+..+++|++|++++|.+. .+..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 41 ~~l~~L~~L~l~~n~-i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQMNSLTYITLANIN-VT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHHHTCCEEEEESSC-CS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhcCCccEEeccCCC-cc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 445667777777776 44 444 4677777777777777554 234667777777777777777766666777777777
Q ss_pred EEECcCCCCCCCCcccccCCCCCCEEeccCCc-CcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccC
Q 035522 183 YLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNK-LSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYN 261 (509)
Q Consensus 183 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n 261 (509)
+|++++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N 191 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ 191 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred EEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence 77777777776666777777777777777776 54 344 46777777777777777764 22 4555666666666666
Q ss_pred cCC
Q 035522 262 NLV 264 (509)
Q Consensus 262 ~~~ 264 (509)
++.
T Consensus 192 ~i~ 194 (197)
T 4ezg_A 192 TIG 194 (197)
T ss_dssp ---
T ss_pred ccC
Confidence 553
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.72 E-value=1.2e-19 Score=187.74 Aligned_cols=118 Identities=23% Similarity=0.305 Sum_probs=88.5
Q ss_pred CCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecc
Q 035522 348 YLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLS 427 (509)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 427 (509)
.|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..++.+++|+.|++++|.+++ +| .+..+++|++|+|+
T Consensus 442 ~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls 516 (567)
T 1dce_A 442 DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLC 516 (567)
T ss_dssp TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECC
T ss_pred CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECC
Confidence 47778888887775 555 777788888888888887 667777888888888888888875 56 67788888888888
Q ss_pred cCcCCcCC-hhhccCCCCCCEEeCcCCcCcccCCcc------ccCCCeEe
Q 035522 428 HNFINGTI-PSQLGNIPNISAVDLSKNNLSGVVPAS------VRRIPKLI 470 (509)
Q Consensus 428 ~n~l~~~~-p~~~~~l~~L~~L~ls~N~l~~~~~~~------~~~l~~L~ 470 (509)
+|.+++.. |..+..+++|+.|++++|++++..|.. +++|+.|+
T Consensus 517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~ 566 (567)
T 1dce_A 517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566 (567)
T ss_dssp SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEE
T ss_pred CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccC
Confidence 88887665 777888888888888888887765532 45555554
No 117
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.71 E-value=1.4e-17 Score=155.61 Aligned_cols=166 Identities=25% Similarity=0.325 Sum_probs=76.9
Q ss_pred cceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCC
Q 035522 277 LKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDG 356 (509)
Q Consensus 277 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~ 356 (509)
++.++++++.+++.. .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+ +..+++|+.|++++
T Consensus 21 l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 21 AVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECCS
T ss_pred HHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECCC
Confidence 344444444443221 23344444555555444442 22 34444455555555554443322 44445555555555
Q ss_pred CcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCCh
Q 035522 357 NNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIP 436 (509)
Q Consensus 357 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p 436 (509)
|++.+ ++.. .. ++|++|++++|++++. + .+..+++|+.|++++|++++. + .+..+++|++|++++|.+.+.
T Consensus 95 N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~-- 165 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT-- 165 (263)
T ss_dssp SCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--
T ss_pred CccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--
Confidence 54443 2211 11 4555555555555532 2 344555555555555555432 2 344555555555555555533
Q ss_pred hhccCCCCCCEEeCcCCcCcc
Q 035522 437 SQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 437 ~~~~~l~~L~~L~ls~N~l~~ 457 (509)
..+..+++|+.|++++|++++
T Consensus 166 ~~l~~l~~L~~L~l~~N~~~~ 186 (263)
T 1xeu_A 166 GGLTRLKKVNWIDLTGQKCVN 186 (263)
T ss_dssp TTSTTCCCCCEEEEEEEEEEC
T ss_pred HHhccCCCCCEEeCCCCcccC
Confidence 344555555555555555543
No 118
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.71 E-value=1.3e-19 Score=187.47 Aligned_cols=121 Identities=23% Similarity=0.274 Sum_probs=63.4
Q ss_pred cCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeec
Q 035522 325 LTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404 (509)
Q Consensus 325 L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 404 (509)
|+.|++++|.+++ +|. ++.+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++
T Consensus 443 L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~ 517 (567)
T 1dce_A 443 VRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCN 517 (567)
T ss_dssp CSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCS
T ss_pred ceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCC
Confidence 4444444444443 232 444455555555555554 445555555555555555555553 34 455555666666666
Q ss_pred ccCCCcC-cccccCCCcCCeEecccCcCCcCChh---hccCCCCCCEEeC
Q 035522 405 NTLSGIF-PSEIGNLTHLRQLDLSHNFINGTIPS---QLGNIPNISAVDL 450 (509)
Q Consensus 405 n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p~---~~~~l~~L~~L~l 450 (509)
|.+++.. |..+..+++|+.|++++|.+++..|. .+..+++|+.|++
T Consensus 518 N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 518 NRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp SCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHHHHCcccCccCC
Confidence 6665444 55566666666666666666544331 2233566666653
No 119
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.70 E-value=8.3e-18 Score=162.96 Aligned_cols=102 Identities=19% Similarity=0.100 Sum_probs=50.7
Q ss_pred CCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCc-eeeeecccCCCcCcccccCCCcCCeE
Q 035522 346 LKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQ-NLVLSHNTLSGIFPSEIGNLTHLRQL 424 (509)
Q Consensus 346 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L 424 (509)
+++|+.+++++|.++...+..|.++.+|+.+++.+| +....+.+|.+|++|+ .+++.+ .+....+..|.+|++|+.+
T Consensus 225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l 302 (329)
T 3sb4_A 225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV 302 (329)
T ss_dssp CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence 344444444444444333334444555555555444 4433444455555555 555554 4443444555555555555
Q ss_pred ecccCcCCcCChhhccCCCCCCEEe
Q 035522 425 DLSHNFINGTIPSQLGNIPNISAVD 449 (509)
Q Consensus 425 ~L~~n~l~~~~p~~~~~l~~L~~L~ 449 (509)
++++|.+....+..|.++++|+.++
T Consensus 303 ~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 303 LATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp EECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EeCCCccCccchhhhcCCcchhhhc
Confidence 5555555544444555555555554
No 120
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.69 E-value=2.2e-17 Score=159.90 Aligned_cols=288 Identities=14% Similarity=0.112 Sum_probs=149.0
Q ss_pred CCCCcEEecCCCCCcceeCchhccC-CCCCCEEEccCCcCC--ccCCccccCCCCCcEEeccCCcCCCcCCccCCC----
Q 035522 105 FPNLITFKISGTGFLSGRIPSEIGA-LSKLQVLNLSQNHLT--GTIPSEIGSSRNLFQLDLSINILNGSIPLEIGN---- 177 (509)
Q Consensus 105 l~~L~~L~l~~~~~~~~~~~~~~~~-l~~L~~L~L~~~~l~--~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~---- 177 (509)
+++++.|.++++ +...-...+.. +++|++|||++|.+. ..... .++.++.+.+..+.+. +..|.+
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I~---~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFVP---AYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEEC---TTTTEEEETT
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcceeEEecCccc---cccccccccccccccC---HHHhcccccc
Confidence 456677776543 11111122333 667777777777765 21111 2222344444444222 234555
Q ss_pred ----CCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCc
Q 035522 178 ----LKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPL 253 (509)
Q Consensus 178 ----l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L 253 (509)
+++|++|++.+ .++.+.+..|.++++|+.+++.+|.+....+.+|.++.++..+....+.. ..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~-------~~----- 162 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDA-------YR----- 162 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHH-------HH-----
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhh-------hh-----
Confidence 67777777766 66655556677777777777777766655556666665555555443210 00
Q ss_pred ceeecccCcCCCCCchhccCCCCcc-eeecccccccCcchhhh----cCCCCCCEEECcCCCCCCCCccccCCCCCcCee
Q 035522 254 IEWYLAYNNLVGPLPKEVGNMKNLK-ILLLHRNNLTGPISSTI----GYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSL 328 (509)
Q Consensus 254 ~~L~l~~n~~~~~~~~~l~~~~~L~-~L~L~~n~~~~~~~~~~----~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 328 (509)
.........|..+..|+ .+.+.... .++..+ ....+++.+.+.++-...........+++|+++
T Consensus 163 --------~~~~i~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l 231 (329)
T 3sb4_A 163 --------FKNRWEHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSL 231 (329)
T ss_dssp --------TSTTTTTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEE
T ss_pred --------ccccccccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEE
Confidence 00001111222233333 22222110 111110 123334444444431110000011125566666
Q ss_pred eCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCC-EEECcCCcCcccCcccccCCccCceeeeecccC
Q 035522 329 VLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLT-SLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTL 407 (509)
Q Consensus 329 ~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l 407 (509)
++++|.++......|.++++|+.+++.+| +....+..|.++++|+ .+++.+ .++...+.+|.+|++|+.+++.+|.+
T Consensus 232 ~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i 309 (329)
T 3sb4_A 232 DISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKI 309 (329)
T ss_dssp ECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCC
T ss_pred ECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCcc
Confidence 66666666555556666666666666665 4444455666777777 777766 56555566777777777777777777
Q ss_pred CCcCcccccCCCcCCeEec
Q 035522 408 SGIFPSEIGNLTHLRQLDL 426 (509)
Q Consensus 408 ~~~~~~~~~~l~~L~~L~L 426 (509)
....+..|.++++|+.++.
