Query 035526
Match_columns 557
No_of_seqs 423 out of 2854
Neff 7.9
Searched_HMMs 46136
Date Fri Mar 29 03:44:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035526.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035526hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4441 Proteins containing BT 100.0 1.2E-54 2.6E-59 476.6 17.4 425 20-541 100-561 (571)
2 PHA02713 hypothetical protein; 100.0 7.9E-48 1.7E-52 424.0 16.1 410 22-538 91-545 (557)
3 PHA03098 kelch-like protein; P 100.0 1.2E-40 2.7E-45 367.7 15.6 422 20-539 71-524 (534)
4 PHA02790 Kelch-like protein; P 100.0 8.5E-40 1.8E-44 355.2 12.4 359 20-532 86-476 (480)
5 KOG4441 Proteins containing BT 100.0 3E-36 6.4E-41 331.3 23.9 246 157-450 300-555 (571)
6 PHA02713 hypothetical protein; 100.0 5.5E-35 1.2E-39 322.2 23.1 249 159-450 273-542 (557)
7 PLN02153 epithiospecifier prot 100.0 3.6E-33 7.9E-38 291.2 29.0 287 168-523 7-338 (341)
8 TIGR03547 muta_rot_YjhT mutatr 100.0 1.3E-31 2.8E-36 280.0 27.9 262 188-521 15-343 (346)
9 TIGR03548 mutarot_permut cycli 100.0 2.2E-31 4.7E-36 275.7 27.6 198 189-433 12-233 (323)
10 PLN02193 nitrile-specifier pro 100.0 3.4E-31 7.4E-36 287.1 29.9 280 168-521 151-465 (470)
11 PRK14131 N-acetylneuraminic ac 100.0 3.9E-31 8.4E-36 279.3 26.8 281 168-521 17-365 (376)
12 PLN02153 epithiospecifier prot 100.0 2.2E-30 4.8E-35 270.2 28.5 243 213-534 4-292 (341)
13 PHA03098 kelch-like protein; P 100.0 1.5E-30 3.3E-35 287.4 25.8 243 163-452 269-522 (534)
14 PLN02193 nitrile-specifier pro 100.0 2.6E-29 5.7E-34 272.4 31.6 267 190-537 120-421 (470)
15 TIGR03547 muta_rot_YjhT mutatr 100.0 7E-29 1.5E-33 259.4 26.1 244 221-541 1-313 (346)
16 TIGR03548 mutarot_permut cycli 100.0 1.1E-27 2.4E-32 248.0 25.8 243 228-538 3-291 (323)
17 PRK14131 N-acetylneuraminic ac 100.0 4.6E-27 9.9E-32 248.3 24.4 250 217-542 18-336 (376)
18 PHA02790 Kelch-like protein; P 99.9 8.8E-25 1.9E-29 237.7 19.6 190 157-406 286-477 (480)
19 KOG4693 Uncharacterized conser 99.9 8.5E-23 1.9E-27 194.6 20.4 243 227-510 12-313 (392)
20 KOG4693 Uncharacterized conser 99.9 5.9E-23 1.3E-27 195.7 18.8 238 189-469 22-310 (392)
21 KOG0379 Kelch repeat-containin 99.9 3.5E-20 7.5E-25 201.1 23.8 219 190-452 70-312 (482)
22 KOG0379 Kelch repeat-containin 99.9 5.7E-20 1.2E-24 199.4 23.7 235 225-537 58-312 (482)
23 KOG4152 Host cell transcriptio 99.9 8.5E-21 1.8E-25 194.3 15.5 275 169-509 18-342 (830)
24 KOG1230 Protein containing rep 99.8 1.5E-19 3.3E-24 181.7 17.9 226 190-449 78-348 (521)
25 KOG1230 Protein containing rep 99.8 1.5E-17 3.3E-22 167.4 17.5 240 225-533 64-347 (521)
26 KOG4152 Host cell transcriptio 99.6 2.7E-15 5.9E-20 154.3 16.1 243 159-433 58-342 (830)
27 COG3055 Uncharacterized protei 99.6 3.2E-13 6.8E-18 135.0 22.6 281 189-521 45-371 (381)
28 COG3055 Uncharacterized protei 99.2 3.8E-10 8.1E-15 113.2 14.8 220 220-539 29-268 (381)
29 PF13964 Kelch_6: Kelch motif 99.2 6.9E-11 1.5E-15 87.4 6.1 50 228-287 1-50 (50)
30 PF01344 Kelch_1: Kelch motif; 98.9 2.5E-09 5.4E-14 77.8 5.5 47 228-284 1-47 (47)
31 PF13964 Kelch_6: Kelch motif 98.9 4.5E-09 9.7E-14 77.6 6.5 50 353-413 1-50 (50)
32 TIGR01640 F_box_assoc_1 F-box 98.7 6.1E-07 1.3E-11 88.3 18.2 125 376-537 56-188 (230)
33 PF01344 Kelch_1: Kelch motif; 98.7 1.8E-08 3.8E-13 73.3 4.2 47 353-410 1-47 (47)
34 PF07646 Kelch_2: Kelch motif; 98.6 9.5E-08 2.1E-12 70.2 6.0 49 228-284 1-49 (49)
35 PF13418 Kelch_4: Galactose ox 98.6 6.1E-08 1.3E-12 71.2 4.7 47 228-284 1-48 (49)
36 KOG2437 Muskelin [Signal trans 98.5 5.7E-08 1.2E-12 100.9 4.2 179 190-444 272-474 (723)
37 PF13415 Kelch_3: Galactose ox 98.5 1.9E-07 4.1E-12 68.6 5.6 48 238-294 1-48 (49)
38 smart00612 Kelch Kelch domain. 98.4 3.1E-07 6.7E-12 66.2 4.8 46 240-296 1-46 (47)
39 PF07646 Kelch_2: Kelch motif; 98.4 6E-07 1.3E-11 65.9 6.1 47 353-410 1-49 (49)
40 KOG2437 Muskelin [Signal trans 98.4 3.3E-07 7.2E-12 95.3 4.5 168 316-521 274-468 (723)
41 smart00612 Kelch Kelch domain. 98.3 7.7E-07 1.7E-11 64.1 5.1 47 376-424 1-47 (47)
42 PF13418 Kelch_4: Galactose ox 98.3 5.2E-07 1.1E-11 66.2 3.8 49 353-411 1-49 (49)
43 PF13415 Kelch_3: Galactose ox 98.3 1.7E-06 3.7E-11 63.5 5.4 47 190-237 1-49 (49)
44 PF07250 Glyoxal_oxid_N: Glyox 98.0 0.00068 1.5E-08 66.9 18.8 160 266-466 47-223 (243)
45 PF13854 Kelch_5: Kelch motif 97.8 4.8E-05 1E-09 53.8 5.3 40 225-275 2-42 (42)
46 PLN02772 guanylate kinase 97.7 0.00019 4.2E-09 75.1 10.7 58 228-295 24-84 (398)
47 PLN02772 guanylate kinase 97.7 0.0003 6.4E-09 73.7 10.7 80 352-442 23-109 (398)
48 TIGR01640 F_box_assoc_1 F-box 97.6 0.0069 1.5E-07 59.4 20.0 193 206-443 14-230 (230)
49 PF13854 Kelch_5: Kelch motif 97.4 0.00028 6E-09 49.9 5.1 41 350-401 1-42 (42)
50 PF07250 Glyoxal_oxid_N: Glyox 97.4 0.002 4.4E-08 63.6 12.6 150 207-412 47-211 (243)
51 PF12937 F-box-like: F-box-lik 97.1 0.00022 4.8E-09 51.7 1.3 40 140-179 1-40 (47)
52 PLN03215 ascorbic acid mannose 96.9 0.14 3.1E-06 53.6 20.3 37 140-176 4-41 (373)
53 smart00256 FBOX A Receptor for 96.6 0.00079 1.7E-08 46.8 0.9 38 143-180 1-38 (41)
54 PRK11138 outer membrane biogen 96.6 1.4 3E-05 46.9 26.1 259 189-532 68-361 (394)
55 PF07893 DUF1668: Protein of u 96.4 0.092 2E-06 55.0 15.5 54 401-454 158-220 (342)
56 PF00646 F-box: F-box domain; 96.4 0.0012 2.7E-08 47.8 1.0 40 141-180 4-43 (48)
57 PF03089 RAG2: Recombination a 95.8 0.29 6.3E-06 48.7 14.2 42 390-432 130-173 (337)
58 PF07893 DUF1668: Protein of u 95.6 1 2.2E-05 47.1 18.8 54 189-249 75-128 (342)
59 PF13360 PQQ_2: PQQ-like domai 94.7 4.3 9.4E-05 39.2 22.2 63 189-278 35-101 (238)
60 PRK11138 outer membrane biogen 94.2 9.1 0.0002 40.6 22.6 65 376-447 162-231 (394)
61 TIGR03300 assembly_YfgL outer 94.0 9.3 0.0002 40.1 25.1 59 376-447 243-305 (377)
62 TIGR03300 assembly_YfgL outer 93.9 9.6 0.00021 40.0 26.9 56 392-447 201-267 (377)
63 PRK13684 Ycf48-like protein; P 93.5 11 0.00024 39.3 24.0 109 397-508 200-322 (334)
64 PF12768 Rax2: Cortical protei 93.3 3.1 6.6E-05 42.3 15.2 107 332-450 14-130 (281)
65 PF12768 Rax2: Cortical protei 92.9 1.5 3.2E-05 44.5 12.3 71 378-450 2-81 (281)
66 TIGR03866 PQQ_ABC_repeats PQQ- 92.9 10 0.00023 37.3 23.4 64 192-279 2-67 (300)
67 PF08450 SGL: SMP-30/Gluconola 90.3 19 0.00041 35.2 20.3 196 190-449 11-221 (246)
68 PF13360 PQQ_2: PQQ-like domai 90.1 18 0.0004 34.7 19.4 57 392-448 87-149 (238)
69 PF03089 RAG2: Recombination a 90.1 4.1 8.9E-05 40.8 11.4 75 376-450 40-128 (337)
70 PRK11028 6-phosphogluconolacto 89.7 26 0.00057 35.9 26.4 141 391-538 148-318 (330)
71 PF08268 FBA_3: F-box associat 88.7 2.6 5.7E-05 37.2 8.5 80 420-533 2-87 (129)
72 KOG0310 Conserved WD40 repeat- 87.1 9.2 0.0002 40.9 12.3 62 376-444 167-228 (487)
73 TIGR02658 TTQ_MADH_Hv methylam 86.4 47 0.001 34.9 21.7 88 190-287 12-100 (352)
74 PRK13684 Ycf48-like protein; P 85.0 52 0.0011 34.2 18.2 170 207-442 153-332 (334)
75 PF10282 Lactonase: Lactonase, 84.5 55 0.0012 34.0 22.7 68 376-450 157-233 (345)
76 smart00284 OLF Olfactomedin-li 83.7 50 0.0011 33.0 16.9 77 190-285 34-114 (255)
77 KOG2120 SCF ubiquitin ligase, 83.4 0.45 9.8E-06 48.0 0.7 39 140-178 98-136 (419)
78 PLN00033 photosystem II stabil 80.0 90 0.0019 33.4 24.5 125 375-506 250-388 (398)
79 PF05096 Glu_cyclase_2: Glutam 79.2 33 0.00071 34.4 12.1 58 376-442 101-158 (264)
80 KOG0310 Conserved WD40 repeat- 78.4 37 0.0008 36.5 12.7 56 376-439 251-306 (487)
81 KOG2055 WD40 repeat protein [G 77.9 20 0.00043 38.3 10.5 61 376-443 316-376 (514)
82 PF14870 PSII_BNR: Photosynthe 77.1 93 0.002 32.0 23.2 250 190-507 27-294 (302)
83 TIGR02800 propeller_TolB tol-p 75.8 1.1E+02 0.0024 32.2 19.6 56 392-449 303-362 (417)
84 TIGR03866 PQQ_ABC_repeats PQQ- 73.5 95 0.0021 30.3 15.8 61 376-444 86-148 (300)
85 PF13570 PQQ_3: PQQ-like domai 71.6 8.8 0.00019 26.2 4.3 24 419-442 17-40 (40)
86 PF08268 FBA_3: F-box associat 71.4 36 0.00078 29.8 9.3 80 190-280 5-87 (129)
87 PRK04792 tolB translocation pr 71.3 1.6E+02 0.0034 32.0 19.2 62 205-282 241-303 (448)
88 PF05096 Glu_cyclase_2: Glutam 67.5 1.4E+02 0.0031 30.0 17.5 78 190-289 55-132 (264)
89 TIGR03075 PQQ_enz_alc_DH PQQ-d 66.1 1E+02 0.0022 34.3 13.5 62 376-444 71-141 (527)
90 KOG2997 F-box protein FBX9 [Ge 63.5 2.7 5.8E-05 42.8 0.4 44 140-183 107-155 (366)
91 KOG2055 WD40 repeat protein [G 63.1 1.1E+02 0.0024 32.9 12.0 56 206-278 280-338 (514)
92 KOG0289 mRNA splicing factor [ 62.9 1.7E+02 0.0037 31.3 13.2 32 376-413 445-476 (506)
93 TIGR03075 PQQ_enz_alc_DH PQQ-d 61.8 1.8E+02 0.0038 32.4 14.4 56 392-447 131-197 (527)
94 PF02191 OLF: Olfactomedin-lik 61.5 1.8E+02 0.0039 29.0 18.1 196 189-441 29-247 (250)
95 PF06433 Me-amine-dh_H: Methyl 59.7 1.1E+02 0.0023 32.0 11.2 69 375-445 250-324 (342)
96 PLN02919 haloacid dehalogenase 59.1 4.1E+02 0.0089 32.4 22.9 64 375-444 815-891 (1057)
97 smart00284 OLF Olfactomedin-li 57.1 1.6E+02 0.0034 29.5 11.5 73 376-452 36-113 (255)
98 PLN03215 ascorbic acid mannose 56.6 2.7E+02 0.0058 29.5 13.8 54 393-447 288-352 (373)
99 KOG0281 Beta-TrCP (transducin 56.3 3.8 8.3E-05 42.0 0.1 42 138-179 73-118 (499)
100 cd00216 PQQ_DH Dehydrogenases 55.8 3.1E+02 0.0067 30.0 17.4 69 189-280 60-137 (488)
101 KOG0274 Cdc4 and related F-box 55.6 1.9E+02 0.0041 32.3 13.2 47 132-178 100-146 (537)
102 PF03178 CPSF_A: CPSF A subuni 54.2 2.5E+02 0.0055 28.5 14.5 77 191-286 42-129 (321)
103 PRK04922 tolB translocation pr 48.3 3.7E+02 0.0081 28.7 19.6 61 205-281 227-288 (433)
104 PRK11028 6-phosphogluconolacto 47.8 3.2E+02 0.0069 27.8 19.6 69 376-450 188-269 (330)
105 PF07707 BACK: BTB And C-termi 47.6 1.8 3.9E-05 36.2 -3.3 32 119-150 68-101 (103)
106 cd00200 WD40 WD40 domain, foun 47.2 2.4E+02 0.0053 26.3 23.2 53 391-445 157-211 (289)
107 PRK00178 tolB translocation pr 46.8 3.8E+02 0.0083 28.4 19.8 58 391-450 311-372 (430)
108 cd00094 HX Hemopexin-like repe 44.6 2.8E+02 0.006 26.2 17.4 58 375-444 111-178 (194)
109 PF12217 End_beta_propel: Cata 44.1 3.5E+02 0.0076 27.2 15.0 43 229-281 191-233 (367)
110 smart00564 PQQ beta-propeller 42.2 57 0.0012 20.7 4.1 25 420-444 3-27 (33)
111 TIGR03074 PQQ_membr_DH membran 40.9 5.9E+02 0.013 29.8 14.6 35 232-283 188-224 (764)
112 KOG1332 Vesicle coat complex C 37.1 2.1E+02 0.0045 28.5 8.5 53 397-450 241-296 (299)
113 COG4257 Vgb Streptogramin lyas 37.1 4.7E+02 0.01 26.7 16.6 93 410-504 186-291 (353)
114 KOG0289 mRNA splicing factor [ 36.9 5.7E+02 0.012 27.6 16.0 60 392-453 412-474 (506)
115 PF08450 SGL: SMP-30/Gluconola 36.9 2.3E+02 0.005 27.4 9.4 67 375-452 12-79 (246)
116 PF03178 CPSF_A: CPSF A subuni 35.3 4.9E+02 0.011 26.4 15.7 63 391-454 107-172 (321)
117 PF10282 Lactonase: Lactonase, 34.6 5.3E+02 0.012 26.6 17.1 69 376-450 258-333 (345)
118 cd00200 WD40 WD40 domain, foun 34.6 3.8E+02 0.0083 24.9 19.8 59 376-442 190-250 (289)
119 smart00875 BACK BTB And C-term 34.3 7.6 0.00016 31.9 -1.5 30 119-148 68-98 (101)
120 TIGR03074 PQQ_membr_DH membran 32.7 7.5E+02 0.016 29.0 13.8 62 376-444 196-281 (764)
121 PRK05137 tolB translocation pr 32.3 6.5E+02 0.014 26.9 21.6 61 206-282 226-287 (435)
122 KOG2321 WD40 repeat protein [G 30.3 3.6E+02 0.0079 30.1 9.8 65 190-277 145-209 (703)
123 PF14870 PSII_BNR: Photosynthe 30.0 6.2E+02 0.014 26.0 17.2 171 207-439 125-302 (302)
124 PTZ00421 coronin; Provisional 29.9 7.9E+02 0.017 27.1 20.7 25 424-448 272-297 (493)
125 PF02191 OLF: Olfactomedin-lik 29.7 5.4E+02 0.012 25.6 10.6 71 376-452 32-108 (250)
126 TIGR02658 TTQ_MADH_Hv methylam 28.2 4.2E+02 0.0092 27.8 9.9 67 376-446 14-90 (352)
127 KOG1036 Mitotic spindle checkp 27.2 7E+02 0.015 25.6 14.0 156 206-428 35-203 (323)
128 COG4257 Vgb Streptogramin lyas 26.6 1.3E+02 0.0028 30.5 5.4 61 205-281 253-313 (353)
129 PLN00033 photosystem II stabil 26.1 8.3E+02 0.018 26.1 21.2 29 421-449 336-364 (398)
130 PTZ00420 coronin; Provisional 25.7 9.9E+02 0.022 26.9 16.9 27 423-449 274-301 (568)
131 KOG0316 Conserved WD40 repeat- 25.1 6.9E+02 0.015 24.9 11.7 63 376-445 114-177 (307)
132 KOG0291 WD40-repeat-containing 23.2 1.2E+03 0.026 27.1 22.0 63 376-447 405-472 (893)
133 PRK01742 tolB translocation pr 22.2 9.7E+02 0.021 25.5 17.8 60 206-281 228-288 (429)
134 PLN00181 protein SPA1-RELATED; 22.0 1.3E+03 0.028 26.9 19.7 62 376-443 673-740 (793)
135 COG4447 Uncharacterized protei 21.3 8.9E+02 0.019 24.8 12.4 253 190-507 54-322 (339)
136 KOG2321 WD40 repeat protein [G 21.3 1.2E+03 0.026 26.2 13.9 94 336-444 157-261 (703)
137 KOG0646 WD40 repeat protein [G 20.8 1.1E+03 0.024 25.6 12.6 28 417-444 282-310 (476)
138 cd00094 HX Hemopexin-like repe 20.8 7E+02 0.015 23.3 11.0 61 375-444 63-130 (194)
139 PF06433 Me-amine-dh_H: Methyl 20.6 4E+02 0.0087 27.9 7.8 70 190-278 249-325 (342)
140 KOG0296 Angio-associated migra 20.5 1E+03 0.022 25.1 15.0 61 376-444 161-223 (399)
No 1
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=1.2e-54 Score=476.65 Aligned_cols=425 Identities=19% Similarity=0.250 Sum_probs=351.8
Q ss_pred hhhhHHHHHHHH---HHHhccCCCCCCCCCcccccccceeeeee--ecCCCceeeeccCCCcCCCCCcccCCCccccCCC
Q 035526 20 LSVSKRLVRSVS---RKLRNKNLRNYDGDDEDDVKGVSLKCLTL--YGRGGGCKVGAETGEECGDSSSRRRSSASEEGKG 94 (557)
Q Consensus 20 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (557)
+.|+..+|++|+ .+|++..++.+|++|+. ++.+.-|||.+ ||..++|.-+.....+|+..++.+ ....+|
T Consensus 100 i~i~~~nVq~ll~aA~~lQi~~v~~~C~~fL~-~~l~~~Nclgi~~~a~~~~~~~L~~~a~~~i~~~F~~-v~~~ee--- 174 (571)
T KOG4441|consen 100 LEISEDNVQELLEAASLLQIPEVVDACCEFLE-SQLDPSNCLGIRRFAELHSCTELLEVADEYILQHFAE-VSKTEE--- 174 (571)
T ss_pred EEechHhHHHHHHHHHHhhhHHHHHHHHHHHH-hcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH-HhccHH---
Confidence 568899999999 88999999999999999 78899999987 999999998888888898888888 555555
Q ss_pred CCCCCCCcccc---------e-eeeeeeccceeceeeecCCc--cccccccccccCCCCCCCHHHHHHHHhcCCccchhh
Q 035526 95 YKPFCGSEEIG---------V-GVDCFSYGVKEKFWKKSNSK--NLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMN 162 (557)
Q Consensus 95 ~~~~c~~e~~~---------~-~~~~~~~~~~~~~W~~~~~~--~~~l~~l~~~~r~~~~lp~dl~~~il~rLP~~sl~~ 162 (557)
|+.+.-++... . .-+.|. ..+.|++||.+ ..|++++++++|++++.|.++.+.+.. ..+++
T Consensus 175 fl~L~~~~l~~ll~~d~l~v~~E~~vf~---a~~~Wv~~d~~~R~~~~~~ll~~vr~~ll~~~~l~~~v~~----~~~~~ 247 (571)
T KOG4441|consen 175 FLLLSLEELIGLLSSDDLNVDSEEEVFE---AAMRWVKHDFEEREEHLPALLEAVRLPLLPPQFLVEIVES----EPLIK 247 (571)
T ss_pred hhCCCHHHHHhhccccCCCcCCHHHHHH---HHHHHHhcCHhhHHHHHHHHHHhcCccCCCHHHHHHHHhh----hhhhc
Confidence 55533222211 0 011232 23569999987 589999999999988777777776654 33444
Q ss_pred hhhccc-------ccccccCChhhhhhhhccc--cCCCeEEEEeeecC-CcccceEEEeeCCCCceEEccCCCcCcceee
Q 035526 163 ARLVCK-------KWRYLTTTPRFLQMRREGL--HQNPWLFLFGAVKD-GYYSGEIHALDVSQDQWHRIDASILKGRFMF 232 (557)
Q Consensus 163 ~~~vck-------~W~~l~~sp~~~~~~~~~~--~~~~~L~v~GG~~~-~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~ 232 (557)
....|+ +|+.+.......+.++... ...+.||++||... ....+.+..|||.++.|..+++||.+ |..+
T Consensus 248 ~~~~c~~~l~ea~~~~~~~~~~~~~~~~~t~~r~~~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~-r~~~ 326 (571)
T KOG4441|consen 248 RDSACRDLLDEAKKYHLLPQRRPVMQSPRTRPRRSVSGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSP-RCRV 326 (571)
T ss_pred cCHHHHHHHHHHHHHhhCcccCccccCCCcccCcCCCCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcc-cccc
Confidence 444444 4555544322222222222 34788999999875 56789999999999999999999976 9999
Q ss_pred EEEEECCEEEEEcccC-CCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCC
Q 035526 233 SVVSIMDDVYVVGGCS-SLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQ 311 (557)
Q Consensus 233 s~a~~~~~IYViGG~~-~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~ 311 (557)
++++++|+|||+||.+ +. ...+++++|||.+++|+++|+|+.+|..+++++++ |
T Consensus 327 ~~~~~~~~lYv~GG~~~~~-----------~~l~~ve~YD~~~~~W~~~a~M~~~R~~~~v~~l~--g------------ 381 (571)
T KOG4441|consen 327 GVAVLNGKLYVVGGYDSGS-----------DRLSSVERYDPRTNQWTPVAPMNTKRSDFGVAVLD--G------------ 381 (571)
T ss_pred cEEEECCEEEEEccccCCC-----------cccceEEEecCCCCceeccCCccCccccceeEEEC--C------------
Confidence 9999999999999998 44 36789999999999999999999999998888887 3
Q ss_pred CCCCcEEEEcccccccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCC
Q 035526 312 DRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEP 389 (557)
Q Consensus 312 ~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~ 389 (557)
.||++||.+ +...++++|+|||.+|+|+. +|+.+|++++++++++ +||++||.++....
T Consensus 382 ----~iYavGG~d----g~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g-----------~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 382 ----KLYAVGGFD----GEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGG-----------KLYIIGGGDGSSNC 442 (571)
T ss_pred ----EEEEEeccc----cccccccEEEecCCCCcccccCCCCcceeeeEEEEECC-----------EEEEEcCcCCCccc
Confidence 999999986 88899999999999999999 7888999999999997 99999999877668
Q ss_pred CceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC------eEEEEECCCCcEEeccCCCCCCcccccCCE
Q 035526 390 LDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE------KLAGYYIERGFWIGIQTSPFPPCVIEYYPK 463 (557)
Q Consensus 390 l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~------~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~ 463 (557)
++++|+|||.+|+|+.+++|+.+|.+++ +++++++||++||.+ .+++|||++++|+.+.+|+.++
T Consensus 443 l~sve~YDP~t~~W~~~~~M~~~R~~~g-~a~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~r-------- 513 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPMNTRRSGFG-VAVLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPR-------- 513 (571)
T ss_pred cceEEEEcCCCCceeecCCcccccccce-EEEECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccc--------
Confidence 9999999999999999999999999876 578899999999974 5999999999999998876555
Q ss_pred EEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCceecccCCcCcc
Q 035526 464 LVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRNHMDYE 541 (557)
Q Consensus 464 lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~~~~~~ 541 (557)
.++++++.+++||++||++ +...++++++| ||+ ++|+....+...+.
T Consensus 514 ---------------------------s~~g~~~~~~~ly~vGG~~-~~~~l~~ve~y---dp~~d~W~~~~~~~~~~~ 561 (571)
T KOG4441|consen 514 ---------------------------SAVGVVVLGGKLYAVGGFD-GNNNLNTVECY---DPETDTWTEVTEPESGRG 561 (571)
T ss_pred ---------------------------ccccEEEECCEEEEEeccc-CccccceeEEc---CCCCCceeeCCCcccccc
Confidence 3456779999999999998 88999999999 999 99999988544444
No 2
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=7.9e-48 Score=424.02 Aligned_cols=410 Identities=13% Similarity=0.062 Sum_probs=308.0
Q ss_pred hhHHHHHHHH---HHHhccCCCCCCCCCcccccccceeeeeee--cCCCceeeeccCCCcCCCCCcccCCCccccCCCCC
Q 035526 22 VSKRLVRSVS---RKLRNKNLRNYDGDDEDDVKGVSLKCLTLY--GRGGGCKVGAETGEECGDSSSRRRSSASEEGKGYK 96 (557)
Q Consensus 22 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (557)
|+..+|+.|+ .+|+...++.+|++++. .+.+.-|||.++ +...+|.-+.+.-.+|+..++.+ ...++| |+
T Consensus 91 i~~~nv~~ll~aA~~lqi~~l~~~C~~~l~-~~l~~~NCl~i~~~~~~~~~~~L~~~a~~~i~~~f~~-v~~~~e---f~ 165 (557)
T PHA02713 91 ISSMNVIDVLKCADYLLIDDLVTDCESYIK-DYTNHDTCIYMYHRLYEMSHIPIVKYIKRMLMSNIPT-LITTDA---FK 165 (557)
T ss_pred CCHHHHHHHHHHHHHHCHHHHHHHHHHHHH-hhCCccchHHHHHHHHhccchHHHHHHHHHHHHHHHH-HhCChh---hh
Confidence 7889999777 89999999999999998 778889999994 56677754555555666666655 333333 44
Q ss_pred CCCCCccc----------c-eeeeeeeccceeceeeecCCc-cccccccccccCCCCCCCHHHHHHHHhcCCccchhhhh
Q 035526 97 PFCGSEEI----------G-VGVDCFSYGVKEKFWKKSNSK-NLELQDSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNAR 164 (557)
Q Consensus 97 ~~c~~e~~----------~-~~~~~~~~~~~~~~W~~~~~~-~~~l~~l~~~~r~~~~lp~dl~~~il~rLP~~sl~~~~ 164 (557)
.+..++.. + ...+.|+. .+.|++||.+ +.++.++++++|++++.+.+++ .++. ..+++..
T Consensus 166 ~L~~~~l~~lL~~d~~l~v~~Ee~v~ea---v~~W~~~d~~~r~~~~~ll~~VR~~~l~~~~~~-~~~~----~~~i~~~ 237 (557)
T PHA02713 166 KTVFEILFDIISTNDNVYLYREGYKVTI---LLKWLEYNYITEEQLLCILSCIDIQNLDKKSRL-LLYS----NKTINMY 237 (557)
T ss_pred hCCHHHHHHHhccccccCCCcHHHHHHH---HHHHHhcCHHHHHHHhhhHhhhhHhhcchhhhh-hhcc----hHHHHhh
Confidence 32211110 0 01122222 3569999987 6667899999999988777664 3333 4455556
Q ss_pred hcccccccccCChhhhhhhhccccCCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEE
Q 035526 165 LVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVV 244 (557)
Q Consensus 165 ~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYVi 244 (557)
..|+++-.-+. +.++.... ...+++.||. .......+++||+.+++|..+++||.+ |..+++++++++|||+
T Consensus 238 ~~c~~~l~~a~-----~~~~~~~r-~~~l~~~~g~-~~~~~~~v~~yd~~~~~W~~l~~mp~~-r~~~~~a~l~~~IYvi 309 (557)
T PHA02713 238 PSCIQFLLDNK-----QNRNIIPR-QLCLVCHDTK-YNVCNPCILVYNINTMEYSVISTIPNH-IINYASAIVDNEIIIA 309 (557)
T ss_pred HHHHHHHhhhh-----hhcccCCc-ceEEEEecCc-cccCCCCEEEEeCCCCeEEECCCCCcc-ccceEEEEECCEEEEE
Confidence 66665421110 00010011 1345555542 111234689999999999999999986 8899999999999999
Q ss_pred cccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccc
Q 035526 245 GGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVS 324 (557)
Q Consensus 245 GG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~ 324 (557)
||..... ...+++++|||.+++|.++|+|+.+|..+++++++ | +||++||.+
T Consensus 310 GG~~~~~----------~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~~~~--g----------------~IYviGG~~ 361 (557)
T PHA02713 310 GGYNFNN----------PSLNKVYKINIENKIHVELPPMIKNRCRFSLAVID--D----------------TIYAIGGQN 361 (557)
T ss_pred cCCCCCC----------CccceEEEEECCCCeEeeCCCCcchhhceeEEEEC--C----------------EEEEECCcC
Confidence 9975321 24678999999999999999999999998777776 3 999999974
Q ss_pred cccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCC---------------
Q 035526 325 DVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWD--------------- 387 (557)
Q Consensus 325 ~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~--------------- 387 (557)
+...++++++|||.+++|+. ++|.+|..++++++++ +||++||.++..
