Query 035523
Match_columns 125
No_of_seqs 141 out of 296
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:30:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035523.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035523hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2l9y_A CVNH-LYSM lectin; carbo 99.6 1.4E-15 4.8E-20 115.1 4.2 48 75-123 61-110 (167)
2 1e0g_A Membrane-bound lytic mu 99.5 1.1E-14 3.7E-19 87.0 4.4 43 77-122 3-47 (48)
3 2djp_A Hypothetical protein SB 99.4 2.3E-14 7.8E-19 94.2 2.3 45 77-122 16-62 (77)
4 4eby_A Chitin elicitor recepto 99.2 5.5E-12 1.9E-16 98.4 5.3 46 77-122 10-65 (212)
5 4eby_A Chitin elicitor recepto 99.0 1.8E-10 6.2E-15 89.8 3.7 44 77-122 79-127 (212)
6 4a1k_A Putative L, D-transpept 98.7 6E-09 2.1E-13 78.0 4.2 44 77-122 3-48 (165)
7 2gu1_A Zinc peptidase; alpha/b 98.5 1.8E-08 6.2E-13 82.8 1.5 48 75-122 6-58 (361)
8 3slu_A M23 peptidase domain pr 97.6 4E-05 1.4E-09 64.2 4.3 47 75-121 13-64 (371)
9 2gu1_A Zinc peptidase; alpha/b 97.6 2.4E-05 8E-10 64.3 2.0 45 77-121 101-151 (361)
10 2l9y_A CVNH-LYSM lectin; carbo 96.5 3.3E-05 1.1E-09 58.1 -5.8 34 77-110 126-161 (167)
11 2l32_A Small archaeal modifier 61.0 7.5 0.00026 25.2 3.1 46 77-122 13-61 (74)
12 2kmm_A Guanosine-3',5'-BIS(dip 58.5 12 0.00042 22.7 3.7 46 76-121 10-61 (73)
13 1y56_A Hypothetical protein PH 47.9 9.6 0.00033 31.3 2.4 35 75-111 21-55 (493)
14 3ah7_A [2Fe-2S]ferredoxin; [2F 46.5 13 0.00045 24.8 2.6 22 75-96 15-36 (113)
15 2bt6_A Adrenodoxin 1; rutheniu 40.7 20 0.00068 23.7 2.7 19 78-96 20-38 (108)
16 1i7h_A Ferredoxin; 2Fe-2S,elec 40.1 19 0.00065 24.0 2.6 22 75-96 15-36 (111)
17 1frr_A Ferredoxin I; electron 40.0 19 0.00065 23.0 2.4 20 77-96 13-32 (95)
18 1ryj_A Unknown; beta/alpha pro 36.9 28 0.00096 21.7 2.8 48 76-123 15-66 (70)
19 1frd_A Heterocyst [2Fe-2S] fer 36.7 19 0.00065 23.3 2.1 21 76-96 15-35 (98)
20 1xlq_A Putidaredoxin, PDX; [2F 36.0 28 0.00096 22.8 2.9 21 77-97 13-33 (106)
21 1uwm_A Ferredoxin VI, FDVI; el 35.7 22 0.00076 23.3 2.3 21 77-97 13-33 (106)
22 1jq4_A Methane monooxygenase c 34.6 21 0.00071 23.2 2.0 21 76-96 16-36 (98)
23 2wlb_A ETP1-FD, electron trans 31.8 31 0.001 22.5 2.5 20 77-96 16-35 (103)
24 2cu3_A Unknown function protei 31.5 13 0.00044 22.8 0.5 46 77-123 7-60 (64)
25 2y5c_A Adrenodoxin-like protei 30.7 30 0.001 22.9 2.3 19 78-96 19-37 (109)
26 1wri_A Ferredoxin II, ferredox 29.4 35 0.0012 21.9 2.4 19 77-95 13-31 (93)
27 1b9r_A Protein (terpredoxin); 29.3 29 0.00099 22.7 2.0 20 77-96 13-32 (105)
28 2kl0_A Putative thiamin biosyn 29.3 20 0.00069 22.9 1.2 46 77-123 8-61 (73)
29 1awd_A Ferredoxin; electron tr 29.0 32 0.0011 22.1 2.2 20 77-96 12-31 (94)
30 1tyg_B YJBS; alpha beta barrel 28.8 19 0.00066 24.1 1.1 48 76-123 27-83 (87)
31 1iue_A Ferredoxin; electron tr 27.9 36 0.0012 22.1 2.3 20 77-96 14-33 (98)
32 1a70_A Ferredoxin; iron-sulfur 27.6 37 0.0013 22.0 2.3 20 77-96 14-33 (97)
33 1f0z_A THis protein; ubiquitin 27.1 16 0.00056 22.4 0.4 47 77-123 8-62 (66)
34 1czp_A Ferredoxin I; [2Fe-2S] 26.9 39 0.0013 21.9 2.3 20 77-96 16-35 (98)
35 3slu_A M23 peptidase domain pr 26.6 96 0.0033 25.6 5.1 35 84-121 117-159 (371)
36 2lfc_A Fumarate reductase, fla 26.2 32 0.0011 24.4 1.9 17 80-96 91-107 (160)
37 2k5p_A THis protein, thiamine- 25.9 46 0.0016 21.5 2.5 47 77-123 8-65 (78)
38 3lxf_A Ferredoxin; iron, iron- 24.5 45 0.0015 22.2 2.3 19 78-96 14-32 (104)
39 2e6z_A Transcription elongatio 23.5 62 0.0021 19.9 2.7 18 108-125 4-21 (59)
40 1doi_A 2Fe-2S ferredoxin; halo 23.4 55 0.0019 22.9 2.7 19 78-96 39-57 (128)
41 1l5p_A Ferredoxin; [2Fe-2S] cl 22.9 33 0.0011 22.1 1.3 20 78-97 13-32 (93)
42 3hui_A Ferredoxin; cytochrome 20.6 62 0.0021 22.6 2.5 20 77-96 34-53 (126)
43 2wfw_A ARC; ATP-binding protei 20.2 51 0.0017 24.8 2.0 24 99-123 32-55 (153)
No 1
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=99.56 E-value=1.4e-15 Score=115.11 Aligned_cols=48 Identities=25% Similarity=0.452 Sum_probs=42.0
Q ss_pred CCceEEeccCchHHHHHHHhCC-hh-hhhhCCCCCCCCCcCCCcEEEeCCC
Q 035523 75 CDEIYVVGEGETLHTISDKCGD-PF-IVEHNPHIHDPDDLFPGLVIKITAP 123 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd-~~-il~~Np~I~nP~~I~PGQvIrI~~~ 123 (125)
....|+||+|||||+||++||. .. |+++| +|.||+.|||||+|+|+..