T Consensus 310 ~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 310 TTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp CEECTTTTCTTCCCCEEEC
T ss_pred CccchhhhcCCcchhhhcc
Confidence 7666667777777777753
No 121
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.69 E-value=5.7e-17 Score=151.54 Aligned_cols=167 Identities=23% Similarity=0.257 Sum_probs=89.2
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEE
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLM 185 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 185 (509)
.+++.++++++. +++. + .+..+++|++|++++|.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|+
T Consensus 19 ~~l~~l~l~~~~-i~~~-~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~ 91 (263)
T 1xeu_A 19 ANAVKQNLGKQS-VTDL-V-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELS 91 (263)
T ss_dssp HHHHHHHHTCSC-TTSE-E-CHHHHTTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEE
T ss_pred HHHHHHHhcCCC-cccc-c-chhhcCcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEE
Confidence 344455555555 3322 2 3455566666666666665 333 45566666666666666653322 55666666666
Q ss_pred CcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCC
Q 035522 186 LQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVG 265 (509)
Q Consensus 186 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~ 265 (509)
+++|++++. +. +.. ++|++|++++|.+++. + .+..+++|++|++++|.+++. + .+..+++|++|++++|.+++
T Consensus 92 L~~N~l~~l-~~-~~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~ 164 (263)
T 1xeu_A 92 VNRNRLKNL-NG-IPS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITN 164 (263)
T ss_dssp CCSSCCSCC-TT-CCC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCB
T ss_pred CCCCccCCc-Cc-ccc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcc
Confidence 666666543 21 222 5666666666666532 2 355566666666666665532 2 44555555555555555544
Q ss_pred CCchhccCCCCcceeeccccccc
Q 035522 266 PLPKEVGNMKNLKILLLHRNNLT 288 (509)
Q Consensus 266 ~~~~~l~~~~~L~~L~L~~n~~~ 288 (509)
. ..+..+++|+.|++++|.++
T Consensus 165 ~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 165 T--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp C--TTSTTCCCCCEEEEEEEEEE
T ss_pred h--HHhccCCCCCEEeCCCCccc
Confidence 3 33444555555555555544
No 122
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.68 E-value=2.3e-16 Score=140.13 Aligned_cols=174 Identities=20% Similarity=0.236 Sum_probs=95.1
Q ss_pred CeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCcc-ccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeec
Q 035522 326 TSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPP-TIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSH 404 (509)
Q Consensus 326 ~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~ 404 (509)
+.++++++.++ .+|..+. .+++.|++++|.+.+..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 34455555443 2333222 2555555555555543332 255566666666666666655566666666666666666
Q ss_pred ccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcCcccCCc-cccC-CCeEecccCccccCCCC
Q 035522 405 NTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVPA-SVRR-IPKLIVSENNLELENST 482 (509)
Q Consensus 405 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~-~~~~-l~~L~ls~N~l~~~~~i 482 (509)
|++.+..+..|..+++|++|++++|++++..|..+..+++|++|++++|++++..+. .+.. +....+..+.... ..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C--~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARC--GA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBB--CS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCC--CC
Confidence 666665555566666777777777777666666666677777777777776654331 1110 1111223333333 23
Q ss_pred CCCCCCCCCccCcCCCcCCCCcc
Q 035522 483 SSENAPPPQAKPFKGNKGKQRKI 505 (509)
Q Consensus 483 p~~~~~~l~~l~l~~N~~lc~~~ 505 (509)
| ..+......++..+...|..+
T Consensus 166 P-~~l~~~~l~~l~~~~~~C~~~ 187 (192)
T 1w8a_A 166 P-SKVRDVQIKDLPHSEFKCSSE 187 (192)
T ss_dssp S-TTTTTSBGGGSCTTTCCCCCC
T ss_pred C-hHHcCCChhhCcHhhcCcCCC
Confidence 3 234444555666666666654
No 123
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.66 E-value=3.5e-17 Score=174.55 Aligned_cols=218 Identities=24% Similarity=0.242 Sum_probs=123.1
Q ss_pred CCCcEEecCCCCCcceeCchhccCCCCCCEEE-----ccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCC
Q 035522 106 PNLITFKISGTGFLSGRIPSEIGALSKLQVLN-----LSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKD 180 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~-----L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 180 (509)
+.++.|++.++. +.. .+..+.....|+.+. +..|.+. ..+..+..++.|+.|+|++|.+. .+|..+.++++
T Consensus 173 ~~~~~l~L~~n~-~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 173 PLTPKIELFANG-KDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CccceEEeeCCC-CCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 567888888777 443 343333333333333 3334444 56778899999999999999998 78878889999
Q ss_pred CCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeeccc
Q 035522 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAY 260 (509)
Q Consensus 181 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 260 (509)
|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..++.+++|++|++++|.++ .+|..|..+++|++|++++
T Consensus 249 L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 249 LTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred CCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 999999999999 77888999999999999999999 77999999999999999999997 7788899999999999999
Q ss_pred CcCCCCCchhccCCC-CcceeecccccccCcchhhhcCCCCCCEEECcCC--------CCCCCCccccCCCCCcCeeeCc
Q 035522 261 NNLVGPLPKEVGNMK-NLKILLLHRNNLTGPISSTIGYLNLLEILDLSHN--------RLDGPIPSTIGNLTNLTSLVLS 331 (509)
Q Consensus 261 n~~~~~~~~~l~~~~-~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n--------~l~~~~~~~~~~l~~L~~L~ls 331 (509)
|.+++.+|..+.... ....+++++|.+++.+|. .|+.|+++.| .+.+..+..+..+..++...++
T Consensus 326 N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls 399 (727)
T 4b8c_D 326 NPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLS 399 (727)
T ss_dssp SCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C---------------------------------------
T ss_pred CccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeEeecccccccccCCccccccchhhcccccceeeee
Confidence 999988887765432 233478899999877664 4556666665 2333333334455555666666
Q ss_pred cccCC
Q 035522 332 SNQLS 336 (509)
Q Consensus 332 ~n~l~ 336 (509)
+|.+.
T Consensus 400 ~Nil~ 404 (727)
T 4b8c_D 400 YNTLC 404 (727)
T ss_dssp --CCC
T ss_pred ccccc
Confidence 66553
No 124
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.65 E-value=2.6e-16 Score=139.69 Aligned_cols=172 Identities=23% Similarity=0.296 Sum_probs=121.3
Q ss_pred CEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcc-cccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcC
Q 035522 302 EILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPR-EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGY 380 (509)
Q Consensus 302 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 380 (509)
+.++++++.++ .+|..+. .++++|++++|.+++..+. .+..+++|++|++++|.+++..|..+..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 56777777765 4555442 3777788888877765543 367788888888888888877777788888888888888
Q ss_pred CcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChh-hccCCCCCCEEeCcCCcCcccC
Q 035522 381 NQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPS-QLGNIPNISAVDLSKNNLSGVV 459 (509)
Q Consensus 381 n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~ 459 (509)
|++++..+..+..+++|++|++++|++++..|..+..+++|++|++++|.+.+..+. ++.. .++...+.++......
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~~ 165 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCGA 165 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBCS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCCC
Confidence 888877777777888888888888888877788888888888888888888765441 1111 1122234445555566
Q ss_pred CccccCCCeEecccCcccc
Q 035522 460 PASVRRIPKLIVSENNLEL 478 (509)
Q Consensus 460 ~~~~~~l~~L~ls~N~l~~ 478 (509)
|..+......++..+.+..
T Consensus 166 P~~l~~~~l~~l~~~~~~C 184 (192)
T 1w8a_A 166 PSKVRDVQIKDLPHSEFKC 184 (192)
T ss_dssp STTTTTSBGGGSCTTTCCC
T ss_pred ChHHcCCChhhCcHhhcCc
Confidence 7777666666777776654
No 125
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.65 E-value=1.3e-14 Score=144.09 Aligned_cols=329 Identities=14% Similarity=0.061 Sum_probs=163.6
Q ss_pred CCccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCC
Q 035522 99 QFNFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNL 178 (509)
Q Consensus 99 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l 178 (509)
..+|.++.+|+.+.+..+ ++..-..+|.+|.+|+.+++.++ +.......|.++.+|+.+.+..+ +.......|.++
T Consensus 64 ~~AF~~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp TTTTTTCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHhhCCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 567788888888888644 44334556788888888888654 54455566777777777766543 332334445555
Q ss_pred CCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeec
Q 035522 179 KDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYL 258 (509)
Q Consensus 179 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l 258 (509)
..++....... .......|.++++|+.+.+.++. .......|.++.+|+.+.+..+ +...-...+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 43333222222 22233456777777777776543 2244455666777777666554 22222344555555665555
Q ss_pred ccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCcc
Q 035522 259 AYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGL 338 (509)
Q Consensus 259 ~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~ 338 (509)
..+... +.+......+|+.+.+... ++......+..+..++.+.+..+... .....|..+..++.+......+.
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCCceE--eehhhcccCCCceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 443221 1111222345555555432 12122234445555555555544322 23334445555555554433221
Q ss_pred CcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCC
Q 035522 339 LPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNL 418 (509)
Q Consensus 339 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l 418 (509)
...+..+.+|+.+.+.++ +.......|.++.+|+.+++.++ ++..-..+|.+|++|+.+.+..+ +...-..+|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 123445555555555433 22222334445555555555432 33333344555555555555443 333333445555
Q ss_pred CcCCeEecccCcCCcCChhhccCCCCCCE
Q 035522 419 THLRQLDLSHNFINGTIPSQLGNIPNISA 447 (509)
Q Consensus 419 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~ 447 (509)
++|+++++..+- . .+...|.++++|+.