T Consensus 362 ----~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~g-----------~IYviGG~~~~~~~~~~~~~~~~~~~~ 426 (557)
T PHA02713 362 ----GTNVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLDQ-----------YIYIIGGRTEHIDYTSVHHMNSIDMEE 426 (557)
T ss_pred ----CCCCCceEEEEECCCCeEEECCCCCcccccccEEEECC-----------EEEEEeCCCcccccccccccccccccc
Confidence 45568899999999999999 8899999999999987 999999986421
Q ss_pred --CCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC-------eEEEEECCC-CcEEeccCCCCCCcc
Q 035526 388 --EPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE-------KLAGYYIER-GFWIGIQTSPFPPCV 457 (557)
Q Consensus 388 --~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~-------~i~~YD~~~-~~W~~i~~~p~p~~~ 457 (557)
..++++++|||.+|+|+.+++|+.++..++ +++++|+|||+||.+ .+++|||++ ++|+.+++||.++
T Consensus 427 ~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~-~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r-- 503 (557)
T PHA02713 427 DTHSSNKVIRYDTVNNIWETLPNFWTGTIRPG-VVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRL-- 503 (557)
T ss_pred cccccceEEEECCCCCeEeecCCCCcccccCc-EEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCccc--
Confidence 136789999999999999999999998765 578899999999962 578999999 7999999887665
Q ss_pred cccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCceecccC
Q 035526 458 IEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRN 536 (557)
Q Consensus 458 ~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~ 536 (557)
.+++.++.+++||++||++ + ..++++| |++ ++|+.+++-
T Consensus 504 ---------------------------------~~~~~~~~~~~iyv~Gg~~-~---~~~~e~y---d~~~~~W~~~~~~ 543 (557)
T PHA02713 504 ---------------------------------SALHTILHDNTIMMLHCYE-S---YMLQDTF---NVYTYEWNHICHQ 543 (557)
T ss_pred ---------------------------------ccceeEEECCEEEEEeeec-c---eeehhhc---Ccccccccchhhh
Confidence 2346678899999999998 2 3479999 999 999998776
Q ss_pred Cc
Q 035526 537 HM 538 (557)
Q Consensus 537 ~~ 538 (557)
+.
T Consensus 544 ~~ 545 (557)
T PHA02713 544 HS 545 (557)
T ss_pred cC
Confidence 53
No 3
>PHA03098 kelch-like protein; Provisional
Probab=100.00 E-value=1.2e-40 Score=367.70 Aligned_cols=422 Identities=14% Similarity=0.184 Sum_probs=305.1
Q ss_pred hhhhHHHHHHHH---HHHhccCCCCCCCCCcccccccceeeeee--ecCCCceeeeccCCCcCCCCCcccCCCccccCCC
Q 035526 20 LSVSKRLVRSVS---RKLRNKNLRNYDGDDEDDVKGVSLKCLTL--YGRGGGCKVGAETGEECGDSSSRRRSSASEEGKG 94 (557)
Q Consensus 20 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (557)
|.++..+|++|+ .+|+....+..|.+++. .+.+..|||.+ +|...+|.-+.+.-.+|+..++.+ ....++
T Consensus 71 ~~i~~~~~~~ll~~A~~l~~~~l~~~C~~~l~-~~l~~~nc~~~~~~a~~~~~~~L~~~~~~~i~~nf~~-v~~~~~--- 145 (534)
T PHA03098 71 INITSNNVKDILSIANYLIIDFLINLCINYII-KIIDDNNCIDIYRFSFFYGCKKLYSAAYNYIRNNIEL-IYNDPD--- 145 (534)
T ss_pred eEEcHHHHHHHHHHHHHhCcHHHHHHHHHHHH-HhCCHhHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHH-HhcCch---
Confidence 567788899777 88999999999999998 66788899999 788999987777667776655544 333333
Q ss_pred CCCCCCC---------cccce-eeeeeeccceeceeeecCCc--cccccccccccCCCCCCCHHHHHHHH--hcCCccch
Q 035526 95 YKPFCGS---------EEIGV-GVDCFSYGVKEKFWKKSNSK--NLELQDSVRNSRMHIFLPDDTLEMCL--VRFPLTSL 160 (557)
Q Consensus 95 ~~~~c~~---------e~~~~-~~~~~~~~~~~~~W~~~~~~--~~~l~~l~~~~r~~~~lp~dl~~~il--~rLP~~sl 160 (557)
|+.+-.+ +.... ..+.|.. .+.|++|+.+ ..+++++++++|++.+.|++|.+... .+..-..+
T Consensus 146 f~~l~~~~l~~ll~~~~L~v~~E~~v~~a---v~~W~~~~~~~r~~~~~~ll~~vR~~~~~~~~l~~~~~~~~~~~~~~~ 222 (534)
T PHA03098 146 FIYLSKNELIKILSDDKLNVSSEDVVLEI---IIKWLTSKKNNKYKDICLILKVLRITFLSEEGIKKLKRWKLRIKKKKI 222 (534)
T ss_pred hhcCCHHHHHHHhcCCCcCcCCHHHHHHH---HHHHHhcChhhhHhHHHHHHhhccccccCHHHHHHHHHHHhhcCCcce
Confidence 4332111 11000 0112222 3469999987 57899999999999888887765432 11111111
Q ss_pred hhhhhcccccccccCChhhhh-hhhccccCCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECC
Q 035526 161 MNARLVCKKWRYLTTTPRFLQ-MRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD 239 (557)
Q Consensus 161 ~~~~~vck~W~~l~~sp~~~~-~~~~~~~~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~ 239 (557)
+ .+..|+.- +.....+.. .+.........+++.||.. .....+..|++.+++|..++++|. +..|+++++++
T Consensus 223 ~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 295 (534)
T PHA03098 223 V-FNKRCIKI--IYSKKYNLNKILPRSSTFGSIIYIHITMS--IFTYNYITNYSPLSEINTIIDIHY--VYCFGSVVLNN 295 (534)
T ss_pred e-ccccchHH--HHHHHhcccCCCcCccCCCcceEeecccc--hhhceeeecchhhhhcccccCccc--cccceEEEECC
Confidence 1 22222210 000000000 0000111234455555543 123456789999999999887653 45578999999
Q ss_pred EEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEE
Q 035526 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSR 319 (557)
Q Consensus 240 ~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv 319 (557)
.|||+||..... ...+++++||+.+++|.++|+|+.+|..+++++++ + ++|+
T Consensus 296 ~lyv~GG~~~~~----------~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~~~~--~----------------~lyv 347 (534)
T PHA03098 296 VIYFIGGMNKNN----------LSVNSVVSYDTKTKSWNKVPELIYPRKNPGVTVFN--N----------------RIYV 347 (534)
T ss_pred EEEEECCCcCCC----------CeeccEEEEeCCCCeeeECCCCCcccccceEEEEC--C----------------EEEE
Confidence 999999986532 24578999999999999999999999998777665 3 8999
Q ss_pred EcccccccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEe
Q 035526 320 LGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYD 397 (557)
Q Consensus 320 ~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD 397 (557)
+||.. +...++++++||+.+++|+. ++|.+|..++++..++ +||++||.......++++++||
T Consensus 348 ~GG~~----~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~~-----------~iYv~GG~~~~~~~~~~v~~yd 412 (534)
T PHA03098 348 IGGIY----NSISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVNN-----------LIYVIGGISKNDELLKTVECFS 412 (534)
T ss_pred EeCCC----CCEecceEEEEcCCCCceeeCCCcCcCCccceEEEECC-----------EEEEECCcCCCCcccceEEEEe
Confidence 99975 44567899999999999998 7888999999998886 9999999765444678999999
Q ss_pred CCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC---------eEEEEECCCCcEEeccCCCCCCcccccCCEEEEEc
Q 035526 398 SVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE---------KLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWA 468 (557)
Q Consensus 398 ~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~---------~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~ 468 (557)
+.+++|+.++++|.++..++ +++.+++||++||.+ .+++||+++++|+.+++++.|+
T Consensus 413 ~~t~~W~~~~~~p~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r------------- 478 (534)
T PHA03098 413 LNTNKWSKGSPLPISHYGGC-AIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPR------------- 478 (534)
T ss_pred CCCCeeeecCCCCccccCce-EEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCccc-------------
Confidence 99999999999999988765 477899999999952 4899999999999998776554
Q ss_pred CCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCceecccCCcC
Q 035526 469 RSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHISRNHMD 539 (557)
Q Consensus 469 gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i~~~~~~ 539 (557)
.+++.++.+++||++||.+ .....+.+++| |++ ++|+.++.+|..
T Consensus 479 ----------------------~~~~~~~~~~~iyv~GG~~-~~~~~~~v~~y---d~~~~~W~~~~~~p~~ 524 (534)
T PHA03098 479 ----------------------INASLCIFNNKIYVVGGDK-YEYYINEIEVY---DDKTNTWTLFCKFPKV 524 (534)
T ss_pred ----------------------ccceEEEECCEEEEEcCCc-CCcccceeEEE---eCCCCEEEecCCCccc
Confidence 2334556799999999987 44557889999 999 999999876653
No 4
>PHA02790 Kelch-like protein; Provisional
Probab=100.00 E-value=8.5e-40 Score=355.20 Aligned_cols=359 Identities=13% Similarity=0.098 Sum_probs=261.8
Q ss_pred hhhhHHHHHHHH---HHHhccCCCCCCCCCcccccccceeeeee--ecCCCceeeeccCCCcCCCCCcccCCCcc--ccC
Q 035526 20 LSVSKRLVRSVS---RKLRNKNLRNYDGDDEDDVKGVSLKCLTL--YGRGGGCKVGAETGEECGDSSSRRRSSAS--EEG 92 (557)
Q Consensus 20 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 92 (557)
|.|+..||++|+ .+|+...++.+|++|+. .+.+.-|||.+ ||...+|.-+...-.+|+..++.+- ... +|
T Consensus 86 l~it~~nV~~ll~aA~~Lqi~~v~~~C~~fL~-~~l~~~NCl~i~~~A~~y~~~~L~~~a~~fi~~nF~~v-~~~~~~e- 162 (480)
T PHA02790 86 VYIDSHNVVNLLRASILTSVEFIIYTCINFIL-RDFRKEYCVECYMMGIEYGLSNLLCHTKDFIAKHFLEL-EDDIIDN- 162 (480)
T ss_pred EEEecccHHHHHHHHHHhChHHHHHHHHHHHH-hhCCcchHHHHHHHHHHhCHHHHHHHHHHHHHHhHHHH-hcccchh-
Confidence 557788999887 89999999999999999 77899999999 9999999988888888888888773 322 23
Q ss_pred CCCCC------CCCCcccce-eeeeeeccceeceeeecCCc-cccccccccc-cCCCCCCCHHHHHHHHhcC--------
Q 035526 93 KGYKP------FCGSEEIGV-GVDCFSYGVKEKFWKKSNSK-NLELQDSVRN-SRMHIFLPDDTLEMCLVRF-------- 155 (557)
Q Consensus 93 ~~~~~------~c~~e~~~~-~~~~~~~~~~~~~W~~~~~~-~~~l~~l~~~-~r~~~~lp~dl~~~il~rL-------- 155 (557)
|+. +..++..+. ..+.|+.. +.|++|+.. .+++.++++. +|+..+.+..+ ..+...+
T Consensus 163 --f~~L~~~~lLssd~L~v~~Ee~V~eav---~~Wl~~~~~~~~~l~~~vr~~ir~~~l~~~~l-~~~~~~~~~~~~~~~ 236 (480)
T PHA02790 163 --FDYLSMKLILESDELNVPDEDYVVDFV---IKWYMKRRNRLGNLLLLIKNVIRSNYLSPRGI-NNVKWILDCTKIFHC 236 (480)
T ss_pred --hhhCCHHHhcccccCCCccHHHHHHHH---HHHHHhhHHHHHHHHHHHHhcCChhhCCHHHH-HHHHHHHHHHHHhhc
Confidence 432 111111110 12334333 459999754 3455555555 67765555544 2221100
Q ss_pred ---Cccch----hhhhhcccccccccCChhhhhhhhccccCCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCc
Q 035526 156 ---PLTSL----MNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKG 228 (557)
Q Consensus 156 ---P~~sl----~~~~~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~ 228 (557)
|.... ........+|..+. ........++.||++||.+.....+.+++|||.+++|..+++|+.+
T Consensus 237 ~~~~r~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~- 308 (480)
T PHA02790 237 DKQPRKSYKYPFIEYPMNMDQIIDIF-------HMCTSTHVGEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSP- 308 (480)
T ss_pred cccccccccccccccCCcccceeecc-------CCcceEEECCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCch-
Confidence 10000 00000011121110 0000112578999999976555677899999999999999999986
Q ss_pred ceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccC
Q 035526 229 RFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQ 308 (557)
Q Consensus 229 R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~ 308 (557)
|..+++++++++||++||..+. +++++|||.+++|..+|+|+.+|..+++++++
T Consensus 309 r~~~~~v~~~~~iYviGG~~~~--------------~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~------------ 362 (480)
T PHA02790 309 RLYASGVPANNKLYVVGGLPNP--------------TSVERWFHGDAAWVNMPSLLKPRCNPAVASIN------------ 362 (480)
T ss_pred hhcceEEEECCEEEEECCcCCC--------------CceEEEECCCCeEEECCCCCCCCcccEEEEEC------------
Confidence 9889999999999999996431 46899999999999999999999886665543
Q ss_pred CCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccccCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCC
Q 035526 309 SHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDE 388 (557)
Q Consensus 309 ~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~ 388 (557)
++||++||.+..
T Consensus 363 ------------------------------------------------------------------g~IYviGG~~~~-- 374 (480)
T PHA02790 363 ------------------------------------------------------------------NVIYVIGGHSET-- 374 (480)
T ss_pred ------------------------------------------------------------------CEEEEecCcCCC--
Confidence 288888887543
Q ss_pred CCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEc
Q 035526 389 PLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWA 468 (557)
Q Consensus 389 ~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~ 468 (557)
.+.+++|||.+++|+.+++||.++..++ +++++|+|||+||. +++|||++++|+.+++|+.|+
T Consensus 375 -~~~ve~ydp~~~~W~~~~~m~~~r~~~~-~~~~~~~IYv~GG~--~e~ydp~~~~W~~~~~m~~~r------------- 437 (480)
T PHA02790 375 -DTTTEYLLPNHDQWQFGPSTYYPHYKSC-ALVFGRRLFLVGRN--AEFYCESSNTWTLIDDPIYPR------------- 437 (480)
T ss_pred -CccEEEEeCCCCEEEeCCCCCCccccce-EEEECCEEEEECCc--eEEecCCCCcEeEcCCCCCCc-------------
Confidence 3679999999999999999999998865 46789999999985 788999999999999887655
Q ss_pred CCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCcee
Q 035526 469 RSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSH 532 (557)
Q Consensus 469 gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~ 532 (557)
.+++.++.+++||++||++ .++.++.+++| |++ ++|+.
T Consensus 438 ----------------------~~~~~~v~~~~IYviGG~~-~~~~~~~ve~Y---d~~~~~W~~ 476 (480)
T PHA02790 438 ----------------------DNPELIIVDNKLLLIGGFY-RGSYIDTIEVY---NNRTYSWNI 476 (480)
T ss_pred ----------------------cccEEEEECCEEEEECCcC-CCcccceEEEE---ECCCCeEEe
Confidence 2345678999999999997 55667899999 999 99964
No 5
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=3e-36 Score=331.31 Aligned_cols=246 Identities=22% Similarity=0.305 Sum_probs=214.6
Q ss_pred ccchhhhhhcccccccccCChhhhhhhhccccCCCeEEEEeeec-CCcccceEEEeeCCCCceEEccCCCcCcceeeEEE
Q 035526 157 LTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVK-DGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVV 235 (557)
Q Consensus 157 ~~sl~~~~~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~-~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a 235 (557)
...+..+++..+.|..++..|.- +.+......++.||++||.+ ....++.+++|||.+++|..+++|+.+ |..++++
T Consensus 300 ~~~ve~yd~~~~~w~~~a~m~~~-r~~~~~~~~~~~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-R~~~~v~ 377 (571)
T KOG4441|consen 300 LRSVECYDPKTNEWSSLAPMPSP-RCRVGVAVLNGKLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-RSDFGVA 377 (571)
T ss_pred cceeEEecCCcCcEeecCCCCcc-cccccEEEECCEEEEEccccCCCcccceEEEecCCCCceeccCCccCc-cccceeE
Confidence 45555667777889999988731 11112233589999999998 456789999999999999999999987 9999999
Q ss_pred EECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCC
Q 035526 236 SIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRF 315 (557)
Q Consensus 236 ~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~ 315 (557)
+++|.||++||.++. ...+++++|||.+++|..+++|+.+|..++++++. |
T Consensus 378 ~l~g~iYavGG~dg~-----------~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~--g---------------- 428 (571)
T KOG4441|consen 378 VLDGKLYAVGGFDGE-----------KSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLG--G---------------- 428 (571)
T ss_pred EECCEEEEEeccccc-----------cccccEEEecCCCCcccccCCCCcceeeeEEEEEC--C----------------
Confidence 999999999999976 35679999999999999999999999998777776 4
Q ss_pred cEEEEcccccccCCCC-cccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCce
Q 035526 316 PRSRLGGVSDVYEDPH-RLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDS 392 (557)
Q Consensus 316 ~lyv~GG~~~~y~~~~-~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ 392 (557)
++|++||.+ +.. .++++++|||.+|.|+. +|+.+|.+++++++++ +||++||+++ ...+.+
T Consensus 429 ~iYi~GG~~----~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~~~~-----------~iYvvGG~~~-~~~~~~ 492 (571)
T KOG4441|consen 429 KLYIIGGGD----GSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAVLNG-----------KIYVVGGFDG-TSALSS 492 (571)
T ss_pred EEEEEcCcC----CCccccceEEEEcCCCCceeecCCcccccccceEEEECC-----------EEEEECCccC-CCccce
Confidence 999999986 445 89999999999999999 8999999999999997 9999999988 347888
Q ss_pred EEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecC------CeEEEEECCCCcEEeccC
Q 035526 393 GEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------EKLAGYYIERGFWIGIQT 450 (557)
Q Consensus 393 ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~------~~i~~YD~~~~~W~~i~~ 450 (557)
||+|||.+++|+.+++|+.++...+ +++.++++|++||. +.+++|||++++|+....
T Consensus 493 VE~ydp~~~~W~~v~~m~~~rs~~g-~~~~~~~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 493 VERYDPETNQWTMVAPMTSPRSAVG-VVVLGGKLYAVGGFDGNNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred EEEEcCCCCceeEcccCcccccccc-EEEECCEEEEEecccCccccceeEEcCCCCCceeeCCC
Confidence 9999999999999999999998755 57889999999997 389999999999999987
No 6
>PHA02713 hypothetical protein; Provisional
Probab=100.00 E-value=5.5e-35 Score=322.19 Aligned_cols=249 Identities=13% Similarity=0.181 Sum_probs=204.7
Q ss_pred chhhhhhcccccccccCChhhhhhhhccccCCCeEEEEeeec-CCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEE
Q 035526 159 SLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVK-DGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI 237 (557)
Q Consensus 159 sl~~~~~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~-~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~ 237 (557)
.+..+++..++|..+...|.-.. .......++.||++||.. .....+.+++|||.+++|..+++||.+ |..++++++
T Consensus 273 ~v~~yd~~~~~W~~l~~mp~~r~-~~~~a~l~~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~-R~~~~~~~~ 350 (557)
T PHA02713 273 CILVYNINTMEYSVISTIPNHII-NYASAIVDNEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKN-RCRFSLAVI 350 (557)
T ss_pred CEEEEeCCCCeEEECCCCCcccc-ceEEEEECCEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcch-hhceeEEEE
Confidence 34557777889999987774211 122334589999999974 233568899999999999999999976 999999999
Q ss_pred CCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcE
Q 035526 238 MDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPR 317 (557)
Q Consensus 238 ~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~l 317 (557)
+|+||++||.++. ...+++++|||.+++|..+++|+.+|..+++++++ | +|
T Consensus 351 ~g~IYviGG~~~~-----------~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~~~~--g----------------~I 401 (557)
T PHA02713 351 DDTIYAIGGQNGT-----------NVERTIECYTMGDDKWKMLPDMPIALSSYGMCVLD--Q----------------YI 401 (557)
T ss_pred CCEEEEECCcCCC-----------CCCceEEEEECCCCeEEECCCCCcccccccEEEEC--C----------------EE
Confidence 9999999998654 24578999999999999999999999998777665 4 99
Q ss_pred EEEccccccc--------------CCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEc
Q 035526 318 SRLGGVSDVY--------------EDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVG 381 (557)
Q Consensus 318 yv~GG~~~~y--------------~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviG 381 (557)
|++||.+... ++...++++++|||.+|+|+. +|+.+|..++++++++ +||++|
T Consensus 402 YviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~-----------~IYv~G 470 (557)
T PHA02713 402 YIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKD-----------DIYVVC 470 (557)
T ss_pred EEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCCCCcccccCcEEEECC-----------EEEEEe
Confidence 9999975211 011236889999999999998 8888999999999997 999999
Q ss_pred ccCCCCCCCceEEEEeCCC-CcEEEccCCCCCCcCceEEEEECCEEEEEecCC---eEEEEECCCCcEEeccC
Q 035526 382 GLGSWDEPLDSGEIYDSVS-NKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE---KLAGYYIERGFWIGIQT 450 (557)
Q Consensus 382 G~~~~~~~l~~ve~YD~~t-~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~---~i~~YD~~~~~W~~i~~ 450 (557)
|.++.......+|+|||.+ |+|+.+++||.+|..++ +++++|+||++||.+ .+++||+.+++|+.+.+
T Consensus 471 G~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~-~~~~~~~iyv~Gg~~~~~~~e~yd~~~~~W~~~~~ 542 (557)
T PHA02713 471 DIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALH-TILHDNTIMMLHCYESYMLQDTFNVYTYEWNHICH 542 (557)
T ss_pred CCCCCCccceeEEEecCCCCCCeeEccccCcccccce-eEEECCEEEEEeeecceeehhhcCcccccccchhh
Confidence 9865432345789999999 89999999999998765 477899999999976 59999999999998875
No 7
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.6e-33 Score=291.17 Aligned_cols=287 Identities=16% Similarity=0.201 Sum_probs=211.2
Q ss_pred cccccccCChhh-hhhhhc--cccCCCeEEEEeeecCC--cccceEEEeeCCCCceEEccCCCcCcc---eeeEEEEECC
Q 035526 168 KKWRYLTTTPRF-LQMRRE--GLHQNPWLFLFGAVKDG--YYSGEIHALDVSQDQWHRIDASILKGR---FMFSVVSIMD 239 (557)
Q Consensus 168 k~W~~l~~sp~~-~~~~~~--~~~~~~~L~v~GG~~~~--~~~~~v~~yd~~~~~W~~l~~~p~~~R---~~~s~a~~~~ 239 (557)
.+|..+...... +..|.. ....++.|||+||.... ...+++++||+.+++|..+++++..+| .+|+++++++
T Consensus 7 ~~W~~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~ 86 (341)
T PLN02153 7 GGWIKVEQKGGKGPGPRCSHGIAVVGDKLYSFGGELKPNEHIDKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGT 86 (341)
T ss_pred CeEEEecCCCCCCCCCCCcceEEEECCEEEEECCccCCCCceeCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECC
Confidence 458888663211 112222 22348899999997432 235789999999999999987643223 4788999999
Q ss_pred EEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccC-----CcCcccceEEEEecCCCcccccccCCCCCCC
Q 035526 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASM-----RYARSMPILGISEVSPEFSIIPCHQSHQDRR 314 (557)
Q Consensus 240 ~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m-----~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r 314 (557)
+|||+||..... ..+++++|||.+++|+.+++| |.+|..+++++.+ +
T Consensus 87 ~iyv~GG~~~~~-----------~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~--~--------------- 138 (341)
T PLN02153 87 KLYIFGGRDEKR-----------EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDE--N--------------- 138 (341)
T ss_pred EEEEECCCCCCC-----------ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEEC--C---------------
Confidence 999999986542 456899999999999999987 7889887776654 3
Q ss_pred CcEEEEcccccc--cCCCCcccceeeccccCCcccc--c---CCCCCCCceEEEeccchhhhhhccceEEEEEcccCCC-
Q 035526 315 FPRSRLGGVSDV--YEDPHRLSLRRQYRNSFDGFEG--S---LLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSW- 386 (557)
Q Consensus 315 ~~lyv~GG~~~~--y~~~~~l~~v~~yd~~~~~W~~--~---~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~- 386 (557)
++||+||.+.. .+....++++++||+.+++|+. + .+.+|..++++++++ +||++||.+..
T Consensus 139 -~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~-----------~iyv~GG~~~~~ 206 (341)
T PLN02153 139 -HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQG-----------KIWVVYGFATSI 206 (341)
T ss_pred -EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECC-----------eEEEEecccccc
Confidence 89999997521 1122356789999999999998 2 236889999888886 99999997421
Q ss_pred ------CCCCceEEEEeCCCCcEEEccC---CCCCCcCceEEEEECCEEEEEecC---------------CeEEEEECCC
Q 035526 387 ------DEPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSET---------------EKLAGYYIER 442 (557)
Q Consensus 387 ------~~~l~~ve~YD~~t~~W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~---------------~~i~~YD~~~ 442 (557)
...++++++||+.+++|+.+.. +|.+|..++ +++++++|||+||. +++++||+++
T Consensus 207 ~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~d~~~ 285 (341)
T PLN02153 207 LPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFA-HAVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYALDTET 285 (341)
T ss_pred ccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceee-eEEECCEEEEECcccCCccccccccccccccEEEEEcCc
Confidence 1236789999999999999964 677787655 47789999999995 3789999999
Q ss_pred CcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEe
Q 035526 443 GFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCD 522 (557)
Q Consensus 443 ~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~ 522 (557)
++|+.+.....| ++|.....+.++.+..+++||++||+.-....++++..|.
T Consensus 286 ~~W~~~~~~~~~----------------------------~~pr~~~~~~~~~v~~~~~~~~~gG~~~~~~~~~~~~~~~ 337 (341)
T PLN02153 286 LVWEKLGECGEP----------------------------AMPRGWTAYTTATVYGKNGLLMHGGKLPTNERTDDLYFYA 337 (341)
T ss_pred cEEEeccCCCCC----------------------------CCCCccccccccccCCcceEEEEcCcCCCCccccceEEEe
Confidence 999988743211 1222222334455566679999999973456778888885
Q ss_pred c
Q 035526 523 V 523 (557)
Q Consensus 523 ~ 523 (557)
|
T Consensus 338 ~ 338 (341)
T PLN02153 338 V 338 (341)
T ss_pred c
Confidence 4
No 8
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=100.00 E-value=1.3e-31 Score=280.01 Aligned_cols=262 Identities=15% Similarity=0.109 Sum_probs=188.4
Q ss_pred cCCCeEEEEeeecCCcccceEEEeeC--CCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccc
Q 035526 188 HQNPWLFLFGAVKDGYYSGEIHALDV--SQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHK 265 (557)
Q Consensus 188 ~~~~~L~v~GG~~~~~~~~~v~~yd~--~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~ 265 (557)
..++.|||+||.. .+.++.||+ .+++|..+++||..+|..+++++++++|||+||....... ......+
T Consensus 15 ~~~~~vyv~GG~~----~~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~-----~~~~~~~ 85 (346)
T TIGR03547 15 IIGDKVYVGLGSA----GTSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAIDGKLYVFGGIGKANSE-----GSPQVFD 85 (346)
T ss_pred EECCEEEEEcccc----CCeeEEEECCCCCCCceECCCCCCCCcccceEEEECCEEEEEeCCCCCCCC-----Ccceecc
Confidence 3488999999963 256889996 6789999999985459999999999999999997542100 0012467
Q ss_pred eEEEEecCCCcEEEcc-cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccc-cC---------CC----
Q 035526 266 RVLVFSPLTKSWWKVA-SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV-YE---------DP---- 330 (557)
Q Consensus 266 ~v~~ydp~t~~W~~l~-~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~-y~---------~~---- 330 (557)
++++|||.+++|++++ +++.+|..++++. ..++ +||++||.+.. ++ +.
T Consensus 86 ~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~-~~~g----------------~IYviGG~~~~~~~~~~~~~~~~~~~~~~ 148 (346)
T TIGR03547 86 DVYRYDPKKNSWQKLDTRSPVGLLGASGFS-LHNG----------------QAYFTGGVNKNIFDGYFADLSAADKDSEP 148 (346)
T ss_pred cEEEEECCCCEEecCCCCCCCcccceeEEE-EeCC----------------EEEEEcCcChHHHHHHHhhHhhcCccchh
Confidence 8999999999999997 4555555443331 2234 99999997521 00 00
Q ss_pred ----------------CcccceeeccccCCcccc--cCCC-CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCc
Q 035526 331 ----------------HRLSLRRQYRNSFDGFEG--SLLP-NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLD 391 (557)
Q Consensus 331 ----------------~~l~~v~~yd~~~~~W~~--~~~~-~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~ 391 (557)
..++.+++|||.+++|+. ++|. +|..++++++++ +||++||.........
T Consensus 149 ~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~~~~~-----------~iyv~GG~~~~~~~~~ 217 (346)
T TIGR03547 149 KDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGSAIVHKGN-----------KLLLINGEIKPGLRTA 217 (346)
T ss_pred hhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCceEEEECC-----------EEEEEeeeeCCCccch
Confidence 124789999999999999 6775 678888888886 9999999854332334
Q ss_pred eEEEEe--CCCCcEEEccCCCCCCcC------ceEEEEECCEEEEEecCC-----------------------eEEEEEC
Q 035526 392 SGEIYD--SVSNKWMEIQRLPVDFGV------VSSGVVCNGIFYVYSETE-----------------------KLAGYYI 440 (557)
Q Consensus 392 ~ve~YD--~~t~~W~~v~~lp~~~~~------~~~~vv~~g~lYv~GG~~-----------------------~i~~YD~ 440 (557)
.+++|| +.+++|+.+++||.++.. ...+++++++|||+||.+ .+++||+
T Consensus 218 ~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~ 297 (346)
T TIGR03547 218 EVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYAL 297 (346)
T ss_pred heEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEe
Confidence 566665 577899999999886531 122467899999999963 3566676
Q ss_pred CCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEE
Q 035526 441 ERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTV 520 (557)
Q Consensus 441 ~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~v 520 (557)
++++|+.+.+||.|+ ..++.++.+++|||+||.+..+..++.|..
T Consensus 298 ~~~~W~~~~~lp~~~-----------------------------------~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~ 342 (346)
T TIGR03547 298 DNGKWSKVGKLPQGL-----------------------------------AYGVSVSWNNGVLLIGGENSGGKAVTDVYL 342 (346)
T ss_pred cCCcccccCCCCCCc-----------------------------------eeeEEEEcCCEEEEEeccCCCCCEeeeEEE
Confidence 666666666555433 223456789999999999855677777765
Q ss_pred E
Q 035526 521 C 521 (557)
Q Consensus 521 y 521 (557)
+
T Consensus 343 ~ 343 (346)
T TIGR03547 343 L 343 (346)
T ss_pred E
Confidence 5
No 9
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=100.00 E-value=2.2e-31 Score=275.72 Aligned_cols=198 Identities=11% Similarity=0.095 Sum_probs=156.1
Q ss_pred CCCeEEEEeeecCCc----------ccceEEEee-CCC-CceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccc
Q 035526 189 QNPWLFLFGAVKDGY----------YSGEIHALD-VSQ-DQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRV 256 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~----------~~~~v~~yd-~~~-~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~ 256 (557)
.++.||++||.+... ..++++.|+ +.. .+|..+++||.+ |..++++++++.||++||.++.