T Consensus 61 ~~~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~~~~~~~i~~Gq~L~ip~~ 110 (167)
T 2l9y_A 61 GTATVTVQQGDTLRDIGRRFDCDFHEIARRN-NIQNEDLIYPGQVLQVPTK 110 (167)
T ss_dssp SCEEEEECTTCCHHHHHHHTTCCHHHHHHHH-TCCGGGCCCTTEEEEESCC
T ss_pred CCceEEECCCCcHHHHHHHcCCCHHHHHHHc-CCCCcccccCCCEEEEcCC
Confidence 5578999999999999999994 43 66666 8999999999999999864
No 2
>1e0g_A Membrane-bound lytic murein transglycosylase D; cell WALL, hydrolase, glycosidase, lipoprotein, outer membrane, multigene family; NMR {Escherichia coli} SCOP: d.7.1.1
Probab=99.51 E-value=1.1e-14 Score=86.97 Aligned_cols=43 Identities=26% Similarity=0.437 Sum_probs=38.2
Q ss_pred ceEEeccCchHHHHHHHhCCh--hhhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTISDKCGDP--FIVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~--~il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
..|+||+|||||+||.+||.. .|.+.|+ +|+.|+|||+|+||.
T Consensus 3 ~~y~V~~GDtl~~Ia~~~~~~~~~l~~~N~---~~~~l~~G~~l~ip~ 47 (48)
T 1e0g_A 3 ITYRVRKGDSLSSIAKRHGVNIKDVMRWNS---DTANLQPGDKLTLFV 47 (48)
T ss_dssp CEEEECTTCCHHHHHHHHTCCHHHHHHHCS---CGGGCCTTEEEECCC
T ss_pred EEEEEcCCCcHHHHHHHHCcCHHHHHHhCC---CCCcCCcCCEEEEec
Confidence 469999999999999999943 4888887 899999999999985
No 3
>2djp_A Hypothetical protein SB145; LYSM, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.44 E-value=2.3e-14 Score=94.16 Aligned_cols=45 Identities=22% Similarity=0.185 Sum_probs=38.9
Q ss_pred ceEEeccCchHHHHHHHhCC-hh-hhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTISDKCGD-PF-IVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd-~~-il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
..|+||+|||||+||++||. .. |.++| ++.+|+.|+|||+|+||.
T Consensus 16 ~~y~V~~GDTL~~IA~~~~~~~~~l~~~N-~l~~~~~l~~Gq~l~iP~ 62 (77)
T 2djp_A 16 LEHQLEPGDTLAGLALKYGVTMEQIKRAN-RLYTNDSIFLKKTLYIPI 62 (77)
T ss_dssp EEECCCTTCCHHHHHHHHTCCHHHHHHHH-TCCCSSCGGGSSCEEEEE
T ss_pred EEEEECCCCcHHHHHHHHCcCHHHHHHHc-CCCCccccCCCCEEEECC
Confidence 46999999999999999994 43 66666 788999999999999974
No 4
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.24 E-value=5.5e-12 Score=98.35 Aligned_cols=46 Identities=24% Similarity=0.333 Sum_probs=41.4
Q ss_pred ceEEeccCchHHHHHHHhC-C---------hhhhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTISDKCG-D---------PFIVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~g-d---------~~il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
..|+||+|||||+||.+|| . ..|.++||+|.||+.|++||+|+||.
T Consensus 10 ~~Y~V~~GDTL~~IA~~~~vsv~~~~~~~~~~I~~~Np~l~~~~~l~~Gq~L~IP~ 65 (212)
T 4eby_A 10 ASYYLENGTTLSVINQNLNSSIAPYDQINFDPILRYNSNIKDKDRIQMGSRVLVPF 65 (212)
T ss_dssp EEEECCTTCCHHHHHHHTCCSSSCCCSSCCHHHHTTCTTCSCTTSCCTTCEEEEEE
T ss_pred EEEEeCCCCCHHHHHHHHCCCchhccccCHHHHHHhccCCCCcCccCCCCEEEEec
Confidence 4699999999999999998 3 35888888999999999999999984
No 5
>4eby_A Chitin elicitor receptor kinase 1; pathogen-associated molecular patterns, pattern recognition receptors, LYSM, lysine chitin oligomer; HET: NAG BMA; 1.65A {Arabidopsis thaliana} PDB: 4ebz_A*
Probab=99.00 E-value=1.8e-10 Score=89.78 Aligned_cols=44 Identities=11% Similarity=0.221 Sum_probs=37.8
Q ss_pred ceEEeccCchHHHHH-HHhC--Ch--hhhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTIS-DKCG--DP--FIVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA-~r~g--d~--~il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
..|+||+|||||+|| ++|| .. .|.++|+ .+|+.|+|||+|+||.