T Consensus 366 ~~L~~i~lp~~~-~-~~~~~F~~c~~L~~ 392 (394)
T 4fs7_A 366 INLKKVELPKRL-E-QYRYDFEDTTKFKW 392 (394)
T ss_dssp TTCCEEEEEGGG-G-GGGGGBCTTCEEEE
T ss_pred CCCCEEEECCCC-E-EhhheecCCCCCcE
Confidence 555555554331 1 22334444544443
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.65 E-value=3.6e-16 Score=135.74 Aligned_cols=131 Identities=21% Similarity=0.210 Sum_probs=60.0
Q ss_pred CCCcEEecCCCCCcc-eeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEE
Q 035522 106 PNLITFKISGTGFLS-GRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYL 184 (509)
Q Consensus 106 ~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 184 (509)
++|+.|++++|. +. +.+|..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+.+|..+.++++|++|
T Consensus 24 ~~L~~L~l~~n~-l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 24 AAVRELVLDNCK-SNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TSCSEEECCSCB-CBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred ccCCEEECCCCC-CChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 445555555554 33 34444444455555555555554433 344445555555555555544344444444455555
Q ss_pred ECcCCCCCCCC-cccccCCCCCCEEeccCCcCcccCC---cccCCCCCCcEEECcCCCC
Q 035522 185 MLQGNKLDGLI-PSSIGNLTKLTGLNLSLNKLSGRLP---REVGNLKILELLYLDSNNL 239 (509)
Q Consensus 185 ~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~~n~l 239 (509)
++++|.+++.. +..+..+++|++|++++|.+++..+ ..+..+++|++|++++|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~ 159 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRED 159 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCCh
Confidence 55555444321 1334444444444444444443222 2344444444444444443
No 127
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.65 E-value=5.4e-16 Score=137.66 Aligned_cols=134 Identities=22% Similarity=0.236 Sum_probs=70.6
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccC
Q 035522 350 DSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429 (509)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 429 (509)
+.++++++.++ .+|..+ .+++++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|..+++|++|+|++|
T Consensus 13 ~~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 34555555554 334332 235555555555555 34445555555555555555555444445555555555555555
Q ss_pred cCCcCChhhccCCCCCCEEeCcCCcCcccCCccccCCCeEecccCccccCCCCCCCCCCCCCccCcCCCcCCCCccccC
Q 035522 430 FINGTIPSQLGNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNLELENSTSSENAPPPQAKPFKGNKGKQRKIVTR 508 (509)
Q Consensus 430 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l~~~~~ip~~~~~~l~~l~l~~N~~lc~~~~~~ 508 (509)
.+++..+..|..+++|++|++++|++++..+..+ ..+++++.+++.+||+.|+|.+.|
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~---------------------~~l~~L~~L~L~~N~~~C~c~l~~ 146 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF---------------------NDLSALSHLAIGANPLYCDCNMQW 146 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT---------------------TTCTTCCEEECCSSCEECSGGGHH
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh---------------------hcCccccEEEeCCCCeecCCcCHH
Confidence 5554444455555555555555555543333222 234555666666666666666554
No 128
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.63 E-value=8.8e-16 Score=133.24 Aligned_cols=88 Identities=23% Similarity=0.224 Sum_probs=36.4
Q ss_pred CCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcC-cccccCCCcCCeEecccCcCCcCCh---hhccCCCC
Q 035522 369 YLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIF-PSEIGNLTHLRQLDLSHNFINGTIP---SQLGNIPN 444 (509)
Q Consensus 369 ~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p---~~~~~l~~ 444 (509)
.+++|++|++++|.+++.+|..+..+++|+.|++++|.+++.. +..+..+++|++|++++|.+.+..+ ..+..+++
T Consensus 69 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~ 148 (168)
T 2ell_A 69 KLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQ 148 (168)
T ss_dssp CCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSS
T ss_pred cCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCcc
Confidence 3333444444444443333333333444444444444443221 1334444444444444444443222 24444445
Q ss_pred CCEEeCcCCcCc
Q 035522 445 ISAVDLSKNNLS 456 (509)
Q Consensus 445 L~~L~ls~N~l~ 456 (509)
|++|++++|.+.
T Consensus 149 L~~L~l~~n~~~ 160 (168)
T 2ell_A 149 LTYLDGYDREDQ 160 (168)
T ss_dssp CCEETTEETTSC
T ss_pred CcEecCCCCChh
Confidence 555555444443
No 129
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.62 E-value=3.6e-16 Score=132.77 Aligned_cols=127 Identities=22% Similarity=0.134 Sum_probs=66.5
Q ss_pred CCCCEEEccCCcCC-ccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEe
Q 035522 131 SKLQVLNLSQNHLT-GTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLN 209 (509)
Q Consensus 131 ~~L~~L~L~~~~l~-~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~ 209 (509)
++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+.++++|++|++++|.+++.+|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 34555555555554 44454455555555555555555433 3455555555555555555544455445555555555
Q ss_pred ccCCcCccc-CCcccCCCCCCcEEECcCCCCCCCCc---hhhhCCCCcceeecc
Q 035522 210 LSLNKLSGR-LPREVGNLKILELLYLDSNNLTGPIP---STLYHLNPLIEWYLA 259 (509)
Q Consensus 210 l~~n~l~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~~~~L~~L~l~ 259 (509)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 555555532 22445555555555555555554333 345555556655553
No 130
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=1.3e-15 Score=129.36 Aligned_cols=128 Identities=20% Similarity=0.219 Sum_probs=86.3
Q ss_pred CCCCcEEecCCCCCcc-eeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCE
Q 035522 105 FPNLITFKISGTGFLS-GRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDY 183 (509)
Q Consensus 105 l~~L~~L~l~~~~~~~-~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~ 183 (509)
.++++.|++++|. +. +.+|..+..+++|++|++++|.+.+. ..++.+++|++|++++|.+++.+|..+..+++|++
T Consensus 16 ~~~l~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 16 PSDVKELVLDNSR-SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp GGGCSEEECTTCB-CBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CccCeEEEccCCc-CChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3567777777776 54 56666667777777777777777644 55667777777777777777556666666777777
Q ss_pred EECcCCCCCCC-CcccccCCCCCCEEeccCCcCcccCC---cccCCCCCCcEEECc
Q 035522 184 LMLQGNKLDGL-IPSSIGNLTKLTGLNLSLNKLSGRLP---REVGNLKILELLYLD 235 (509)
Q Consensus 184 L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~~~~~---~~l~~l~~L~~L~l~ 235 (509)
|++++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|+++
T Consensus 93 L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 77777777653 23566777777777777777765444 356667777777665
No 131
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=4.8e-14 Score=139.53 Aligned_cols=264 Identities=10% Similarity=0.060 Sum_probs=161.6
Q ss_pred CCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEec
Q 035522 131 SKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNL 210 (509)
Q Consensus 131 ~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 210 (509)
..++.+.+.+ .++.+....|.++ +|+.+++..+ ++.....+|.++ +|+.+.+.. .+..+.+..|.++++|+.+++
T Consensus 113 ~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l 187 (401)
T 4fdw_A 113 KGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKADL 187 (401)
T ss_dssp SSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEEEC
T ss_pred CCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCeeec
Confidence 4555555553 3443444455553 5666666544 443334445443 466666654 444444455666666666666
Q ss_pred cCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCc
Q 035522 211 SLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGP 290 (509)
Q Consensus 211 ~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~ 290 (509)
.+|.++......|. ..+|+.+.+..+ +...-...|.++++|+.+.+..+ ++.....+|.+ .+|+.+.+. +.++..
T Consensus 188 ~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I 262 (401)
T 4fdw_A 188 SKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNI 262 (401)
T ss_dssp TTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEE
T ss_pred CCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEE
Confidence 66666544444444 456666666533 44333445666666666666543 33333345555 567777774 334444
Q ss_pred chhhhcCCCCCCEEECcCCCCC-----CCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCcc
Q 035522 291 ISSTIGYLNLLEILDLSHNRLD-----GPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPP 365 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 365 (509)
-..+|.++++|+.+++.++.+. ...+..|..|++|+.+.+.+ .++......|.++++|+.+.+..+ ++.....
T Consensus 263 ~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~ 340 (401)
T 4fdw_A 263 ASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFS 340 (401)
T ss_dssp CTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTT
T ss_pred ChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHH
Confidence 4567777788888887776553 23455777888888888874 466556667888888888888654 5444556
Q ss_pred ccCCCCCCCEEECcCCcCcccCcccccCCc-cCceeeeecccC
Q 035522 366 TIGYLTNLTSLNLGYNQLSSSIPPELMNCS-QLQNLVLSHNTL 407 (509)
Q Consensus 366 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~-~L~~L~L~~n~l 407 (509)
.|.++ +|+.+.+.+|.........|..++ .++.|++..+.+
T Consensus 341 aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~ 382 (401)
T 4fdw_A 341 AFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESV 382 (401)
T ss_dssp SSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGH
T ss_pred hCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHH
Confidence 77777 888888888887765566666664 678888877654
No 132
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.61 E-value=5.1e-14 Score=139.31 Aligned_cols=267 Identities=10% Similarity=0.052 Sum_probs=197.4
Q ss_pred CCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEE
Q 035522 153 SSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELL 232 (509)
Q Consensus 153 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L 232 (509)
.+..++.+.+.++ ++......|.++ +|+.+.+..+ ++.+...+|.++ +|+.+.+.. .+....+.+|.++++|+.+
T Consensus 111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l 185 (401)
T 4fdw_A 111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA 185 (401)
T ss_dssp ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence 3577888888653 443455567764 7999998766 665666677774 699999885 5665667788899999999
Q ss_pred ECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCC
Q 035522 233 YLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLD 312 (509)
Q Consensus 233 ~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~ 312 (509)
++..|.++. ++.......+|+.+.+..+ +......+|.++++|+.+.+..+ ++..-..+|.+ .+|+.+.+.+ .++
T Consensus 186 ~l~~n~l~~-I~~~aF~~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~ 260 (401)
T 4fdw_A 186 DLSKTKITK-LPASTFVYAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT 260 (401)
T ss_dssp ECTTSCCSE-ECTTTTTTCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred ecCCCcceE-echhhEeecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence 999888874 4444344688999988743 55555677888899999999865 44444556666 7899999954 455
Q ss_pred CCCccccCCCCCcCeeeCccccCC-----ccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccC
Q 035522 313 GPIPSTIGNLTNLTSLVLSSNQLS-----GLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSI 387 (509)
Q Consensus 313 ~~~~~~~~~l~~L~~L~ls~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 387 (509)
......|..|++|+.+.+.++.+. ......|.++++|+.+.+.+ .+.......|.++.+|+.+.+..+ ++..-
T Consensus 261 ~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~ 338 (401)
T 4fdw_A 261 NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQIN 338 (401)
T ss_dssp EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEEC
T ss_pred EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEc
Confidence 455678888999999999887654 34556788899999999984 465555667888899999999655 66566
Q ss_pred cccccCCccCceeeeecccCCCcCcccccCCC-cCCeEecccCcCC
Q 035522 388 PPELMNCSQLQNLVLSHNTLSGIFPSEIGNLT-HLRQLDLSHNFIN 432 (509)
Q Consensus 388 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~ 432 (509)
..+|.+| +|+.+++.+|.+....+..|.+++ +++.|++..+.+.