T Consensus 12 ~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~-r~~~~~~~~~~~lyviGG~~~~------ 84 (323)
T TIGR03548 12 IGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYE-AAYGASVSVENGIYYIGGSNSS------ 84 (323)
T ss_pred ECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccCCcc-ccceEEEEECCEEEEEcCCCCC------
Confidence 488999999975421 345788885 332 379999999976 8778888899999999997654
Q ss_pred cCCcccccceEEEEecCCCcE----EEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCc
Q 035526 257 DGSSFKTHKRVLVFSPLTKSW----WKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHR 332 (557)
Q Consensus 257 ~~~~~~~~~~v~~ydp~t~~W----~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~ 332 (557)
...+++++||+.+++| ..+++||.+|..+++++++ + +||++||.. +...
T Consensus 85 -----~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~--~----------------~iYv~GG~~----~~~~ 137 (323)
T TIGR03548 85 -----ERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKD--G----------------TLYVGGGNR----NGKP 137 (323)
T ss_pred -----CCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEEC--C----------------EEEEEeCcC----CCcc
Confidence 2467899999999998 7899999999988777765 3 899999964 3445
Q ss_pred ccceeeccccCCcccc--cCC-CCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCC
Q 035526 333 LSLRRQYRNSFDGFEG--SLL-PNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRL 409 (557)
Q Consensus 333 l~~v~~yd~~~~~W~~--~~~-~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~l 409 (557)
++.+++||+.+++|+. ++| .+|..+.++++++ +||++||.+.. ...++++||+.+++|+.+++|
T Consensus 138 ~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~-----------~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~~ 204 (323)
T TIGR03548 138 SNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQN-----------ELYVFGGGSNI--AYTDGYKYSPKKNQWQKVADP 204 (323)
T ss_pred CceEEEEcCCCCCeeECCCCCCCCCCcceEEEECC-----------EEEEEcCCCCc--cccceEEEecCCCeeEECCCC
Confidence 7899999999999998 466 4788888888886 99999998653 345789999999999999876
Q ss_pred CC---C--CcCceEEEEECCEEEEEecCC
Q 035526 410 PV---D--FGVVSSGVVCNGIFYVYSETE 433 (557)
Q Consensus 410 p~---~--~~~~~~~vv~~g~lYv~GG~~ 433 (557)
+. + +..++++++.+++|||+||.+
T Consensus 205 ~~~~~p~~~~~~~~~~~~~~~iyv~GG~~ 233 (323)
T TIGR03548 205 TTDSEPISLLGAASIKINESLLLCIGGFN 233 (323)
T ss_pred CCCCCceeccceeEEEECCCEEEEECCcC
Confidence 42 2 233334455689999999964
No 10
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=3.4e-31 Score=287.12 Aligned_cols=280 Identities=16% Similarity=0.187 Sum_probs=210.0
Q ss_pred cccccccCChhhhhhhhcc--ccCCCeEEEEeeecC-Cc-ccceEEEeeCCCCceEEccCC---CcCcceeeEEEEECCE
Q 035526 168 KKWRYLTTTPRFLQMRREG--LHQNPWLFLFGAVKD-GY-YSGEIHALDVSQDQWHRIDAS---ILKGRFMFSVVSIMDD 240 (557)
Q Consensus 168 k~W~~l~~sp~~~~~~~~~--~~~~~~L~v~GG~~~-~~-~~~~v~~yd~~~~~W~~l~~~---p~~~R~~~s~a~~~~~ 240 (557)
.+|..+......+..|..+ ...++.||++||... +. ..+++++||+.+++|..++++ |.+.|..|++++++++
T Consensus 151 ~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~~~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~ 230 (470)
T PLN02193 151 GKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTPNQPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGST 230 (470)
T ss_pred ceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCCCCCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCE
Confidence 5898876532222223222 224889999999743 22 346799999999999988764 3323678899999999
Q ss_pred EEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccC---CcCcccceEEEEecCCCcccccccCCCCCCCCcE
Q 035526 241 VYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASM---RYARSMPILGISEVSPEFSIIPCHQSHQDRRFPR 317 (557)
Q Consensus 241 IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m---~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~l 317 (557)
|||+||.+.. ...+++++|||.+++|+++++| |.+|..+++++.+ + +|
T Consensus 231 lYvfGG~~~~-----------~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~--~----------------~i 281 (470)
T PLN02193 231 LYVFGGRDAS-----------RQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADE--E----------------NV 281 (470)
T ss_pred EEEECCCCCC-----------CCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEEC--C----------------EE
Confidence 9999998654 2467999999999999999988 7899988776654 3 89
Q ss_pred EEEcccccccCCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCce
Q 035526 318 SRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDS 392 (557)
Q Consensus 318 yv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ 392 (557)
|++||.+ ....++.+++||+.+++|+. .++.+|..++++++++ +||++||.++. .+++
T Consensus 282 Yv~GG~~----~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~g-----------kiyviGG~~g~--~~~d 344 (470)
T PLN02193 282 YVFGGVS----ATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQG-----------KVWVVYGFNGC--EVDD 344 (470)
T ss_pred EEECCCC----CCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECC-----------cEEEEECCCCC--ccCc
Confidence 9999975 44567889999999999987 2456899999998886 99999998653 4689
Q ss_pred EEEEeCCCCcEEEccCC---CCCCcCceEEEEECCEEEEEecC---------------CeEEEEECCCCcEEeccCCCCC
Q 035526 393 GEIYDSVSNKWMEIQRL---PVDFGVVSSGVVCNGIFYVYSET---------------EKLAGYYIERGFWIGIQTSPFP 454 (557)
Q Consensus 393 ve~YD~~t~~W~~v~~l---p~~~~~~~~~vv~~g~lYv~GG~---------------~~i~~YD~~~~~W~~i~~~p~p 454 (557)
+++||+.+++|+.++++ |.+|..++ +++++++|||+||. +++++||+.+++|+.+..++..
T Consensus 345 v~~yD~~t~~W~~~~~~g~~P~~R~~~~-~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~~~~~~ 423 (470)
T PLN02193 345 VHYYDPVQDKWTQVETFGVRPSERSVFA-SAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLDKFGEE 423 (470)
T ss_pred eEEEECCCCEEEEeccCCCCCCCcceeE-EEEECCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcccCCCC
Confidence 99999999999999764 77777755 47789999999995 2689999999999998865421
Q ss_pred CcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCce--EEeeCCEEEEEceeeEeceEeeeEEEE
Q 035526 455 PCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAA--FVADRNHIFGVEMFKIFGQVLDFLTVC 521 (557)
Q Consensus 455 ~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~--~~~~~~~iyvvgG~~~~g~~~~~v~vy 521 (557)
. ..|.++..+.++ ++..++.||++||+.-....++++.++
T Consensus 424 ~---------------------------~~P~~R~~~~~~~~~~~~~~~~~~fGG~~~~~~~~~D~~~~ 465 (470)
T PLN02193 424 E---------------------------ETPSSRGWTASTTGTIDGKKGLVMHGGKAPTNDRFDDLFFY 465 (470)
T ss_pred C---------------------------CCCCCCccccceeeEEcCCceEEEEcCCCCccccccceEEE
Confidence 1 011122222221 223345699999997345677888887
No 11
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=100.00 E-value=3.9e-31 Score=279.34 Aligned_cols=281 Identities=17% Similarity=0.135 Sum_probs=197.7
Q ss_pred cccccccCChhhhhhhhccccCCCeEEEEeeecCCcccceEEEeeCC--CCceEEccCCCcCcceeeEEEEECCEEEEEc
Q 035526 168 KKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVS--QDQWHRIDASILKGRFMFSVVSIMDDVYVVG 245 (557)
Q Consensus 168 k~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~~~~~~~~v~~yd~~--~~~W~~l~~~p~~~R~~~s~a~~~~~IYViG 245 (557)
..+..+++.|...... .....++.||++||... +.++.||+. +++|..++++|.++|..+++++++++|||+|
T Consensus 17 ~~~~~l~~lP~~~~~~-~~~~~~~~iyv~gG~~~----~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v~~~~~IYV~G 91 (376)
T PRK14131 17 ANAEQLPDLPVPFKNG-TGAIDNNTVYVGLGSAG----TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAAFIDGKLYVFG 91 (376)
T ss_pred eecccCCCCCcCccCC-eEEEECCEEEEEeCCCC----CeEEEEECCCCCCCeEECCcCCCCCcccceEEEECCEEEEEc
Confidence 3455565555321111 23335899999998642 357889886 4789999999865599999999999999999
Q ss_pred ccCCCCCCccccCCcccccceEEEEecCCCcEEEccc-CCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccc
Q 035526 246 GCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVAS-MRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVS 324 (557)
Q Consensus 246 G~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~-m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~ 324 (557)
|...... .......+++++|||.+++|+++++ ++.++..++++++ .++ +||++||..
T Consensus 92 G~~~~~~-----~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~-~~~----------------~IYv~GG~~ 149 (376)
T PRK14131 92 GIGKTNS-----EGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSL-HNG----------------KAYITGGVN 149 (376)
T ss_pred CCCCCCC-----CCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEe-eCC----------------EEEEECCCC
Confidence 9764110 0011246789999999999999986 3555555444331 234 999999975
Q ss_pred cc-cCC-----------------------------CCcccceeeccccCCcccc--cCCC-CCCCceEEEeccchhhhhh
Q 035526 325 DV-YED-----------------------------PHRLSLRRQYRNSFDGFEG--SLLP-NRKSYKFIRQKSDQSIAKA 371 (557)
Q Consensus 325 ~~-y~~-----------------------------~~~l~~v~~yd~~~~~W~~--~~~~-~r~~~~~~~~~~d~~~~~~ 371 (557)
.. +++ ....+.+++||+.++.|+. ++|. +|..++++..++
T Consensus 150 ~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~~~~a~v~~~~------- 222 (376)
T PRK14131 150 KNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGTAGSAVVIKGN------- 222 (376)
T ss_pred HHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCCCcceEEEECC-------
Confidence 21 100 0124789999999999998 6775 677888888776
Q ss_pred ccceEEEEEcccCCCCCCCceEE--EEeCCCCcEEEccCCCCCCcCc-------eEEEEECCEEEEEecCC---------
Q 035526 372 SKRFVLIAVGGLGSWDEPLDSGE--IYDSVSNKWMEIQRLPVDFGVV-------SSGVVCNGIFYVYSETE--------- 433 (557)
Q Consensus 372 ~~~~~iyviGG~~~~~~~l~~ve--~YD~~t~~W~~v~~lp~~~~~~-------~~~vv~~g~lYv~GG~~--------- 433 (557)
+||++||..........++ .||+++++|+.+++||.++..+ ..+++++++|||+||.+
T Consensus 223 ----~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~ 298 (376)
T PRK14131 223 ----KLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQ 298 (376)
T ss_pred ----EEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhh
Confidence 9999999744322233333 4578999999999998876321 12467899999999953
Q ss_pred --------------eEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeC
Q 035526 434 --------------KLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADR 499 (557)
Q Consensus 434 --------------~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~ 499 (557)
.+++||+++++|+.++.||.|+ . .++.++.+
T Consensus 299 ~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~lp~~r---------------------------------~--~~~av~~~ 343 (376)
T PRK14131 299 NGKLYAHEGLKKSWSDEIYALVNGKWQKVGELPQGL---------------------------------A--YGVSVSWN 343 (376)
T ss_pred cCCcccccCCcceeehheEEecCCcccccCcCCCCc---------------------------------c--ceEEEEeC
Confidence 2456777777777776665544 1 23456899
Q ss_pred CEEEEEceeeEeceEeeeEEEE
Q 035526 500 NHIFGVEMFKIFGQVLDFLTVC 521 (557)
Q Consensus 500 ~~iyvvgG~~~~g~~~~~v~vy 521 (557)
++|||+||....+..+++|++|
T Consensus 344 ~~iyv~GG~~~~~~~~~~v~~~ 365 (376)
T PRK14131 344 NGVLLIGGETAGGKAVSDVTLL 365 (376)
T ss_pred CEEEEEcCCCCCCcEeeeEEEE
Confidence 9999999987456788999999
No 12
>PLN02153 epithiospecifier protein
Probab=99.98 E-value=2.2e-30 Score=270.20 Aligned_cols=243 Identities=16% Similarity=0.174 Sum_probs=185.6
Q ss_pred CCCCceEEccC----CCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCC-cCc
Q 035526 213 VSQDQWHRIDA----SILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMR-YAR 287 (557)
Q Consensus 213 ~~~~~W~~l~~----~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~-~~R 287 (557)
+...+|.+++. +|.+ |..|++++++++|||+||..... ....+++++||+.+++|++++++. .||
T Consensus 4 ~~~~~W~~~~~~~~~~P~p-R~~h~~~~~~~~iyv~GG~~~~~---------~~~~~~~~~yd~~~~~W~~~~~~~~~p~ 73 (341)
T PLN02153 4 TLQGGWIKVEQKGGKGPGP-RCSHGIAVVGDKLYSFGGELKPN---------EHIDKDLYVFDFNTHTWSIAPANGDVPR 73 (341)
T ss_pred ccCCeEEEecCCCCCCCCC-CCcceEEEECCEEEEECCccCCC---------CceeCcEEEEECCCCEEEEcCccCCCCC
Confidence 46778999977 5655 99999999999999999975321 023578999999999999998875 455
Q ss_pred c---cceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc--cC-----CCCCCCc
Q 035526 288 S---MPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SL-----LPNRKSY 357 (557)
Q Consensus 288 ~---~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~-----~~~r~~~ 357 (557)
. .+++++++ + +||++||.. +...++.+++||+.+++|+. ++ |.+|..|
T Consensus 74 ~~~~~~~~~~~~--~----------------~iyv~GG~~----~~~~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~ 131 (341)
T PLN02153 74 ISCLGVRMVAVG--T----------------KLYIFGGRD----EKREFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFH 131 (341)
T ss_pred CccCceEEEEEC--C----------------EEEEECCCC----CCCccCcEEEEECCCCEEEEeccCCCCCCCCCceee
Confidence 3 34444443 3 899999975 34457889999999999997 44 6789999
Q ss_pred eEEEeccchhhhhhccceEEEEEcccCCCC-----CCCceEEEEeCCCCcEEEccCCC---CCCcCceEEEEECCEEEEE
Q 035526 358 KFIRQKSDQSIAKASKRFVLIAVGGLGSWD-----EPLDSGEIYDSVSNKWMEIQRLP---VDFGVVSSGVVCNGIFYVY 429 (557)
Q Consensus 358 ~~~~~~~d~~~~~~~~~~~iyviGG~~~~~-----~~l~~ve~YD~~t~~W~~v~~lp---~~~~~~~~~vv~~g~lYv~ 429 (557)
++++.++ +|||+||..... ..++++++||+.+++|+.+++++ .+|..++ +++++++|||+
T Consensus 132 ~~~~~~~-----------~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~-~~~~~~~iyv~ 199 (341)
T PLN02153 132 SMASDEN-----------HVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAG-FAVVQGKIWVV 199 (341)
T ss_pred EEEEECC-----------EEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcce-EEEECCeEEEE
Confidence 9998886 999999985321 24578999999999999998754 5666655 46789999999
Q ss_pred ecC--------------CeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceE
Q 035526 430 SET--------------EKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAF 495 (557)
Q Consensus 430 GG~--------------~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~ 495 (557)
||. +.+++||+++++|+.++.... +|.++ ..++.
T Consensus 200 GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~------------------------------~P~~r--~~~~~ 247 (341)
T PLN02153 200 YGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGA------------------------------KPSAR--SVFAH 247 (341)
T ss_pred eccccccccCCccceecCceEEEEcCCCcEEeccccCC------------------------------CCCCc--ceeee
Confidence 873 478999999999998875321 12122 23456
Q ss_pred EeeCCEEEEEceeeE--------eceEeeeEEEEecCCCC-CCceecc
Q 035526 496 VADRNHIFGVEMFKI--------FGQVLDFLTVCDVSEKW-MNWSHIS 534 (557)
Q Consensus 496 ~~~~~~iyvvgG~~~--------~g~~~~~v~vy~~~d~~-~~W~~i~ 534 (557)
++.+++|||+||+.. .+..++++.+| |++ ++|+.++
T Consensus 248 ~~~~~~iyv~GG~~~~~~~~~~~~~~~~n~v~~~---d~~~~~W~~~~ 292 (341)
T PLN02153 248 AVVGKYIIIFGGEVWPDLKGHLGPGTLSNEGYAL---DTETLVWEKLG 292 (341)
T ss_pred EEECCEEEEECcccCCccccccccccccccEEEE---EcCccEEEecc
Confidence 688999999999741 13345689999 998 9999886
No 13
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=1.5e-30 Score=287.39 Aligned_cols=243 Identities=16% Similarity=0.240 Sum_probs=197.7
Q ss_pred hhhcccccccccCChhhhhhhhccccCCCeEEEEeeecCC-cccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEE
Q 035526 163 ARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDG-YYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDV 241 (557)
Q Consensus 163 ~~~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~~~-~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~I 241 (557)
+....++|..+...|. .........++.||++||.... ...++++.||+.+++|..+++||.+ |..|++++++++|
T Consensus 269 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~-R~~~~~~~~~~~l 345 (534)
T PHA03098 269 NYSPLSEINTIIDIHY--VYCFGSVVLNNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYP-RKNPGVTVFNNRI 345 (534)
T ss_pred cchhhhhcccccCccc--cccceEEEECCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcc-cccceEEEECCEE
Confidence 3444567777654441 0111223358899999997643 3457899999999999999999876 9999999999999
Q ss_pred EEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEc
Q 035526 242 YVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLG 321 (557)
Q Consensus 242 YViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~G 321 (557)
||+||.... ...+++++|||.+++|+.+++||.+|..+++++++ + ++|++|
T Consensus 346 yv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~~~--~----------------~iYv~G 396 (534)
T PHA03098 346 YVIGGIYNS-----------ISLNTVESWKPGESKWREEPPLIFPRYNPCVVNVN--N----------------LIYVIG 396 (534)
T ss_pred EEEeCCCCC-----------EecceEEEEcCCCCceeeCCCcCcCCccceEEEEC--C----------------EEEEEC
Confidence 999998643 24678999999999999999999999998776655 3 899999
Q ss_pred ccccccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCC--CCCceEEEEe
Q 035526 322 GVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWD--EPLDSGEIYD 397 (557)
Q Consensus 322 G~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~--~~l~~ve~YD 397 (557)
|... +...++++++||+.+++|+. ++|.+|..++++..++ +||++||.+... ...+.+++||
T Consensus 397 G~~~---~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~~~~~~~~~-----------~iyv~GG~~~~~~~~~~~~v~~yd 462 (534)
T PHA03098 397 GISK---NDELLKTVECFSLNTNKWSKGSPLPISHYGGCAIYHDG-----------KIYVIGGISYIDNIKVYNIVESYN 462 (534)
T ss_pred CcCC---CCcccceEEEEeCCCCeeeecCCCCccccCceEEEECC-----------EEEEECCccCCCCCcccceEEEec
Confidence 9642 23347889999999999998 7888999999988886 999999986432 2356799999
Q ss_pred CCCCcEEEccCCCCCCcCceEEEEECCEEEEEecC------CeEEEEECCCCcEEeccCCC
Q 035526 398 SVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET------EKLAGYYIERGFWIGIQTSP 452 (557)
Q Consensus 398 ~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~------~~i~~YD~~~~~W~~i~~~p 452 (557)
+.+++|+.++++|.++..+++ ++.+++|||+||. +.+++||+++++|+.++.+|
T Consensus 463 ~~~~~W~~~~~~~~~r~~~~~-~~~~~~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p 522 (534)
T PHA03098 463 PVTNKWTELSSLNFPRINASL-CIFNNKIYVVGGDKYEYYINEIEVYDDKTNTWTLFCKFP 522 (534)
T ss_pred CCCCceeeCCCCCcccccceE-EEECCEEEEEcCCcCCcccceeEEEeCCCCEEEecCCCc
Confidence 999999999999998887654 6679999999995 48999999999999998754
No 14
>PLN02193 nitrile-specifier protein
Probab=99.97 E-value=2.6e-29 Score=272.41 Aligned_cols=267 Identities=14% Similarity=0.133 Sum_probs=202.3
Q ss_pred CCeEEEEeeecCCcccce--EEEeeCCC----CceEEccCC---CcCcceeeEEEEECCEEEEEcccCCCCCCccccCCc
Q 035526 190 NPWLFLFGAVKDGYYSGE--IHALDVSQ----DQWHRIDAS---ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSS 260 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~--v~~yd~~~----~~W~~l~~~---p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~ 260 (557)
++.|+.|+|.... .... ++.+++.+ ++|..++++ |.+ |..|+++++++.|||+||.....
T Consensus 120 ~~~ivgf~G~~~~-~~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~p-R~~h~~~~~~~~iyv~GG~~~~~--------- 188 (470)
T PLN02193 120 GGKIVGFHGRSTD-VLHSLGAYISLPSTPKLLGKWIKVEQKGEGPGL-RCSHGIAQVGNKIYSFGGEFTPN--------- 188 (470)
T ss_pred CCeEEEEeccCCC-cEEeeEEEEecCCChhhhceEEEcccCCCCCCC-ccccEEEEECCEEEEECCcCCCC---------
Confidence 6778888876432 2334 44457655 799998874 554 99999999999999999975321
Q ss_pred ccccceEEEEecCCCcEEEcccCC-cC---cccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccce
Q 035526 261 FKTHKRVLVFSPLTKSWWKVASMR-YA---RSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLR 336 (557)
Q Consensus 261 ~~~~~~v~~ydp~t~~W~~l~~m~-~~---R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v 336 (557)
....+++|+||+.+++|+.++++. .| |..+++++++ + +||++||.. ....++.+
T Consensus 189 ~~~~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~--~----------------~lYvfGG~~----~~~~~ndv 246 (470)
T PLN02193 189 QPIDKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIG--S----------------TLYVFGGRD----ASRQYNGF 246 (470)
T ss_pred CCeeCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEEC--C----------------EEEEECCCC----CCCCCccE
Confidence 013468999999999999887642 22 3344444443 3 899999975 44567899
Q ss_pred eeccccCCcccc--cC---CCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccC---
Q 035526 337 RQYRNSFDGFEG--SL---LPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR--- 408 (557)
Q Consensus 337 ~~yd~~~~~W~~--~~---~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~--- 408 (557)
++||+.+++|+. ++ |.+|..|++++.++ +||++||.+... .+.++++||+.+++|+.++.
T Consensus 247 ~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~-----------~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~ 314 (470)
T PLN02193 247 YSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEE-----------NVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGD 314 (470)
T ss_pred EEEECCCCEEEEcCcCCCCCCCccceEEEEECC-----------EEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCC
Confidence 999999999998 44 67999999998886 999999987653 67899999999999999864
Q ss_pred CCCCCcCceEEEEECCEEEEEecC-----CeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEccc
Q 035526 409 LPVDFGVVSSGVVCNGIFYVYSET-----EKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSV 483 (557)
Q Consensus 409 lp~~~~~~~~~vv~~g~lYv~GG~-----~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~ 483 (557)
+|.+|..+.+ ++++++||++||. +++++||+++++|+.++.+..++
T Consensus 315 ~~~~R~~~~~-~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P---------------------------- 365 (470)
T PLN02193 315 SFSIRGGAGL-EVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRP---------------------------- 365 (470)
T ss_pred CCCCCCCcEE-EEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCC----------------------------
Confidence 5667777654 6779999999985 58999999999999987652211
Q ss_pred CCCCCCCCCceEEeeCCEEEEEceeeE--------eceEeeeEEEEecCCCC-CCceecccCC
Q 035526 484 HPDAPMDWSAAFVADRNHIFGVEMFKI--------FGQVLDFLTVCDVSEKW-MNWSHISRNH 537 (557)
Q Consensus 484 ~p~~~~~~~~~~~~~~~~iyvvgG~~~--------~g~~~~~v~vy~~~d~~-~~W~~i~~~~ 537 (557)
.++ ..+++++.+++|||+||... .+..++++.+| |++ ++|+.+..+.
T Consensus 366 --~~R--~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~---D~~t~~W~~~~~~~ 421 (470)
T PLN02193 366 --SER--SVFASAAVGKHIVIFGGEIAMDPLAHVGPGQLTDGTFAL---DTETLQWERLDKFG 421 (470)
T ss_pred --CCc--ceeEEEEECCEEEEECCccCCccccccCccceeccEEEE---EcCcCEEEEcccCC
Confidence 112 23455688999999999852 13456789999 999 9999987654
No 15
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.97 E-value=7e-29 Score=259.41 Aligned_cols=244 Identities=13% Similarity=0.055 Sum_probs=178.0
Q ss_pred ccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEec--CCCcEEEcccCC-cCcccceEEEEec
Q 035526 221 IDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSP--LTKSWWKVASMR-YARSMPILGISEV 297 (557)
Q Consensus 221 l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp--~t~~W~~l~~m~-~~R~~~~~~v~~~ 297 (557)
+|+||.+ |..+++|+++++|||+||... +.+++||+ .+++|+++++|| .+|..+++++++
T Consensus 1 ~~~lp~~-~~~~~~~~~~~~vyv~GG~~~---------------~~~~~~d~~~~~~~W~~l~~~p~~~R~~~~~~~~~- 63 (346)
T TIGR03547 1 LPDLPVG-FKNGTGAIIGDKVYVGLGSAG---------------TSWYKLDLKKPSKGWQKIADFPGGPRNQAVAAAID- 63 (346)
T ss_pred CCCCCcc-ccCceEEEECCEEEEEccccC---------------CeeEEEECCCCCCCceECCCCCCCCcccceEEEEC-
Confidence 4677875 887888899999999999632 47899995 678999999999 589887777665
Q ss_pred CCCcccccccCCCCCCCCcEEEEccccccc--CCCCcccceeeccccCCcccc-c--CCCCCCCceEE-Eeccchhhhhh
Q 035526 298 SPEFSIIPCHQSHQDRRFPRSRLGGVSDVY--EDPHRLSLRRQYRNSFDGFEG-S--LLPNRKSYKFI-RQKSDQSIAKA 371 (557)
Q Consensus 298 ~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y--~~~~~l~~v~~yd~~~~~W~~-~--~~~~r~~~~~~-~~~~d~~~~~~ 371 (557)
+ +|||+||....- .....++.+++||+.++.|+. + +|.+|..++++ ++++
T Consensus 64 -~----------------~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g------- 119 (346)
T TIGR03547 64 -G----------------KLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNG------- 119 (346)
T ss_pred -C----------------EEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCC-------
Confidence 3 899999975211 012357899999999999999 3 23345556555 4665
Q ss_pred ccceEEEEEcccCCCC---------------------------------CCCceEEEEeCCCCcEEEccCCCC-CCcCce
Q 035526 372 SKRFVLIAVGGLGSWD---------------------------------EPLDSGEIYDSVSNKWMEIQRLPV-DFGVVS 417 (557)
Q Consensus 372 ~~~~~iyviGG~~~~~---------------------------------~~l~~ve~YD~~t~~W~~v~~lp~-~~~~~~ 417 (557)
+||++||.+... ..++++|+|||.+++|+.+++||. ++..+
T Consensus 120 ----~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~~~~p~~~r~~~- 194 (346)
T TIGR03547 120 ----QAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNLGENPFLGTAGS- 194 (346)
T ss_pred ----EEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeECccCCCCcCCCc-
Confidence 999999985320 014789999999999999999996 45554
Q ss_pred EEEEECCEEEEEecCC-------eEEEEE--CCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCC
Q 035526 418 SGVVCNGIFYVYSETE-------KLAGYY--IERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAP 488 (557)
Q Consensus 418 ~~vv~~g~lYv~GG~~-------~i~~YD--~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~ 488 (557)
++++++++|||+||.. .++.|| +++++|+.+++||.|+... ..
T Consensus 195 ~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~----------------------------~~ 246 (346)
T TIGR03547 195 AIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSS----------------------------QE 246 (346)
T ss_pred eEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCc----------------------------cc
Confidence 4577899999999952 344454 4667888888776654100 00
Q ss_pred CCCCceEEeeCCEEEEEceeeEec----------------eEeeeEEEEecCCCC-CCceecccCCcCcc
Q 035526 489 MDWSAAFVADRNHIFGVEMFKIFG----------------QVLDFLTVCDVSEKW-MNWSHISRNHMDYE 541 (557)
Q Consensus 489 ~~~~~~~~~~~~~iyvvgG~~~~g----------------~~~~~v~vy~~~d~~-~~W~~i~~~~~~~~ 541 (557)
...++..++.+++|||+||++..+ ..+..+++| |++ ++|+.+++||..+.
T Consensus 247 ~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y---d~~~~~W~~~~~lp~~~~ 313 (346)
T TIGR03547 247 GLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVY---ALDNGKWSKVGKLPQGLA 313 (346)
T ss_pred cccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEE---EecCCcccccCCCCCCce
Confidence 112334567899999999986311 123578999 888 99999999988754
No 16
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.96 E-value=1.1e-27 Score=247.98 Aligned_cols=243 Identities=15% Similarity=0.148 Sum_probs=181.0
Q ss_pred cceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEe-cCCC-cEEEcccCCcCcccceEEEEecCCCccccc
Q 035526 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFS-PLTK-SWWKVASMRYARSMPILGISEVSPEFSIIP 305 (557)
Q Consensus 228 ~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~yd-p~t~-~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~ 305 (557)
++.++.++++++.|||+||.+.....- .+.......+++++|+ +..+ +|..+++||.+|..+++++++
T Consensus 3 ~~~g~~~~~~~~~l~v~GG~~~~~~~~-~~~g~~~~~~~v~~~~~~~~~~~W~~~~~lp~~r~~~~~~~~~--------- 72 (323)
T TIGR03548 3 GVAGCYAGIIGDYILVAGGCNFPEDPL-AEGGKKKNYKGIYIAKDENSNLKWVKDGQLPYEAAYGASVSVE--------- 72 (323)
T ss_pred ceeeEeeeEECCEEEEeeccCCCCCch-hhCCcEEeeeeeEEEecCCCceeEEEcccCCccccceEEEEEC---------
Confidence 467888999999999999986532000 0011123456888885 4433 799999999999877666554
Q ss_pred ccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcc----cc--cCCCCCCCceEEEeccchhhhhhccceEEEE
Q 035526 306 CHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGF----EG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIA 379 (557)
Q Consensus 306 ~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W----~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyv 379 (557)
+.||++||.. +...++.+++||+..+.| +. ++|.+|..++++++++ +||+
T Consensus 73 ---------~~lyviGG~~----~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~~~~-----------~iYv 128 (323)
T TIGR03548 73 ---------NGIYYIGGSN----SSERFSSVYRITLDESKEELICETIGNLPFTFENGSACYKDG-----------TLYV 128 (323)
T ss_pred ---------CEEEEEcCCC----CCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEEECC-----------EEEE
Confidence 3899999975 445678999999999998 33 7788899999999886 9999
Q ss_pred EcccCCCCCCCceEEEEeCCCCcEEEccCCCC-CCcCceEEEEECCEEEEEecCC-----eEEEEECCCCcEEeccCCCC
Q 035526 380 VGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPV-DFGVVSSGVVCNGIFYVYSETE-----KLAGYYIERGFWIGIQTSPF 453 (557)
Q Consensus 380 iGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~-~~~~~~~~vv~~g~lYv~GG~~-----~i~~YD~~~~~W~~i~~~p~ 453 (557)
+||..... .++++++||+.+++|+.+++||. +|..+ ++++++++|||+||.+ ++++||+++++|+.+++++.