T Consensus 79 ~~Y~V~~GDTL~~IA~~~y~~lvt~~~L~~~N~--~~~~~l~~Gq~L~IP~ 127 (212)
T 4eby_A 79 FSYSVRQEDTYERVAISNYANLTTMESLQARNP--FPATNIPLSATLNVLV 127 (212)
T ss_dssp EEEECCTTCCHHHHHHTTTTTSSCHHHHHHHCC--SCTTCCCTTCEEEEEE
T ss_pred eEEEecCCCcHHHHHHHhcCCCCCHHHHHHhcC--CCcccCCCCCEEEEcC
Confidence 579999999999999 7898 43 4777887 4789999999999974
No 6
>4a1k_A Putative L, D-transpeptidase YKUD; transferase, peptidoglycan synthesis; HET: CME; 1.75A {Bacillus subtilis} PDB: 4a1j_A 4a1i_A* 1y7m_A 3zqd_A 4a52_A*
Probab=98.74 E-value=6e-09 Score=78.02 Aligned_cols=44 Identities=27% Similarity=0.432 Sum_probs=37.6
Q ss_pred ceEEeccCchHHHHHHHhCC--hhhhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTISDKCGD--PFIVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd--~~il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
.+|+||+||||.+||++|+. ..+.++||.+ ||. +.+||+|.||.
T Consensus 3 ~~y~V~~GdtL~~IA~~f~~g~~~l~~aNp~v-d~~-l~~g~~i~ip~ 48 (165)
T 4a1k_A 3 LTYQVKQGDTLNSIAADFRISTAALLQANPSL-QAG-LTAGQSIVIPG 48 (165)
T ss_dssp EEEECCTTCCHHHHHHHTTCCHHHHHHHCGGG-GGC-CCTTCEEEETT
T ss_pred EEEEECCCCCHHHHHHHhCCCHHHHHHhCccC-CCc-cCCCccccCcc
Confidence 46999999999999999984 3599999876 665 58999999964
No 7
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=98.53 E-value=1.8e-08 Score=82.80 Aligned_cols=48 Identities=21% Similarity=0.144 Sum_probs=37.3
Q ss_pred CCceEEeccCchHHHHHHHhCC-hh-hhhhCCCC---CCCCCcCCCcEEEeCC
Q 035523 75 CDEIYVVGEGETLHTISDKCGD-PF-IVEHNPHI---HDPDDLFPGLVIKITA 122 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd-~~-il~~Np~I---~nP~~I~PGQvIrI~~ 122 (125)
....|+||+|||||+||++||. .. |.+.|+.. .+++.|+|||+|+|+.
T Consensus 6 ~~~~~~Vk~GDTL~~Ia~r~gvs~~~l~~~n~~~~~~~~~~~L~~Gq~L~i~~ 58 (361)
T 2gu1_A 6 KRIHYMVKVGDTLSGIFAQLGVPYSILQKILSVDLDHLQLDMIQPGEELELMM 58 (361)
T ss_dssp -CEEEECCTTCCHHHHHHHTTCCHHHHHHHHHHGGGTCCGGGCCTTCEEEEEE
T ss_pred CceEEEECCCCcHHHHHHHcCCCHHHHHHHHhhcccccchhcCCCCCEEEEEE
Confidence 4567999999999999999994 33 55555432 3589999999999963
No 8
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=97.63 E-value=4e-05 Score=64.21 Aligned_cols=47 Identities=17% Similarity=0.108 Sum_probs=34.6
Q ss_pred CCceEEeccCchHHHHHHHhCCh-----hhhhhCCCCCCCCCcCCCcEEEeC
Q 035523 75 CDEIYVVGEGETLHTISDKCGDP-----FIVEHNPHIHDPDDLFPGLVIKIT 121 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd~-----~il~~Np~I~nP~~I~PGQvIrI~ 121 (125)
....|+|++||||.+|-.++|.+ .++++.....+...|+|||.|++.
T Consensus 13 ~W~~~~V~~GDTL~~IL~r~Gls~~di~~i~~~~~~~~~l~~LrpGq~l~i~ 64 (371)
T 3slu_A 13 YWVQEAVQPGDSLADVLARSGMARDEIARITEKYGGEADLRHLRADQSVHVL 64 (371)
T ss_dssp EEEEEECCTTCCHHHHHHHTTCCHHHHHHHHTTC------CCBCSSSEEEEE
T ss_pred ceEEEEECCCCcHHHHHHHcCCCHHHHHHHHHhccccCchhhCCCCCEEEEE
Confidence 44679999999999999999942 366667777789999999999984
No 9
>2gu1_A Zinc peptidase; alpha/beta, beta barrel, structural genomics, PSI, protein structure initiative; 1.90A {Vibrio cholerae}
Probab=97.56 E-value=2.4e-05 Score=64.28 Aligned_cols=45 Identities=11% Similarity=0.084 Sum_probs=32.8
Q ss_pred ceEEeccCchHHHHHHHhCC-hhhhhhCCCCCCC-----CCcCCCcEEEeC
Q 035523 77 EIYVVGEGETLHTISDKCGD-PFIVEHNPHIHDP-----DDLFPGLVIKIT 121 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd-~~il~~Np~I~nP-----~~I~PGQvIrI~ 121 (125)
..|+|+.|||||+||.++|. +..+.++++|... ..|+|||+++|.