T Consensus 339 ~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 339 FSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp TTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred HHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 6788888 899999999988766666777774 7888888877643
No 133
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.59 E-value=1.1e-13 Score=137.45 Aligned_cols=314 Identities=11% Similarity=-0.024 Sum_probs=220.0
Q ss_pred CchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCC
Q 035522 123 IPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNL 202 (509)
Q Consensus 123 ~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 202 (509)
-..+|..+.+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++......|.++.+|+.+.+..+ +.......|.++
T Consensus 63 g~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~ 139 (394)
T 4fs7_A 63 GYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGC 139 (394)
T ss_dssp CTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTC
T ss_pred HHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecc
Confidence 345688899999999975 466566778999999999999765 44344567888888888777654 343444566666
Q ss_pred CCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeec
Q 035522 203 TKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLL 282 (509)
Q Consensus 203 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L 282 (509)
..++....... ......+|.++++|+.+.+..+. ...-...|..+.+|+.+.+..+ ++......+.++..|+.+.+
T Consensus 140 ~~~~~~~~~~~--~~i~~~aF~~c~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~ 215 (394)
T 4fs7_A 140 DFKEITIPEGV--TVIGDEAFATCESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEF 215 (394)
T ss_dssp CCSEEECCTTC--CEECTTTTTTCTTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCC
T ss_pred cccccccCccc--cccchhhhcccCCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeec
Confidence 54443333222 22345678899999999997654 3234456778888999988765 44344467788888888888
Q ss_pred ccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCC
Q 035522 283 HRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGP 362 (509)
Q Consensus 283 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 362 (509)
..+... +........+|+.+.+.... +......+..+..++.+.+..+... .....|..+..++.+......+.
T Consensus 216 ~~~~~~--i~~~~~~~~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~-- 289 (394)
T 4fs7_A 216 PNSLYY--LGDFALSKTGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP-- 289 (394)
T ss_dssp CTTCCE--ECTTTTTTCCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC--
T ss_pred CCCceE--eehhhcccCCCceEEECCCc-eecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec--
Confidence 765432 22334456788888886543 2234456778888999888776432 44556778888888887766443
Q ss_pred CccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCC
Q 035522 363 IPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNI 442 (509)
Q Consensus 363 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l 442 (509)
...+..+.+|+.+.+.++ +...-..+|.+|++|+.+++.++ +...-..+|.+|++|+.+.+..+ ++......|.+|
T Consensus 290 -~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C 365 (394)
T 4fs7_A 290 -EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGC 365 (394)
T ss_dssp -TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTC
T ss_pred -cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCC
Confidence 235677889999998765 55455667888999999999654 55555678889999999999876 664556788899
Q ss_pred CCCCEEeCcCC
Q 035522 443 PNISAVDLSKN 453 (509)
Q Consensus 443 ~~L~~L~ls~N 453 (509)
++|+.+++..+
T Consensus 366 ~~L~~i~lp~~ 376 (394)
T 4fs7_A 366 INLKKVELPKR 376 (394)
T ss_dssp TTCCEEEEEGG
T ss_pred CCCCEEEECCC
Confidence 99999988754
No 134
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.58 E-value=2e-14 Score=127.52 Aligned_cols=127 Identities=27% Similarity=0.338 Sum_probs=82.1
Q ss_pred cEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcC
Q 035522 109 ITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188 (509)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 188 (509)
+.++++++. +. .+|..+. ++|++|++++|.++ .+|..|.++++|++|++++|.+++..+..|.++++|++|++++
T Consensus 13 ~~l~~~~~~-l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~ 87 (193)
T 2wfh_A 13 TVVRCSNKG-LK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY 87 (193)
T ss_dssp TEEECTTSC-CS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCC-CC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence 456666666 33 4454432 46777777777766 5566666777777777777777655555666677777777777
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCC
Q 035522 189 NKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 189 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~ 240 (509)
|.+++..+..|..+++|++|++++|.++...+..|..+++|++|++++|.+.
T Consensus 88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEE
T ss_pred CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCee
Confidence 7766666666666677777777776666554445666666666666666554
No 135
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=2.2e-14 Score=125.52 Aligned_cols=114 Identities=23% Similarity=0.246 Sum_probs=66.5
Q ss_pred CCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEec
Q 035522 347 KYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDL 426 (509)
Q Consensus 347 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 426 (509)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l 107 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELAL 107 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEEC
Confidence 35555555555555444444455566666666666665444444556666666666666666554445566666666666
Q ss_pred ccCcCCcCChhhccCCCCCCEEeCcCCcCcccCC
Q 035522 427 SHNFINGTIPSQLGNIPNISAVDLSKNNLSGVVP 460 (509)
Q Consensus 427 ~~n~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~~ 460 (509)
++|.+.+..+..+..+++|++|++++|++++..|
T Consensus 108 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 108 DTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 6666664444445566666666666666665443
No 136
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.57 E-value=4.2e-14 Score=123.72 Aligned_cols=129 Identities=26% Similarity=0.300 Sum_probs=69.0
Q ss_pred cEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcC
Q 035522 109 ITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQG 188 (509)
Q Consensus 109 ~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~ 188 (509)
+.++++++. +. .+|..+ .++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+.++++|++|++++
T Consensus 10 ~~l~~~~~~-l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 10 TEIRCNSKG-LT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TEEECCSSC-CS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CEEEecCCC-Cc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 455555555 22 233322 24566666666666544444455566666666666665544444455555666666666
Q ss_pred CCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCC
Q 035522 189 NKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTG 241 (509)
Q Consensus 189 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 241 (509)
|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeec
Confidence 65555444445555555555555555554434344555555555555555543
No 137
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2.7e-14 Score=124.79 Aligned_cols=105 Identities=18% Similarity=0.237 Sum_probs=56.0
Q ss_pred CCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcc--cccCCCcCCeEe
Q 035522 348 YLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPS--EIGNLTHLRQLD 425 (509)
Q Consensus 348 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~--~~~~l~~L~~L~ 425 (509)
+|+.|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++|++++|.+. .+|. .+..+++|++|+
T Consensus 43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~ 119 (176)
T 1a9n_A 43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC 119 (176)
T ss_dssp CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence 444444444444432 33445555555555555555433333355555666666666554 2333 455566666666
Q ss_pred cccCcCCcCChhh----ccCCCCCCEEeCcCCcCc
Q 035522 426 LSHNFINGTIPSQ----LGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 426 L~~n~l~~~~p~~----~~~l~~L~~L~ls~N~l~ 456 (509)
+++|.+. .+|.. +..+++|++||+++|.+.
T Consensus 120 l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 120 ILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred ecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 6666665 33432 556666666666666543
No 138
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=6.3e-14 Score=122.42 Aligned_cols=108 Identities=23% Similarity=0.248 Sum_probs=45.7
Q ss_pred cCCCCCCEEEccCCcCCccCCccccCC-CCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCC
Q 035522 128 GALSKLQVLNLSQNHLTGTIPSEIGSS-RNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLT 206 (509)
Q Consensus 128 ~~l~~L~~L~L~~~~l~~~~~~~l~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 206 (509)
..+.+|++|++++|.+. .++. +..+ ++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 33444445555444444 2222 2222 2444444444444422 2344444444444444444433222234444444
Q ss_pred EEeccCCcCcccCCc--ccCCCCCCcEEECcCCCCC
Q 035522 207 GLNLSLNKLSGRLPR--EVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 207 ~L~l~~n~l~~~~~~--~l~~l~~L~~L~l~~n~l~ 240 (509)
+|++++|.+. .+|. .+..+++|++|++++|.++
T Consensus 92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~ 126 (176)
T 1a9n_A 92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT 126 (176)
T ss_dssp EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG
T ss_pred EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC
Confidence 4444444443 2222 3444444444444444443
No 139
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.45 E-value=3.5e-16 Score=139.67 Aligned_cols=112 Identities=23% Similarity=0.303 Sum_probs=53.7
Q ss_pred ccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccC
Q 035522 318 TIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQL 397 (509)
Q Consensus 318 ~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L 397 (509)
.+..+++|++|++++|.+++ +| .+..+++|+.|++++|.+. .+|..+..+++|++|++++|.+++ ++ .+..+++|
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L 117 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNL 117 (198)
T ss_dssp HHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHS
T ss_pred HHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCC
Confidence 44444455555555554443 23 3444445555555555444 334333344455555555555553 22 34445555
Q ss_pred ceeeeecccCCCcCc-ccccCCCcCCeEecccCcCCcC
Q 035522 398 QNLVLSHNTLSGIFP-SEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 398 ~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
+.|++++|.+.+..+ ..+..+++|++|++++|.+.+.