T Consensus 129 ~GG~~~~~-~~~~v~~yd~~~~~W~~~~~~p~~~r~~~-~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W~~~~~~~~ 206 (323)
T TIGR03548 129 GGGNRNGK-PSNKSYLFNLETQEWFELPDFPGEPRVQP-VCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQWQKVADPTT 206 (323)
T ss_pred EeCcCCCc-cCceEEEEcCCCCCeeECCCCCCCCCCcc-eEEEECCEEEEEcCCCCccccceEEEecCCCeeEECCCCCC
Confidence 99975432 57899999999999999999885 56554 4578899999999963 67899999999999987642
Q ss_pred CCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEec---------------------
Q 035526 454 PPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFG--------------------- 512 (557)
Q Consensus 454 p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g--------------------- 512 (557)
.+ +|... ...+++++.+++||++||++-.+
T Consensus 207 ~~----------------------------~p~~~-~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (323)
T TIGR03548 207 DS----------------------------EPISL-LGAASIKINESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKK 257 (323)
T ss_pred CC----------------------------Cceec-cceeEEEECCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHH
Confidence 21 01011 12334456688999999986210
Q ss_pred ----------eEeeeEEEEecCCCC-CCceecccCCc
Q 035526 513 ----------QVLDFLTVCDVSEKW-MNWSHISRNHM 538 (557)
Q Consensus 513 ----------~~~~~v~vy~~~d~~-~~W~~i~~~~~ 538 (557)
...+.+++| |++ ++|+.+++++.
T Consensus 258 ~~~~~~~~~~~~~~~v~~y---d~~~~~W~~~~~~p~ 291 (323)
T TIGR03548 258 EYFLKPPEWYNWNRKILIY---NVRTGKWKSIGNSPF 291 (323)
T ss_pred HHhCCCccccCcCceEEEE---ECCCCeeeEcccccc
Confidence 013679999 999 99999998774
No 17
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=4.6e-27 Score=248.33 Aligned_cols=250 Identities=11% Similarity=0.051 Sum_probs=180.1
Q ss_pred ceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecC--CCcEEEcccCC-cCcccceEE
Q 035526 217 QWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPL--TKSWWKVASMR-YARSMPILG 293 (557)
Q Consensus 217 ~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~--t~~W~~l~~m~-~~R~~~~~~ 293 (557)
.+..+++||.+ +..+++++++++|||+||... +.+++||+. +++|.++++|| .+|..++++
T Consensus 18 ~~~~l~~lP~~-~~~~~~~~~~~~iyv~gG~~~---------------~~~~~~d~~~~~~~W~~l~~~p~~~r~~~~~v 81 (376)
T PRK14131 18 NAEQLPDLPVP-FKNGTGAIDNNTVYVGLGSAG---------------TSWYKLDLNAPSKGWTKIAAFPGGPREQAVAA 81 (376)
T ss_pred ecccCCCCCcC-ccCCeEEEECCEEEEEeCCCC---------------CeEEEEECCCCCCCeEECCcCCCCCcccceEE
Confidence 46778999876 776788899999999999632 358899986 57999999998 588887666
Q ss_pred EEecCCCcccccccCCCCCCCCcEEEEcccccccCC--CCcccceeeccccCCcccc-c--CCCCCCCceEEE-eccchh
Q 035526 294 ISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYED--PHRLSLRRQYRNSFDGFEG-S--LLPNRKSYKFIR-QKSDQS 367 (557)
Q Consensus 294 v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~--~~~l~~v~~yd~~~~~W~~-~--~~~~r~~~~~~~-~~~d~~ 367 (557)
+++ + .||++||.....++ ...++.+++||+..++|+. + .|.++..|++++ .++
T Consensus 82 ~~~--~----------------~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~--- 140 (376)
T PRK14131 82 FID--G----------------KLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNG--- 140 (376)
T ss_pred EEC--C----------------EEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCC---
Confidence 655 3 89999997531111 1346889999999999999 3 344555666666 565
Q ss_pred hhhhccceEEEEEcccCCCC---------------------------------CCCceEEEEeCCCCcEEEccCCCC-CC
Q 035526 368 IAKASKRFVLIAVGGLGSWD---------------------------------EPLDSGEIYDSVSNKWMEIQRLPV-DF 413 (557)
Q Consensus 368 ~~~~~~~~~iyviGG~~~~~---------------------------------~~l~~ve~YD~~t~~W~~v~~lp~-~~ 413 (557)
+||++||.+... ...+++++||+.+++|+.++++|. ++
T Consensus 141 --------~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~~~~p~~~~ 212 (376)
T PRK14131 141 --------KAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNAGESPFLGT 212 (376)
T ss_pred --------EEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeECCcCCCCCC
Confidence 999999975310 024789999999999999999997 45
Q ss_pred cCceEEEEECCEEEEEecCC-------e--EEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccC
Q 035526 414 GVVSSGVVCNGIFYVYSETE-------K--LAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVH 484 (557)
Q Consensus 414 ~~~~~~vv~~g~lYv~GG~~-------~--i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~ 484 (557)
..+ ++++++++|||+||.. . ...||+++++|..++.||.|+..+
T Consensus 213 ~~~-a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~p~~~~~~-------------------------- 265 (376)
T PRK14131 213 AGS-AVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDLPPAPGGS-------------------------- 265 (376)
T ss_pred Ccc-eEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCCCCCCcCC--------------------------
Confidence 544 4577899999999951 2 334577888888888776654210
Q ss_pred CCCCCCCCceEEeeCCEEEEEceeeEec--------e--------EeeeEEEEecCCCC-CCceecccCCcCccc
Q 035526 485 PDAPMDWSAAFVADRNHIFGVEMFKIFG--------Q--------VLDFLTVCDVSEKW-MNWSHISRNHMDYEL 542 (557)
Q Consensus 485 p~~~~~~~~~~~~~~~~iyvvgG~~~~g--------~--------~~~~v~vy~~~d~~-~~W~~i~~~~~~~~~ 542 (557)
......++..++.+++|||+||.+..+ + ....+++| |++ ++|+.++.||..+..
T Consensus 266 -~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~y---d~~~~~W~~~~~lp~~r~~ 336 (376)
T PRK14131 266 -SQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIY---ALVNGKWQKVGELPQGLAY 336 (376)
T ss_pred -cCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheE---EecCCcccccCcCCCCccc
Confidence 001112223457899999999976311 1 12357889 888 999999999887643
No 18
>PHA02790 Kelch-like protein; Provisional
Probab=99.93 E-value=8.8e-25 Score=237.71 Aligned_cols=190 Identities=16% Similarity=0.234 Sum_probs=157.6
Q ss_pred ccchhhhhhcccccccccCChhhhhhhhccccCCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEE
Q 035526 157 LTSLMNARLVCKKWRYLTTTPRFLQMRREGLHQNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVS 236 (557)
Q Consensus 157 ~~sl~~~~~vck~W~~l~~sp~~~~~~~~~~~~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~ 236 (557)
..+..++++..++|..+++.|... ........++.||++||... ...+..|||.+++|..+++||.+ |..+++++
T Consensus 286 ~~~v~~Ydp~~~~W~~~~~m~~~r-~~~~~v~~~~~iYviGG~~~---~~sve~ydp~~n~W~~~~~l~~~-r~~~~~~~ 360 (480)
T PHA02790 286 HNNAIAVNYISNNWIPIPPMNSPR-LYASGVPANNKLYVVGGLPN---PTSVERWFHGDAAWVNMPSLLKP-RCNPAVAS 360 (480)
T ss_pred CCeEEEEECCCCEEEECCCCCchh-hcceEEEECCEEEEECCcCC---CCceEEEECCCCeEEECCCCCCC-CcccEEEE
Confidence 355667888889999998776311 11122335899999999743 25689999999999999999976 99999999
Q ss_pred ECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCc
Q 035526 237 IMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFP 316 (557)
Q Consensus 237 ~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~ 316 (557)
++|+|||+||..+. .+.+++|||.+++|+.+|+|+.+|..+++++++ | +
T Consensus 361 ~~g~IYviGG~~~~-------------~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~--~----------------~ 409 (480)
T PHA02790 361 INNVIYVIGGHSET-------------DTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFG--R----------------R 409 (480)
T ss_pred ECCEEEEecCcCCC-------------CccEEEEeCCCCEEEeCCCCCCccccceEEEEC--C----------------E
Confidence 99999999997532 257999999999999999999999997666655 4 9
Q ss_pred EEEEcccccccCCCCcccceeeccccCCcccc--cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEE
Q 035526 317 RSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGE 394 (557)
Q Consensus 317 lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve 394 (557)
||++||. +++|||.+|+|+. +++.+|..++++++++ +||++||.++.. .++++|
T Consensus 410 IYv~GG~------------~e~ydp~~~~W~~~~~m~~~r~~~~~~v~~~-----------~IYviGG~~~~~-~~~~ve 465 (480)
T PHA02790 410 LFLVGRN------------AEFYCESSNTWTLIDDPIYPRDNPELIIVDN-----------KLLLIGGFYRGS-YIDTIE 465 (480)
T ss_pred EEEECCc------------eEEecCCCCcEeEcCCCCCCccccEEEEECC-----------EEEEECCcCCCc-ccceEE
Confidence 9999983 4789999999998 7888999999999997 999999987543 468999
Q ss_pred EEeCCCCcEEEc
Q 035526 395 IYDSVSNKWMEI 406 (557)
Q Consensus 395 ~YD~~t~~W~~v 406 (557)
+|||.+++|+..
T Consensus 466 ~Yd~~~~~W~~~ 477 (480)
T PHA02790 466 VYNNRTYSWNIW 477 (480)
T ss_pred EEECCCCeEEec
Confidence 999999999865
No 19
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.91 E-value=8.5e-23 Score=194.60 Aligned_cols=243 Identities=16% Similarity=0.224 Sum_probs=186.1
Q ss_pred CcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEccc-------------CCcCcccceEE
Q 035526 227 KGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVAS-------------MRYARSMPILG 293 (557)
Q Consensus 227 ~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~-------------m~~~R~~~~~~ 293 (557)
|.|..|+++.+++.||-+||+-...-.. .+..-+|.++|..+-+|+++|| .|..|+.+.+.
T Consensus 12 PrRVNHAavaVG~riYSFGGYCsGedy~------~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV 85 (392)
T KOG4693|consen 12 PRRVNHAAVAVGSRIYSFGGYCSGEDYD------AKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVV 85 (392)
T ss_pred cccccceeeeecceEEecCCcccccccc------cCCcceeEEeeccceeEEecCcccccccccCCCCccchhhcCceEE
Confidence 3589999999999999999975432111 1234589999999999999987 34557776554
Q ss_pred EEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhh
Q 035526 294 ISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSI 368 (557)
Q Consensus 294 v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~ 368 (557)
... + ++|+.||.++ +....|....|||.+++|.. -.|.+|.+|+++++++
T Consensus 86 ~y~--d----------------~~yvWGGRND---~egaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn---- 140 (392)
T KOG4693|consen 86 EYQ--D----------------KAYVWGGRND---DEGACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGN---- 140 (392)
T ss_pred EEc--c----------------eEEEEcCccC---cccccceeeeeccccccccccceeeecCCccCCceeeEECc----
Confidence 443 4 8999999874 45678889999999999998 4688999999999997
Q ss_pred hhhccceEEEEEcccCCC-CCCCceEEEEeCCCCcEEEccC--CCC-CCcCceEEEEECCEEEEEecC------------
Q 035526 369 AKASKRFVLIAVGGLGSW-DEPLDSGEIYDSVSNKWMEIQR--LPV-DFGVVSSGVVCNGIFYVYSET------------ 432 (557)
Q Consensus 369 ~~~~~~~~iyviGG~~~~-~~~l~~ve~YD~~t~~W~~v~~--lp~-~~~~~~~~vv~~g~lYv~GG~------------ 432 (557)
.+|++||+... ....+++..+|..|-+|+++.. .|. -|..|. ++++++.+|||||.
T Consensus 141 -------~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~-a~~~~~~MYiFGGR~D~~gpfHs~~e 212 (392)
T KOG4693|consen 141 -------QMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHT-ASVIDGMMYIFGGRSDESGPFHSIHE 212 (392)
T ss_pred -------EEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhh-hhhccceEEEeccccccCCCccchhh
Confidence 99999998543 2467899999999999999954 333 344444 57789999999995
Q ss_pred ---CeEEEEECCCCcEEeccCCCC---CCccc---ccCCEEEEEcC--C-----------CccCcCcEEEccc---CCCC
Q 035526 433 ---EKLAGYYIERGFWIGIQTSPF---PPCVI---EYYPKLVSWAR--S-----------HVPQLECWTKVSV---HPDA 487 (557)
Q Consensus 433 ---~~i~~YD~~~~~W~~i~~~p~---p~~~~---~~~~~lv~~~g--G-----------~~~~~~~W~~v~~---~p~~ 487 (557)
+.|..+|..|+.|..-++-+. .++.| .|++++++++| | .++++..|..+.. -|.+
T Consensus 213 ~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~a 292 (392)
T KOG4693|consen 213 QYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSA 292 (392)
T ss_pred hhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCc
Confidence 389999999999998765443 23333 47899999876 2 1677999999854 4444
Q ss_pred CCCCCceEEeeCCEEEEEceeeE
Q 035526 488 PMDWSAAFVADRNHIFGVEMFKI 510 (557)
Q Consensus 488 ~~~~~~~~~~~~~~iyvvgG~~~ 510 (557)
+.+. ..++.++++|++||...
T Consensus 293 RRRq--C~~v~g~kv~LFGGTsP 313 (392)
T KOG4693|consen 293 RRRQ--CSVVSGGKVYLFGGTSP 313 (392)
T ss_pred ccce--eEEEECCEEEEecCCCC
Confidence 4332 34578999999999753
No 20
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=99.90 E-value=5.9e-23 Score=195.70 Aligned_cols=238 Identities=17% Similarity=0.175 Sum_probs=185.2
Q ss_pred CCCeEEEEeeecCCc-----ccceEEEeeCCCCceEEccC-------------CCcCcceeeEEEEECCEEEEEcccCCC
Q 035526 189 QNPWLFLFGAVKDGY-----YSGEIHALDVSQDQWHRIDA-------------SILKGRFMFSVVSIMDDVYVVGGCSSL 250 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~-----~~~~v~~yd~~~~~W~~l~~-------------~p~~~R~~~s~a~~~~~IYViGG~~~~ 250 (557)
.+..||-|||+..+. ..-+++++|..+-+|..+|+ .|- .|++|+++.+++++||.||.+..
T Consensus 22 VG~riYSFGGYCsGedy~~~~piDVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPy-qRYGHtvV~y~d~~yvWGGRND~ 100 (392)
T KOG4693|consen 22 VGSRIYSFGGYCSGEDYDAKDPIDVHVLNAENYRWTKMPPGITKATIESPYPAVPY-QRYGHTVVEYQDKAYVWGGRNDD 100 (392)
T ss_pred ecceEEecCCcccccccccCCcceeEEeeccceeEEecCcccccccccCCCCccch-hhcCceEEEEcceEEEEcCccCc
Confidence 488999999975442 34579999999999999887 122 39999999999999999999874
Q ss_pred CCCccccCCcccccceEEEEecCCCcEEEcc---cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEccccccc
Q 035526 251 TSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVY 327 (557)
Q Consensus 251 ~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~---~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y 327 (557)
. ...+.++.|||.|+.|.+.. -.|.+|..+++++++ +.+|+|||+...
T Consensus 101 e----------gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~g------------------n~MyiFGGye~~- 151 (392)
T KOG4693|consen 101 E----------GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWG------------------NQMYIFGGYEED- 151 (392)
T ss_pred c----------cccceeeeeccccccccccceeeecCCccCCceeeEEC------------------cEEEEecChHHH-
Confidence 3 35678999999999998642 467899999999987 478999998521
Q ss_pred CCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCC--------CCCceEE
Q 035526 328 EDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWD--------EPLDSGE 394 (557)
Q Consensus 328 ~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~--------~~l~~ve 394 (557)
.....+.+..+|..+-+|+. ..|.-|..|++.++++ .+|++||+.... ...+.+.
T Consensus 152 -a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~-----------~MYiFGGR~D~~gpfHs~~e~Yc~~i~ 219 (392)
T KOG4693|consen 152 -AQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDG-----------MMYIFGGRSDESGPFHSIHEQYCDTIM 219 (392)
T ss_pred -HHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccc-----------eEEEeccccccCCCccchhhhhcceeE
Confidence 12234556678999999987 4455677899999887 999999985432 2446788
Q ss_pred EEeCCCCcEEEccC---CCCCCcCceEEEEECCEEEEEecC--------CeEEEEECCCCcEEeccCC---CCCCccc--
Q 035526 395 IYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSET--------EKLAGYYIERGFWIGIQTS---PFPPCVI-- 458 (557)
Q Consensus 395 ~YD~~t~~W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~--------~~i~~YD~~~~~W~~i~~~---p~p~~~~-- 458 (557)
.+|..|..|...++ .|..|..|+ +.++|++||+|||+ +++++|||.+..|..|..- |.+++.+
T Consensus 220 ~ld~~T~aW~r~p~~~~~P~GRRSHS-~fvYng~~Y~FGGYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~ 298 (392)
T KOG4693|consen 220 ALDLATGAWTRTPENTMKPGGRRSHS-TFVYNGKMYMFGGYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCS 298 (392)
T ss_pred EEeccccccccCCCCCcCCCcccccc-eEEEcceEEEecccchhhhhhhcceeecccccchheeeeccCCCCCcccceeE
Confidence 99999999998854 567777765 47889999999997 4899999999999998753 3333322
Q ss_pred -ccCCEEEEEcC
Q 035526 459 -EYYPKLVSWAR 469 (557)
Q Consensus 459 -~~~~~lv~~~g 469 (557)
..+++++.++|
T Consensus 299 ~v~g~kv~LFGG 310 (392)
T KOG4693|consen 299 VVSGGKVYLFGG 310 (392)
T ss_pred EEECCEEEEecC
Confidence 24677777765
No 21
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.86 E-value=3.5e-20 Score=201.11 Aligned_cols=219 Identities=17% Similarity=0.251 Sum_probs=181.9
Q ss_pred CCeEEEEeeecCCcccc--eEEEeeCCCCceEEccCC---CcCcceeeEEEEECCEEEEEcccCCCCCCccccCCccccc
Q 035526 190 NPWLFLFGAVKDGYYSG--EIHALDVSQDQWHRIDAS---ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTH 264 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~--~v~~yd~~~~~W~~l~~~---p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~ 264 (557)
++.+|||||...+.... +++.+|..+..|.....- |. +|.+|++++++++||++||..... ...
T Consensus 70 ~~~~~vfGG~~~~~~~~~~dl~~~d~~~~~w~~~~~~g~~p~-~r~g~~~~~~~~~l~lfGG~~~~~----------~~~ 138 (482)
T KOG0379|consen 70 GNKLYVFGGYGSGDRLTDLDLYVLDLESQLWTKPAATGDEPS-PRYGHSLSAVGDKLYLFGGTDKKY----------RNL 138 (482)
T ss_pred CCEEEEECCCCCCCccccceeEEeecCCcccccccccCCCCC-cccceeEEEECCeEEEEccccCCC----------CCh
Confidence 88999999986654333 599999999999876542 43 599999999999999999987521 346
Q ss_pred ceEEEEecCCCcEEEcc---cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccc
Q 035526 265 KRVLVFSPLTKSWWKVA---SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRN 341 (557)
Q Consensus 265 ~~v~~ydp~t~~W~~l~---~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~ 341 (557)
++++.||+.|++|+.+. .+|.+|..|++++++ .++||+||... ....++.+++||+
T Consensus 139 ~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g------------------~~l~vfGG~~~---~~~~~ndl~i~d~ 197 (482)
T KOG0379|consen 139 NELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVG------------------TKLVVFGGIGG---TGDSLNDLHIYDL 197 (482)
T ss_pred hheEeccCCCCcEEEecCcCCCCCCcccceEEEEC------------------CEEEEECCccC---cccceeeeeeecc
Confidence 79999999999999875 467889998888876 38999999863 2227999999999
Q ss_pred cCCcccc-----cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEcc---CCCCCC
Q 035526 342 SFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDF 413 (557)
Q Consensus 342 ~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~---~lp~~~ 413 (557)
.+.+|.. +.|.||.+|+++++++ +++++||.+.....+++++++|..+.+|..+. .+|.+|
T Consensus 198 ~~~~W~~~~~~g~~P~pR~gH~~~~~~~-----------~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~~~g~~p~~R 266 (482)
T KOG0379|consen 198 ETSTWSELDTQGEAPSPRYGHAMVVVGN-----------KLLVFGGGDDGDVYLNDVHILDLSTWEWKLLPTGGDLPSPR 266 (482)
T ss_pred ccccceecccCCCCCCCCCCceEEEECC-----------eEEEEeccccCCceecceEeeecccceeeeccccCCCCCCc
Confidence 9999998 6778999999999997 99999998855558999999999999999774 488899
Q ss_pred cCceEEEEECCEEEEEecCC--------eEEEEECCCCcEEeccCCC
Q 035526 414 GVVSSGVVCNGIFYVYSETE--------KLAGYYIERGFWIGIQTSP 452 (557)
Q Consensus 414 ~~~~~~vv~~g~lYv~GG~~--------~i~~YD~~~~~W~~i~~~p 452 (557)
..|.. ++.+..++++||.. .++.||.+++.|..+....
T Consensus 267 ~~h~~-~~~~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 267 SGHSL-TVSGDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred ceeee-EEECCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 98776 48899999999852 5677888888888877654
No 22
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.85 E-value=5.7e-20 Score=199.42 Aligned_cols=235 Identities=19% Similarity=0.166 Sum_probs=187.3
Q ss_pred CcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc---cCCcCcccceEEEEecCCCc
Q 035526 225 ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA---SMRYARSMPILGISEVSPEF 301 (557)
Q Consensus 225 p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~---~m~~~R~~~~~~v~~~~g~~ 301 (557)
|.+ |..|+++.+++++||+||.....+.. ..++|++|..+..|...+ ..|.+|..+.+++++
T Consensus 58 p~~-R~~hs~~~~~~~~~vfGG~~~~~~~~---------~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~----- 122 (482)
T KOG0379|consen 58 PIP-RAGHSAVLIGNKLYVFGGYGSGDRLT---------DLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVG----- 122 (482)
T ss_pred cch-hhccceeEECCEEEEECCCCCCCccc---------cceeEEeecCCcccccccccCCCCCcccceeEEEEC-----
Confidence 444 99999999999999999987653211 116999999999998754 356788888777776
Q ss_pred ccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhhhhhccceE
Q 035526 302 SIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFV 376 (557)
Q Consensus 302 ~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~ 376 (557)
++||++||... ....++.+..||+.+++|+. ..|++|.+|++++.+. +
T Consensus 123 -------------~~l~lfGG~~~---~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~-----------~ 175 (482)
T KOG0379|consen 123 -------------DKLYLFGGTDK---KYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGT-----------K 175 (482)
T ss_pred -------------CeEEEEccccC---CCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECC-----------E
Confidence 49999999874 23347889999999999987 5688999999999997 9
Q ss_pred EEEEcccCCCCCCCceEEEEeCCCCcEEEcc---CCCCCCcCceEEEEECCEEEEEecC-------CeEEEEECCCCcEE
Q 035526 377 LIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDFGVVSSGVVCNGIFYVYSET-------EKLAGYYIERGFWI 446 (557)
Q Consensus 377 iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~---~lp~~~~~~~~~vv~~g~lYv~GG~-------~~i~~YD~~~~~W~ 446 (557)
|||+||.+.....++++++||+++.+|.++. ..|.+|..|.+ ++++++++++||. ++++.+|+.+.+|.
T Consensus 176 l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~-~~~~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~ 254 (482)
T KOG0379|consen 176 LVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAM-VVVGNKLLVFGGGDDGDVYLNDVHILDLSTWEWK 254 (482)
T ss_pred EEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceE-EEECCeEEEEeccccCCceecceEeeecccceee
Confidence 9999999877668999999999999999984 46778888765 7789999999986 38999999999998
Q ss_pred eccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEece-EeeeEEEEecCC
Q 035526 447 GIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQ-VLDFLTVCDVSE 525 (557)
Q Consensus 447 ~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~-~~~~v~vy~~~d 525 (557)
.+..... +|.+++.+ ..+..+++++++||...... .+..+..+ |
T Consensus 255 ~~~~~g~------------------------------~p~~R~~h--~~~~~~~~~~l~gG~~~~~~~~l~~~~~l---~ 299 (482)
T KOG0379|consen 255 LLPTGGD------------------------------LPSPRSGH--SLTVSGDHLLLFGGGTDPKQEPLGDLYGL---D 299 (482)
T ss_pred eccccCC------------------------------CCCCccee--eeEEECCEEEEEcCCcccccccccccccc---c
Confidence 6654322 23334343 44488999999999983323 57788888 7
Q ss_pred CC-CCceecccCC
Q 035526 526 KW-MNWSHISRNH 537 (557)
Q Consensus 526 ~~-~~W~~i~~~~ 537 (557)
.+ ..|..+..+.
T Consensus 300 ~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 300 LETLVWSKVESVG 312 (482)
T ss_pred ccccceeeeeccc
Confidence 77 9999887766
No 23
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.85 E-value=8.5e-21 Score=194.28 Aligned_cols=275 Identities=17% Similarity=0.223 Sum_probs=191.8
Q ss_pred ccccccCChhhhhhhhcccc---CCCeEEEEeeecCCcccceEEEeeCCCCceEEc---cCCCcCcceeeEEEEECCEEE
Q 035526 169 KWRYLTTTPRFLQMRREGLH---QNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRI---DASILKGRFMFSVVSIMDDVY 242 (557)
Q Consensus 169 ~W~~l~~sp~~~~~~~~~~~---~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l---~~~p~~~R~~~s~a~~~~~IY 242 (557)
+|+............|..++ ..+.|++|||.+++ ..++++.||..+++|..- ..+|. +...|+.+..+.+||
T Consensus 18 rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGGNEG-iiDELHvYNTatnqWf~PavrGDiPp-gcAA~GfvcdGtril 95 (830)
T KOG4152|consen 18 RWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGGNEG-IIDELHVYNTATNQWFAPAVRGDIPP-GCAAFGFVCDGTRIL 95 (830)
T ss_pred ceEEEecccCCCCCccccchheeeeeeEEEecCCccc-chhhhhhhccccceeecchhcCCCCC-chhhcceEecCceEE
Confidence 67776543222222222222 38899999997654 568899999999999652 22443 478899999999999
Q ss_pred EEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc-------cCCcCcccceEEEEecCCCcccccccCCCCCCCC
Q 035526 243 VVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA-------SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRF 315 (557)
Q Consensus 243 ViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~-------~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~ 315 (557)
+|||....+ +.++++|......-.|+++. +.|.||..|++.+.. +
T Consensus 96 vFGGMvEYG----------kYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~g------------------n 147 (830)
T KOG4152|consen 96 VFGGMVEYG----------KYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVG------------------N 147 (830)
T ss_pred EEccEeeec----------cccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEec------------------c
Confidence 999987764 56778777666666777764 367889999888876 4
Q ss_pred cEEEEcccccccCC-----CCcccceeecccc----CCcccc-----cCCCCCCCceEEEeccchhhhhhccceEEEEEc
Q 035526 316 PRSRLGGVSDVYED-----PHRLSLRRQYRNS----FDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVG 381 (557)
Q Consensus 316 ~lyv~GG~~~~y~~-----~~~l~~v~~yd~~----~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviG 381 (557)
+.|+|||....-+| +++++++...... .-.|.. ..|++|.+|.++.+.. +|+..-++||+|
T Consensus 148 KcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e-----KDs~~skmvvyG 222 (830)
T KOG4152|consen 148 KCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE-----KDSKKSKMVVYG 222 (830)
T ss_pred EeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe-----ccCCcceEEEEc
Confidence 88999998644333 3446666554443 225766 7889999999999843 344455999999
Q ss_pred ccCCCCCCCceEEEEeCCCCcEEEcc---CCCCCCcCceEEEEECCEEEEEecCC--------------------eEEEE
Q 035526 382 GLGSWDEPLDSGEIYDSVSNKWMEIQ---RLPVDFGVVSSGVVCNGIFYVYSETE--------------------KLAGY 438 (557)
Q Consensus 382 G~~~~~~~l~~ve~YD~~t~~W~~v~---~lp~~~~~~~~~vv~~g~lYv~GG~~--------------------~i~~Y 438 (557)
|..+. .+.+.|.+|+++-.|.+.. -.|.+|..|.+ +++++++|||||.- .+-+.
T Consensus 223 GM~G~--RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa-~~IGnKMyvfGGWVPl~~~~~~~~~hekEWkCTssl~cl 299 (830)
T KOG4152|consen 223 GMSGC--RLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSA-TTIGNKMYVFGGWVPLVMDDVKVATHEKEWKCTSSLACL 299 (830)
T ss_pred ccccc--cccceeEEecceeecccccccCCCCCCcccccc-eeecceeEEecceeeeeccccccccccceeeeccceeee
Confidence 99876 7999999999999999873 25667777665 77899999999961 44455
Q ss_pred ECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceee
Q 035526 439 YIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFK 509 (557)
Q Consensus 439 D~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~ 509 (557)
|+.+..|+.+-.-... -..+| +.+.|+..+++++++|+.-|.+
T Consensus 300 Nldt~~W~tl~~d~~e--------------------------d~tiP--R~RAGHCAvAigtRlYiWSGRD 342 (830)
T KOG4152|consen 300 NLDTMAWETLLMDTLE--------------------------DNTIP--RARAGHCAVAIGTRLYIWSGRD 342 (830)
T ss_pred eecchheeeeeecccc--------------------------ccccc--cccccceeEEeccEEEEEeccc
Confidence 5555555443210000 01123 3445666778999999888876
No 24
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.83 E-value=1.5e-19 Score=181.72 Aligned_cols=226 Identities=15% Similarity=0.186 Sum_probs=178.0
Q ss_pred CCeEEEEeeec-CC---cccceEEEeeCCCCceEEccCC-CcCcceeeEEEEEC-CEEEEEcccCCCCCCccccCCcccc
Q 035526 190 NPWLFLFGAVK-DG---YYSGEIHALDVSQDQWHRIDAS-ILKGRFMFSVVSIM-DDVYVVGGCSSLTSFGRVDGSSFKT 263 (557)
Q Consensus 190 ~~~L~v~GG~~-~~---~~~~~v~~yd~~~~~W~~l~~~-p~~~R~~~s~a~~~-~~IYViGG~~~~~~~~~~~~~~~~~ 263 (557)
.+-|++|||.- ++ ...++++.||..++.|..+.+. ++++|+.|.++++. |.+|++||.... .....|..
T Consensus 78 keELilfGGEf~ngqkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s~~l~~fGGEfaS-----Pnq~qF~H 152 (521)
T KOG1230|consen 78 KEELILFGGEFYNGQKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPSNILWLFGGEFAS-----PNQEQFHH 152 (521)
T ss_pred cceeEEecceeecceeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEeccCeEEEeccccCC-----cchhhhhh
Confidence 45799999952 22 2578999999999999987553 23349999887775 899999997543 12234566
Q ss_pred cceEEEEecCCCcEEEcc--cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccc
Q 035526 264 HKRVLVFSPLTKSWWKVA--SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRN 341 (557)
Q Consensus 264 ~~~v~~ydp~t~~W~~l~--~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~ 341 (557)
-+++|.||..|++|.++. .-|.||++|-+.+.. +++++|||.-+.-.+.++.|.+.+||.