T Consensus 101 ~~~~v~igdSL~~iA~~~Gvs~~~i~~ln~i~~~~idf~~~Lr~GD~l~V~ 151 (361)
T 2gu1_A 101 ILFSGEINGSFSVSARRVGLTSSQVANITQVMKDKIDFSRSLRAGDRFDIL 151 (361)
T ss_dssp EEEEEESSSCHHHHHHHTTCCHHHHHHHHHHHTTTCCTTTCCCC-CEEEEE
T ss_pred EEEEEEECCcHHHHHHHcCCCHHHHHHHHHhhcccccccccCCCCCEEEEE
Confidence 46999999999999999994 4433333344332 569999999985
No 10
>2l9y_A CVNH-LYSM lectin; carbohydrate, sugar binding protein; NMR {Magnaporthe oryzae 70-15}
Probab=96.55 E-value=3.3e-05 Score=58.10 Aligned_cols=34 Identities=18% Similarity=0.227 Sum_probs=30.3
Q ss_pred ceEEeccCchHHHHHHHhCCh--hhhhhCCCCCCCC
Q 035523 77 EIYVVGEGETLHTISDKCGDP--FIVEHNPHIHDPD 110 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~--~il~~Np~I~nP~ 110 (125)
..|+|++||||++||+++|.. .++..|++|.|+|
T Consensus 126 ~~~~v~~GdtL~aIA~r~G~~v~s~i~Ln~~I~N~n 161 (167)
T 2l9y_A 126 DVRLVDGGKVLEAELRYSGGWNRSRIYLDEHIGNRN 161 (167)
T ss_dssp EEEEETTTTEEEEEEEETTEEEEEEECGGGTEEESS
T ss_pred eEEEeCCcCChHHHHHHcCCceEEEEEcccccCcCC
Confidence 579999999999999999854 5888899999997
No 11
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=61.02 E-value=7.5 Score=25.16 Aligned_cols=46 Identities=11% Similarity=-0.026 Sum_probs=38.8
Q ss_pred ceEEeccCchHHHHHHHhCCh---hhhhhCCCCCCCCCcCCCcEEEeCC
Q 035523 77 EIYVVGEGETLHTISDKCGDP---FIVEHNPHIHDPDDLFPGLVIKITA 122 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~---~il~~Np~I~nP~~I~PGQvIrI~~ 122 (125)
..+.+.+|-|+-++-.+.|.+ .++..|-.+-.++.+-.|+.|.|-.
T Consensus 13 ~~~ev~~g~Tv~dLL~~Lgl~~~~VvV~vNG~~v~~d~~l~GD~VeIv~ 61 (74)
T 2l32_A 13 SEVAVDDDGTYADLVRAVDLSPHEVTVLVDGRPVPEDQSVEVDRVKVLR 61 (74)
T ss_dssp EEEECSTTCSHHHHHHTTCCCSSCCCEECCCCCCCTTSSSCCCCEEECS
T ss_pred eeEEcCCCCcHHHHHHHcCCCcceEEEEECCEECCHHHCCCCCEEEEEE
Confidence 347899999999999999943 3888998888998888899999854
No 12
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=58.46 E-value=12 Score=22.68 Aligned_cols=46 Identities=15% Similarity=0.073 Sum_probs=33.6
Q ss_pred CceEEeccCchHHHHHHHhCCh---h--hhhhCCCCCCCC-CcCCCcEEEeC
Q 035523 76 DEIYVVGEGETLHTISDKCGDP---F--IVEHNPHIHDPD-DLFPGLVIKIT 121 (125)
Q Consensus 76 ~~~Y~Vk~GDTL~~IA~r~gd~---~--il~~Np~I~nP~-~I~PGQvIrI~ 121 (125)
++.+.+.+|-|+.++|.+.+.. . ..+.|..+.+.+ .|..|+.|.|-
T Consensus 10 g~~~~~~~g~T~~dla~~i~~~l~~~~vaa~vNg~lvdl~~~L~~~~~Veiv 61 (73)
T 2kmm_A 10 GEIKRLPQGATALDFAYSLHSDLGDHCIGAKVNHKLVPLSYVLNSGDQVEVL 61 (73)
T ss_dssp CCEEEECTTCBHHHHHHHHCSHHHHTEEEEEETTEECCTTCBCCSSSBEEEE
T ss_pred CCEEEcCCCCcHHHHHHHHhhccccceEEEEECCEEeCCCcCcCCCCEEEEE
Confidence 4568899999999999998632 2 334577776664 67788888763
No 13
>1y56_A Hypothetical protein PH1363; dehydrogenase, protein-protein complex, oxidoreductase; HET: FAD FMN ATP CXS; 2.86A {Pyrococcus horikoshii}
Probab=47.87 E-value=9.6 Score=31.31 Aligned_cols=35 Identities=11% Similarity=-0.070 Sum_probs=25.5
Q ss_pred CCceEEeccCchHHHHHHHhCChhhhhhCCCCCCCCC
Q 035523 75 CDEIYVVGEGETLHTISDKCGDPFIVEHNPHIHDPDD 111 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd~~il~~Np~I~nP~~ 111 (125)
.+..|.|.+||||.+.+.+.|. .++..+++. .|.-
T Consensus 21 dg~~~~~~~g~ti~~a~~~~g~-~~~~~~~~~-~p~g 55 (493)
T 1y56_A 21 EGKELEAYEGEKLPVALLANEI-YWLTTSNEG-RKRG 55 (493)
T ss_dssp TTEEEEEETTCBHHHHHHHTTC-CCCEECTTS-CEEC
T ss_pred CCEEEEecCCCHHHHHHHHCCC-ceecCCCCC-CCCc
Confidence 4556999999999999999987 334445555 4443
No 14
>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}
Probab=46.53 E-value=13 Score=24.82 Aligned_cols=22 Identities=9% Similarity=-0.019 Sum_probs=19.0
Q ss_pred CCceEEeccCchHHHHHHHhCC
Q 035523 75 CDEIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd 96 (125)
.+..+.|.+|+||.+.|.+.|.
T Consensus 15 ~~~~v~~~~g~tlL~aa~~~Gi 36 (113)
T 3ah7_A 15 EGLTVEVKPGTNILELAHDHHI 36 (113)
T ss_dssp TCEEEECCTTCBHHHHHHHTTC
T ss_pred CCeEEEECCCCcHHHHHHHcCC
Confidence 4567899999999999999883
No 15
>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*
Probab=40.68 E-value=20 Score=23.74 Aligned_cols=19 Identities=11% Similarity=-0.052 Sum_probs=17.0
Q ss_pred eEEeccCchHHHHHHHhCC
Q 035523 78 IYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 78 ~Y~Vk~GDTL~~IA~r~gd 96 (125)
.+.+.+|+||.+.|.++|.