T Consensus 118 ~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~ 155 (198)
T 1ds9_A 118 RVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYND 155 (198)
T ss_dssp SEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHH
T ss_pred CEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccc
Confidence 555555555543211 2345555555555555555443
No 140
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.43 E-value=2.2e-15 Score=134.50 Aligned_cols=151 Identities=23% Similarity=0.282 Sum_probs=121.7
Q ss_pred CCCCcCeeeCccccCCccCcc------cccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCC
Q 035522 321 NLTNLTSLVLSSNQLSGLLPR------EVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNC 394 (509)
Q Consensus 321 ~l~~L~~L~ls~n~l~~~~~~------~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 394 (509)
....++.++++.+.+.+..|. .+..+++|++|++++|.+.+ +| .+..+++|++|++++|.++ .+|..+..+
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~ 92 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVA 92 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHH
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcC
Confidence 345566666666666665554 78889999999999999986 66 7888999999999999999 677777778
Q ss_pred ccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCCh-hhccCCCCCCEEeCcCCcCcccCCc------------
Q 035522 395 SQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIP-SQLGNIPNISAVDLSKNNLSGVVPA------------ 461 (509)
Q Consensus 395 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~~~------------ 461 (509)
++|++|++++|.+.+ +| .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|++++..|.
T Consensus 93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~ 170 (198)
T 1ds9_A 93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV 170 (198)
T ss_dssp HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence 999999999999986 45 68889999999999999985332 4788999999999999999877543
Q ss_pred -cccCCCeEecccCcccc
Q 035522 462 -SVRRIPKLIVSENNLEL 478 (509)
Q Consensus 462 -~~~~l~~L~ls~N~l~~ 478 (509)
.++++++|| +|.++.
T Consensus 171 ~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 171 KRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp HHCSSCSEEC--CGGGTT
T ss_pred HhCCCcEEEC--CcccCH
Confidence 355666776 666654
No 141
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.42 E-value=4.2e-11 Score=118.68 Aligned_cols=329 Identities=9% Similarity=0.068 Sum_probs=140.0
Q ss_pred CCccCCCC-CCcEEecCCCCCcceeCchhccCCCCCCEEEccCCc---CCccCCccccCCCCCcEEeccCCcCCCcCCcc
Q 035522 99 QFNFTCFP-NLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNH---LTGTIPSEIGSSRNLFQLDLSINILNGSIPLE 174 (509)
Q Consensus 99 ~~~l~~l~-~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~---l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~ 174 (509)
..+|.+++ .|+.+.+..+ ++..-..+|.+|.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++......
T Consensus 56 ~~aF~~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~a 132 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEA 132 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTT
T ss_pred HhhccCCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhh
Confidence 44565553 4666666543 333334556667777777665442 44344455666666666655433 22233344
Q ss_pred CCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcc
Q 035522 175 IGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLI 254 (509)
Q Consensus 175 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~ 254 (509)
|.++.+|+.+.+..+ +.......|..+.+|+.+.+..+ +...-..+|.+ .+|+.+.+..+... .-...+..+..+.
T Consensus 133 F~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~~-i~~~af~~c~~l~ 208 (394)
T 4gt6_A 133 FHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVTR-IGTNAFSECFALS 208 (394)
T ss_dssp TTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCCE-ECTTTTTTCTTCC
T ss_pred hhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCcccc-cccchhhhccccc
Confidence 556666666666432 22233344555666666655443 22222233332 34555554432211 1122333333333
Q ss_pred eeecccCcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCcccc
Q 035522 255 EWYLAYNNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQ 334 (509)
Q Consensus 255 ~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~ 334 (509)
............ ...+ ...+.........+.....+..+.+... ++......|..+..|+.+.+.++.
T Consensus 209 ~~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c~~L~~i~lp~~~ 276 (394)
T 4gt6_A 209 TITSDSESYPAI-DNVL----------YEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSCAYLASVKMPDSV 276 (394)
T ss_dssp EEEECCSSSCBS-SSCE----------EEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTCSSCCEEECCTTC
T ss_pred eecccccccccc-ccee----------ecccccccccccccccccccceEEcCCc-ceEcccceeeecccccEEeccccc
Confidence 333322211100 0000 0000000000000111122333333221 111222345555556666554432
Q ss_pred CCccCcccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCccc
Q 035522 335 LSGLLPREVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSE 414 (509)
Q Consensus 335 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 414 (509)
. ......|.+++.|+.+.+.. .+.......|.++.+|+.+.+..+ ++..-..+|.+|++|+.+.+..+ ++..-..+
T Consensus 277 ~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~a 352 (394)
T 4gt6_A 277 V-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESA 352 (394)
T ss_dssp C-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGG
T ss_pred c-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhH
Confidence 2 12333455555566555542 222223334555556666666543 33333445556666666666433 33333445
Q ss_pred ccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCcCC
Q 035522 415 IGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKN 453 (509)
Q Consensus 415 ~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N 453 (509)
|.+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 353 F~~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 353 FSNCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp GTTCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred hhCCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 666666666666555432 123445555555555444
No 142
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.41 E-value=2e-12 Score=112.05 Aligned_cols=106 Identities=27% Similarity=0.261 Sum_probs=66.8
Q ss_pred CCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccC
Q 035522 133 LQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSL 212 (509)
Q Consensus 133 L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 212 (509)
.++++++++.+. .+|..+ .++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 456666666665 345444 25666666666666655566666666666666666666655555566666677777766
Q ss_pred CcCcccCCcccCCCCCCcEEECcCCCCCC
Q 035522 213 NKLSGRLPREVGNLKILELLYLDSNNLTG 241 (509)
Q Consensus 213 n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 241 (509)
|++++..+..|..+++|++|++++|.+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 66665555556666677777777666653
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.40 E-value=2e-12 Score=112.01 Aligned_cols=106 Identities=25% Similarity=0.288 Sum_probs=66.5
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccC
Q 035522 350 DSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429 (509)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 429 (509)
+.+++++|.++ .+|..+ .++|++|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|
T Consensus 12 ~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 12 TTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 45555555555 244433 256666666666666555666666666666666666666555555666677777777777
Q ss_pred cCCcCChhhccCCCCCCEEeCcCCcCccc
Q 035522 430 FINGTIPSQLGNIPNISAVDLSKNNLSGV 458 (509)
Q Consensus 430 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 458 (509)
++.+..+..+..+++|++|++++|+++..
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred ccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence 77655555566677777777777766543
No 144
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.39 E-value=4.6e-11 Score=118.40 Aligned_cols=331 Identities=8% Similarity=0.076 Sum_probs=190.6
Q ss_pred chhccCCC-CCCEEEccCCcCCccCCccccCCCCCcEEeccCCc---CCCcCCccCCCCCCCCEEECcCCCCCCCCcccc
Q 035522 124 PSEIGALS-KLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINI---LNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSI 199 (509)
Q Consensus 124 ~~~~~~l~-~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~---~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l 199 (509)
..+|.++. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+. ++.....+|.++.+|+.+.+..+ ++......|
T Consensus 56 ~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF 133 (394)
T 4gt6_A 56 DRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAF 133 (394)
T ss_dssp TTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTT
T ss_pred HhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhh
Confidence 34576664 5888888754 665667788888888888887653 44334456777777777766543 343444567
Q ss_pred cCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcce
Q 035522 200 GNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKI 279 (509)
Q Consensus 200 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~ 279 (509)
..+.+|+.+.+..+ +.......|..+.+|+.+.+..+ +. .+.........|+.+.+..+.. ......+..+.+++.
T Consensus 134 ~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~-~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~ 209 (394)
T 4gt6_A 134 HHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VT-AIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALST 209 (394)
T ss_dssp TTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CC-EECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCE
T ss_pred hhhcccccccccce-eeeecccceecccccccccccce-ee-EeccccccccceeEEEECCccc-ccccchhhhccccce
Confidence 77777877777643 33244456677777777777544 22 1222222234455555543221 122233444444444
Q ss_pred eecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcC
Q 035522 280 LLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNL 359 (509)
Q Consensus 280 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l 359 (509)
........... ...+ ...+.........+.....+..+.+.. .+.......|.++..|+.+.+.++..
T Consensus 210 ~~~~~~~~~~~-~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~ 277 (394)
T 4gt6_A 210 ITSDSESYPAI-DNVL----------YEKSANGDYALIRYPSQREDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV 277 (394)
T ss_dssp EEECCSSSCBS-SSCE----------EEECTTSCEEEEECCTTCCCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC
T ss_pred ecccccccccc-ccee----------ecccccccccccccccccccceEEcCC-cceEcccceeeecccccEEecccccc
Confidence 44333222100 0000 000000000000111223444455433 23333445788899999999976543
Q ss_pred CCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhc
Q 035522 360 IGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQL 439 (509)
Q Consensus 360 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~ 439 (509)
. .....+.++++|+.+.+. +.++......|.+|.+|+.+.+.++ ++..-..+|.+|.+|+++.+..+ ++......|
T Consensus 278 ~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF 353 (394)
T 4gt6_A 278 S-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAF 353 (394)
T ss_dssp E-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGG
T ss_pred e-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHh
Confidence 2 445677889999999996 4555566678999999999999764 55555678999999999999765 664566789
Q ss_pred cCCCCCCEEeCcCCcCcccCCccccCCCeEecccCcc
Q 035522 440 GNIPNISAVDLSKNNLSGVVPASVRRIPKLIVSENNL 476 (509)
Q Consensus 440 ~~l~~L~~L~ls~N~l~~~~~~~~~~l~~L~ls~N~l 476 (509)
.+|++|+.+++.++.....--.....|+.+.+..|.+
T Consensus 354 ~~C~~L~~i~~~~~~~~~~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 354 SNCTALNNIEYSGSRSQWNAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp TTCTTCCEEEESSCHHHHHTCBCCCCC----------
T ss_pred hCCCCCCEEEECCceeehhhhhccCCCCEEEeCCCCE
Confidence 9999999999998854322222334566666655543
No 145
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.39 E-value=3.2e-12 Score=111.14 Aligned_cols=104 Identities=28% Similarity=0.333 Sum_probs=63.9
Q ss_pred CEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCC
Q 035522 134 QVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN 213 (509)
Q Consensus 134 ~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (509)
+.++++++.+. .+|..+. ++|++|++++|.+++..|..|.++++|++|++++|++++..+..|.++++|++|++++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 45666666554 4454442 56666666666666555556666666666666666666554444566666666666666
Q ss_pred cCcccCCcccCCCCCCcEEECcCCCCC
Q 035522 214 KLSGRLPREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 214 ~l~~~~~~~l~~l~~L~~L~l~~n~l~ 240 (509)
.+++..+..|..+++|++|++++|.+.