T Consensus 153 YkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK------------------~~lilFGGFhd~nr~y~YyNDvy~FdL 214 (521)
T KOG1230|consen 153 YKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWK------------------RQLILFGGFHDSNRDYIYYNDVYAFDL 214 (521)
T ss_pred hhheeeeeeccchheeeccCCCCCCCccceeEEee------------------eeEEEEcceecCCCceEEeeeeEEEec
Confidence 789999999999999975 567899997776655 489999998644335567999999999
Q ss_pred cCCcccc-----cCCCCCCCceEEEe-ccchhhhhhccceEEEEEcccCCC--------CCCCceEEEEeCCC-----Cc
Q 035526 342 SFDGFEG-----SLLPNRKSYKFIRQ-KSDQSIAKASKRFVLIAVGGLGSW--------DEPLDSGEIYDSVS-----NK 402 (557)
Q Consensus 342 ~~~~W~~-----~~~~~r~~~~~~~~-~~d~~~~~~~~~~~iyviGG~~~~--------~~~l~~ve~YD~~t-----~~ 402 (557)
.+-+|++ ..|.+|+++.+.+. .+ .|||.||+... +..+.+++..+|.. =.
T Consensus 215 dtykW~Klepsga~PtpRSGcq~~vtpqg-----------~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~ 283 (521)
T KOG1230|consen 215 DTYKWSKLEPSGAGPTPRSGCQFSVTPQG-----------GIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDKWV 283 (521)
T ss_pred cceeeeeccCCCCCCCCCCcceEEecCCC-----------cEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCccee
Confidence 9999998 45789999999988 44 99999998421 23678999999998 46
Q ss_pred EEEccC---CCCCCcCceEEEEECCEEEEEecC---------------CeEEEEECCCCcEEecc
Q 035526 403 WMEIQR---LPVDFGVVSSGVVCNGIFYVYSET---------------EKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 403 W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~---------------~~i~~YD~~~~~W~~i~ 449 (557)
|+.+.+ -|.+|.+++.++.-+++-|.|||- |+++.||+..+.|...+
T Consensus 284 W~kvkp~g~kPspRsgfsv~va~n~kal~FGGV~D~eeeeEsl~g~F~NDLy~fdlt~nrW~~~q 348 (521)
T KOG1230|consen 284 WTKVKPSGVKPSPRSGFSVAVAKNHKALFFGGVCDLEEEEESLSGEFFNDLYFFDLTRNRWSEGQ 348 (521)
T ss_pred EeeccCCCCCCCCCCceeEEEecCCceEEecceecccccchhhhhhhhhhhhheecccchhhHhh
Confidence 888865 477888877767778899999994 58999999999999753
No 25
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.76 E-value=1.5e-17 Score=167.37 Aligned_cols=240 Identities=16% Similarity=0.115 Sum_probs=169.0
Q ss_pred CcCcceeeEEEEE--CCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEc--ccCCcCcccceEEEEecCCC
Q 035526 225 ILKGRFMFSVVSI--MDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKV--ASMRYARSMPILGISEVSPE 300 (557)
Q Consensus 225 p~~~R~~~s~a~~--~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l--~~m~~~R~~~~~~v~~~~g~ 300 (557)
|.| |..+++++. .+.|+++||..-++ .....-++++.||..+++|+++ |..|.||+.|.++++..
T Consensus 64 Psp-Rsn~sl~~nPekeELilfGGEf~ng-------qkT~vYndLy~Yn~k~~eWkk~~spn~P~pRsshq~va~~s--- 132 (521)
T KOG1230|consen 64 PSP-RSNPSLFANPEKEELILFGGEFYNG-------QKTHVYNDLYSYNTKKNEWKKVVSPNAPPPRSSHQAVAVPS--- 132 (521)
T ss_pred CCC-CCCcceeeccCcceeEEecceeecc-------eeEEEeeeeeEEeccccceeEeccCCCcCCCccceeEEecc---
Confidence 444 888887764 56999999964432 1223568999999999999986 56778899887776651
Q ss_pred cccccccCCCCCCCCcEEEEcccccccC--CCCcccceeeccccCCcccc----cCCCCCCCceEEEeccchhhhhhccc
Q 035526 301 FSIIPCHQSHQDRRFPRSRLGGVSDVYE--DPHRLSLRRQYRNSFDGFEG----SLLPNRKSYKFIRQKSDQSIAKASKR 374 (557)
Q Consensus 301 ~~~~~~~~~~~~~r~~lyv~GG~~~~y~--~~~~l~~v~~yd~~~~~W~~----~~~~~r~~~~~~~~~~d~~~~~~~~~ 374 (557)
+.+|++||.-.-=+ .=+--...+.+|..+++|+. .-|.+|++|.+++.+.
T Consensus 133 --------------~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g~PS~RSGHRMvawK~---------- 188 (521)
T KOG1230|consen 133 --------------NILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGGGPSPRSGHRMVAWKR---------- 188 (521)
T ss_pred --------------CeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCCCCCCCccceeEEeee----------
Confidence 27899999521100 01224567889999999998 5678999999999997
Q ss_pred eEEEEEcccCCCC---CCCceEEEEeCCCCcEEEccC---CCCCCcCceEEEEECCEEEEEecCC---------------
Q 035526 375 FVLIAVGGLGSWD---EPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSETE--------------- 433 (557)
Q Consensus 375 ~~iyviGG~~~~~---~~l~~ve~YD~~t~~W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~~--------------- 433 (557)
+|+++||+.... .+.+++++||+.+=+|+.+.+ .|.+|++++..+.-.|.|||+||+.
T Consensus 189 -~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK~~~kK~~dKG~~hs 267 (521)
T KOG1230|consen 189 -QLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSKQRVKKDVDKGTRHS 267 (521)
T ss_pred -eEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhHhhhhhhhhcCceee
Confidence 999999985432 467999999999999999954 5889999887677799999999973
Q ss_pred eEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEccc---CCCCCCCCCceEE-eeCCEEEEEcee-
Q 035526 434 KLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSV---HPDAPMDWSAAFV-ADRNHIFGVEMF- 508 (557)
Q Consensus 434 ~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~---~p~~~~~~~~~~~-~~~~~iyvvgG~- 508 (557)
+++..+++++. . +.=+|+++.+ -|.++ .|.+++ +-+++-|.+||.
T Consensus 268 Dmf~L~p~~~~---------------------------~-dKw~W~kvkp~g~kPspR--sgfsv~va~n~kal~FGGV~ 317 (521)
T KOG1230|consen 268 DMFLLKPEDGR---------------------------E-DKWVWTKVKPSGVKPSPR--SGFSVAVAKNHKALFFGGVC 317 (521)
T ss_pred eeeeecCCcCC---------------------------C-cceeEeeccCCCCCCCCC--CceeEEEecCCceEEeccee
Confidence 45555554410 0 0224555422 12222 344443 445588888885
Q ss_pred e-------EeceEeeeEEEEecCCCC-CCceec
Q 035526 509 K-------IFGQVLDFLTVCDVSEKW-MNWSHI 533 (557)
Q Consensus 509 ~-------~~g~~~~~v~vy~~~d~~-~~W~~i 533 (557)
+ ..|...+++..| |-+ ++|...
T Consensus 318 D~eeeeEsl~g~F~NDLy~f---dlt~nrW~~~ 347 (521)
T KOG1230|consen 318 DLEEEEESLSGEFFNDLYFF---DLTRNRWSEG 347 (521)
T ss_pred cccccchhhhhhhhhhhhhe---ecccchhhHh
Confidence 2 124555777888 888 999754
No 26
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.65 E-value=2.7e-15 Score=154.27 Aligned_cols=243 Identities=14% Similarity=0.163 Sum_probs=173.0
Q ss_pred chhhhhhcccccccccCChhhhhhhhccc--cCCCeEEEEeeecC-CcccceEEEeeCCCCceEEccC------CCcCcc
Q 035526 159 SLMNARLVCKKWRYLTTTPRFLQMRREGL--HQNPWLFLFGAVKD-GYYSGEIHALDVSQDQWHRIDA------SILKGR 229 (557)
Q Consensus 159 sl~~~~~vck~W~~l~~sp~~~~~~~~~~--~~~~~L~v~GG~~~-~~~~~~v~~yd~~~~~W~~l~~------~p~~~R 229 (557)
.|-.++...++|..-..-...+......+ ..+..|++|||.-+ +..+++++-+....=.|.++.+ +|+-+|
T Consensus 58 ELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPR 137 (830)
T KOG4152|consen 58 ELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPR 137 (830)
T ss_pred hhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCc
Confidence 34556777888965433322222222222 24788999999643 4566666554444445666654 222349
Q ss_pred eeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCC----cEEEc---ccCCcCcccceEEEEecCCCcc
Q 035526 230 FMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTK----SWWKV---ASMRYARSMPILGISEVSPEFS 302 (557)
Q Consensus 230 ~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~----~W~~l---~~m~~~R~~~~~~v~~~~g~~~ 302 (557)
.+|+...++++-|+|||...... ...++-...++++|+.+..-+ -|... ..+|.+|..|.+.+..
T Consensus 138 lGHSFsl~gnKcYlFGGLaNdse--DpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~------ 209 (830)
T KOG4152|consen 138 LGHSFSLVGNKCYLFGGLANDSE--DPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYT------ 209 (830)
T ss_pred cCceeEEeccEeEEecccccccc--CcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEE------
Confidence 99999999999999999755421 112233467899999987744 48653 3678899998777663
Q ss_pred cccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhhhhhccceEE
Q 035526 303 IIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVL 377 (557)
Q Consensus 303 ~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~i 377 (557)
.+.....++||+||++ .-++.+.+..|..+-.|++ ..|.+|+-|++..+++ |+
T Consensus 210 ------eKDs~~skmvvyGGM~-----G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~IGn-----------KM 267 (830)
T KOG4152|consen 210 ------EKDSKKSKMVVYGGMS-----GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTIGN-----------KM 267 (830)
T ss_pred ------eccCCcceEEEEcccc-----cccccceeEEecceeecccccccCCCCCCcccccceeecc-----------ee
Confidence 1222335899999985 4689999999999999998 4678999999999997 99
Q ss_pred EEEcccCC--------------CCCCCceEEEEeCCCCcEEEcc-------CCCCCCcCceEEEEECCEEEEEecCC
Q 035526 378 IAVGGLGS--------------WDEPLDSGEIYDSVSNKWMEIQ-------RLPVDFGVVSSGVVCNGIFYVYSETE 433 (557)
Q Consensus 378 yviGG~~~--------------~~~~l~~ve~YD~~t~~W~~v~-------~lp~~~~~~~~~vv~~g~lYv~GG~~ 433 (557)
||+||+-. | .+.++.-++++.+..|+.+- ..|.+|.+||+ +.++.+||+-.|.+
T Consensus 268 yvfGGWVPl~~~~~~~~~hekEW-kCTssl~clNldt~~W~tl~~d~~ed~tiPR~RAGHCA-vAigtRlYiWSGRD 342 (830)
T KOG4152|consen 268 YVFGGWVPLVMDDVKVATHEKEW-KCTSSLACLNLDTMAWETLLMDTLEDNTIPRARAGHCA-VAIGTRLYIWSGRD 342 (830)
T ss_pred EEecceeeeecccccccccccee-eeccceeeeeecchheeeeeecccccccccccccccee-EEeccEEEEEeccc
Confidence 99999721 1 25678889999999999872 27888999886 66799999999863
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.58 E-value=3.2e-13 Score=134.99 Aligned_cols=281 Identities=16% Similarity=0.173 Sum_probs=176.9
Q ss_pred CCCeEEEEeeecCCcccceEEEeeCCC--CceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccce
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALDVSQ--DQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKR 266 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~--~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~ 266 (557)
.+..+||-=|.. -..++..|... ..|+.++..|...|.....++++++|||+||...... +..+..++
T Consensus 45 ig~~~YVGLGs~----G~afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~------~~~~~~nd 114 (381)
T COG3055 45 IGDTVYVGLGSA----GTAFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIGGKLYVFGGYGKSVS------SSPQVFND 114 (381)
T ss_pred ecceEEEEeccC----CccceehhhhcCCCCceEcccCCCcccccchheeeCCeEEEeeccccCCC------CCceEeee
Confidence 466777754432 23466666654 5799999999888999999999999999999765421 22356789
Q ss_pred EEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccc-c------------------
Q 035526 267 VLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDV-Y------------------ 327 (557)
Q Consensus 267 v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~-y------------------ 327 (557)
+++|||.+++|.++.. ..|+....+..+..++ .++|++||++.. |
T Consensus 115 ~Y~y~p~~nsW~kl~t-~sP~gl~G~~~~~~~~---------------~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~ 178 (381)
T COG3055 115 AYRYDPSTNSWHKLDT-RSPTGLVGASTFSLNG---------------TKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVD 178 (381)
T ss_pred eEEecCCCChhheecc-ccccccccceeEecCC---------------ceEEEEccccHHhhhhhHHhhhhhcccHHHHH
Confidence 9999999999999853 3344443333333222 389999998521 1
Q ss_pred -------C----CCCcccceeeccccCCcccc--cCCC-CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceE
Q 035526 328 -------E----DPHRLSLRRQYRNSFDGFEG--SLLP-NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSG 393 (557)
Q Consensus 328 -------~----~~~~l~~v~~yd~~~~~W~~--~~~~-~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~v 393 (557)
+ +-.....+..|+|..++|.. ..|. ++++.+++..++ ++.+|-|.-...-+...+
T Consensus 179 ~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf~~~aGsa~~~~~n-----------~~~lInGEiKpGLRt~~~ 247 (381)
T COG3055 179 KIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPFYGNAGSAVVIKGN-----------KLTLINGEIKPGLRTAEV 247 (381)
T ss_pred HHHHHHhCCCHHHhcccccccccccccchhhhcCcCcccCccCcceeecCC-----------eEEEEcceecCCccccce
Confidence 0 11124556689999999998 4554 555544443343 788888874433356678
Q ss_pred EEEeCCCC--cEEEccCCCCCCcCceE------EEEECCEEEEEecCC---eEEEEECCCCcEEeccCCCCCCcccccCC
Q 035526 394 EIYDSVSN--KWMEIQRLPVDFGVVSS------GVVCNGIFYVYSETE---KLAGYYIERGFWIGIQTSPFPPCVIEYYP 462 (557)
Q Consensus 394 e~YD~~t~--~W~~v~~lp~~~~~~~~------~vv~~g~lYv~GG~~---~i~~YD~~~~~W~~i~~~p~p~~~~~~~~ 462 (557)
.+++...+ +|..++++|.+.....- .-..++.+.|.||.+ ....|. .+.|-.-+.+ ...++.
T Consensus 248 k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf~G~s~~~~lv~GGAnF~Ga~~~y~--~Gk~~AH~Gl-----~K~w~~ 320 (381)
T COG3055 248 KQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAFSGKSNGEVLVAGGANFPGALKAYK--NGKFYAHEGL-----SKSWNS 320 (381)
T ss_pred eEEEeccCceeeeeccCCCCCCCCCccccceeccceeCCeEEEecCCCChhHHHHHH--hcccccccch-----hhhhhc
Confidence 88887744 79999888876543211 123578888888863 111110 1111110000 011334
Q ss_pred EEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEE
Q 035526 463 KLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVC 521 (557)
Q Consensus 463 ~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy 521 (557)
.++.+. .+.|..++.||.. ...+ +.+..++.||+|||..-.|+.+..|...
T Consensus 321 ~Vy~~d------~g~Wk~~GeLp~~-l~YG-~s~~~nn~vl~IGGE~~~Gka~~~v~~l 371 (381)
T COG3055 321 EVYIFD------NGSWKIVGELPQG-LAYG-VSLSYNNKVLLIGGETSGGKATTRVYSL 371 (381)
T ss_pred eEEEEc------CCceeeecccCCC-ccce-EEEecCCcEEEEccccCCCeeeeeEEEE
Confidence 444442 4567777777763 2334 3457899999999998677777766554
No 28
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.19 E-value=3.8e-10 Score=113.21 Aligned_cols=220 Identities=17% Similarity=0.178 Sum_probs=137.7
Q ss_pred EccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecC--CCcEEEcccCCc-CcccceEEEEe
Q 035526 220 RIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPL--TKSWWKVASMRY-ARSMPILGISE 296 (557)
Q Consensus 220 ~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~--t~~W~~l~~m~~-~R~~~~~~v~~ 296 (557)
.+|.+|.+-..+ +-+.+++.+||-=|..+. ..+..|.. .+.|++++..|. +|.....+++.
T Consensus 29 ~lPdlPvg~KnG-~Ga~ig~~~YVGLGs~G~---------------afy~ldL~~~~k~W~~~a~FpG~~rnqa~~a~~~ 92 (381)
T COG3055 29 QLPDLPVGFKNG-AGALIGDTVYVGLGSAGT---------------AFYVLDLKKPGKGWTKIADFPGGARNQAVAAVIG 92 (381)
T ss_pred cCCCCCcccccc-ccceecceEEEEeccCCc---------------cceehhhhcCCCCceEcccCCCcccccchheeeC
Confidence 457777653333 556678899998774433 56666654 468999998874 55554444433
Q ss_pred cCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccccCCCCCCCceEEEeccchhhhhhccceE
Q 035526 297 VSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFV 376 (557)
Q Consensus 297 ~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~ 376 (557)
+ +
T Consensus 93 --~----------------------------------------------------------------------------k 94 (381)
T COG3055 93 --G----------------------------------------------------------------------------K 94 (381)
T ss_pred --C----------------------------------------------------------------------------e
Confidence 1 5
Q ss_pred EEEEcccCCCC----CCCceEEEEeCCCCcEEEccC-CCCCCcCceEEEEECC-EEEEEecCC---------eEEEEECC
Q 035526 377 LIAVGGLGSWD----EPLDSGEIYDSVSNKWMEIQR-LPVDFGVVSSGVVCNG-IFYVYSETE---------KLAGYYIE 441 (557)
Q Consensus 377 iyviGG~~~~~----~~l~~ve~YD~~t~~W~~v~~-lp~~~~~~~~~vv~~g-~lYv~GG~~---------~i~~YD~~ 441 (557)
||++||.+... ..++++++|||.+|+|+.+.. .|.....+. ++.+++ +||++||.+ ++-.-+-+
T Consensus 95 LyvFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t~sP~gl~G~~-~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d 173 (381)
T COG3055 95 LYVFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDTRSPTGLVGAS-TFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKD 173 (381)
T ss_pred EEEeeccccCCCCCceEeeeeEEecCCCChhheeccccccccccce-eEecCCceEEEEccccHHhhhhhHHhhhhhccc
Confidence 66666553322 246899999999999999965 566655544 466676 999999963 22222222
Q ss_pred CCcEEeccC--CCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEE
Q 035526 442 RGFWIGIQT--SPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLT 519 (557)
Q Consensus 442 ~~~W~~i~~--~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~ 519 (557)
...|..+-. |..++.-.-++..+. ++.|.+++|..+...|-.+ .++++++..++++.+|.|+--.|-....+.
T Consensus 174 ~~~~~~i~~~yf~~~~~dy~~n~ev~----sy~p~~n~W~~~G~~pf~~-~aGsa~~~~~n~~~lInGEiKpGLRt~~~k 248 (381)
T COG3055 174 KEAVDKIIAHYFDKKAEDYFFNKEVL----SYDPSTNQWRNLGENPFYG-NAGSAVVIKGNKLTLINGEIKPGLRTAEVK 248 (381)
T ss_pred HHHHHHHHHHHhCCCHHHhccccccc----ccccccchhhhcCcCcccC-ccCcceeecCCeEEEEcceecCCcccccee
Confidence 233333322 111111111111222 3567777888777766543 456777778888999999865677777777
Q ss_pred EEecCCCCCCceecccCCcC
Q 035526 520 VCDVSEKWMNWSHISRNHMD 539 (557)
Q Consensus 520 vy~~~d~~~~W~~i~~~~~~ 539 (557)
++++.+....|..++.++..
T Consensus 249 ~~~~~~~~~~w~~l~~lp~~ 268 (381)
T COG3055 249 QADFGGDNLKWLKLSDLPAP 268 (381)
T ss_pred EEEeccCceeeeeccCCCCC
Confidence 77666555889999887765
No 29
>PF13964 Kelch_6: Kelch motif
Probab=99.15 E-value=6.9e-11 Score=87.41 Aligned_cols=50 Identities=28% Similarity=0.444 Sum_probs=44.9
Q ss_pred cceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCc
Q 035526 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYAR 287 (557)
Q Consensus 228 ~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R 287 (557)
+|.+|++++++++|||+||.... ...++++++|||.|++|+++++||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~----------~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS----------GKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC----------CCccccEEEEcCCCCcEEECCCCCCCC
Confidence 38899999999999999998763 146789999999999999999999987
No 30
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.90 E-value=2.5e-09 Score=77.79 Aligned_cols=47 Identities=26% Similarity=0.492 Sum_probs=41.8
Q ss_pred cceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCC
Q 035526 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMR 284 (557)
Q Consensus 228 ~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~ 284 (557)
+|..|++++++++|||+||..... ..++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~----------~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNN----------QPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTS----------SBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECCEEEEEeeecccC----------ceeeeEEEEeCCCCEEEEcCCCC
Confidence 389999999999999999988722 47889999999999999999986
No 31
>PF13964 Kelch_6: Kelch motif
Probab=98.89 E-value=4.5e-09 Score=77.64 Aligned_cols=50 Identities=18% Similarity=0.290 Sum_probs=44.7
Q ss_pred CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCC
Q 035526 353 NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDF 413 (557)
Q Consensus 353 ~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~ 413 (557)
+|..|+++++++ +||++||.......++++++||+++++|+.+++||.+|
T Consensus 1 pR~~~s~v~~~~-----------~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGG-----------KIYVFGGYDNSGKYSNDVERYDPETNTWEQLPPMPTPR 50 (50)
T ss_pred CCccCEEEEECC-----------EEEEECCCCCCCCccccEEEEcCCCCcEEECCCCCCCC
Confidence 578899999987 99999999874458899999999999999999999875
No 32
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=98.74 E-value=6.1e-07 Score=88.32 Aligned_cols=125 Identities=14% Similarity=0.191 Sum_probs=76.4
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC------eEEEEECCCCcEEe-c
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE------KLAGYYIERGFWIG-I 448 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~------~i~~YD~~~~~W~~-i 448 (557)
||+.+....... ....+++|++.+++|+.+...+........++.+||.||.+.... .|.+||+++++|.. +
T Consensus 56 KVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~~~~~~~~~~~v~~~G~lyw~~~~~~~~~~~~IvsFDl~~E~f~~~i 134 (230)
T TIGR01640 56 KVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECSPPHHPLKSRGVCINGVLYYLAYTLKTNPDYFIVSFDVSSERFKEFI 134 (230)
T ss_pred EEEEEEeecCCC-CCccEEEEEeCCCCccccccCCCCccccCCeEEECCEEEEEEEECCCCCcEEEEEEEcccceEeeee
Confidence 555554321111 235799999999999999753332111122578899999987421 69999999999995 4
Q ss_pred cCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-
Q 035526 449 QTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW- 527 (557)
Q Consensus 449 ~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~- 527 (557)
+. |.... . ......++..+++|.++.... . .+.+++|.+.|.+
T Consensus 135 ~~-P~~~~--~-----------------------------~~~~~~L~~~~G~L~~v~~~~-~---~~~~~IWvl~d~~~ 178 (230)
T TIGR01640 135 PL-PCGNS--D-----------------------------SVDYLSLINYKGKLAVLKQKK-D---TNNFDLWVLNDAGK 178 (230)
T ss_pred ec-Ccccc--c-----------------------------cccceEEEEECCEEEEEEecC-C---CCcEEEEEECCCCC
Confidence 32 22110 0 001234556678887665543 1 1347888777776
Q ss_pred CCceecccCC
Q 035526 528 MNWSHISRNH 537 (557)
Q Consensus 528 ~~W~~i~~~~ 537 (557)
..|++.-+.+
T Consensus 179 ~~W~k~~~i~ 188 (230)
T TIGR01640 179 QEWSKLFTVP 188 (230)
T ss_pred CceeEEEEEc
Confidence 7798754443
No 33
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.69 E-value=1.8e-08 Score=73.27 Aligned_cols=47 Identities=26% Similarity=0.531 Sum_probs=42.1
Q ss_pred CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCC
Q 035526 353 NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (557)
Q Consensus 353 ~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp 410 (557)
+|..|+++++++ +||++||.+.....++++++||+.+++|+.+++||
T Consensus 1 pR~~~~~~~~~~-----------~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~mp 47 (47)
T PF01344_consen 1 PRSGHAAVVVGN-----------KIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPMP 47 (47)
T ss_dssp -BBSEEEEEETT-----------EEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEES
T ss_pred CCccCEEEEECC-----------EEEEEeeecccCceeeeEEEEeCCCCEEEEcCCCC
Confidence 578899999997 99999999885568999999999999999999886
No 34
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.61 E-value=9.5e-08 Score=70.22 Aligned_cols=49 Identities=27% Similarity=0.447 Sum_probs=40.1
Q ss_pred cceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCC
Q 035526 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMR 284 (557)
Q Consensus 228 ~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~ 284 (557)
+|..|++++++++|||+||.... ......+++++||+.+++|+.+++|+
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~--------~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTD--------NGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECCEEEEECCcccC--------CCCcccceeEEEECCCCEEeecCCCC
Confidence 48899999999999999999111 01136789999999999999999875
No 35
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.59 E-value=6.1e-08 Score=71.15 Aligned_cols=47 Identities=32% Similarity=0.512 Sum_probs=31.1
Q ss_pred cceeeEEEEE-CCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCC
Q 035526 228 GRFMFSVVSI-MDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMR 284 (557)
Q Consensus 228 ~R~~~s~a~~-~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~ 284 (557)
+|..|+++.+ ++.|||+||.+... ...+++|+||+.+++|+++++||
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~----------~~~~d~~~~d~~~~~W~~~~~~P 48 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSG----------SPLNDLWIFDIETNTWTRLPSMP 48 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-T----------EE---EEEEETTTTEEEE--SS-
T ss_pred CcceEEEEEEeCCeEEEECCCCCCC----------cccCCEEEEECCCCEEEECCCCC
Confidence 3889999988 58999999987652 36789999999999999998887
No 36
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.54 E-value=5.7e-08 Score=100.89 Aligned_cols=179 Identities=14% Similarity=0.175 Sum_probs=116.6
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccC---CCcCcceeeEEEEECC--EEEEEcccCCCCCCccccCCccccc
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDA---SILKGRFMFSVVSIMD--DVYVVGGCSSLTSFGRVDGSSFKTH 264 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~---~p~~~R~~~s~a~~~~--~IYViGG~~~~~~~~~~~~~~~~~~ 264 (557)
++.||+.||.++-....++|.|+...+.|..+.. .|.. |.-|-++..-. +||+.|-+-+.+.-. .+..-
T Consensus 272 ~~CiYLYGGWdG~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~-RsCHRMVid~S~~KLYLlG~Y~~sS~r~-----~~s~R 345 (723)
T KOG2437|consen 272 TECVYLYGGWDGTQDLADFWAYSVKENQWTCINRDTEGPGA-RSCHRMVIDISRRKLYLLGRYLDSSVRN-----SKSLR 345 (723)
T ss_pred CcEEEEecCcccchhHHHHHhhcCCcceeEEeecCCCCCcc-hhhhhhhhhhhHhHHhhhhhcccccccc-----ccccc
Confidence 6799999999877778899999999999987654 4554 88888877655 999999987654222 22456
Q ss_pred ceEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCC
Q 035526 265 KRVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD 344 (557)
Q Consensus 265 ~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~ 344 (557)
.++|+||..++.|.-+.--..+-.+| ..+++
T Consensus 346 sDfW~FDi~~~~W~~ls~dt~~dGGP-~~vfD------------------------------------------------ 376 (723)
T KOG2437|consen 346 SDFWRFDIDTNTWMLLSEDTAADGGP-KLVFD------------------------------------------------ 376 (723)
T ss_pred cceEEEecCCceeEEecccccccCCc-ceeec------------------------------------------------
Confidence 78999999999998764322222222 12222
Q ss_pred cccccCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCC--CCCCceEEEEeCCCCcEEEccC----------CCCC
Q 035526 345 GFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSW--DEPLDSGEIYDSVSNKWMEIQR----------LPVD 412 (557)
Q Consensus 345 ~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~--~~~l~~ve~YD~~t~~W~~v~~----------lp~~ 412 (557)
|.+++... ++-|||+||..-. .....-.+.||.....|..... ....
T Consensus 377 ------------HqM~Vd~~---------k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~s 435 (723)
T KOG2437|consen 377 ------------HQMCVDSE---------KHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQS 435 (723)
T ss_pred ------------ceeeEecC---------cceEEEecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHH
Confidence 33333332 1248888886322 1245678999999999987632 1122
Q ss_pred CcCceEE-EEECCEEEEEecCC------eEEEEECCCCc
Q 035526 413 FGVVSSG-VVCNGIFYVYSETE------KLAGYYIERGF 444 (557)
Q Consensus 413 ~~~~~~~-vv~~g~lYv~GG~~------~i~~YD~~~~~ 444 (557)
|.+++.- ..-+..+|++||.. -..+||+....
T Consensus 436 R~ghcmE~~~~n~~ly~fggq~s~~El~L~f~y~I~~E~ 474 (723)
T KOG2437|consen 436 RIGHCMEFHSKNRCLYVFGGQRSKTELNLFFSYDIDSEH 474 (723)
T ss_pred HHHHHHHhcCCCCeEEeccCcccceEEeehhcceecccc
Confidence 3333332 34578899999973 44566665443
No 37
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.52 E-value=1.9e-07 Score=68.59 Aligned_cols=48 Identities=23% Similarity=0.317 Sum_probs=40.7
Q ss_pred CCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEE
Q 035526 238 MDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGI 294 (557)
Q Consensus 238 ~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v 294 (557)
+++|||+||.+... ....+++|+||+.+++|++++++|.+|..|++++
T Consensus 1 g~~~~vfGG~~~~~---------~~~~nd~~~~~~~~~~W~~~~~~P~~R~~h~~~~ 48 (49)
T PF13415_consen 1 GNKLYVFGGYDDDG---------GTRLNDVWVFDLDTNTWTRIGDLPPPRSGHTATV 48 (49)
T ss_pred CCEEEEECCcCCCC---------CCEecCEEEEECCCCEEEECCCCCCCccceEEEE
Confidence 57899999988311 1467899999999999999999999999987765
No 38
>smart00612 Kelch Kelch domain.
Probab=98.44 E-value=3.1e-07 Score=66.16 Aligned_cols=46 Identities=33% Similarity=0.478 Sum_probs=39.0
Q ss_pred EEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcCcccceEEEEe
Q 035526 240 DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYARSMPILGISE 296 (557)
Q Consensus 240 ~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~ 296 (557)
+|||+||..+. ...+++++|||.+++|+.+++|+.+|..+++++++
T Consensus 1 ~iyv~GG~~~~-----------~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~~ 46 (47)
T smart00612 1 KIYVVGGFDGG-----------QRLKSVEVYDPETNKWTPLPSMPTPRSGHGVAVIN 46 (47)
T ss_pred CEEEEeCCCCC-----------ceeeeEEEECCCCCeEccCCCCCCccccceEEEeC
Confidence 48999998653 25679999999999999999999999998776653
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.42 E-value=6e-07 Score=65.92 Aligned_cols=47 Identities=15% Similarity=0.302 Sum_probs=40.6
Q ss_pred CCCCceEEEeccchhhhhhccceEEEEEccc--CCCCCCCceEEEEeCCCCcEEEccCCC
Q 035526 353 NRKSYKFIRQKSDQSIAKASKRFVLIAVGGL--GSWDEPLDSGEIYDSVSNKWMEIQRLP 410 (557)
Q Consensus 353 ~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~--~~~~~~l~~ve~YD~~t~~W~~v~~lp 410 (557)
+|..|+++++++ +||++||. +......+++++||+++++|+.++++|
T Consensus 1 ~r~~hs~~~~~~-----------kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~~g 49 (49)
T PF07646_consen 1 PRYGHSAVVLDG-----------KIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSPMG 49 (49)
T ss_pred CccceEEEEECC-----------EEEEECCcccCCCCcccceeEEEECCCCEEeecCCCC
Confidence 578899999987 99999999 333457899999999999999998875
No 40
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=98.36 E-value=3.3e-07 Score=95.33 Aligned_cols=168 Identities=13% Similarity=0.080 Sum_probs=114.7
Q ss_pred cEEEEcccccccCCCCcccceeeccccCCcccc-----cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCC---
Q 035526 316 PRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG-----SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWD--- 387 (557)
Q Consensus 316 ~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~-----~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~--- 387 (557)
-+|..||++ |...+...+.|....|+|+. ..|-.|.+|.++...+ +.|+|+.|-+-+..