T Consensus 20 ~v~~~~g~tLL~aa~~~gi 38 (108)
T 2bt6_A 20 TTKGKIGDSLLDVVVQNNL 38 (108)
T ss_dssp EEEEETTCBHHHHHHHTTC
T ss_pred EEEECCCChHHHHHHHcCC
Confidence 5789999999999999883
No 16
>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1
Probab=40.09 E-value=19 Score=23.99 Aligned_cols=22 Identities=18% Similarity=0.190 Sum_probs=18.9
Q ss_pred CCceEEeccCchHHHHHHHhCC
Q 035523 75 CDEIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 75 ~~~~Y~Vk~GDTL~~IA~r~gd 96 (125)
.+..+.|.+|+||.+.+.+.|.
T Consensus 15 ~~~~~~~~~g~tlL~a~~~~gi 36 (111)
T 1i7h_A 15 DGAVLEANSGETILDAALRNGI 36 (111)
T ss_dssp TCEEEECCTTCBHHHHHHHTTC
T ss_pred CCeEEEeCCCCcHHHHHHHcCC
Confidence 4567899999999999999873
No 17
>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1
Probab=40.00 E-value=19 Score=23.02 Aligned_cols=20 Identities=25% Similarity=0.275 Sum_probs=17.7
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+++.|.
T Consensus 13 ~~~~~~~g~tlL~a~~~~gi 32 (95)
T 1frr_A 13 FTLDVPEGTTILDAAEEAGY 32 (95)
T ss_dssp EEEEECTTCCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 46889999999999999984
No 18
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=36.90 E-value=28 Score=21.67 Aligned_cols=48 Identities=17% Similarity=0.278 Sum_probs=36.8
Q ss_pred CceEEeccCchHHHHHHHhCC-h--hhhhhCCCCCCC-CCcCCCcEEEeCCC
Q 035523 76 DEIYVVGEGETLHTISDKCGD-P--FIVEHNPHIHDP-DDLFPGLVIKITAP 123 (125)
Q Consensus 76 ~~~Y~Vk~GDTL~~IA~r~gd-~--~il~~Np~I~nP-~~I~PGQvIrI~~~ 123 (125)
...+.+..|-|+.++-.+.+. + ..++.|-.+-++ ..+.+|++|.|-++
T Consensus 15 ~~~~~~~~~~tv~~Ll~~l~~~~~~v~vavN~~~v~~~~~L~~gD~V~ii~~ 66 (70)
T 1ryj_A 15 KKILESGAPRRIKDVLGELEIPIETVVVKKNGQIVIDEEEIFDGDIIEVIRV 66 (70)
T ss_dssp EEEEEESSCCBHHHHHHHTTCCTTTEEEEETTEECCTTSBCCTTCEEEEEEC
T ss_pred ceeEECCCCCcHHHHHHHhCCCCCCEEEEECCEECCCcccCCCCCEEEEEec
Confidence 345888899999999999873 2 368888766555 58999999988554
No 19
>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1
Probab=36.73 E-value=19 Score=23.28 Aligned_cols=21 Identities=19% Similarity=0.196 Sum_probs=18.2
Q ss_pred CceEEeccCchHHHHHHHhCC
Q 035523 76 DEIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 76 ~~~Y~Vk~GDTL~~IA~r~gd 96 (125)
+..+.|.+|+||.+.+.+.|.
T Consensus 15 ~~~~~~~~g~tlL~a~~~~gi 35 (98)
T 1frd_A 15 DTTIEIDEETTILDGAEENGI 35 (98)
T ss_dssp EEEEEEETTSCHHHHHHHTTC
T ss_pred CEEEEeCCCCcHHHHHHHcCC
Confidence 346889999999999999984
No 20
>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A
Probab=36.02 E-value=28 Score=22.83 Aligned_cols=21 Identities=19% Similarity=0.093 Sum_probs=18.1
Q ss_pred ceEEeccCchHHHHHHHhCCh
Q 035523 77 EIYVVGEGETLHTISDKCGDP 97 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~ 97 (125)
..+.|.+|+||.+.|.+.|.+
T Consensus 13 ~~~~~~~g~tlLeaa~~~gi~ 33 (106)
T 1xlq_A 13 RELDVADGVSLMQAAVSNGIY 33 (106)
T ss_dssp EEEECCTTCBHHHHHHHTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 468899999999999999843
No 21
>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A
Probab=35.71 E-value=22 Score=23.33 Aligned_cols=21 Identities=19% Similarity=0.159 Sum_probs=18.1
Q ss_pred ceEEeccCchHHHHHHHhCCh
Q 035523 77 EIYVVGEGETLHTISDKCGDP 97 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~ 97 (125)
..+.|.+|+||.+.|.+.|.+
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi~ 33 (106)
T 1uwm_A 13 HEVEAKPGLTVMEAARDNGVP 33 (106)
T ss_dssp EEEECCTTSBHHHHHHTTTCT
T ss_pred EEEEECCCCcHHHHHHHcCCC
Confidence 468899999999999998843
No 22
>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2
Probab=34.56 E-value=21 Score=23.16 Aligned_cols=21 Identities=10% Similarity=-0.050 Sum_probs=18.2
Q ss_pred CceEEeccCchHHHHHHHhCC
Q 035523 76 DEIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 76 ~~~Y~Vk~GDTL~~IA~r~gd 96 (125)
+..+.|.+|+||.+.+++.|.