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ccceeCHHHhccccCCCEEEeCCCCcc
Confidence 666544444666666777777666665
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.37 E-value=4e-12 Score=110.53 Aligned_cols=105 Identities=25% Similarity=0.308 Sum_probs=59.1
Q ss_pred CEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccC
Q 035522 350 DSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429 (509)
Q Consensus 350 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 429 (509)
+.+++++|.+. .+|..+. ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 34555555543 3444332 45556666666665555555555666666666666665444444556666666666666
Q ss_pred cCCcCChhhccCCCCCCEEeCcCCcCcc
Q 035522 430 FINGTIPSQLGNIPNISAVDLSKNNLSG 457 (509)
Q Consensus 430 ~l~~~~p~~~~~l~~L~~L~ls~N~l~~ 457 (509)
++.+..+..+..+++|++|++++|++..
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 6664444446666666666666666653
No 147
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.23 E-value=2e-13 Score=133.68 Aligned_cols=160 Identities=20% Similarity=0.179 Sum_probs=73.8
Q ss_pred CCcceeecccccccCcchhhh----c-CCCCCCEEECcCCCCCCCCcccc-CCCCCcCeeeCccccCCccCcccc-----
Q 035522 275 KNLKILLLHRNNLTGPISSTI----G-YLNLLEILDLSHNRLDGPIPSTI-GNLTNLTSLVLSSNQLSGLLPREV----- 343 (509)
Q Consensus 275 ~~L~~L~L~~n~~~~~~~~~~----~-~~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~ls~n~l~~~~~~~~----- 343 (509)
+.|+.|++++|.++......+ . ..+.|++|++++|.+++.....+ ..+++|++|++++|.++......+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 345556666555543222221 1 12456666666665543211111 123455666666665543322222
Q ss_pred cCCCCCCEEEcCCCcCCCC----CccccCCCCCCCEEECcCCcCccc----CcccccCCccCceeeeecccCCCc----C
Q 035522 344 GNLKYLDSRSLDGNNLIGP----IPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGI----F 411 (509)
Q Consensus 344 ~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~ 411 (509)
...+.|+.|++++|.++.. ++..+...++|++|+|++|.+++. +...+..+++|+.|+|++|.+++. +
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l 231 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALAL 231 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHH
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHH
Confidence 2344555666665555421 222234455566666666655432 123334445555555555555432 2
Q ss_pred cccccCCCcCCeEecccCcCCcC
Q 035522 412 PSEIGNLTHLRQLDLSHNFINGT 434 (509)
Q Consensus 412 ~~~~~~l~~L~~L~L~~n~l~~~ 434 (509)
...+..+++|++|+|++|.+++.
T Consensus 232 ~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 232 ARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp HHHHHHCSSCCEEECTTSSCCHH
T ss_pred HHHHHhCCCCCEEeccCCCCCHH
Confidence 22233345555555555555543
No 148
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.22 E-value=2.8e-13 Score=132.71 Aligned_cols=166 Identities=20% Similarity=0.204 Sum_probs=121.9
Q ss_pred CCCCCEEECcCCCCCCCCccc----cC-CCCCcCeeeCccccCCccCcccc-cCCCCCCEEEcCCCcCCCCCcccc----
Q 035522 298 LNLLEILDLSHNRLDGPIPST----IG-NLTNLTSLVLSSNQLSGLLPREV-GNLKYLDSRSLDGNNLIGPIPPTI---- 367 (509)
Q Consensus 298 ~~~L~~L~l~~n~l~~~~~~~----~~-~l~~L~~L~ls~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~~~---- 367 (509)
.+.|++|++++|.++...... +. ..++|++|++++|.++......+ ..+++|+.|++++|.++......+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 467999999999987533322 22 33799999999999875433322 345689999999998875433333
Q ss_pred -CCCCCCCEEECcCCcCccc----CcccccCCccCceeeeecccCCCc----CcccccCCCcCCeEecccCcCCcC----
Q 035522 368 -GYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGI----FPSEIGNLTHLRQLDLSHNFINGT---- 434 (509)
Q Consensus 368 -~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---- 434 (509)
...++|++|++++|.+++. ++..+..+++|++|+|++|.+++. ++..+..+++|++|+|++|.+++.
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~ 230 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALA 230 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHH
T ss_pred HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHH
Confidence 3468899999999998752 344456788899999999998753 345667788999999999999854
Q ss_pred ChhhccCCCCCCEEeCcCCcCcccCCccc
Q 035522 435 IPSQLGNIPNISAVDLSKNNLSGVVPASV 463 (509)
Q Consensus 435 ~p~~~~~l~~L~~L~ls~N~l~~~~~~~~ 463 (509)
++..+..+++|++|++++|.|++.....+
T Consensus 231 l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 231 LARAAREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHHHHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHHHHHhCCCCCEEeccCCCCCHHHHHHH
Confidence 33455567899999999999986544433
No 149
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.21 E-value=2.3e-11 Score=118.49 Aligned_cols=103 Identities=22% Similarity=0.311 Sum_probs=75.4
Q ss_pred CEEECcCC-cCcccCcccccCCccCceeeeec-ccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCCEEeCc
Q 035522 374 TSLNLGYN-QLSSSIPPELMNCSQLQNLVLSH-NTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNISAVDLS 451 (509)
Q Consensus 374 ~~L~L~~n-~l~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls 451 (509)
..++++++ +++ .+|. +..+++|+.|+|++ |.+.+..+..|..+++|++|+|++|++.+..|..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35677776 677 4666 77777888888875 78877666778888888888888888887777777888888888888
Q ss_pred CCcCcccCCccccC--CCeEecccCcccc
Q 035522 452 KNNLSGVVPASVRR--IPKLIVSENNLEL 478 (509)
Q Consensus 452 ~N~l~~~~~~~~~~--l~~L~ls~N~l~~ 478 (509)
+|+|++..+..+.. |++|++++|++..
T Consensus 89 ~N~l~~~~~~~~~~~~L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLSLQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCCCCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCCceEEEeeCCCccC
Confidence 88887665554433 5577777777665
No 150
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.18 E-value=6e-09 Score=102.54 Aligned_cols=302 Identities=11% Similarity=0.077 Sum_probs=130.1
Q ss_pred ccCCCCCCcEEecCCCCCcceeCchhccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCC
Q 035522 101 NFTCFPNLITFKISGTGFLSGRIPSEIGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKD 180 (509)
Q Consensus 101 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 180 (509)
.+....+|+.+.+... ++..-..+|..|.+|+.+++..+ ++.+...+|.++ +|+.+.+..+ +.......|.. .+
T Consensus 41 ~~~~~~~i~~v~ip~~--vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~ 114 (379)
T 4h09_A 41 WYKDRDRISEVRVNSG--ITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TD 114 (379)
T ss_dssp TGGGGGGCSEEEECTT--EEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CC
T ss_pred ccccccCCEEEEeCCC--ccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CC
Confidence 3445556667766543 33333445777777777777543 444445556555 4555555433 22122223333 35
Q ss_pred CCEEECcCCCCCCCCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeeccc
Q 035522 181 LDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAY 260 (509)
Q Consensus 181 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~ 260 (509)
|+.+.+..+ +.......|.+. +++.+.+..+ ++......+..+.+++.+.+..+........... .
T Consensus 115 L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~-----------~ 180 (379)
T 4h09_A 115 LDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL-----------Y 180 (379)
T ss_dssp CSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE-----------E
T ss_pred cccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee-----------c
Confidence 666666543 222222333333 4444444332 2223334455555555555544322100000000 0
Q ss_pred CcCCCCCchhccCCCCcceeecccccccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCc
Q 035522 261 NNLVGPLPKEVGNMKNLKILLLHRNNLTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLP 340 (509)
Q Consensus 261 n~~~~~~~~~l~~~~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~ 340 (509)
+. .......+.....+..+.+.... .......+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++....
T Consensus 181 ~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~ 256 (379)
T 4h09_A 181 NK-NKTILESYPAAKTGTEFTIPSTV-KTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGS 256 (379)
T ss_dssp ET-TSSEEEECCTTCCCSEEECCTTC-CEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECT
T ss_pred cc-ccceeccccccccccccccccce-eEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCc
Confidence 00 00011112222333333332221 1112233444555555555433 12122334445555555555443 332333
Q ss_pred ccccCCCCCCEEEcCCCcCCCCCccccCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCc
Q 035522 341 REVGNLKYLDSRSLDGNNLIGPIPPTIGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTH 420 (509)
Q Consensus 341 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 420 (509)
..|.++..|+.+.+..+ +.......|.++.+|+.+.+.++.++..-..+|.+|.+|+.+.+..+ ++.+-..+|.+|++
T Consensus 257 ~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~ 334 (379)
T 4h09_A 257 FLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKA 334 (379)
T ss_dssp TTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred cccceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCC
Confidence 34445555555555432 22222234444555555555555444333444555555555555432 33233344555555
Q ss_pred CCeEeccc
Q 035522 421 LRQLDLSH 428 (509)
Q Consensus 421 L~~L~L~~ 428 (509)
|+++.+..