T Consensus 274 CiYLYGGWd----G~~~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCHRMVid~S---------~~KLYLlG~Y~~sS~r~ 340 (723)
T KOG2437|consen 274 CVYLYGGWD----GTQDLADFWAYSVKENQWTCINRDTEGPGARSCHRMVIDIS---------RRKLYLLGRYLDSSVRN 340 (723)
T ss_pred EEEEecCcc----cchhHHHHHhhcCCcceeEEeecCCCCCcchhhhhhhhhhh---------HhHHhhhhhcccccccc
Confidence 789999986 77889999999999999998 4666899999886442 23899999763221
Q ss_pred --CCCceEEEEeCCCCcEEEccC------CCCCCcCceEEEEECCE--EEEEecC---------CeEEEEECCCCcEEec
Q 035526 388 --EPLDSGEIYDSVSNKWMEIQR------LPVDFGVVSSGVVCNGI--FYVYSET---------EKLAGYYIERGFWIGI 448 (557)
Q Consensus 388 --~~l~~ve~YD~~t~~W~~v~~------lp~~~~~~~~~vv~~g~--lYv~GG~---------~~i~~YD~~~~~W~~i 448 (557)
....++|+||..++.|.-+.- -|.....|.. +|.+.+ |||+||. ..+++||.....|..+
T Consensus 341 ~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM-~Vd~~k~~iyVfGGr~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 341 SKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQM-CVDSEKHMIYVFGGRILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred ccccccceEEEecCCceeEEecccccccCCcceeeccee-eEecCcceEEEecCeeccCCCccccceEEEecCCccHHHH
Confidence 234689999999999998742 2444445554 555655 9999996 3799999999999876
Q ss_pred cCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEE
Q 035526 449 QTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVC 521 (557)
Q Consensus 449 ~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy 521 (557)
..-- .. .+++|- .+ ..++.+-+-+...+.++|+.||.. ....++....|
T Consensus 420 ~e~~-~~-----~~~vvE--~~---------------~sR~ghcmE~~~~n~~ly~fggq~-s~~El~L~f~y 468 (723)
T KOG2437|consen 420 REDS-CN-----AGPVVE--DI---------------QSRIGHCMEFHSKNRCLYVFGGQR-SKTELNLFFSY 468 (723)
T ss_pred HHHH-hh-----cCcchh--HH---------------HHHHHHHHHhcCCCCeEEeccCcc-cceEEeehhcc
Confidence 5310 00 011111 00 012223333457788999999876 45555555556
No 41
>smart00612 Kelch Kelch domain.
Probab=98.35 E-value=7.7e-07 Score=64.05 Aligned_cols=47 Identities=32% Similarity=0.535 Sum_probs=39.1
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNG 424 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g 424 (557)
+||++||.... ..++++++||+.+++|+.+++||.++..+++ ++++|
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~-~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPSMPTPRSGHGV-AVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCCCCCccccceE-EEeCC
Confidence 48999998653 3688999999999999999999999988654 55553
No 42
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.33 E-value=5.2e-07 Score=66.18 Aligned_cols=49 Identities=22% Similarity=0.365 Sum_probs=30.6
Q ss_pred CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCC
Q 035526 353 NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPV 411 (557)
Q Consensus 353 ~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~ 411 (557)
+|..|+++.+.+ ++||++||.+.....++++++||+++++|++++++|.
T Consensus 1 pR~~h~~~~~~~----------~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~~P~ 49 (49)
T PF13418_consen 1 PRYGHSAVSIGD----------NSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPSMPS 49 (49)
T ss_dssp --BS-EEEEE-T----------TEEEEE--EEE-TEE---EEEEETTTTEEEE--SS--
T ss_pred CcceEEEEEEeC----------CeEEEECCCCCCCcccCCEEEEECCCCEEEECCCCCC
Confidence 588899988853 2999999997765589999999999999999988873
No 43
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.27 E-value=1.7e-06 Score=63.48 Aligned_cols=47 Identities=21% Similarity=0.396 Sum_probs=40.8
Q ss_pred CCeEEEEeeec--CCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEE
Q 035526 190 NPWLFLFGAVK--DGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI 237 (557)
Q Consensus 190 ~~~L~v~GG~~--~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~ 237 (557)
++.||||||.. .+..+++++.||+.+++|++++++|.+ |.+|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~~~P~~-R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIGDLPPP-RSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECCCCCCC-ccceEEEEC
Confidence 46799999987 456789999999999999999888875 999998864
No 44
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.98 E-value=0.00068 Score=66.91 Aligned_cols=160 Identities=12% Similarity=0.063 Sum_probs=99.0
Q ss_pred eEEEEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccC--
Q 035526 266 RVLVFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSF-- 343 (557)
Q Consensus 266 ~v~~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~-- 343 (557)
.-..|||.|++++.+.-....-+ +.+.+-.+| .+.+.||... -...++.|+|..
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FC--Sgg~~L~dG----------------~ll~tGG~~~------G~~~ir~~~p~~~~ 102 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFC--SGGAFLPDG----------------RLLQTGGDND------GNKAIRIFTPCTSD 102 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcc--cCcCCCCCC----------------CEEEeCCCCc------cccceEEEecCCCC
Confidence 46789999999997754322222 122333344 8899999642 334556677654
Q ss_pred --Ccccc---cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCC-----cEEEccC----C
Q 035526 344 --DGFEG---SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN-----KWMEIQR----L 409 (557)
Q Consensus 344 --~~W~~---~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~-----~W~~v~~----l 409 (557)
..|.+ .|..+|-..++..+.+ |+++|+||... ...|.|.+... .|..+.. .
T Consensus 103 ~~~~w~e~~~~m~~~RWYpT~~~L~D----------G~vlIvGG~~~-----~t~E~~P~~~~~~~~~~~~~l~~~~~~~ 167 (243)
T PF07250_consen 103 GTCDWTESPNDMQSGRWYPTATTLPD----------GRVLIVGGSNN-----PTYEFWPPKGPGPGPVTLPFLSQTSDTL 167 (243)
T ss_pred CCCCceECcccccCCCccccceECCC----------CCEEEEeCcCC-----CcccccCCccCCCCceeeecchhhhccC
Confidence 57877 4677888888888765 69999999863 23455544221 2322322 2
Q ss_pred CCCCcCceEEEEECCEEEEEecCCeEEEEECCCCcE-EeccCCCCCCcccccCCEEEE
Q 035526 410 PVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFW-IGIQTSPFPPCVIEYYPKLVS 466 (557)
Q Consensus 410 p~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~W-~~i~~~p~p~~~~~~~~~lv~ 466 (557)
+...+- ..-+.-+|+||+++.. .-..||+.++++ ..++.+|-..+..-..+..|.
T Consensus 168 ~~nlYP-~~~llPdG~lFi~an~-~s~i~d~~~n~v~~~lP~lPg~~R~YP~sgssvm 223 (243)
T PF07250_consen 168 PNNLYP-FVHLLPDGNLFIFANR-GSIIYDYKTNTVVRTLPDLPGGPRNYPASGSSVM 223 (243)
T ss_pred ccccCc-eEEEcCCCCEEEEEcC-CcEEEeCCCCeEEeeCCCCCCCceecCCCcceEE
Confidence 222222 2236679999999987 567789999987 678887754332223344444
No 45
>PF13854 Kelch_5: Kelch motif
Probab=97.80 E-value=4.8e-05 Score=53.84 Aligned_cols=40 Identities=20% Similarity=0.304 Sum_probs=32.9
Q ss_pred CcCcceeeEEEEECCEEEEEcccCC-CCCCccccCCcccccceEEEEecCCC
Q 035526 225 ILKGRFMFSVVSIMDDVYVVGGCSS-LTSFGRVDGSSFKTHKRVLVFSPLTK 275 (557)
Q Consensus 225 p~~~R~~~s~a~~~~~IYViGG~~~-~~~~~~~~~~~~~~~~~v~~ydp~t~ 275 (557)
|.+ |..|++++++++|||+||..+ .. ...+++|+||..+.
T Consensus 2 P~~-R~~hs~~~~~~~iyi~GG~~~~~~----------~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 2 PSP-RYGHSAVVVGNNIYIFGGYSGNNN----------SYSNDLYVLDLPSF 42 (42)
T ss_pred CCC-ccceEEEEECCEEEEEcCccCCCC----------CEECcEEEEECCCC
Confidence 444 999999999999999999884 21 46789999998763
No 46
>PLN02772 guanylate kinase
Probab=97.73 E-value=0.00019 Score=75.08 Aligned_cols=58 Identities=17% Similarity=0.146 Sum_probs=43.7
Q ss_pred cceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc---cCCcCcccceEEEE
Q 035526 228 GRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA---SMRYARSMPILGIS 295 (557)
Q Consensus 228 ~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~---~m~~~R~~~~~~v~ 295 (557)
++..++++.+++++||+||.+... +..+.+++||+.|++|...+ ..|.||.+|+++++
T Consensus 24 ~~~~~tav~igdk~yv~GG~~d~~----------~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~ 84 (398)
T PLN02772 24 PKNRETSVTIGDKTYVIGGNHEGN----------TLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVL 84 (398)
T ss_pred CCCcceeEEECCEEEEEcccCCCc----------cccceEEEEECCCCcEecccccCCCCCCCCcceEEEE
Confidence 488899999999999999977642 24679999999999998643 34455555544444
No 47
>PLN02772 guanylate kinase
Probab=97.65 E-value=0.0003 Score=73.74 Aligned_cols=80 Identities=13% Similarity=0.103 Sum_probs=63.1
Q ss_pred CCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEc---cCCCCCCcCceEEEEECCEEEE
Q 035526 352 PNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEI---QRLPVDFGVVSSGVVCNGIFYV 428 (557)
Q Consensus 352 ~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v---~~lp~~~~~~~~~vv~~g~lYv 428 (557)
.++.+++++.+++ ++||+||.+......+.+++||..+++|... ...|.++.+|+++++-+++|+|
T Consensus 23 ~~~~~~tav~igd-----------k~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv 91 (398)
T PLN02772 23 KPKNRETSVTIGD-----------KTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILV 91 (398)
T ss_pred CCCCcceeEEECC-----------EEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEE
Confidence 3677899999997 9999999876433568999999999999976 4578888888876666899999
Q ss_pred EecC----CeEEEEECCC
Q 035526 429 YSET----EKLAGYYIER 442 (557)
Q Consensus 429 ~GG~----~~i~~YD~~~ 442 (557)
+++. +.++...+.|
T Consensus 92 ~~~~~~~~~~~w~l~~~t 109 (398)
T PLN02772 92 IKKGSAPDDSIWFLEVDT 109 (398)
T ss_pred EeCCCCCccceEEEEcCC
Confidence 9853 3555555544
No 48
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.65 E-value=0.0069 Score=59.43 Aligned_cols=193 Identities=12% Similarity=0.079 Sum_probs=104.3
Q ss_pred ceEEEeeCCCCceEEccCCCcC----cceeeEEEE--E-C-CEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcE
Q 035526 206 GEIHALDVSQDQWHRIDASILK----GRFMFSVVS--I-M-DDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSW 277 (557)
Q Consensus 206 ~~v~~yd~~~~~W~~l~~~p~~----~R~~~s~a~--~-~-~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W 277 (557)
..+..+||.|++|..+|+.+.+ .+..++... . + =+|..+...... .....+++|+..+++|
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~-----------~~~~~~~Vys~~~~~W 82 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGN-----------RNQSEHQVYTLGSNSW 82 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCC-----------CCCccEEEEEeCCCCc
Confidence 4689999999999999875432 110011111 0 0 144443322110 1234789999999999
Q ss_pred EEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc--cCCCCCC
Q 035526 278 WKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG--SLLPNRK 355 (557)
Q Consensus 278 ~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~--~~~~~r~ 355 (557)
+.+.+.+..-.....+++ .+| .+|-+.... .......+-.||....+|.. ++|....
T Consensus 83 r~~~~~~~~~~~~~~~v~-~~G----------------~lyw~~~~~----~~~~~~~IvsFDl~~E~f~~~i~~P~~~~ 141 (230)
T TIGR01640 83 RTIECSPPHHPLKSRGVC-ING----------------VLYYLAYTL----KTNPDYFIVSFDVSSERFKEFIPLPCGNS 141 (230)
T ss_pred cccccCCCCccccCCeEE-ECC----------------EEEEEEEEC----CCCCcEEEEEEEcccceEeeeeecCcccc
Confidence 998643211110001222 233 455444211 10111256679999999994 5554332
Q ss_pred ----CceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEe-CCCCcEEEccCCCC---CCc---CceEEEEECC
Q 035526 356 ----SYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYD-SVSNKWMEIQRLPV---DFG---VVSSGVVCNG 424 (557)
Q Consensus 356 ----~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD-~~t~~W~~v~~lp~---~~~---~~~~~vv~~g 424 (557)
...++.+++ +|.++....... .-++++.+ .....|+..-.++. ... .....+..+|
T Consensus 142 ~~~~~~~L~~~~G-----------~L~~v~~~~~~~--~~~IWvl~d~~~~~W~k~~~i~~~~~~~~~~~~~~~~~~~~g 208 (230)
T TIGR01640 142 DSVDYLSLINYKG-----------KLAVLKQKKDTN--NFDLWVLNDAGKQEWSKLFTVPIPPLPDLVDDNFLSGFTDKG 208 (230)
T ss_pred ccccceEEEEECC-----------EEEEEEecCCCC--cEEEEEECCCCCCceeEEEEEcCcchhhhhhheeEeEEeeCC
Confidence 234455554 887776543211 13566664 44567997644331 111 1134567789
Q ss_pred EEEEEecC--Ce-EEEEECCCC
Q 035526 425 IFYVYSET--EK-LAGYYIERG 443 (557)
Q Consensus 425 ~lYv~GG~--~~-i~~YD~~~~ 443 (557)
+|.+.... .. +..||++++
T Consensus 209 ~I~~~~~~~~~~~~~~y~~~~~ 230 (230)
T TIGR01640 209 EIVLCCEDENPFYIFYYNVGEN 230 (230)
T ss_pred EEEEEeCCCCceEEEEEeccCC
Confidence 98887764 23 999999875
No 49
>PF13854 Kelch_5: Kelch motif
Probab=97.45 E-value=0.00028 Score=49.91 Aligned_cols=41 Identities=12% Similarity=0.030 Sum_probs=35.1
Q ss_pred CCCCCCCceEEEeccchhhhhhccceEEEEEcccCC-CCCCCceEEEEeCCCC
Q 035526 350 LLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGS-WDEPLDSGEIYDSVSN 401 (557)
Q Consensus 350 ~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~-~~~~l~~ve~YD~~t~ 401 (557)
+|.+|..|+++++++ +||++||... .....+++++||..+.
T Consensus 1 ~P~~R~~hs~~~~~~-----------~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGN-----------NIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECC-----------EEEEEcCccCCCCCEECcEEEEECCCC
Confidence 478999999999987 9999999984 4457899999998763
No 50
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=97.42 E-value=0.002 Score=63.56 Aligned_cols=150 Identities=15% Similarity=0.102 Sum_probs=95.6
Q ss_pred eEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCC----CcEEEcc-
Q 035526 207 EIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLT----KSWWKVA- 281 (557)
Q Consensus 207 ~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t----~~W~~l~- 281 (557)
.-..||+.++++..+......-..++ +..-+|.+.++||.... .+.+-.|+|.+ ..|.+.+
T Consensus 47 ~s~~yD~~tn~~rpl~v~td~FCSgg-~~L~dG~ll~tGG~~~G-------------~~~ir~~~p~~~~~~~~w~e~~~ 112 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQTDTFCSGG-AFLPDGRLLQTGGDNDG-------------NKAIRIFTPCTSDGTCDWTESPN 112 (243)
T ss_pred EEEEEecCCCcEEeccCCCCCcccCc-CCCCCCCEEEeCCCCcc-------------ccceEEEecCCCCCCCCceECcc
Confidence 34679999999988765322212222 22347899999997553 24677888876 6898876
Q ss_pred cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCC---cccccC------CC
Q 035526 282 SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFD---GFEGSL------LP 352 (557)
Q Consensus 282 ~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~---~W~~~~------~~ 352 (557)
.|..+|..+++..+. +| +++|+||.. ..+.|.+.+... .+..+. ..
T Consensus 113 ~m~~~RWYpT~~~L~-DG----------------~vlIvGG~~--------~~t~E~~P~~~~~~~~~~~~~l~~~~~~~ 167 (243)
T PF07250_consen 113 DMQSGRWYPTATTLP-DG----------------RVLIVGGSN--------NPTYEFWPPKGPGPGPVTLPFLSQTSDTL 167 (243)
T ss_pred cccCCCccccceECC-CC----------------CEEEEeCcC--------CCcccccCCccCCCCceeeecchhhhccC
Confidence 599999998877776 34 899999964 223343333211 111110 11
Q ss_pred CCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcE-EEccCCCCC
Q 035526 353 NRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKW-MEIQRLPVD 412 (557)
Q Consensus 353 ~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W-~~v~~lp~~ 412 (557)
+.--|..+.+.. +|+||+++.. ...+||+.++++ +.++.+|..
T Consensus 168 ~~nlYP~~~llP---------dG~lFi~an~--------~s~i~d~~~n~v~~~lP~lPg~ 211 (243)
T PF07250_consen 168 PNNLYPFVHLLP---------DGNLFIFANR--------GSIIYDYKTNTVVRTLPDLPGG 211 (243)
T ss_pred ccccCceEEEcC---------CCCEEEEEcC--------CcEEEeCCCCeEEeeCCCCCCC
Confidence 233344444332 2599999974 467899999987 778888764
No 51
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=97.08 E-value=0.00022 Score=51.69 Aligned_cols=40 Identities=25% Similarity=0.502 Sum_probs=34.2
Q ss_pred CCCCCHHHHHHHHhcCCccchhhhhhcccccccccCChhh
Q 035526 140 HIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRF 179 (557)
Q Consensus 140 ~~~lp~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~~ 179 (557)
+..||+|++..|+..||..++.++..|||+|+.++..+.+
T Consensus 1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~~~l 40 (47)
T PF12937_consen 1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIANDNSL 40 (47)
T ss_dssp CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTCCCH
T ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCChhh
Confidence 3579999999999999999999999999999999977643
No 52
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.87 E-value=0.14 Score=53.63 Aligned_cols=37 Identities=27% Similarity=0.451 Sum_probs=33.1
Q ss_pred CCCCCHHHHHHHHhcCC-ccchhhhhhcccccccccCC
Q 035526 140 HIFLPDDTLEMCLVRFP-LTSLMNARLVCKKWRYLTTT 176 (557)
Q Consensus 140 ~~~lp~dl~~~il~rLP-~~sl~~~~~vck~W~~l~~s 176 (557)
|..||+||++.|..||| ..++.+++.||+.|++.+..
T Consensus 4 Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 4 WSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred hhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhccc
Confidence 67899999999999995 77999999999999987653
No 53
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=96.60 E-value=0.00079 Score=46.76 Aligned_cols=38 Identities=37% Similarity=0.708 Sum_probs=34.8
Q ss_pred CCHHHHHHHHhcCCccchhhhhhcccccccccCChhhh
Q 035526 143 LPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFL 180 (557)
Q Consensus 143 lp~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~~~ 180 (557)
+|+|++..|+.+|+..++.++..+||+|+.++..+.+.
T Consensus 1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~~~~~~ 38 (41)
T smart00256 1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLIDSHDFW 38 (41)
T ss_pred CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcChhhh
Confidence 69999999999999999999999999999999877543
No 54
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=96.55 E-value=1.4 Score=46.88 Aligned_cols=259 Identities=13% Similarity=0.068 Sum_probs=130.6
Q ss_pred CCCeEEEEeeecCCcccceEEEeeCCCCc--eEEccCCCc-------CcceeeEEEEECCEEEEEcccCCCCCCccccCC
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALDVSQDQ--WHRIDASIL-------KGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGS 259 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~~~--W~~l~~~p~-------~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~ 259 (557)
.++.+|+.... ..+++||..+++ |+.-..-.. +.+...+.++.++.||+.+. +
T Consensus 68 ~~~~vy~~~~~------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~-~----------- 129 (394)
T PRK11138 68 AYNKVYAADRA------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE-K----------- 129 (394)
T ss_pred ECCEEEEECCC------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC-C-----------
Confidence 47778876542 368999988765 865222100 11222345677889997542 1
Q ss_pred cccccceEEEEecCCC--cEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCccccee
Q 035526 260 SFKTHKRVLVFSPLTK--SWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRR 337 (557)
Q Consensus 260 ~~~~~~~v~~ydp~t~--~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~ 337 (557)
..++.+|+.|. .|+.-.+- .....+ .+.+ + .+|+..+. ..+.
T Consensus 130 -----g~l~ald~~tG~~~W~~~~~~-~~~ssP--~v~~--~----------------~v~v~~~~----------g~l~ 173 (394)
T PRK11138 130 -----GQVYALNAEDGEVAWQTKVAG-EALSRP--VVSD--G----------------LVLVHTSN----------GMLQ 173 (394)
T ss_pred -----CEEEEEECCCCCCcccccCCC-ceecCC--EEEC--C----------------EEEEECCC----------CEEE
Confidence 26899999877 58653221 111111 1111 2 44543332 2345
Q ss_pred eccccCCc--ccccCCCC----CCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCC--cEEEccCC
Q 035526 338 QYRNSFDG--FEGSLLPN----RKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRL 409 (557)
Q Consensus 338 ~yd~~~~~--W~~~~~~~----r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~--~W~~v~~l 409 (557)
.+|+.+.+ |+.+...+ +...+-++.++ .+|+..+. ..+..+|+.++ .|+.-...
T Consensus 174 ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~-----------~v~~~~~~-------g~v~a~d~~~G~~~W~~~~~~ 235 (394)
T PRK11138 174 ALNESDGAVKWTVNLDVPSLTLRGESAPATAFG-----------GAIVGGDN-------GRVSAVLMEQGQLIWQQRISQ 235 (394)
T ss_pred EEEccCCCEeeeecCCCCcccccCCCCCEEECC-----------EEEEEcCC-------CEEEEEEccCChhhheecccc
Confidence 57776554 55432211 11112223332 66664431 35777888776 48753222
Q ss_pred CCCC-------cCceEEEEECCEEEEEecCCeEEEEECCCCc--EEeccCCCCCCcccccCCEEEEEcC-CC----ccC-
Q 035526 410 PVDF-------GVVSSGVVCNGIFYVYSETEKLAGYYIERGF--WIGIQTSPFPPCVIEYYPKLVSWAR-SH----VPQ- 474 (557)
Q Consensus 410 p~~~-------~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~--W~~i~~~p~p~~~~~~~~~lv~~~g-G~----~~~- 474 (557)
|... .....-++.++.+|+.+....+.++|+.+++ |+.-. ..+......++.+++... |. ..+
T Consensus 236 ~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~--~~~~~~~~~~~~vy~~~~~g~l~ald~~t 313 (394)
T PRK11138 236 PTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREY--GSVNDFAVDGGRIYLVDQNDRVYALDTRG 313 (394)
T ss_pred CCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecC--CCccCcEEECCEEEEEcCCCeEEEEECCC
Confidence 2110 0112235679999998877799999998765 87632 112222223455555432 22 122
Q ss_pred -cCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEEEecCCCCCCcee
Q 035526 475 -LECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKWMNWSH 532 (557)
Q Consensus 475 -~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~~~W~~ 532 (557)
...|+.-. +.. . .-.+.++.++.||+... -..+.+++..+.+-.|+.
T Consensus 314 G~~~W~~~~-~~~-~--~~~sp~v~~g~l~v~~~-------~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 314 GVELWSQSD-LLH-R--LLTAPVLYNGYLVVGDS-------EGYLHWINREDGRFVAQQ 361 (394)
T ss_pred CcEEEcccc-cCC-C--cccCCEEECCEEEEEeC-------CCEEEEEECCCCCEEEEE
Confidence 35686421 111 1 11223457888884321 124555644454455654
No 55
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=96.43 E-value=0.092 Score=54.96 Aligned_cols=54 Identities=15% Similarity=0.170 Sum_probs=36.4
Q ss_pred CcEEEccCCCCCCcC------ceEEEEE-CCEEEEEecCC--eEEEEECCCCcEEeccCCCCC
Q 035526 401 NKWMEIQRLPVDFGV------VSSGVVC-NGIFYVYSETE--KLAGYYIERGFWIGIQTSPFP 454 (557)
Q Consensus 401 ~~W~~v~~lp~~~~~------~~~~vv~-~g~lYv~GG~~--~i~~YD~~~~~W~~i~~~p~p 454 (557)
-.|+.+++.|..... ..+-+++ +..|+|.-... ..++||+++.+|+.+.....|
T Consensus 158 w~W~~LP~PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~~GTysfDt~~~~W~~~GdW~LP 220 (342)
T PF07893_consen 158 WSWRSLPPPPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRRWGTYSFDTESHEWRKHGDWMLP 220 (342)
T ss_pred ceEEcCCCCCccccCCcccceEEEEEEecCCeEEEEecCCceEEEEEEcCCcceeeccceecC
Confidence 368888765544332 3444666 77788844332 689999999999999874333
No 56
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=96.41 E-value=0.0012 Score=47.76 Aligned_cols=40 Identities=35% Similarity=0.590 Sum_probs=33.7
Q ss_pred CCCCHHHHHHHHhcCCccchhhhhhcccccccccCChhhh
Q 035526 141 IFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRFL 180 (557)
Q Consensus 141 ~~lp~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~~~ 180 (557)
..||+|++.+|+.+|+..++.+++.+||+|+.++..+.+.
T Consensus 4 ~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~~~~~~ 43 (48)
T PF00646_consen 4 SDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVDSPRLW 43 (48)
T ss_dssp HHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHTTHHHH
T ss_pred HHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHcCCCcc
Confidence 3589999999999999999999999999999999887654
No 57
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=95.79 E-value=0.29 Score=48.74 Aligned_cols=42 Identities=10% Similarity=-0.013 Sum_probs=27.5
Q ss_pred CceEEEEeCCCCcEEE--ccCCCCCCcCceEEEEECCEEEEEecC
Q 035526 390 LDSGEIYDSVSNKWME--IQRLPVDFGVVSSGVVCNGIFYVYSET 432 (557)
Q Consensus 390 l~~ve~YD~~t~~W~~--v~~lp~~~~~~~~~vv~~g~lYv~GG~ 432 (557)
...|+..|++-+..+. ++.+......|- +..-++.+|++||.
T Consensus 130 ~P~VfLiDleFGC~tah~lpEl~dG~SFHv-slar~D~VYilGGH 173 (337)
T PF03089_consen 130 PPQVFLIDLEFGCCTAHTLPELQDGQSFHV-SLARNDCVYILGGH 173 (337)
T ss_pred CCeEEEEeccccccccccchhhcCCeEEEE-EEecCceEEEEccE
Confidence 3456666776666554 344555555544 46679999999996
No 58
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.62 E-value=1 Score=47.10 Aligned_cols=54 Identities=13% Similarity=0.053 Sum_probs=39.0
Q ss_pred CCCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCC
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSS 249 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~ 249 (557)
.+.+|+.++.. .....||+.+..-..+|.++.+.... .++.++++||++.....
T Consensus 75 ~gskIv~~d~~------~~t~vyDt~t~av~~~P~l~~pk~~p-isv~VG~~LY~m~~~~~ 128 (342)
T PF07893_consen 75 HGSKIVAVDQS------GRTLVYDTDTRAVATGPRLHSPKRCP-ISVSVGDKLYAMDRSPF 128 (342)
T ss_pred cCCeEEEEcCC------CCeEEEECCCCeEeccCCCCCCCcce-EEEEeCCeEEEeeccCc
Confidence 36667776543 34789999999998888887654444 45556888999987643
No 59
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=94.72 E-value=4.3 Score=39.18 Aligned_cols=63 Identities=17% Similarity=0.197 Sum_probs=41.6
Q ss_pred CCCeEEEEeeecCCcccceEEEeeCCCCc--eEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccce
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALDVSQDQ--WHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKR 266 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~~~--W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~ 266 (557)
.++.+|+..+ ...++++|..+++ |..-.+ . +.....+..++.||+..+ .+.
T Consensus 35 ~~~~v~~~~~------~~~l~~~d~~tG~~~W~~~~~--~--~~~~~~~~~~~~v~v~~~-----------------~~~ 87 (238)
T PF13360_consen 35 DGGRVYVASG------DGNLYALDAKTGKVLWRFDLP--G--PISGAPVVDGGRVYVGTS-----------------DGS 87 (238)
T ss_dssp ETTEEEEEET------TSEEEEEETTTSEEEEEEECS--S--CGGSGEEEETTEEEEEET-----------------TSE
T ss_pred eCCEEEEEcC------CCEEEEEECCCCCEEEEeecc--c--cccceeeecccccccccc-----------------eee
Confidence 4677777632 4579999998876 655332 1 111224677899998863 127
Q ss_pred EEEEecCCC--cEE
Q 035526 267 VLVFSPLTK--SWW 278 (557)
Q Consensus 267 v~~ydp~t~--~W~ 278 (557)
++.+|..+. .|+
T Consensus 88 l~~~d~~tG~~~W~ 101 (238)
T PF13360_consen 88 LYALDAKTGKVLWS 101 (238)
T ss_dssp EEEEETTTSCEEEE
T ss_pred eEecccCCcceeee
Confidence 999998877 587
No 60
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=94.18 E-value=9.1 Score=40.64 Aligned_cols=65 Identities=12% Similarity=0.174 Sum_probs=42.8
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCc--EEEccCCCCC-CcCceEEEEECCEEEEEecCCeEEEEECCCCc--EEe
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQRLPVD-FGVVSSGVVCNGIFYVYSETEKLAGYYIERGF--WIG 447 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~--W~~v~~lp~~-~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~--W~~ 447 (557)
++|+..+ -..+..+|+++++ |+.-...|.. .....+-++.++.+|+..+...+.++|+++++ |+.
T Consensus 162 ~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v~~~~v~~~~~~g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 162 LVLVHTS-------NGMLQALNESDGAVKWTVNLDVPSLTLRGESAPATAFGGAIVGGDNGRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred EEEEECC-------CCEEEEEEccCCCEeeeecCCCCcccccCCCCCEEECCEEEEEcCCCEEEEEEccCChhhhee
Confidence 7776443 2368999998875 8875443321 11112235668889988877889999998765 764
No 61
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=94.01 E-value=9.3 Score=40.13 Aligned_cols=59 Identities=17% Similarity=0.182 Sum_probs=40.5
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCC--cEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCC--cEEe
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERG--FWIG 447 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~--~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~--~W~~ 447 (557)
.||+.... ..+.+||++++ .|+.-. +. ....++.++.||+......+.++|+.++ .|+.