T Consensus 16 ~~~~~~~~g~tlL~a~~~~gi 36 (98)
T 1jq4_A 16 SLRFECRSDEDVITAALRQNI 36 (98)
T ss_dssp EEEEEEESCCTHHHHHHHHTC
T ss_pred cEEEEeCCCChHHHHHHHcCC
Confidence 456889999999999999884
No 23
>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}
Probab=31.83 E-value=31 Score=22.52 Aligned_cols=20 Identities=10% Similarity=0.141 Sum_probs=17.5
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+++.|.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi 35 (103)
T 2wlb_A 16 IMIEGNEGDSILDLAHANNI 35 (103)
T ss_dssp EEEEECTTCBHHHHHHHTTC
T ss_pred EEEEECCCCHHHHHHHHcCC
Confidence 46889999999999999873
No 24
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=31.53 E-value=13 Score=22.77 Aligned_cols=46 Identities=26% Similarity=0.225 Sum_probs=34.4
Q ss_pred ceEEeccCchHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEeCCC
Q 035523 77 EIYVVGEGETLHTISDKCGD-P--FIVEHNPHIHDP-----DDLFPGLVIKITAP 123 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd-~--~il~~Np~I~nP-----~~I~PGQvIrI~~~ 123 (125)
+.+.+ +|-|+.++-...+. + ..++.|-.+-++ ..+..|++|.|-|+
T Consensus 7 ~~~~~-~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~dgD~v~i~~~ 60 (64)
T 2cu3_A 7 EPRPL-EGKTLKEVLEEMGVELKGVAVLLNEEAFLGLEVPDRPLRDGDVVEVVAL 60 (64)
T ss_dssp EEECC-TTCCHHHHHHHHTBCGGGEEEEETTEEEEGGGCCCCCCCTTCEEEEEEC
T ss_pred EEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECCccccCCcCCCCCCEEEEEee
Confidence 34667 88999999888873 3 267888766544 47999999988654
No 25
>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}
Probab=30.73 E-value=30 Score=22.90 Aligned_cols=19 Identities=11% Similarity=0.150 Sum_probs=16.7
Q ss_pred eEEeccCchHHHHHHHhCC
Q 035523 78 IYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 78 ~Y~Vk~GDTL~~IA~r~gd 96 (125)
...|.+|+||.+.|.++|.
T Consensus 19 ~~~~~~g~tlL~aa~~~gi 37 (109)
T 2y5c_A 19 PVSGRVGDNVLHLAQRHGV 37 (109)
T ss_dssp EEEEETTCBHHHHHHHTTC
T ss_pred EEEECCCCcHHHHHHHcCC
Confidence 3778999999999999883
No 26
>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1
Probab=29.37 E-value=35 Score=21.94 Aligned_cols=19 Identities=26% Similarity=0.293 Sum_probs=17.0
Q ss_pred ceEEeccCchHHHHHHHhC
Q 035523 77 EIYVVGEGETLHTISDKCG 95 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~g 95 (125)
..+.|.+|+||.+.+.+.|
T Consensus 13 ~~~~~~~g~tlL~a~~~~g 31 (93)
T 1wri_A 13 ITFDVEPGERLIDIGSEKA 31 (93)
T ss_dssp EEEEECTTSCHHHHHHHHS
T ss_pred EEEEECCCCcHHHHHHHCc
Confidence 4588999999999999987
No 27
>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1
Probab=29.28 E-value=29 Score=22.72 Aligned_cols=20 Identities=15% Similarity=0.240 Sum_probs=17.7
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+.+.|.
T Consensus 13 ~~~~~~~g~tlL~aa~~~gi 32 (105)
T 1b9r_A 13 YAVDAQDGQSLMEVATQNGV 32 (105)
T ss_dssp EEEECCTTCCTTHHHHHHTC
T ss_pred EEEEECCCChHHHHHHHcCC
Confidence 46889999999999999884
No 28
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=29.26 E-value=20 Score=22.94 Aligned_cols=46 Identities=20% Similarity=0.200 Sum_probs=35.7
Q ss_pred ceEEeccCchHHHHHHHhCC-h--hhhhhCCCCCCC-----CCcCCCcEEEeCCC
Q 035523 77 EIYVVGEGETLHTISDKCGD-P--FIVEHNPHIHDP-----DDLFPGLVIKITAP 123 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd-~--~il~~Np~I~nP-----~~I~PGQvIrI~~~ 123 (125)
+.+.+ +|-||.++-.+.|. + ..++.|..|-.+ ..+..|++|-|-++
T Consensus 8 ~~~e~-~~~Tl~~LL~~l~~~~~~vAV~vNg~iVpr~~~~~~~L~dGD~veIv~~ 61 (73)
T 2kl0_A 8 EQREV-QSASVAALMTELDCTGGHFAVALNYDVVPRGKWDETPVTAGDEIEILTP 61 (73)
T ss_dssp EEECC-CCSBHHHHHHHTTCCSSSCEEEESSSEECHHHHTTCBCCTTCEEEEECC
T ss_pred EEEEc-CCCcHHHHHHHcCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEcc
Confidence 45777 89999999999983 3 378888877544 47999999988554
No 29
>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1
Probab=29.02 E-value=32 Score=22.12 Aligned_cols=20 Identities=15% Similarity=0.147 Sum_probs=17.6
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+.+.|.