T Consensus 335 L~~i~ip~ 342 (379)
T 4h09_A 335 LSTISYPK 342 (379)
T ss_dssp CCCCCCCT
T ss_pred CCEEEECC
Confidence 55555543
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.14 E-value=1.7e-10 Score=112.28 Aligned_cols=102 Identities=25% Similarity=0.287 Sum_probs=54.1
Q ss_pred EEccCC-cCCccCCccccCCCCCcEEeccC-CcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCCEEeccCC
Q 035522 136 LNLSQN-HLTGTIPSEIGSSRNLFQLDLSI-NILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLTGLNLSLN 213 (509)
Q Consensus 136 L~L~~~-~l~~~~~~~l~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 213 (509)
++++++ .++ .+|. +..+++|++|+|++ |.+.+..+..|.++++|++|+|++|++++..|..|.++++|++|+|++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 344444 444 3444 55555555555553 5555444445555555555555555555555555555555555555555
Q ss_pred cCcccCCcccCCCCCCcEEECcCCCCC
Q 035522 214 KLSGRLPREVGNLKILELLYLDSNNLT 240 (509)
Q Consensus 214 ~l~~~~~~~l~~l~~L~~L~l~~n~l~ 240 (509)
++++..+..+..++ |+.|++.+|.+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~ 116 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLH 116 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCcc
Confidence 55544333344333 666666665554
No 152
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=99.09 E-value=1.5e-08 Score=99.67 Aligned_cols=312 Identities=12% Similarity=0.067 Sum_probs=186.2
Q ss_pred ccCCCCCCEEEccCCcCCccCCccccCCCCCcEEeccCCcCCCcCCccCCCCCCCCEEECcCCCCCCCCcccccCCCCCC
Q 035522 127 IGALSKLQVLNLSQNHLTGTIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLKDLDYLMLQGNKLDGLIPSSIGNLTKLT 206 (509)
Q Consensus 127 ~~~l~~L~~L~L~~~~l~~~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 206 (509)
+....+|+.+.+.. .++.+...+|.++.+|+.+++..+ ++.....+|.++ +|+.+.+..+ +.......|.. .+|+
T Consensus 42 ~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~~I~~~aF~~-~~L~ 116 (379)
T 4h09_A 42 YKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VKKFGDYVFQG-TDLD 116 (379)
T ss_dssp GGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CCEECTTTTTT-CCCS
T ss_pred cccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-eeEeccceecc-CCcc
Confidence 45556788888864 455556677888888888888654 443444556665 5777766543 33333344544 3677
Q ss_pred EEeccCCcCcccCCcccCCCCCCcEEECcCCCCCCCCchhhhCCCCcceeecccCcCCCCCchhccCCCCcceeeccccc
Q 035522 207 GLNLSLNKLSGRLPREVGNLKILELLYLDSNNLTGPIPSTLYHLNPLIEWYLAYNNLVGPLPKEVGNMKNLKILLLHRNN 286 (509)
Q Consensus 207 ~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~L~~n~ 286 (509)
.+.+..+- .......|.+. +++.+.+..+ ++..-...+..+..++.+.+..+......... ...+.
T Consensus 117 ~i~lp~~~-~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~-----------~~~~~ 182 (379)
T 4h09_A 117 DFEFPGAT-TEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENY-----------VLYNK 182 (379)
T ss_dssp EEECCTTC-CEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETT-----------EEEET
T ss_pred cccCCCcc-ccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeecccc-----------eeccc
Confidence 77776542 22223334433 3444443322 12122233444444444444332211000000 00000
Q ss_pred ccCcchhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCcccccCCCCCCEEEcCCCcCCCCCccc
Q 035522 287 LTGPISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVGNLKYLDSRSLDGNNLIGPIPPT 366 (509)
Q Consensus 287 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 366 (509)
.......+.....+..+.+...... .....+..+.+++.+.+..+ +.......+.++..|+.+.+..+ ++......
T Consensus 183 -~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a 258 (379)
T 4h09_A 183 -NKTILESYPAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL 258 (379)
T ss_dssp -TSSEEEECCTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTT
T ss_pred -ccceeccccccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccc
Confidence 0112223445566666666554322 33445667788888888654 33344556778889999998765 44344567
Q ss_pred cCCCCCCCEEECcCCcCcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccCcCCcCChhhccCCCCCC
Q 035522 367 IGYLTNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHNFINGTIPSQLGNIPNIS 446 (509)
Q Consensus 367 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 446 (509)
+..+.+|+.+.+..+ +.......|..|++|+.+.+.++.+...-...|.+|.+|+.+.|..+ ++......|.+|++|+
T Consensus 259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~ 336 (379)
T 4h09_A 259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS 336 (379)
T ss_dssp TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence 778889999998654 55455567888999999999988887666778999999999999765 5545567888999999
Q ss_pred EEeCcCCcCcccCCcccc
Q 035522 447 AVDLSKNNLSGVVPASVR 464 (509)
Q Consensus 447 ~L~ls~N~l~~~~~~~~~ 464 (509)
.+.+..+ ++......|.
T Consensus 337 ~i~ip~~-v~~I~~~aF~ 353 (379)
T 4h09_A 337 TISYPKS-ITLIESGAFE 353 (379)
T ss_dssp CCCCCTT-CCEECTTTTT
T ss_pred EEEECCc-cCEEchhHhh
Confidence 9888654 5444444443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.94 E-value=2e-10 Score=111.47 Aligned_cols=83 Identities=16% Similarity=0.246 Sum_probs=50.4
Q ss_pred CCccCceeeeecccCCCcCcccc---cCCCcCCeEecccCcCCcCC----hhhccCCCCCCEEeCcCCcCcccCCccccC
Q 035522 393 NCSQLQNLVLSHNTLSGIFPSEI---GNLTHLRQLDLSHNFINGTI----PSQLGNIPNISAVDLSKNNLSGVVPASVRR 465 (509)
Q Consensus 393 ~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~~~----p~~~~~l~~L~~L~ls~N~l~~~~~~~~~~ 465 (509)
.+++|+.|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+.. +..+..+++|+.|++++|.++...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 35677777777776653322222 24677888888777776543 233345677888888888776554444443
Q ss_pred -C-CeEecccCc
Q 035522 466 -I-PKLIVSENN 475 (509)
Q Consensus 466 -l-~~L~ls~N~ 475 (509)
+ ..+++++++
T Consensus 330 alg~~~~~~~~~ 341 (362)
T 2ra8_A 330 SLPMKIDVSDSQ 341 (362)
T ss_dssp HCCSEEECCSBC
T ss_pred HcCCEEEecCCc
Confidence 3 367777665
No 154
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.89 E-value=6.4e-10 Score=107.94 Aligned_cols=159 Identities=18% Similarity=0.226 Sum_probs=104.1
Q ss_pred chhhhcCCCCCCEEECcCCCCCCCCccccCCCCCcCeeeCccccCCccCccccc--CCCCCCEEEcCC--CcCCCC----
Q 035522 291 ISSTIGYLNLLEILDLSHNRLDGPIPSTIGNLTNLTSLVLSSNQLSGLLPREVG--NLKYLDSRSLDG--NNLIGP---- 362 (509)
Q Consensus 291 ~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~--~l~~L~~L~L~~--n~l~~~---- 362 (509)
+...+..+|.|+.|+++++.-. .++. + ..++|+.|++..|.+.......+. .+++|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 4455667788888888776311 2232 3 267888888888777644333333 678888888753 221111
Q ss_pred -Ccccc--CCCCCCCEEECcCCcCcccCcccc---cCCccCceeeeecccCCCc----CcccccCCCcCCeEecccCcCC
Q 035522 363 -IPPTI--GYLTNLTSLNLGYNQLSSSIPPEL---MNCSQLQNLVLSHNTLSGI----FPSEIGNLTHLRQLDLSHNFIN 432 (509)
Q Consensus 363 -~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~---~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~ 432 (509)
+...+ ..+++|++|++.+|.+.+..+..+ ..+++|++|+|+.|.+.+. ++..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11122 357899999999999875332222 3578999999999998763 3334456789999999999988
Q ss_pred cCChhhccC-CCCCCEEeCcCCc
Q 035522 433 GTIPSQLGN-IPNISAVDLSKNN 454 (509)
Q Consensus 433 ~~~p~~~~~-l~~L~~L~ls~N~ 454 (509)
+..-..+.. + ...+++++++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 654444443 2 4668888876
No 155
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.47 E-value=6.8e-10 Score=102.21 Aligned_cols=12 Identities=0% Similarity=-0.443 Sum_probs=9.4
Q ss_pred CCCCCceecCCC
Q 035522 66 HCKWMGITCNSA 77 (509)
Q Consensus 66 ~c~w~gv~c~~~ 77 (509)
.|.|.|+.|+..
T Consensus 77 l~~~~g~i~~~~ 88 (267)
T 3rw6_A 77 LKAVNYKILDRE 88 (267)
T ss_dssp HHHTTSSCBCTT
T ss_pred HHhcCcEEECCC
Confidence 578999999754
No 156
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.47 E-value=2.4e-08 Score=87.35 Aligned_cols=114 Identities=15% Similarity=0.149 Sum_probs=60.7
Q ss_pred ccCCCCCCEEEcCCC-cCCCC----CccccCCCCCCCEEECcCCcCccc----CcccccCCccCceeeeecccCCCc---
Q 035522 343 VGNLKYLDSRSLDGN-NLIGP----IPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGI--- 410 (509)
Q Consensus 343 ~~~l~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~--- 410 (509)
+...+.|++|++++| .+... +...+...++|++|+|++|.+.+. +...+...++|++|+|++|.+.+.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 344445555555554 44321 222334445566666666665532 222333445566666666666532
Q ss_pred -CcccccCCCcCCeEec--ccCcCCcC----ChhhccCCCCCCEEeCcCCcCc
Q 035522 411 -FPSEIGNLTHLRQLDL--SHNFINGT----IPSQLGNIPNISAVDLSKNNLS 456 (509)
Q Consensus 411 -~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~~~~l~~L~~L~ls~N~l~ 456 (509)
+...+...++|++|+| ++|.+... +...+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 2344555666777777 66766643 2334445567777777777664
No 157
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.38 E-value=7.8e-08 Score=84.09 Aligned_cols=66 Identities=8% Similarity=0.149 Sum_probs=30.5
Q ss_pred cCCCCCCcEEecCCC-CCccee----CchhccCCCCCCEEEccCCcCCcc----CCccccCCCCCcEEeccCCcCC
Q 035522 102 FTCFPNLITFKISGT-GFLSGR----IPSEIGALSKLQVLNLSQNHLTGT----IPSEIGSSRNLFQLDLSINILN 168 (509)
Q Consensus 102 l~~l~~L~~L~l~~~-~~~~~~----~~~~~~~l~~L~~L~L~~~~l~~~----~~~~l~~l~~L~~L~L~~n~~~ 168 (509)
+...+.|++|++++| . +... +...+...++|++|+|++|.+.+. +...+...+.|++|+|++|.+.