T Consensus 243 ~vy~~~~~-------g~l~a~d~~tG~~~W~~~~--~~----~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~ 305 (377)
T TIGR03300 243 QVYAVSYQ-------GRVAALDLRSGRVLWKRDA--SS----YQGPAVDDNRLYVTDADGVVVALDRRSGSELWKN 305 (377)
T ss_pred EEEEEEcC-------CEEEEEECCCCcEEEeecc--CC----ccCceEeCCEEEEECCCCeEEEEECCCCcEEEcc
Confidence 77775531 35888998876 487531 11 1223567999999887779999999876 4865
No 62
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=93.92 E-value=9.6 Score=40.00 Aligned_cols=56 Identities=23% Similarity=0.271 Sum_probs=36.4
Q ss_pred eEEEEeCCCC--cEEEccCCCCCCc-------CceEEEEECCEEEEEecCCeEEEEECCCCc--EEe
Q 035526 392 SGEIYDSVSN--KWMEIQRLPVDFG-------VVSSGVVCNGIFYVYSETEKLAGYYIERGF--WIG 447 (557)
Q Consensus 392 ~ve~YD~~t~--~W~~v~~lp~~~~-------~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~--W~~ 447 (557)
.+..+|+.++ .|+.-...+.... .....++.++.+|+.+....+.+||+++++ |..
T Consensus 201 ~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~ 267 (377)
T TIGR03300 201 KLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKR 267 (377)
T ss_pred EEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEee
Confidence 5888898776 5875322221110 112235679999998877899999998764 765
No 63
>PRK13684 Ycf48-like protein; Provisional
Probab=93.49 E-value=11 Score=39.25 Aligned_cols=109 Identities=13% Similarity=0.151 Sum_probs=56.7
Q ss_pred eCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEE--ECCCCcEEeccCCCCC-C--ccc----ccCCEEEEE
Q 035526 397 DSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGY--YIERGFWIGIQTSPFP-P--CVI----EYYPKLVSW 467 (557)
Q Consensus 397 D~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~Y--D~~~~~W~~i~~~p~p-~--~~~----~~~~~lv~~ 467 (557)
|....+|+.+.. +........+..-++.++++|....+ .+ +-.-.+|+.+.. |.. . .+. .-.+.+++.
T Consensus 200 ~~gg~tW~~~~~-~~~~~l~~i~~~~~g~~~~vg~~G~~-~~~s~d~G~sW~~~~~-~~~~~~~~l~~v~~~~~~~~~~~ 276 (334)
T PRK13684 200 EPGQTAWTPHQR-NSSRRLQSMGFQPDGNLWMLARGGQI-RFNDPDDLESWSKPII-PEITNGYGYLDLAYRTPGEIWAG 276 (334)
T ss_pred CCCCCeEEEeeC-CCcccceeeeEcCCCCEEEEecCCEE-EEccCCCCCccccccC-CccccccceeeEEEcCCCCEEEE
Confidence 445567998854 33333333334457889998866443 44 223458997643 311 1 111 113345554
Q ss_pred cC-CCcc----CcCcEEEcccCCCCCCCCCceEEeeCCEEEEEcee
Q 035526 468 AR-SHVP----QLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMF 508 (557)
Q Consensus 468 ~g-G~~~----~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~ 508 (557)
+. |.+. ...+|+.+...+..+......+...++++|++|..
T Consensus 277 G~~G~v~~S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~ 322 (334)
T PRK13684 277 GGNGTLLVSKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFVLGQR 322 (334)
T ss_pred cCCCeEEEeCCCCCCCeECCcCCCCCcceEEEEEeCCCceEEECCC
Confidence 33 3221 26799998532222222333444678888887763
No 64
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=93.33 E-value=3.1 Score=42.27 Aligned_cols=107 Identities=12% Similarity=0.082 Sum_probs=65.0
Q ss_pred cccceeeccccCCcccccCCCCC-CCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccC--
Q 035526 332 RLSLRRQYRNSFDGFEGSLLPNR-KSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR-- 408 (557)
Q Consensus 332 ~l~~v~~yd~~~~~W~~~~~~~r-~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~-- 408 (557)
..+.+-.||+...+|..+-.--. .-..+...++ .+||+.|-+.-.......+-.||..+.+|+.+..
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~i~G~V~~l~~~~~----------~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~ 83 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNGISGTVTDLQWASN----------NQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGS 83 (281)
T ss_pred CCCEEEEEECCCCEeecCCCCceEEEEEEEEecC----------CEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcc
Confidence 46667789999999998333211 1122222322 2888888664333245678999999999998865
Q ss_pred ---CCCCCcCceEEEEECCEEEEEec----CCeEEEEECCCCcEEeccC
Q 035526 409 ---LPVDFGVVSSGVVCNGIFYVYSE----TEKLAGYYIERGFWIGIQT 450 (557)
Q Consensus 409 ---lp~~~~~~~~~vv~~g~lYv~GG----~~~i~~YD~~~~~W~~i~~ 450 (557)
+|.+.........-...+++.|. ...+..|| -.+|..+..
T Consensus 84 s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~d--Gs~W~~i~~ 130 (281)
T PF12768_consen 84 SNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYD--GSSWSSIGS 130 (281)
T ss_pred cccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEc--CCceEeccc
Confidence 23332211111112345776664 24788885 678999887
No 65
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=92.93 E-value=1.5 Score=44.52 Aligned_cols=71 Identities=20% Similarity=0.240 Sum_probs=48.0
Q ss_pred EEEcccCCCCC-CCceEEEEeCCCCcEEEccCCCCCCcCceEEEE-ECCEEEEEecC-------CeEEEEECCCCcEEec
Q 035526 378 IAVGGLGSWDE-PLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVV-CNGIFYVYSET-------EKLAGYYIERGFWIGI 448 (557)
Q Consensus 378 yviGG~~~~~~-~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv-~~g~lYv~GG~-------~~i~~YD~~~~~W~~i 448 (557)
||-|-+..... ....+-.||+.+.+|..+..--. ........ -+++||+.|-. ..+..||.++.+|+.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~i~--G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~ 79 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNGIS--GTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSL 79 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCCce--EEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeec
Confidence 44444444332 46789999999999999865311 11122232 37888888742 3799999999999988
Q ss_pred cC
Q 035526 449 QT 450 (557)
Q Consensus 449 ~~ 450 (557)
..
T Consensus 80 ~~ 81 (281)
T PF12768_consen 80 GG 81 (281)
T ss_pred CC
Confidence 76
No 66
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=92.89 E-value=10 Score=37.35 Aligned_cols=64 Identities=14% Similarity=0.053 Sum_probs=35.4
Q ss_pred eEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEE-EC-CEEEEEcccCCCCCCccccCCcccccceEEE
Q 035526 192 WLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVS-IM-DDVYVVGGCSSLTSFGRVDGSSFKTHKRVLV 269 (557)
Q Consensus 192 ~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~-~~-~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ 269 (557)
.+|+.++.+ ..+..||+.+++-...-......+ +++. -+ ..+|+.++.. +.+.+
T Consensus 2 ~~~~s~~~d-----~~v~~~d~~t~~~~~~~~~~~~~~---~l~~~~dg~~l~~~~~~~----------------~~v~~ 57 (300)
T TIGR03866 2 KAYVSNEKD-----NTISVIDTATLEVTRTFPVGQRPR---GITLSKDGKLLYVCASDS----------------DTIQV 57 (300)
T ss_pred cEEEEecCC-----CEEEEEECCCCceEEEEECCCCCC---ceEECCCCCEEEEEECCC----------------CeEEE
Confidence 356665532 368889988776433222111111 2332 23 3577776522 36889
Q ss_pred EecCCCcEEE
Q 035526 270 FSPLTKSWWK 279 (557)
Q Consensus 270 ydp~t~~W~~ 279 (557)
||+.+.+...
T Consensus 58 ~d~~~~~~~~ 67 (300)
T TIGR03866 58 IDLATGEVIG 67 (300)
T ss_pred EECCCCcEEE
Confidence 9998877654
No 67
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=90.32 E-value=19 Score=35.22 Aligned_cols=196 Identities=11% Similarity=-0.008 Sum_probs=101.5
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEE--CCEEEEEcccCCCCCCccccCCcccccceE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSI--MDDVYVVGGCSSLTSFGRVDGSSFKTHKRV 267 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~--~~~IYViGG~~~~~~~~~~~~~~~~~~~~v 267 (557)
++.||+..-. ...++.+|+.++.-..+.... ..+++.. ++.+|+... ...
T Consensus 11 ~g~l~~~D~~-----~~~i~~~~~~~~~~~~~~~~~-----~~G~~~~~~~g~l~v~~~------------------~~~ 62 (246)
T PF08450_consen 11 DGRLYWVDIP-----GGRIYRVDPDTGEVEVIDLPG-----PNGMAFDRPDGRLYVADS------------------GGI 62 (246)
T ss_dssp TTEEEEEETT-----TTEEEEEETTTTEEEEEESSS-----EEEEEEECTTSEEEEEET------------------TCE
T ss_pred CCEEEEEEcC-----CCEEEEEECCCCeEEEEecCC-----CceEEEEccCCEEEEEEc------------------Cce
Confidence 4567766422 357999999998765543322 2344444 688888764 235
Q ss_pred EEEecCCCcEEEcccCCc---CcccceEEEEecCCCcccccccCCCCCCCCcEEEEc-ccccccCCCCcc--cceeeccc
Q 035526 268 LVFSPLTKSWWKVASMRY---ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLG-GVSDVYEDPHRL--SLRRQYRN 341 (557)
Q Consensus 268 ~~ydp~t~~W~~l~~m~~---~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~G-G~~~~y~~~~~l--~~v~~yd~ 341 (557)
.++|+.+++++.+...+. +...+.-.++.-+| .+|+-- +.. ..... ..+.++++
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G----------------~ly~t~~~~~----~~~~~~~g~v~~~~~ 122 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG----------------NLYVTDSGGG----GASGIDPGSVYRIDP 122 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-----------------EEEEEECCB----CTTCGGSEEEEEEET
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC----------------CEEEEecCCC----ccccccccceEEECC
Confidence 666999999998876632 23333345555445 555532 111 11111 44556666
Q ss_pred cCCcccccCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCc--EEE---ccCCCCCCcCc
Q 035526 342 SFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNK--WME---IQRLPVDFGVV 416 (557)
Q Consensus 342 ~~~~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~--W~~---v~~lp~~~~~~ 416 (557)
. .+.+.....-...-+++.-.+ ...||+.-- ....++.|++.... +.. +..++......
T Consensus 123 ~-~~~~~~~~~~~~pNGi~~s~d---------g~~lyv~ds------~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~p 186 (246)
T PF08450_consen 123 D-GKVTVVADGLGFPNGIAFSPD---------GKTLYVADS------FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYP 186 (246)
T ss_dssp T-SEEEEEEEEESSEEEEEEETT---------SSEEEEEET------TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEE
T ss_pred C-CeEEEEecCcccccceEECCc---------chheeeccc------ccceeEEEeccccccceeeeeeEEEcCCCCcCC
Confidence 6 333221111111223332221 115666443 33568999886433 432 22333332111
Q ss_pred -eEEEEECCEEEEEe-cCCeEEEEECCCCcEEecc
Q 035526 417 -SSGVVCNGIFYVYS-ETEKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 417 -~~~vv~~g~lYv~G-G~~~i~~YD~~~~~W~~i~ 449 (557)
..++--+|.|||.. +.+.|.+||++-..-..+.
T Consensus 187 DG~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~ 221 (246)
T PF08450_consen 187 DGLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIE 221 (246)
T ss_dssp EEEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE
T ss_pred CcceEcCCCCEEEEEcCCCEEEEECCCccEEEEEc
Confidence 22233478999975 3469999999955554444
No 68
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=90.13 E-value=18 Score=34.71 Aligned_cols=57 Identities=23% Similarity=0.215 Sum_probs=36.0
Q ss_pred eEEEEeCCCC--cEE-EccCCCCC-CcCceEEEEECCEEEEEecCCeEEEEECCCCc--EEec
Q 035526 392 SGEIYDSVSN--KWM-EIQRLPVD-FGVVSSGVVCNGIFYVYSETEKLAGYYIERGF--WIGI 448 (557)
Q Consensus 392 ~ve~YD~~t~--~W~-~v~~lp~~-~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~--W~~i 448 (557)
.+..+|..+. .|+ .....+.. .......++.++.+|+......+.++|+++++ |..-
T Consensus 87 ~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 87 SLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred eeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 6777886665 598 44332222 22223345568888888877799999998765 6663
No 69
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=90.10 E-value=4.1 Score=40.83 Aligned_cols=75 Identities=15% Similarity=0.059 Sum_probs=46.6
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCc--------EE---EccCCCCCCcCceEEEEE-CC--EEEEEecCCeEEEEECC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNK--------WM---EIQRLPVDFGVVSSGVVC-NG--IFYVYSETEKLAGYYIE 441 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~--------W~---~v~~lp~~~~~~~~~vv~-~g--~lYv~GG~~~i~~YD~~ 441 (557)
..++.||.....+...++++....+.. .+ .+..+|.+|++|...++. .| ...+|||..-+-.=.-.
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 455668887776666677766544322 22 236689999998876553 33 35667887444333445
Q ss_pred CCcEEeccC
Q 035526 442 RGFWIGIQT 450 (557)
Q Consensus 442 ~~~W~~i~~ 450 (557)
|..|..+-.
T Consensus 120 TenWNsVvD 128 (337)
T PF03089_consen 120 TENWNSVVD 128 (337)
T ss_pred hhhcceecc
Confidence 777877665
No 70
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=89.73 E-value=26 Score=35.90 Aligned_cols=141 Identities=11% Similarity=0.067 Sum_probs=66.9
Q ss_pred ceEEEEeCCCCc-EEEcc----CCCCCCcCceEEEEE-C-CEEEEEec-CCeEEEEECC--CCcEEeccC---CCC----
Q 035526 391 DSGEIYDSVSNK-WMEIQ----RLPVDFGVVSSGVVC-N-GIFYVYSE-TEKLAGYYIE--RGFWIGIQT---SPF---- 453 (557)
Q Consensus 391 ~~ve~YD~~t~~-W~~v~----~lp~~~~~~~~~vv~-~-g~lYv~GG-~~~i~~YD~~--~~~W~~i~~---~p~---- 453 (557)
+.+.+||..++. -.... ..+....-.. .++. + ..+|+... .+.+..||++ +++.+.+.. +|.
T Consensus 148 ~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~-~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~ 226 (330)
T PRK11028 148 DRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRH-MVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSD 226 (330)
T ss_pred CEEEEEEECCCCcccccCCCceecCCCCCCce-EEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCC
Confidence 579999987632 22110 1122211112 2332 3 46888865 5788888886 445544332 221
Q ss_pred CCc-----ccccCCEEEEEcCCC--------ccCcCcEEEcccCCCCCCCCCceEEeeCCEEEEEceeeEeceEeeeEEE
Q 035526 454 PPC-----VIEYYPKLVSWARSH--------VPQLECWTKVSVHPDAPMDWSAAFVADRNHIFGVEMFKIFGQVLDFLTV 520 (557)
Q Consensus 454 p~~-----~~~~~~~lv~~~gG~--------~~~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvgG~~~~g~~~~~v~v 520 (557)
++. ++.-+..+++-+.+. ..+...++.+...+......+..+-..+..||+... .-+.+.+
T Consensus 227 ~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~------~~~~v~v 300 (330)
T PRK11028 227 TRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQ------KSHHISV 300 (330)
T ss_pred CccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEc------cCCcEEE
Confidence 110 001122344432211 012334444444443222234444456777775432 2357888
Q ss_pred EecCCCCCCceecccCCc
Q 035526 521 CDVSEKWMNWSHISRNHM 538 (557)
Q Consensus 521 y~~~d~~~~W~~i~~~~~ 538 (557)
|++.+....++.+.....
T Consensus 301 ~~~~~~~g~l~~~~~~~~ 318 (330)
T PRK11028 301 YEIDGETGLLTELGRYAV 318 (330)
T ss_pred EEEcCCCCcEEEcccccc
Confidence 866544456777766554
No 71
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=88.74 E-value=2.6 Score=37.21 Aligned_cols=80 Identities=16% Similarity=0.273 Sum_probs=51.3
Q ss_pred EEECCEEEEEecC-----CeEEEEECCCCcEEeccCCCCCCcccccCCEEEEEcCCCccCcCcEEEcccCCCCCCCCCce
Q 035526 420 VVCNGIFYVYSET-----EKLAGYYIERGFWIGIQTSPFPPCVIEYYPKLVSWARSHVPQLECWTKVSVHPDAPMDWSAA 494 (557)
Q Consensus 420 vv~~g~lYv~GG~-----~~i~~YD~~~~~W~~i~~~p~p~~~~~~~~~lv~~~gG~~~~~~~W~~v~~~p~~~~~~~~~ 494 (557)
+.+||.+|..... ..|.+||.++++|+.+.. |.... .......
T Consensus 2 icinGvly~~a~~~~~~~~~IvsFDv~~E~f~~i~~-P~~~~-------------------------------~~~~~~~ 49 (129)
T PF08268_consen 2 ICINGVLYWLAWSEDSDNNVIVSFDVRSEKFRFIKL-PEDPY-------------------------------SSDCSST 49 (129)
T ss_pred EEECcEEEeEEEECCCCCcEEEEEEcCCceEEEEEe-eeeec-------------------------------cccCccE
Confidence 4579999998764 599999999999998876 21110 0112334
Q ss_pred EEeeCCEEEEEceeeEeceEeeeEEEEecCCCC-CCceec
Q 035526 495 FVADRNHIFGVEMFKIFGQVLDFLTVCDVSEKW-MNWSHI 533 (557)
Q Consensus 495 ~~~~~~~iyvvgG~~~~g~~~~~v~vy~~~d~~-~~W~~i 533 (557)
++..+|+|-++.-.. .+. ...+.+|-+.|-+ ..|.+.
T Consensus 50 L~~~~G~L~~v~~~~-~~~-~~~~~iWvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 50 LIEYKGKLALVSYND-QGE-PDSIDIWVLEDYEKQEWSKK 87 (129)
T ss_pred EEEeCCeEEEEEecC-CCC-cceEEEEEeeccccceEEEE
Confidence 556666666544333 111 3457788777777 889765
No 72
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=87.08 E-value=9.2 Score=40.88 Aligned_cols=62 Identities=13% Similarity=0.135 Sum_probs=39.2
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCCc
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGF 444 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~ 444 (557)
.|++.||+++ .|-.||..+.. ..+..+..+...-...+.-+|.+++..|.+.+-+.|+.++.
T Consensus 167 hivvtGsYDg------~vrl~DtR~~~-~~v~elnhg~pVe~vl~lpsgs~iasAgGn~vkVWDl~~G~ 228 (487)
T KOG0310|consen 167 HIVVTGSYDG------KVRLWDTRSLT-SRVVELNHGCPVESVLALPSGSLIASAGGNSVKVWDLTTGG 228 (487)
T ss_pred eEEEecCCCc------eEEEEEeccCC-ceeEEecCCCceeeEEEcCCCCEEEEcCCCeEEEEEecCCc
Confidence 7999999876 47888887773 33333333322222234445577777777789888887543
No 73
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=86.38 E-value=47 Score=34.92 Aligned_cols=88 Identities=13% Similarity=-0.092 Sum_probs=50.5
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLV 269 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ 269 (557)
..++||.-..... ..+.+..+|..+.+-.. ..+...|-.+.+.--+..|||.-.+......+ +..+.+.+
T Consensus 12 ~~~v~V~d~~~~~-~~~~v~ViD~~~~~v~g--~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G-------~~~d~V~v 81 (352)
T TIGR02658 12 ARRVYVLDPGHFA-ATTQVYTIDGEAGRVLG--MTDGGFLPNPVVASDGSFFAHASTVYSRIARG-------KRTDYVEV 81 (352)
T ss_pred CCEEEEECCcccc-cCceEEEEECCCCEEEE--EEEccCCCceeECCCCCEEEEEeccccccccC-------CCCCEEEE
Confidence 5568887653211 13789999988865432 22221122223333456899998754433222 34578999
Q ss_pred EecCCCcEEE-cccCCcCc
Q 035526 270 FSPLTKSWWK-VASMRYAR 287 (557)
Q Consensus 270 ydp~t~~W~~-l~~m~~~R 287 (557)
||+.|.+=.. ++-.+.||
T Consensus 82 ~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 82 IDPQTHLPIADIELPEGPR 100 (352)
T ss_pred EECccCcEEeEEccCCCch
Confidence 9999987653 43334444
No 74
>PRK13684 Ycf48-like protein; Provisional
Probab=84.96 E-value=52 Score=34.20 Aligned_cols=170 Identities=11% Similarity=0.141 Sum_probs=87.2
Q ss_pred eEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEE-EecCCCcEEEcccCCc
Q 035526 207 EIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLV-FSPLTKSWWKVASMRY 285 (557)
Q Consensus 207 ~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~-ydp~t~~W~~l~~m~~ 285 (557)
.++.=+-.-.+|+.+.... . -..+.+....+..|++.|..+ .++. .|....+|..++. +.
T Consensus 153 ~i~~S~DgG~tW~~~~~~~-~-g~~~~i~~~~~g~~v~~g~~G----------------~i~~s~~~gg~tW~~~~~-~~ 213 (334)
T PRK13684 153 AIYRTTDGGKNWEALVEDA-A-GVVRNLRRSPDGKYVAVSSRG----------------NFYSTWEPGQTAWTPHQR-NS 213 (334)
T ss_pred eEEEECCCCCCceeCcCCC-c-ceEEEEEECCCCeEEEEeCCc----------------eEEEEcCCCCCeEEEeeC-CC
Confidence 3555555667899887643 2 244566665555666655443 2332 2445568988754 22
Q ss_pred CcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeec--cccCCcccc-cCCCCCCC---ceE
Q 035526 286 ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQY--RNSFDGFEG-SLLPNRKS---YKF 359 (557)
Q Consensus 286 ~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~y--d~~~~~W~~-~~~~~r~~---~~~ 359 (557)
.+.-..+... .++ .++++|....+ .+ +.....|+. ..|..... +.+
T Consensus 214 ~~~l~~i~~~-~~g----------------~~~~vg~~G~~-----------~~~s~d~G~sW~~~~~~~~~~~~~l~~v 265 (334)
T PRK13684 214 SRRLQSMGFQ-PDG----------------NLWMLARGGQI-----------RFNDPDDLESWSKPIIPEITNGYGYLDL 265 (334)
T ss_pred cccceeeeEc-CCC----------------CEEEEecCCEE-----------EEccCCCCCccccccCCccccccceeeE
Confidence 2222222221 122 56776642211 11 223457776 33322111 222
Q ss_pred EEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccC---CCCCCcCceEEEEECCEEEEEecCCeEE
Q 035526 360 IRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSETEKLA 436 (557)
Q Consensus 360 ~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~~~i~ 436 (557)
+.... +.+|++|..+. +..-...-.+|+.+.. +|. .........+++.|+.|....|.
T Consensus 266 ~~~~~----------~~~~~~G~~G~-------v~~S~d~G~tW~~~~~~~~~~~--~~~~~~~~~~~~~~~~G~~G~il 326 (334)
T PRK13684 266 AYRTP----------GEIWAGGGNGT-------LLVSKDGGKTWEKDPVGEEVPS--NFYKIVFLDPEKGFVLGQRGVLL 326 (334)
T ss_pred EEcCC----------CCEEEEcCCCe-------EEEeCCCCCCCeECCcCCCCCc--ceEEEEEeCCCceEEECCCceEE
Confidence 22221 37888876421 2222233458998753 332 22233344588899999888999
Q ss_pred EEECCC
Q 035526 437 GYYIER 442 (557)
Q Consensus 437 ~YD~~~ 442 (557)
.|+...
T Consensus 327 ~~~~~~ 332 (334)
T PRK13684 327 RYVGSA 332 (334)
T ss_pred EecCCC
Confidence 998754
No 75
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=84.46 E-value=55 Score=34.04 Aligned_cols=68 Identities=18% Similarity=0.183 Sum_probs=38.1
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCc--EEEccC--CCCCCcCceEEEEE--CCEEEEEecC-CeEEEEECC--CCcEE
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNK--WMEIQR--LPVDFGVVSSGVVC--NGIFYVYSET-EKLAGYYIE--RGFWI 446 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~--W~~v~~--lp~~~~~~~~~vv~--~g~lYv~GG~-~~i~~YD~~--~~~W~ 446 (557)
.+|+..- -.+.+.+|+...+. .+.... +|.... ....++. +..+||.... +.|.+|+.. ++.++
T Consensus 157 ~v~v~dl------G~D~v~~~~~~~~~~~l~~~~~~~~~~G~G-PRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~ 229 (345)
T PF10282_consen 157 FVYVPDL------GADRVYVYDIDDDTGKLTPVDSIKVPPGSG-PRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLT 229 (345)
T ss_dssp EEEEEET------TTTEEEEEEE-TTS-TEEEEEEEECSTTSS-EEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEE
T ss_pred EEEEEec------CCCEEEEEEEeCCCceEEEeeccccccCCC-CcEEEEcCCcCEEEEecCCCCcEEEEeecccCCcee
Confidence 5666542 23678888887765 655433 333222 1223333 3479999875 466666655 77777
Q ss_pred eccC
Q 035526 447 GIQT 450 (557)
Q Consensus 447 ~i~~ 450 (557)
.+..
T Consensus 230 ~~~~ 233 (345)
T PF10282_consen 230 EIQT 233 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 6554
No 76
>smart00284 OLF Olfactomedin-like domains.
Probab=83.67 E-value=50 Score=32.99 Aligned_cols=77 Identities=9% Similarity=-0.022 Sum_probs=45.2
Q ss_pred CCeEEEEeeecCCcccceEEEe----eCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccc
Q 035526 190 NPWLFLFGAVKDGYYSGEIHAL----DVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHK 265 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~y----d~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~ 265 (557)
++.++++.+.. ...+.+..| |....++.+.-.+|.+ -.+-+.++.+|.+|.--. .+.
T Consensus 34 ~~~~wv~~~~~--~~~~~v~ey~~~~~f~~~~~~~~~~Lp~~-~~GtG~VVYngslYY~~~----------------~s~ 94 (255)
T smart00284 34 KSLYWYMPLNT--RVLRSVREYSSMSDFQMGKNPTDHPLPHA-GQGTGVVVYNGSLYFNKF----------------NSH 94 (255)
T ss_pred CceEEEEcccc--CCCcEEEEecCHHHHhccCCceEEECCCc-cccccEEEECceEEEEec----------------CCc
Confidence 46788876542 112345555 2333444332234433 456677888999987543 235
Q ss_pred eEEEEecCCCcEEEcccCCc
Q 035526 266 RVLVFSPLTKSWWKVASMRY 285 (557)
Q Consensus 266 ~v~~ydp~t~~W~~l~~m~~ 285 (557)
.+.+||..+++=.....+|.
T Consensus 95 ~iiKydL~t~~v~~~~~Lp~ 114 (255)
T smart00284 95 DICRFDLTTETYQKEPLLNG 114 (255)
T ss_pred cEEEEECCCCcEEEEEecCc
Confidence 79999999997754444543
No 77
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=83.37 E-value=0.45 Score=48.02 Aligned_cols=39 Identities=23% Similarity=0.282 Sum_probs=35.4
Q ss_pred CCCCCHHHHHHHHhcCCccchhhhhhcccccccccCChh
Q 035526 140 HIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPR 178 (557)
Q Consensus 140 ~~~lp~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~ 178 (557)
|..+||++++.|++.||.++|.+...|||+|..+.....
T Consensus 98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~ 136 (419)
T KOG2120|consen 98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDES 136 (419)
T ss_pred cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhcccccc
Confidence 678999999999999999999999999999988876554
No 78
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=80.03 E-value=90 Score=33.43 Aligned_cols=125 Identities=9% Similarity=-0.028 Sum_probs=61.2
Q ss_pred eEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCCcE-----Eecc
Q 035526 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERGFW-----IGIQ 449 (557)
Q Consensus 375 ~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~W-----~~i~ 449 (557)
+.++++|-.+. -....|.....|+.+.. |............++.+++.|....+..-+-.-..| .+++
T Consensus 250 G~~~~vg~~G~------~~~s~d~G~~~W~~~~~-~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~~f~~~~ 322 (398)
T PLN00033 250 GDYVAVSSRGN------FYLTWEPGQPYWQPHNR-ASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDFDFEEAD 322 (398)
T ss_pred CCEEEEECCcc------EEEecCCCCcceEEecC-CCccceeeeeEcCCCCEEEEeCCceEEEecCCCCcccccceeecc
Confidence 35666664321 12223444445998864 333333233345688999988776666655555544 4443
Q ss_pred CCCCCCccc----ccCCEEEEEcC-CCcc----CcCcEEEcccCCCCCCCCCceEEeeCCEEEEEc
Q 035526 450 TSPFPPCVI----EYYPKLVSWAR-SHVP----QLECWTKVSVHPDAPMDWSAAFVADRNHIFGVE 506 (557)
Q Consensus 450 ~~p~p~~~~----~~~~~lv~~~g-G~~~----~~~~W~~v~~~p~~~~~~~~~~~~~~~~iyvvg 506 (557)
....+..+. .-.+.+++.+. |.+. ...+|+++..-+..+...-..+...+++.|++|
T Consensus 323 ~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G 388 (398)
T PLN00033 323 IKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLG 388 (398)
T ss_pred cCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEe
Confidence 211111111 11234555443 4322 378999975322111111123335668888766
No 79
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=79.19 E-value=33 Score=34.44 Aligned_cols=58 Identities=14% Similarity=0.018 Sum_probs=36.7
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIER 442 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~ 442 (557)
+||..-= ....+.+||+.+ .+.+..++.+..+.+. +.-+..||+..|++.+...||++
T Consensus 101 ~l~qLTW------k~~~~f~yd~~t--l~~~~~~~y~~EGWGL-t~dg~~Li~SDGS~~L~~~dP~~ 158 (264)
T PF05096_consen 101 KLYQLTW------KEGTGFVYDPNT--LKKIGTFPYPGEGWGL-TSDGKRLIMSDGSSRLYFLDPET 158 (264)
T ss_dssp EEEEEES------SSSEEEEEETTT--TEEEEEEE-SSS--EE-EECSSCEEEE-SSSEEEEE-TTT
T ss_pred EEEEEEe------cCCeEEEEcccc--ceEEEEEecCCcceEE-EcCCCEEEEECCccceEEECCcc
Confidence 6666542 235688899875 4556555555444443 56677888889999999999985
No 80
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.44 E-value=37 Score=36.51 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=36.7
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEE
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYY 439 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD 439 (557)
.-.+.||.++ .|-+|| +..|+.+..+..+-..-..++.-++.-.|+|..|.+..+-
T Consensus 251 ~rLlS~sLD~------~VKVfd--~t~~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~r 306 (487)
T KOG0310|consen 251 TRLLSGSLDR------HVKVFD--TTNYKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIR 306 (487)
T ss_pred ceEeeccccc------ceEEEE--ccceEEEEeeecccceeeEEecCCCceEEEecccceeeee
Confidence 3445566554 478898 5568877665554444445566788888889887666654
No 81
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=77.91 E-value=20 Score=38.28 Aligned_cols=61 Identities=7% Similarity=0.042 Sum_probs=35.4
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERG 443 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~ 443 (557)
.++++-|..+ .+......|+.|-.--.++......+. ..-+.+||+.||+..|+.+|+..+
T Consensus 316 ~fia~~G~~G------~I~lLhakT~eli~s~KieG~v~~~~f-sSdsk~l~~~~~~GeV~v~nl~~~ 376 (514)
T KOG2055|consen 316 NFIAIAGNNG------HIHLLHAKTKELITSFKIEGVVSDFTF-SSDSKELLASGGTGEVYVWNLRQN 376 (514)
T ss_pred CeEEEcccCc------eEEeehhhhhhhhheeeeccEEeeEEE-ecCCcEEEEEcCCceEEEEecCCc
Confidence 4556666433 355566666666433223322222111 223456888899999999999876
No 82
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=77.06 E-value=93 Score=31.97 Aligned_cols=250 Identities=14% Similarity=0.150 Sum_probs=103.1
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCc--ceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKG--RFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRV 267 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~--R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v 267 (557)
...-|++|.. ..++.=+---.+|..+......+ ....++...++..||+|... -+
T Consensus 27 ~~~G~~VG~~------g~il~T~DGG~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~g-----------------~l 83 (302)
T PF14870_consen 27 PNHGWAVGAY------GTILKTTDGGKTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEPG-----------------LL 83 (302)
T ss_dssp SS-EEEEETT------TEEEEESSTTSS-EE-----S-----EEEEEEEETTEEEEEEETT-----------------EE
T ss_pred CCEEEEEecC------CEEEEECCCCccccccccCCCccceeeEEEEEecCCceEEEcCCc-----------------eE
Confidence 4566677642 22333334456798875432211 22345666788999987521 23
Q ss_pred EEEecCCCcEEEcc-cCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcc
Q 035526 268 LVFSPLTKSWWKVA-SMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGF 346 (557)
Q Consensus 268 ~~ydp~t~~W~~l~-~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W 346 (557)
+.-.=.-.+|.+++ +.+.|-..+.+..+. .+ .+.++|....+| +-...-..|
T Consensus 84 l~T~DgG~tW~~v~l~~~lpgs~~~i~~l~-~~----------------~~~l~~~~G~iy----------~T~DgG~tW 136 (302)
T PF14870_consen 84 LHTTDGGKTWERVPLSSKLPGSPFGITALG-DG----------------SAELAGDRGAIY----------RTTDGGKTW 136 (302)
T ss_dssp EEESSTTSS-EE----TT-SS-EEEEEEEE-TT----------------EEEEEETT--EE----------EESSTTSSE
T ss_pred EEecCCCCCcEEeecCCCCCCCeeEEEEcC-CC----------------cEEEEcCCCcEE----------EeCCCCCCe
Confidence 44333567999986 223333322222222 11 344554433222 222234567
Q ss_pred cccCCCCCCCc-eEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCE
Q 035526 347 EGSLLPNRKSY-KFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGI 425 (557)
Q Consensus 347 ~~~~~~~r~~~-~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~ 425 (557)
+.......... .+.... .|++++++..+. -.-..|+....|+....... +.....+..-++.