T Consensus 12 ~~~~~~~g~tlL~a~~~~gi 31 (94)
T 1awd_A 12 ETIECPEDTYILDAAEEAGL 31 (94)
T ss_dssp EEEECCTTSCHHHHHHHTTC
T ss_pred EEEEECCCCcHHHHHHHcCC
Confidence 45889999999999999884
No 30
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=28.83 E-value=19 Score=24.09 Aligned_cols=48 Identities=21% Similarity=0.102 Sum_probs=36.2
Q ss_pred CceEEeccC-chHHHHHHHhCCh---hhhhhCCCCCCC-----CCcCCCcEEEeCCC
Q 035523 76 DEIYVVGEG-ETLHTISDKCGDP---FIVEHNPHIHDP-----DDLFPGLVIKITAP 123 (125)
Q Consensus 76 ~~~Y~Vk~G-DTL~~IA~r~gd~---~il~~Np~I~nP-----~~I~PGQvIrI~~~ 123 (125)
++.+.+..| -||.++-.+.+.+ ..++.|..+-.+ ..|..|++|-|-++
T Consensus 27 Ge~~el~~~~~Tv~dLL~~L~~~~~~vaVavNg~iV~~~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 27 GKDVKWKKDTGTIQDLLASYQLENKIVIVERNKEIIGKERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TEEECCSSSCCBHHHHHHHTTCTTSCCEEEETTEEECGGGTTTSBCCSSSEEEEEEE
T ss_pred CEEEECCCCCCcHHHHHHHhCCCCCCEEEEECCEECChhhcCCcCCCCCCEEEEEcc
Confidence 345778887 8999999998732 368888777554 46999999988553
No 31
>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1
Probab=27.95 E-value=36 Score=22.07 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=17.6
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+++.|.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi 33 (98)
T 1iue_A 14 KKIECNEDEYILDASERQNV 33 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 45889999999999999884
No 32
>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A
Probab=27.60 E-value=37 Score=21.97 Aligned_cols=20 Identities=5% Similarity=0.024 Sum_probs=17.6
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+.+.|.
T Consensus 14 ~~~~~~~g~tlL~a~~~~gi 33 (97)
T 1a70_A 14 VEFQCPDDVYILDAAEEEGI 33 (97)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHcCC
Confidence 45889999999999999884
No 33
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=27.15 E-value=16 Score=22.36 Aligned_cols=47 Identities=15% Similarity=0.145 Sum_probs=35.2
Q ss_pred ceEEeccCchHHHHHHHhCCh---hhhhhCCCCCCC-----CCcCCCcEEEeCCC
Q 035523 77 EIYVVGEGETLHTISDKCGDP---FIVEHNPHIHDP-----DDLFPGLVIKITAP 123 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd~---~il~~Np~I~nP-----~~I~PGQvIrI~~~ 123 (125)
+.+.+..|-|+.++-...+.+ ..++.|-.+-.+ ..+..|++|.|-|+
T Consensus 8 ~~~~~~~~~tv~~ll~~l~~~~~~v~vavN~~~v~~~~~~~~~L~~gD~v~i~~~ 62 (66)
T 1f0z_A 8 QAMQCAAGQTVHELLEQLDQRQAGAALAINQQIVPREQWAQHIVQDGDQILLFQV 62 (66)
T ss_dssp CEECCCTTCCHHHHHHHHTCCCSSEEEEETTEEECHHHHTTCCCCTTEEECEEES
T ss_pred EEEEcCCCCcHHHHHHHcCCCCCCEEEEECCEECCchhcCCcCCCCCCEEEEEee
Confidence 346778899999998888732 368888766543 57999999988554
No 34
>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...
Probab=26.93 E-value=39 Score=21.86 Aligned_cols=20 Identities=15% Similarity=0.134 Sum_probs=17.7
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
..+.|.+|+||.+.+.+.|.
T Consensus 16 ~~~~~~~g~tlL~a~~~~gi 35 (98)
T 1czp_A 16 HEIEVPDDEYILDAAEEQGY 35 (98)
T ss_dssp EEEEEETTSCHHHHHHHTTC
T ss_pred EEEEeCCCCCHHHHHHHcCC
Confidence 46889999999999999884
No 35
>3slu_A M23 peptidase domain protein; outer membrane, hydrolase; 2.41A {Neisseria meningitidis}
Probab=26.60 E-value=96 Score=25.57 Aligned_cols=35 Identities=14% Similarity=0.115 Sum_probs=26.1
Q ss_pred CchHHHHHHHhCCh--------hhhhhCCCCCCCCCcCCCcEEEeC
Q 035523 84 GETLHTISDKCGDP--------FIVEHNPHIHDPDDLFPGLVIKIT 121 (125)
Q Consensus 84 GDTL~~IA~r~gd~--------~il~~Np~I~nP~~I~PGQvIrI~ 121 (125)
.++||..+.+.|.+ .|+++. |+= .+|.+|+.++|.
T Consensus 117 ~~Sl~~a~~~agl~~~~~~~l~~i~~~~--idf-~~l~~GD~f~v~ 159 (371)
T 3slu_A 117 KTSARGSLARAEVPVEIRESLSGIFAGR--FSL-DGLKEGDAVRLI 159 (371)
T ss_dssp SSCHHHHHHHTTCCHHHHHHHHHHHTTT--CCT-TCCCTTCEEEEE
T ss_pred eccHHHHHHHcCCCHHHHHHHHHHHccC--cCH-HHcCCCCEEEEE
Confidence 89999999999953 155443 432 479999999883
No 36
>2lfc_A Fumarate reductase, flavoprotein subunit; structural genomics, northeast structural genomics consortiu PSI-biology; NMR {Lactobacillus plantarum}
Probab=26.16 E-value=32 Score=24.38 Aligned_cols=17 Identities=18% Similarity=0.155 Sum_probs=15.0
Q ss_pred EeccCchHHHHHHHhCC
Q 035523 80 VVGEGETLHTISDKCGD 96 (125)
Q Consensus 80 ~Vk~GDTL~~IA~r~gd 96 (125)
.++++|||-+.|++.|.
