BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035526
(557 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3T6B|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6B|B Chain B, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 2.4 Angstroms
pdb|3T6J|A Chain A, Structure Of Human Dppiii In Complex With The Opioid
Peptide Tynorphin, At 3.0 Angstroms
Length = 726
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 409 LPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIG-----IQTSPFPPCVIEYYPK 463
LP D GV S + C F + S TE+L Y++ R W G +QTSP P + +
Sbjct: 8 LPNDIGV--SSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSR 65
Query: 464 L 464
L
Sbjct: 66 L 66
>pdb|3FVY|A Chain A, Crystal Structure Of Human Dipeptidyl Peptidase Iii
Length = 728
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 7/61 (11%)
Query: 409 LPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIG-----IQTSPFPPCVIEYYPK 463
LP D GV S + C F + S TE+L Y++ R W G +QTSP P + +
Sbjct: 10 LPNDIGV--SSLDCREAFRLLSPTERLYAYHLSRAAWYGGLAVLLQTSPEAPYIYALLSR 67
Query: 464 L 464
L
Sbjct: 68 L 68
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 32.7 bits (73), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 10/57 (17%)
Query: 233 SVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSM 289
+V+S MD VYV+GG GS K ++ V+ P W ++A M+ ARS+
Sbjct: 143 TVLSHMDLVYVIGG----------KGSDRKCLNKMCVYDPKKFEWKELAPMQTARSL 189
>pdb|2OOD|A Chain A, Crystal Structure Of Guanine Deaminase From Bradyrhizobium
Japonicum
Length = 475
Score = 32.3 bits (72), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 27/52 (51%), Gaps = 3/52 (5%)
Query: 211 LDVSQDQWHRIDASI---LKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGS 259
L + D HR+ S + G FS +S++DD Y VG C++ G +D S
Sbjct: 309 LGRATDPEHRVKXSFGTDVGGGNRFSXISVLDDAYKVGXCNNTLLDGSIDPS 360
>pdb|1QU0|A Chain A, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|B Chain B, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|C Chain C, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
pdb|1QU0|D Chain D, Crystal Structure Of The Fifth Laminin G-like Module Of
The Mouse Laminin Alpha2 Chain
Length = 191
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 37/98 (37%), Gaps = 19/98 (19%)
Query: 217 QWHRIDASILKGRFMFSV----------------VSIMDDVYVVGGCSSLTSFGRVDGSS 260
QWH++ A +K R V D V+V G L FG
Sbjct: 93 QWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTNDPVFVGGFPGGLNQFGLTTNIR 152
Query: 261 FKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVS 298
F+ R L LTK K + +A+++ + G+ VS
Sbjct: 153 FRGCIRSL---KLTKGTGKPLEVNFAKALELRGVQPVS 187
>pdb|1OKQ|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair, Ca1 Site Mutant
Length = 394
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 196 FGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSV----------------VSIMD 239
F A+ D G + QWH++ A +K R V D
Sbjct: 280 FTAIYDAEIPGHM-----CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTND 334
Query: 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVS 298
V+V G L FG F+ R L LTK K + +A+++ + G+ VS
Sbjct: 335 PVFVGGFPGGLNQFGLTTNIRFRGCIRSL---KLTKGTGKPLEVNFAKALELRGVQPVS 390
>pdb|1DYK|A Chain A, Laminin Alpha 2 Chain Lg4-5 Domain Pair
Length = 394
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 29/119 (24%), Positives = 43/119 (36%), Gaps = 24/119 (20%)
Query: 196 FGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSV----------------VSIMD 239
F A+ D G + QWH++ A +K R V D
Sbjct: 280 FTAIYDAEIPGHM-----CNGQWHKVTAKKIKNRLELVVDGNQVDAQSPNSASTSADTND 334
Query: 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVS 298
V+V G L FG F+ R L LTK K + +A+++ + G+ VS
Sbjct: 335 PVFVGGFPGGLNQFGLTTNIRFRGCIRSL---KLTKGTGKPLEVNFAKALELRGVQPVS 390
>pdb|2VPJ|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl12
Length = 301
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 369 AKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKW 403
A+ VL+ VGG GS P+D E YD + +W
Sbjct: 9 ARLGANEVLLVVGGFGSQQSPIDVVEKYDPKTQEW 43
>pdb|3DH0|A Chain A, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
pdb|3DH0|B Chain B, Crystal Structure Of A Sam Dependent Methyltransferase
From Aquifex Aeolicus
Length = 219
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 42/91 (46%), Gaps = 12/91 (13%)
Query: 95 YKPFCGSEEIGVGVDCFSYGVKEKF----WKKSNSKNLELQDSVRNSRMHIFLPDDTLEM 150
Y P+ S+ +G ++ V+E+ W+K N L+ + +++ I LPD+T++
Sbjct: 51 YLPYL-SKMVGEKGKVYAIDVQEEMVNYAWEKVNKLGLKNVEVLKSEENKIPLPDNTVDF 109
Query: 151 CLVRF-------PLTSLMNARLVCKKWRYLT 174
+ F PL L + V K + YL
Sbjct: 110 IFMAFTFHELSEPLKFLEELKRVAKPFAYLA 140
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.138 0.441
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 17,115,746
Number of Sequences: 62578
Number of extensions: 725299
Number of successful extensions: 1334
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1326
Number of HSP's gapped (non-prelim): 16
length of query: 557
length of database: 14,973,337
effective HSP length: 104
effective length of query: 453
effective length of database: 8,465,225
effective search space: 3834746925
effective search space used: 3834746925
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)