T Consensus 32 l~~~~~L~~L~L~~n~~-i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMN-IPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HTTCTTCCEEECTTCTT-CCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HhcCCCCCEEEecCCCC-CCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 444555555555555 4 3221 223344445555555555555432 1222233344555555555444
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.22 E-value=1.6e-07 Score=86.35 Aligned_cols=63 Identities=37% Similarity=0.437 Sum_probs=30.8
Q ss_pred CCCCCCEEEccCCcCCc--cCCccccCCCCCcEEeccCCcCCCcCCccCCCCC--CCCEEECcCCCCCC
Q 035522 129 ALSKLQVLNLSQNHLTG--TIPSEIGSSRNLFQLDLSINILNGSIPLEIGNLK--DLDYLMLQGNKLDG 193 (509)
Q Consensus 129 ~l~~L~~L~L~~~~l~~--~~~~~l~~l~~L~~L~L~~n~~~~~~p~~~~~l~--~L~~L~L~~n~~~~ 193 (509)
++++|++|+|++|.+.+ .+|..+..+++|+.|+|++|.+.+. ..+..+. +|++|++++|.+.+
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 45556666666665554 2334444555555555555555532 1122222 45555555555443
No 159
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.14 E-value=9.1e-07 Score=75.45 Aligned_cols=84 Identities=8% Similarity=0.038 Sum_probs=50.4
Q ss_pred CCCCEEECcCCcCcccCcccccCCccCceeeeeccc-CCCcCcccccCC----CcCCeEecccCc-CCcCChhhccCCCC
Q 035522 371 TNLTSLNLGYNQLSSSIPPELMNCSQLQNLVLSHNT-LSGIFPSEIGNL----THLRQLDLSHNF-INGTIPSQLGNIPN 444 (509)
Q Consensus 371 ~~L~~L~L~~n~l~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~~~~l~~ 444 (509)
..|++||+++|.+++.--..+..|++|+.|+|++|. +++.--..+..+ ++|++|+|++|. +++..-..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356666666666655434445566667777777764 554322334432 357777777764 66554455666777
Q ss_pred CCEEeCcCCc
Q 035522 445 ISAVDLSKNN 454 (509)
Q Consensus 445 L~~L~ls~N~ 454 (509)
|++|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 7777777774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.99 E-value=2.6e-06 Score=72.63 Aligned_cols=83 Identities=12% Similarity=0.032 Sum_probs=35.8
Q ss_pred CEEEEEcCCCCCcccccccCCCccCCCCCCcEEecCCCCCcceeCchhccCC----CCCCEEEccCCc-CCccCCccccC
Q 035522 79 SIVEISSYEMDNNGNAAELSQFNFTCFPNLITFKISGTGFLSGRIPSEIGAL----SKLQVLNLSQNH-LTGTIPSEIGS 153 (509)
Q Consensus 79 ~v~~l~l~~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~l----~~L~~L~L~~~~-l~~~~~~~l~~ 153 (509)
.+++|+++++.++... -..+..+++|+.|+|++|..+++.-...+..+ ++|++|++++|. +++..-..+..
T Consensus 62 ~L~~LDLs~~~Itd~G----L~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~ 137 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIG----FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH 137 (176)
T ss_dssp CEEEEEEESCCCCGGG----GGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG
T ss_pred eEeEEeCcCCCccHHH----HHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc
Confidence 4555555555544433 23344455555555555433333333333332 234455554442 33322233334
Q ss_pred CCCCcEEeccCC
Q 035522 154 SRNLFQLDLSIN 165 (509)
Q Consensus 154 l~~L~~L~L~~n 165 (509)
+++|++|++++|
T Consensus 138 ~~~L~~L~L~~c 149 (176)
T 3e4g_A 138 FRNLKYLFLSDL 149 (176)
T ss_dssp CTTCCEEEEESC
T ss_pred CCCCCEEECCCC
Confidence 444444444443
No 161
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=97.94 E-value=5.1e-06 Score=67.58 Aligned_cols=61 Identities=18% Similarity=0.288 Sum_probs=48.0
Q ss_pred CEEeCcCCcCc-ccCCccc-cCCCeEecccCccccCCCCCC---CCCCCCCccCcCCCcCCCCccccCC
Q 035522 446 SAVDLSKNNLS-GVVPASV-RRIPKLIVSENNLELENSTSS---ENAPPPQAKPFKGNKGKQRKIVTRL 509 (509)
Q Consensus 446 ~~L~ls~N~l~-~~~~~~~-~~l~~L~ls~N~l~~~~~ip~---~~~~~l~~l~l~~N~~lc~~~~~~l 509 (509)
..++.+++.++ ..+|..+ .++++|+|++|+|+. +|. ..+++++.+.+.+|||.|+|.+.|+
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~---l~~~~f~~l~~L~~L~L~~NP~~CdC~l~~l 76 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTA---LPPGLLDALPALRTAHLGANPWRCDCRLVPL 76 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSS---CCTTTGGGCTTCCEEECCSSCCBCSGGGHHH
T ss_pred CEEEeCCCCCccccCCCCCCcCCCEEECCCCcCCc---cChhhhhhccccCEEEecCCCeeccCccHHH
Confidence 36788888886 3566544 468899999999987 877 4567788899999999999998763
No 162
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.29 E-value=7.8e-05 Score=64.72 Aligned_cols=111 Identities=9% Similarity=0.096 Sum_probs=56.1
Q ss_pred CCCCCCEEEcCCC-cCCC----CCccccCCCCCCCEEECcCCcCccc----CcccccCCccCceeeeecccCCCc----C
Q 035522 345 NLKYLDSRSLDGN-NLIG----PIPPTIGYLTNLTSLNLGYNQLSSS----IPPELMNCSQLQNLVLSHNTLSGI----F 411 (509)
Q Consensus 345 ~l~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~ 411 (509)
+-+.|+.|+|+++ .+.. .+...+..-..|+.|+|++|++.+. +...+..-+.|+.|+|++|.|++. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3445555555543 3321 1223344445566666666665532 222333445566666666666532 2
Q ss_pred cccccCCCcCCeEecccC---cCCcC----ChhhccCCCCCCEEeCcCCcC
Q 035522 412 PSEIGNLTHLRQLDLSHN---FINGT----IPSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 412 ~~~~~~l~~L~~L~L~~n---~l~~~----~p~~~~~l~~L~~L~ls~N~l 455 (509)
-+.+...+.|++|+|++| .+... +...+..-+.|+.|+++.|.+
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 234455566777777654 23321 234455556777777766543
No 163
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=97.05 E-value=0.00014 Score=63.11 Aligned_cols=43 Identities=12% Similarity=0.127 Sum_probs=21.1
Q ss_pred hhcCCCCCCEEECcCC-CCCCC----CccccCCCCCcCeeeCccccCC
Q 035522 294 TIGYLNLLEILDLSHN-RLDGP----IPSTIGNLTNLTSLVLSSNQLS 336 (509)
Q Consensus 294 ~~~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~ls~n~l~ 336 (509)
.+..-+.|++|+++++ .+.+. +.+.+..-+.|+.|+|++|.+.
T Consensus 36 ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~ig 83 (197)
T 1pgv_A 36 LREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAIS 83 (197)
T ss_dssp HHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCB
T ss_pred HHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCC
Confidence 3344556666666654 44321 2223334445555555555554
No 164
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.29 E-value=0.007 Score=48.80 Aligned_cols=36 Identities=22% Similarity=0.340 Sum_probs=17.3
Q ss_pred cCCeEecccCcCCcCChhhccCCCCCCEEeCcCCcC
Q 035522 420 HLRQLDLSHNFINGTIPSQLGNIPNISAVDLSKNNL 455 (509)
Q Consensus 420 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~ls~N~l 455 (509)
+|++|+|++|+|+..-+..|..+++|+.|+|++|.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 445555555555433333444455555555555544
No 165
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=54.42 E-value=20 Score=26.67 Aligned_cols=42 Identities=17% Similarity=0.094 Sum_probs=19.6
Q ss_pred CCcccccCCCCCCEEeccCCcCcccCCcccCCCCCCcEEECcC
Q 035522 194 LIPSSIGNLTKLTGLNLSLNKLSGRLPREVGNLKILELLYLDS 236 (509)
Q Consensus 194 ~~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~ 236 (509)
+....|.++.+|+.+.+..+ ++.+-..+|.++.+|+.+.+..
T Consensus 11 I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 11 MDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp SCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred ecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344555555555555432 2223334455555555555543
No 166
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=53.36 E-value=15 Score=27.38 Aligned_cols=46 Identities=11% Similarity=0.169 Sum_probs=25.9
Q ss_pred CcccCcccccCCccCceeeeecccCCCcCcccccCCCcCCeEecccC
Q 035522 383 LSSSIPPELMNCSQLQNLVLSHNTLSGIFPSEIGNLTHLRQLDLSHN 429 (509)
Q Consensus 383 l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 429 (509)
++.+-...|.+|++|+.+.|-.+ ++.+-...|.+|.+|+.+.+.+.
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 34334455666666666666553 33344456666666666666543
Done!