BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035523
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1V05|A Chain A, Dimerization Of Human Filamin C: Crystal Structure Of The
Domain 24
Length = 96
Score = 26.6 bits (57), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 17/70 (24%), Positives = 33/70 (47%), Gaps = 8/70 (11%)
Query: 57 SIEGTSRMVLNKYEYSRPCDEIYVVGEGETLHTIS---DKCGDPFIVEHNPHIHDPDDLF 113
S GT+ M++ + PC+E+YV G ++ ++ + GD ++ + D+
Sbjct: 32 SKAGTNMMMVGVHGPKTPCEEVYVKHMGNRVYNVTYTVKEKGDYILI-----VKWGDESV 86
Query: 114 PGLVIKITAP 123
PG K+ P
Sbjct: 87 PGSPFKVKVP 96
>pdb|1Z32|X Chain X, Structure-Function Relationships In Human Salivary Alpha-
Amylase: Role Of Aromatic Residues
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1KB3|A Chain A, Three Dimensional Structure Analysis Of The R195a Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 461 KIYVSDDGKAHFSISNSAEDPFIAIH 486
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 26.2 bits (56), Expect = 5.3, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.4, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 26.2 bits (56), Expect = 5.5, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 25.8 bits (55), Expect = 5.9, Method: Composition-based stats.
Identities = 11/26 (42%), Positives = 16/26 (61%)
Query: 77 EIYVVGEGETLHTISDKCGDPFIVEH 102
+IYV +G+ +IS+ DPFI H
Sbjct: 466 KIYVSDDGKAHFSISNSAEDPFIAIH 491
>pdb|2X27|X Chain X, Crystal Structure Of The Outer Membrane Protein Oprg From
Pseudomonas Aeruginosa
Length = 212
Score = 25.4 bits (54), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 20/39 (51%), Gaps = 1/39 (2%)
Query: 51 DRDTSVSIEGTSRMVLNKYEYSRPCD-EIYVVGEGETLH 88
D DT SI G S + +NK + D +Y++G G H
Sbjct: 173 DIDTKASINGPSALGVNKTKVDVDVDPWVYMIGFGYKFH 211
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,631,216
Number of Sequences: 62578
Number of extensions: 130874
Number of successful extensions: 276
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 32
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)