T Consensus 91 ~~~kadTleeLA~~~gi 107 (160)
T 2lfc_A 91 PVFVKGSLESAAEQAGI 107 (160)
T ss_dssp CSEECSSHHHHHHHHTC
T ss_pred ceEecCCHHHHHHHhCC
Confidence 46789999999999994
No 37
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=25.89 E-value=46 Score=21.49 Aligned_cols=47 Identities=13% Similarity=0.046 Sum_probs=36.9
Q ss_pred ceEEec--cCchHHHHHHHhC-C-hh--hhhhCCCCCCC-----CCcCCCcEEEeCCC
Q 035523 77 EIYVVG--EGETLHTISDKCG-D-PF--IVEHNPHIHDP-----DDLFPGLVIKITAP 123 (125)
Q Consensus 77 ~~Y~Vk--~GDTL~~IA~r~g-d-~~--il~~Np~I~nP-----~~I~PGQvIrI~~~ 123 (125)
+.+.+. .|-||.++-...| + +. .++.|..|-.+ ..+..|++|-|-++
T Consensus 8 e~~e~~~~~~~Tl~~LL~~l~~~~~~~vAVavNg~iVpr~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 8 KPSTVDGAESLNVTELLSALKVAQAEYVTVELNGEVLEREAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp EEEECSSCSCEEHHHHHHHHTCSCTTTCCEEETTEECCTTHHHHCEECSSBCEEECCC
T ss_pred EEEEcCCCCCCcHHHHHHHcCCCCCCcEEEEECCEECChHHcCcccCCCCCEEEEEee
Confidence 457888 8999999999988 4 32 78889877555 36999999988654
No 38
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.55 E-value=45 Score=22.15 Aligned_cols=19 Identities=16% Similarity=0.045 Sum_probs=16.9
Q ss_pred eEEeccCchHHHHHHHhCC
Q 035523 78 IYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 78 ~Y~Vk~GDTL~~IA~r~gd 96 (125)
.+.|.+|+||.+.+.+.|.
T Consensus 14 ~~~~~~g~tll~a~~~~gi 32 (104)
T 3lxf_A 14 EIQAEPGLSLMEALRDAGI 32 (104)
T ss_dssp EEECCTTSBHHHHHHHTTC
T ss_pred EEEECCCChHHHHHHHcCC
Confidence 5788999999999999874
No 39
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.45 E-value=62 Score=19.87 Aligned_cols=18 Identities=11% Similarity=0.285 Sum_probs=14.4
Q ss_pred CCCCcCCCcEEEeCCCCC
Q 035523 108 DPDDLFPGLVIKITAPPF 125 (125)
Q Consensus 108 nP~~I~PGQvIrI~~~~~ 125 (125)
+...+.|||.++|...+|
T Consensus 4 ~~~~f~~GD~V~V~~Gpf 21 (59)
T 2e6z_A 4 GSSGFQPGDNVEVCEGEL 21 (59)
T ss_dssp CCSSCCTTSEEEECSSTT
T ss_pred ccccCCCCCEEEEeecCC
Confidence 455688999999988776
No 40
>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A
Probab=23.43 E-value=55 Score=22.85 Aligned_cols=19 Identities=26% Similarity=0.296 Sum_probs=17.5
Q ss_pred eEEeccCchHHHHHHHhCC
Q 035523 78 IYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 78 ~Y~Vk~GDTL~~IA~r~gd 96 (125)
.+.|.+|+||.+.+++.|.
T Consensus 39 ~v~v~~g~tlL~aa~~~Gi 57 (128)
T 1doi_A 39 SLEVNEGEYILEAAEAQGY 57 (128)
T ss_dssp EEECCTTSCHHHHHHHTTC
T ss_pred EEEECCCCcHHHHHHHcCC
Confidence 6899999999999999884
No 41
>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1
Probab=22.86 E-value=33 Score=22.12 Aligned_cols=20 Identities=20% Similarity=0.202 Sum_probs=17.3
Q ss_pred eEEeccCchHHHHHHHhCCh
Q 035523 78 IYVVGEGETLHTISDKCGDP 97 (125)
Q Consensus 78 ~Y~Vk~GDTL~~IA~r~gd~ 97 (125)
.+.|.+|+||.+.+++.|.+
T Consensus 13 ~~~~~~g~tll~a~~~~gi~ 32 (93)
T 1l5p_A 13 QLKFEDDQTLFTVLTEAGLM 32 (93)
T ss_dssp EEECCTTEEHHHHHHTTTSS
T ss_pred EEEECCCChHHHHHHHcCCC
Confidence 57899999999999998743
No 42
>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}
Probab=20.60 E-value=62 Score=22.61 Aligned_cols=20 Identities=20% Similarity=0.112 Sum_probs=17.5
Q ss_pred ceEEeccCchHHHHHHHhCC
Q 035523 77 EIYVVGEGETLHTISDKCGD 96 (125)
Q Consensus 77 ~~Y~Vk~GDTL~~IA~r~gd 96 (125)
....|.+|+||.+.+.+.|.
T Consensus 34 ~~v~~~~G~tLL~aa~~~gi 53 (126)
T 3hui_A 34 RTVEVEEGATVMEAAIRNAI 53 (126)
T ss_dssp EEEEEETTSBHHHHHHTTTC
T ss_pred EEEEECCCCcHHHHHHHcCC
Confidence 46889999999999999874
No 43
>2wfw_A ARC; ATP-binding protein, proteasomal atpases, PAN, AAA, ATP-binding, nucleotide-binding; 1.60A {Rhodococcus erythropolis} PDB: 3fp9_A
Probab=20.22 E-value=51 Score=24.84 Aligned_cols=24 Identities=25% Similarity=0.487 Sum_probs=19.9
Q ss_pred hhhhCCCCCCCCCcCCCcEEEeCCC
Q 035523 99 IVEHNPHIHDPDDLFPGLVIKITAP 123 (125)
Q Consensus 99 il~~Np~I~nP~~I~PGQvIrI~~~ 123 (125)
.+.--|+| |++.+.|||.++|...
T Consensus 32 rv~vsP~v-d~~~L~~Gq~V~LNEa 55 (153)
T 2wfw_A 32 RLTCSPNI-DTDTLALGQTVRLNEA 55 (153)
T ss_dssp EECBCTTC-CGGGCCTTCEEEECTT
T ss_pred EEEeCCCC-CHHHCCCCCEEEECCc
Confidence 55666778 8999999999999764
Done!