T Consensus 137 ~~~~~~~~gs~~~~~r~~----------dG~~vavs~~G~------~~~s~~~G~~~w~~~~r~~~-~riq~~gf~~~~~ 199 (302)
T PF14870_consen 137 QAVVSETSGSINDITRSS----------DGRYVAVSSRGN------FYSSWDPGQTTWQPHNRNSS-RRIQSMGFSPDGN 199 (302)
T ss_dssp EEEE-S----EEEEEE-T----------TS-EEEEETTSS------EEEEE-TT-SS-EEEE--SS-S-EEEEEE-TTS-
T ss_pred eEcccCCcceeEeEEECC----------CCcEEEEECccc------EEEEecCCCccceEEccCcc-ceehhceecCCCC
Confidence 76222222222 222222 247777775432 23456888889998875433 3333445566888
Q ss_pred EEEEecCCeEEEEE--CCCCcEEeccCCCCCCccc-----cc--CCEEEEEcC-CCc----cCcCcEEEcccCCCCCCCC
Q 035526 426 FYVYSETEKLAGYY--IERGFWIGIQTSPFPPCVI-----EY--YPKLVSWAR-SHV----PQLECWTKVSVHPDAPMDW 491 (557)
Q Consensus 426 lYv~GG~~~i~~YD--~~~~~W~~i~~~p~p~~~~-----~~--~~~lv~~~g-G~~----~~~~~W~~v~~~p~~~~~~ 491 (557)
|+++.-...+..=| -..++|.+-. .|.+.... .| ...+.+.+| |.+ -..++|++.......+...
T Consensus 200 lw~~~~Gg~~~~s~~~~~~~~w~~~~-~~~~~~~~~~ld~a~~~~~~~wa~gg~G~l~~S~DgGktW~~~~~~~~~~~n~ 278 (302)
T PF14870_consen 200 LWMLARGGQIQFSDDPDDGETWSEPI-IPIKTNGYGILDLAYRPPNEIWAVGGSGTLLVSTDGGKTWQKDRVGENVPSNL 278 (302)
T ss_dssp EEEEETTTEEEEEE-TTEEEEE---B--TTSS--S-EEEEEESSSS-EEEEESTT-EEEESSTTSS-EE-GGGTTSSS--
T ss_pred EEEEeCCcEEEEccCCCCcccccccc-CCcccCceeeEEEEecCCCCEEEEeCCccEEEeCCCCccceECccccCCCCce
Confidence 88877444555555 4566787722 12221111 11 234444444 221 2278999986544333222
Q ss_pred CceEEeeCCEEEEEce
Q 035526 492 SAAFVADRNHIFGVEM 507 (557)
Q Consensus 492 ~~~~~~~~~~iyvvgG 507 (557)
-......+++-|++|-
T Consensus 279 ~~i~f~~~~~gf~lG~ 294 (302)
T PF14870_consen 279 YRIVFVNPDKGFVLGQ 294 (302)
T ss_dssp -EEEEEETTEEEEE-S
T ss_pred EEEEEcCCCceEEECC
Confidence 2233356788888774
No 83
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=75.75 E-value=1.1e+02 Score=32.23 Aligned_cols=56 Identities=9% Similarity=-0.091 Sum_probs=33.2
Q ss_pred eEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecC----CeEEEEECCCCcEEecc
Q 035526 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET----EKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 392 ~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~----~~i~~YD~~~~~W~~i~ 449 (557)
.++.+|..+..++.+..-.. ........-+++.+++... ..+..+|+.++.++.+.
T Consensus 303 ~iy~~d~~~~~~~~l~~~~~--~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~ 362 (417)
T TIGR02800 303 QIYMMDADGGEVRRLTFRGG--YNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLT 362 (417)
T ss_pred eEEEEECCCCCEEEeecCCC--CccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEcc
Confidence 68888888888877643211 1112223345655555433 27899999887666554
No 84
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=73.46 E-value=95 Score=30.35 Aligned_cols=61 Identities=13% Similarity=0.039 Sum_probs=32.4
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecC--CeEEEEECCCCc
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSET--EKLAGYYIERGF 444 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~--~~i~~YD~~~~~ 444 (557)
.+|+.++.+ ..+.+||+.+.+= +..++...........-++.+++++.. ..+..||..+..
T Consensus 86 ~l~~~~~~~------~~l~~~d~~~~~~--~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~ 148 (300)
T TIGR03866 86 ILYIANEDD------NLVTVIDIETRKV--LAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYE 148 (300)
T ss_pred EEEEEcCCC------CeEEEEECCCCeE--EeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCe
Confidence 566665422 3688899987542 222222111122223346766666654 246678887654
No 85
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=71.64 E-value=8.8 Score=26.21 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=19.0
Q ss_pred EEEECCEEEEEecCCeEEEEECCC
Q 035526 419 GVVCNGIFYVYSETEKLAGYYIER 442 (557)
Q Consensus 419 ~vv~~g~lYv~GG~~~i~~YD~~~ 442 (557)
.++.++.+|+.+....++++|+++
T Consensus 17 ~~v~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 17 PAVAGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp -EECTSEEEEE-TTSEEEEEETT-
T ss_pred CEEECCEEEEEcCCCEEEEEeCCC
Confidence 467799999999988999999875
No 86
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=71.38 E-value=36 Score=29.84 Aligned_cols=80 Identities=13% Similarity=0.136 Sum_probs=53.6
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCC--CcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDAS--ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRV 267 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~--p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v 267 (557)
++.||-+... .......+.+||..+.+|+.++.+ +........++.++|+|-++.-..... ...-++
T Consensus 5 nGvly~~a~~-~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~----------~~~~~i 73 (129)
T PF08268_consen 5 NGVLYWLAWS-EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGE----------PDSIDI 73 (129)
T ss_pred CcEEEeEEEE-CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCC----------cceEEE
Confidence 5666666554 223457799999999999887663 333356677888999998876543220 112478
Q ss_pred EEE-ecCCCcEEEc
Q 035526 268 LVF-SPLTKSWWKV 280 (557)
Q Consensus 268 ~~y-dp~t~~W~~l 280 (557)
|+. |..+++|.+.
T Consensus 74 WvLeD~~k~~Wsk~ 87 (129)
T PF08268_consen 74 WVLEDYEKQEWSKK 87 (129)
T ss_pred EEeeccccceEEEE
Confidence 887 4667899874
No 87
>PRK04792 tolB translocation protein TolB; Provisional
Probab=71.34 E-value=1.6e+02 Score=31.97 Aligned_cols=62 Identities=13% Similarity=0.029 Sum_probs=37.3
Q ss_pred cceEEEeeCCCCceEEccCCCcCcceeeEEEEEC-CEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEccc
Q 035526 205 SGEIHALDVSQDQWHRIDASILKGRFMFSVVSIM-DDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVAS 282 (557)
Q Consensus 205 ~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~-~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~ 282 (557)
...++.+|..+++-..+...+.. ......+-+ ..|++....++ ..+++++|..+++.+++..
T Consensus 241 ~~~L~~~dl~tg~~~~lt~~~g~--~~~~~wSPDG~~La~~~~~~g--------------~~~Iy~~dl~tg~~~~lt~ 303 (448)
T PRK04792 241 KAEIFVQDIYTQVREKVTSFPGI--NGAPRFSPDGKKLALVLSKDG--------------QPEIYVVDIATKALTRITR 303 (448)
T ss_pred CcEEEEEECCCCCeEEecCCCCC--cCCeeECCCCCEEEEEEeCCC--------------CeEEEEEECCCCCeEECcc
Confidence 35789999988877776654321 111122233 45665543222 2479999999988877654
No 88
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=67.53 E-value=1.4e+02 Score=29.98 Aligned_cols=78 Identities=13% Similarity=0.145 Sum_probs=49.7
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLV 269 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ 269 (557)
++.||.--|... ...+..||+.+++-....++|.. -++=+++.++++||..-= .....++
T Consensus 55 ~g~LyESTG~yG---~S~l~~~d~~tg~~~~~~~l~~~-~FgEGit~~~d~l~qLTW----------------k~~~~f~ 114 (264)
T PF05096_consen 55 DGTLYESTGLYG---QSSLRKVDLETGKVLQSVPLPPR-YFGEGITILGDKLYQLTW----------------KEGTGFV 114 (264)
T ss_dssp TTEEEEEECSTT---EEEEEEEETTTSSEEEEEE-TTT---EEEEEEETTEEEEEES----------------SSSEEEE
T ss_pred CCEEEEeCCCCC---cEEEEEEECCCCcEEEEEECCcc-ccceeEEEECCEEEEEEe----------------cCCeEEE
Confidence 455665555332 35788999999987766666653 567789999999998842 2347899
Q ss_pred EecCCCcEEEcccCCcCccc
Q 035526 270 FSPLTKSWWKVASMRYARSM 289 (557)
Q Consensus 270 ydp~t~~W~~l~~m~~~R~~ 289 (557)
||+.| ...+...+.+..+
T Consensus 115 yd~~t--l~~~~~~~y~~EG 132 (264)
T PF05096_consen 115 YDPNT--LKKIGTFPYPGEG 132 (264)
T ss_dssp EETTT--TEEEEEEE-SSS-
T ss_pred Ecccc--ceEEEEEecCCcc
Confidence 99875 4444444444333
No 89
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=66.12 E-value=1e+02 Score=34.29 Aligned_cols=62 Identities=16% Similarity=0.186 Sum_probs=40.6
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCC--cEEEccCCCCCCc-------CceEEEEECCEEEEEecCCeEEEEECCCCc
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFG-------VVSSGVVCNGIFYVYSETEKLAGYYIERGF 444 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~--~W~~v~~lp~~~~-------~~~~~vv~~g~lYv~GG~~~i~~YD~~~~~ 444 (557)
+||+.... ..+..+|..++ .|+.-...+.... .....++.+++||+......+.++|.++++
T Consensus 71 ~vyv~s~~-------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~dg~l~ALDa~TGk 141 (527)
T TIGR03075 71 VMYVTTSY-------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTLDARLVALDAKTGK 141 (527)
T ss_pred EEEEECCC-------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcCCCEEEEEECCCCC
Confidence 88886542 35888888875 5886543322111 011236678999987766799999998766
No 90
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=63.48 E-value=2.7 Score=42.76 Aligned_cols=44 Identities=25% Similarity=0.391 Sum_probs=37.3
Q ss_pred CCCCCHHHHHHHHhcC-----CccchhhhhhcccccccccCChhhhhhh
Q 035526 140 HIFLPDDTLEMCLVRF-----PLTSLMNARLVCKKWRYLTTTPRFLQMR 183 (557)
Q Consensus 140 ~~~lp~dl~~~il~rL-----P~~sl~~~~~vck~W~~l~~sp~~~~~~ 183 (557)
+..||+||+..||.++ .+.+|.++.+|||.|......|.+....
T Consensus 107 ~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R~~~lwR~a 155 (366)
T KOG2997|consen 107 ISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCARDPELWRLA 155 (366)
T ss_pred hhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHcChHHHHHH
Confidence 4689999999998864 4689999999999999999999876543
No 91
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=63.06 E-value=1.1e+02 Score=32.92 Aligned_cols=56 Identities=13% Similarity=0.139 Sum_probs=34.2
Q ss_pred ceEEEeeCCCCceEEccCC---CcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEE
Q 035526 206 GEIHALDVSQDQWHRIDAS---ILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWW 278 (557)
Q Consensus 206 ~~v~~yd~~~~~W~~l~~~---p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~ 278 (557)
.-++.||..+.+-.++.++ +.+.-..|.+.-.++ +.++-|.++ .+...-..|+.|.
T Consensus 280 ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~-fia~~G~~G----------------~I~lLhakT~eli 338 (514)
T KOG2055|consen 280 KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSN-FIAIAGNNG----------------HIHLLHAKTKELI 338 (514)
T ss_pred eEEEEeeccccccccccCCCCcccchhheeEecCCCC-eEEEcccCc----------------eEEeehhhhhhhh
Confidence 4578999999988887765 222222344444444 555555444 4666677777774
No 92
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=62.88 E-value=1.7e+02 Score=31.34 Aligned_cols=32 Identities=19% Similarity=0.257 Sum_probs=22.5
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDF 413 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~ 413 (557)
+..+++|. --.|++|+..+.+|+++..++...
T Consensus 445 t~L~~~g~------~l~Vy~~~k~~k~W~~~~~~~~~s 476 (506)
T KOG0289|consen 445 TYLGIAGS------DLQVYICKKKTKSWTEIKELADHS 476 (506)
T ss_pred CeEEeecc------eeEEEEEecccccceeeehhhhcc
Confidence 55566653 235788888999999997765543
No 93
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=61.77 E-value=1.8e+02 Score=32.45 Aligned_cols=56 Identities=13% Similarity=0.240 Sum_probs=34.4
Q ss_pred eEEEEeCCCC--cEEEcc-CCCCCCcCceEEEEECCEEEEEec------CCeEEEEECCCCc--EEe
Q 035526 392 SGEIYDSVSN--KWMEIQ-RLPVDFGVVSSGVVCNGIFYVYSE------TEKLAGYYIERGF--WIG 447 (557)
Q Consensus 392 ~ve~YD~~t~--~W~~v~-~lp~~~~~~~~~vv~~g~lYv~GG------~~~i~~YD~~~~~--W~~ 447 (557)
.+..+|..+. .|+.-. .........++-++.+++||+-.. ...+.+||+++++ |+.
T Consensus 131 ~l~ALDa~TGk~~W~~~~~~~~~~~~~tssP~v~~g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~ 197 (527)
T TIGR03075 131 RLVALDAKTGKVVWSKKNGDYKAGYTITAAPLVVKGKVITGISGGEFGVRGYVTAYDAKTGKLVWRR 197 (527)
T ss_pred EEEEEECCCCCEEeecccccccccccccCCcEEECCEEEEeecccccCCCcEEEEEECCCCceeEec
Confidence 5788888776 477542 222111112233677999988542 2479999998876 764
No 94
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=61.46 E-value=1.8e+02 Score=29.01 Aligned_cols=196 Identities=11% Similarity=0.096 Sum_probs=99.9
Q ss_pred CCCeEEEEeeecCCcccceEEEee----C-CCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccc
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALD----V-SQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKT 263 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd----~-~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~ 263 (557)
..+.+|++.+...+ .+..|. . ..++..+.-.+|-+ -.+-+-++.+|.+|---. .
T Consensus 29 ~~~~iy~~~~~~~~----~v~ey~~~~~f~~~~~~~~~~~Lp~~-~~GtG~vVYngslYY~~~----------------~ 87 (250)
T PF02191_consen 29 DSEKIYVTSGFSGN----TVYEYRNYEDFLRNGRSSRTYKLPYP-WQGTGHVVYNGSLYYNKY----------------N 87 (250)
T ss_pred CCCCEEEECccCCC----EEEEEcCHhHHhhcCCCceEEEEece-eccCCeEEECCcEEEEec----------------C
Confidence 35678888775432 444442 2 23333332233332 344556667887775432 2
Q ss_pred cceEEEEecCCCcEE---EcccCCcC-cc-----cce-EEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcc
Q 035526 264 HKRVLVFSPLTKSWW---KVASMRYA-RS-----MPI-LGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRL 333 (557)
Q Consensus 264 ~~~v~~ydp~t~~W~---~l~~m~~~-R~-----~~~-~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l 333 (557)
++.+.+||..+++=. .+|..... +. .+. +-.. .+. ++|+|+=... +....
T Consensus 88 s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~A-vDE---------------~GLWvIYat~----~~~g~ 147 (250)
T PF02191_consen 88 SRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFA-VDE---------------NGLWVIYATE----DNNGN 147 (250)
T ss_pred CceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEE-EcC---------------CCEEEEEecC----CCCCc
Confidence 468999999998644 44432211 00 000 0000 011 2676664322 11111
Q ss_pred cceeecccc----CCcccccCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEcc-C
Q 035526 334 SLRRQYRNS----FDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQ-R 408 (557)
Q Consensus 334 ~~v~~yd~~----~~~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~-~ 408 (557)
-.+.+.||. ...|....+.+..+.++++.+ .||++...+... ..-...||..+++=..+. +
T Consensus 148 ivvskld~~tL~v~~tw~T~~~k~~~~naFmvCG------------vLY~~~s~~~~~--~~I~yafDt~t~~~~~~~i~ 213 (250)
T PF02191_consen 148 IVVSKLDPETLSVEQTWNTSYPKRSAGNAFMVCG------------VLYATDSYDTRD--TEIFYAFDTYTGKEEDVSIP 213 (250)
T ss_pred EEEEeeCcccCceEEEEEeccCchhhcceeeEee------------EEEEEEECCCCC--cEEEEEEECCCCceeceeee
Confidence 122234443 345655555555566666655 899998875442 345688999988765442 1
Q ss_pred CCCCCcCceEEEE---ECCEEEEEecCCeEEEEECC
Q 035526 409 LPVDFGVVSSGVV---CNGIFYVYSETEKLAGYYIE 441 (557)
Q Consensus 409 lp~~~~~~~~~vv---~~g~lYv~GG~~~i~~YD~~ 441 (557)
++.+..... .+. .+.+||+.... .+..|++.
T Consensus 214 f~~~~~~~~-~l~YNP~dk~LY~wd~G-~~v~Y~v~ 247 (250)
T PF02191_consen 214 FPNPYGNIS-MLSYNPRDKKLYAWDNG-YQVTYDVR 247 (250)
T ss_pred eccccCceE-eeeECCCCCeEEEEECC-eEEEEEEE
Confidence 233323222 233 25778887643 56667653
No 95
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=59.67 E-value=1.1e+02 Score=32.00 Aligned_cols=69 Identities=23% Similarity=0.211 Sum_probs=38.7
Q ss_pred eEEEEEc--c-cCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECC--EEEEEe-cCCeEEEEECCCCcE
Q 035526 375 FVLIAVG--G-LGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNG--IFYVYS-ETEKLAGYYIERGFW 445 (557)
Q Consensus 375 ~~iyviG--G-~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g--~lYv~G-G~~~i~~YD~~~~~W 445 (557)
++||+.- | ......+-..||+||+++.+=-.--+++.+.. +..+.-++ .||... +...+.+||..+++-
T Consensus 250 ~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~--Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 250 GRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPID--SIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp TEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEES--EEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred CeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccc--eEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 3777753 2 22222456789999999986443333333211 22344344 577664 456899999998853
No 96
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=59.13 E-value=4.1e+02 Score=32.43 Aligned_cols=64 Identities=8% Similarity=0.033 Sum_probs=42.0
Q ss_pred eEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCC-----------CCcCc-eEEEEECCEEEEEecC-CeEEEEECC
Q 035526 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPV-----------DFGVV-SSGVVCNGIFYVYSET-EKLAGYYIE 441 (557)
Q Consensus 375 ~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~-----------~~~~~-~~~vv~~g~lYv~GG~-~~i~~YD~~ 441 (557)
|.|||.... ...|.+||+.++....+..... ..... ..++.-+|.+||.... +.|..+|++
T Consensus 815 G~LYVADs~------N~rIrviD~~tg~v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~ 888 (1057)
T PLN02919 815 GQIYVADSY------NHKIKKLDPATKRVTTLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLN 888 (1057)
T ss_pred CcEEEEECC------CCEEEEEECCCCeEEEEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECC
Confidence 478887753 3579999999988876643211 11111 1223347899998754 589999998
Q ss_pred CCc
Q 035526 442 RGF 444 (557)
Q Consensus 442 ~~~ 444 (557)
++.
T Consensus 889 ~~~ 891 (1057)
T PLN02919 889 KGE 891 (1057)
T ss_pred CCc
Confidence 875
No 97
>smart00284 OLF Olfactomedin-like domains.
Probab=57.06 E-value=1.6e+02 Score=29.55 Aligned_cols=73 Identities=16% Similarity=0.052 Sum_probs=48.6
Q ss_pred EEEEEcccCCCCCCCceEEEEeC----CCCcEEEccCCCCCCcCceEEEEECCEEEEEe-cCCeEEEEECCCCcEEeccC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDS----VSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYS-ETEKLAGYYIERGFWIGIQT 450 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~----~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~G-G~~~i~~YD~~~~~W~~i~~ 450 (557)
++|++.+.+. ..+.+..|.. ....+...-.+|.+..+.+ .++.||.||.-- +...|..||+.+++=.....
T Consensus 36 ~~wv~~~~~~---~~~~v~ey~~~~~f~~~~~~~~~~Lp~~~~GtG-~VVYngslYY~~~~s~~iiKydL~t~~v~~~~~ 111 (255)
T smart00284 36 LYWYMPLNTR---VLRSVREYSSMSDFQMGKNPTDHPLPHAGQGTG-VVVYNGSLYFNKFNSHDICRFDLTTETYQKEPL 111 (255)
T ss_pred eEEEEccccC---CCcEEEEecCHHHHhccCCceEEECCCcccccc-EEEECceEEEEecCCccEEEEECCCCcEEEEEe
Confidence 8999877642 2345666643 3445544445777666544 478899998864 45699999999988655555
Q ss_pred CC
Q 035526 451 SP 452 (557)
Q Consensus 451 ~p 452 (557)
+|
T Consensus 112 Lp 113 (255)
T smart00284 112 LN 113 (255)
T ss_pred cC
Confidence 54
No 98
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=56.58 E-value=2.7e+02 Score=29.54 Aligned_cols=54 Identities=17% Similarity=0.134 Sum_probs=32.9
Q ss_pred EEEEeCCCCcEEEccCCCCCCc----CceEE-------EEECCEEEEEecCCeEEEEECCCCcEEe
Q 035526 393 GEIYDSVSNKWMEIQRLPVDFG----VVSSG-------VVCNGIFYVYSETEKLAGYYIERGFWIG 447 (557)
Q Consensus 393 ve~YD~~t~~W~~v~~lp~~~~----~~~~~-------vv~~g~lYv~GG~~~i~~YD~~~~~W~~ 447 (557)
|+..|.+..+|.++..+....- ..+.. ..-+|.||+.... ...+||.+.++=..
T Consensus 288 VfklD~~~~~WveV~sLgd~aLFlG~~~s~sv~a~e~pG~k~NcIYFtdd~-~~~v~~~~dg~~~~ 352 (373)
T PLN03215 288 VYKFDDELAKWMEVKTLGDNAFVMATDTCFSVLAHEFYGCLPNSIYFTEDT-MPKVFKLDNGNGSS 352 (373)
T ss_pred EEEEcCCCCcEEEecccCCeEEEEECCccEEEecCCCCCccCCEEEEECCC-cceEEECCCCCccc
Confidence 3444778889999988753211 00111 1135788888644 67789988876333
No 99
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=56.28 E-value=3.8 Score=41.99 Aligned_cols=42 Identities=29% Similarity=0.449 Sum_probs=37.3
Q ss_pred CCCCCCC----HHHHHHHHhcCCccchhhhhhcccccccccCChhh
Q 035526 138 RMHIFLP----DDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPRF 179 (557)
Q Consensus 138 r~~~~lp----~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~~ 179 (557)
-|+..+| +++.++||+.|...+|.....+||+|+.+...+..
T Consensus 73 DFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~dg~~ 118 (499)
T KOG0281|consen 73 DFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSDGML 118 (499)
T ss_pred HHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhccchH
Confidence 4566889 99999999999999999999999999998887754
No 100
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=55.83 E-value=3.1e+02 Score=30.04 Aligned_cols=69 Identities=13% Similarity=0.085 Sum_probs=39.9
Q ss_pred CCCeEEEEeeecCCcccceEEEeeCCCCc--eEEccCCC----cCcceeeEEEEEC-CEEEEEcccCCCCCCccccCCcc
Q 035526 189 QNPWLFLFGAVKDGYYSGEIHALDVSQDQ--WHRIDASI----LKGRFMFSVVSIM-DDVYVVGGCSSLTSFGRVDGSSF 261 (557)
Q Consensus 189 ~~~~L~v~GG~~~~~~~~~v~~yd~~~~~--W~~l~~~p----~~~R~~~s~a~~~-~~IYViGG~~~~~~~~~~~~~~~ 261 (557)
.++.+|+.... ..++++|..+.+ |+.-...+ .+.-....++..+ +.||+...
T Consensus 60 ~~g~vy~~~~~------g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~--------------- 118 (488)
T cd00216 60 VDGDMYFTTSH------SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF--------------- 118 (488)
T ss_pred ECCEEEEeCCC------CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC---------------
Confidence 36777775432 468999998765 87633221 0000112234456 78887432
Q ss_pred cccceEEEEecCCC--cEEEc
Q 035526 262 KTHKRVLVFSPLTK--SWWKV 280 (557)
Q Consensus 262 ~~~~~v~~ydp~t~--~W~~l 280 (557)
...++.+|+.|. .|+.-
T Consensus 119 --~g~v~AlD~~TG~~~W~~~ 137 (488)
T cd00216 119 --DGRLVALDAETGKQVWKFG 137 (488)
T ss_pred --CCeEEEEECCCCCEeeeec
Confidence 136899998876 47753
No 101
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=55.63 E-value=1.9e+02 Score=32.30 Aligned_cols=47 Identities=19% Similarity=0.373 Sum_probs=40.2
Q ss_pred ccccccCCCCCCCHHHHHHHHhcCCccchhhhhhcccccccccCChh
Q 035526 132 DSVRNSRMHIFLPDDTLEMCLVRFPLTSLMNARLVCKKWRYLTTTPR 178 (557)
Q Consensus 132 ~l~~~~r~~~~lp~dl~~~il~rLP~~sl~~~~~vck~W~~l~~sp~ 178 (557)
+......++..||.++...|+..|+..++.....+|+.|+.+.....
T Consensus 100 ~~~~~~dfi~~lp~el~~~il~~Ld~~~l~~~~~v~~~w~~~~~~~~ 146 (537)
T KOG0274|consen 100 EPLGQRDFLSLLPSELSLHILSFLDGRDLLAVRQVCRNWNKLLDDDK 146 (537)
T ss_pred ccccccchhhcccchhcccccccCCHHHhhhhhhhcchhhhhhhccc
Confidence 33445677889999999999999999999999999999999887553
No 102
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=54.23 E-value=2.5e+02 Score=28.55 Aligned_cols=77 Identities=18% Similarity=0.217 Sum_probs=46.1
Q ss_pred CeEEEEeee-cCC---ccc-ceEEEeeCCCC-----ceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCc
Q 035526 191 PWLFLFGAV-KDG---YYS-GEIHALDVSQD-----QWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSS 260 (557)
Q Consensus 191 ~~L~v~GG~-~~~---~~~-~~v~~yd~~~~-----~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~ 260 (557)
..++++|.. ..+ ... ..+..|+.... ++..+.....+ -.-++++..++.|.+.-|
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~~~~-g~V~ai~~~~~~lv~~~g-------------- 106 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHSTEVK-GPVTAICSFNGRLVVAVG-------------- 106 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEEEES-S-EEEEEEETTEEEEEET--------------
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEEeec-CcceEhhhhCCEEEEeec--------------
Confidence 455666653 211 123 77899988885 55555444332 234677778888666555
Q ss_pred ccccceEEEEecCCCc-EEEcccCCcC
Q 035526 261 FKTHKRVLVFSPLTKS-WWKVASMRYA 286 (557)
Q Consensus 261 ~~~~~~v~~ydp~t~~-W~~l~~m~~~ 286 (557)
+.+.+|+...++ +.+.+.+..+
T Consensus 107 ----~~l~v~~l~~~~~l~~~~~~~~~ 129 (321)
T PF03178_consen 107 ----NKLYVYDLDNSKTLLKKAFYDSP 129 (321)
T ss_dssp ----TEEEEEEEETTSSEEEEEEE-BS
T ss_pred ----CEEEEEEccCcccchhhheecce
Confidence 368888888877 7777655443
No 103
>PRK04922 tolB translocation protein TolB; Provisional
Probab=48.30 E-value=3.7e+02 Score=28.74 Aligned_cols=61 Identities=8% Similarity=-0.046 Sum_probs=35.8
Q ss_pred cceEEEeeCCCCceEEccCCCcCcceeeEEEEECC-EEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc
Q 035526 205 SGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD-DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA 281 (557)
Q Consensus 205 ~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~-~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~ 281 (557)
...++.+|..+++-..+...+.. ......+-++ .|++....++ ..+++++|+.+++-+++.
T Consensus 227 ~~~l~~~dl~~g~~~~l~~~~g~--~~~~~~SpDG~~l~~~~s~~g--------------~~~Iy~~d~~~g~~~~lt 288 (433)
T PRK04922 227 RSAIYVQDLATGQRELVASFRGI--NGAPSFSPDGRRLALTLSRDG--------------NPEIYVMDLGSRQLTRLT 288 (433)
T ss_pred CcEEEEEECCCCCEEEeccCCCC--ccCceECCCCCEEEEEEeCCC--------------CceEEEEECCCCCeEECc
Confidence 35688999988887777654321 1111222334 5655433222 137999999888766554
No 104
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=47.75 E-value=3.2e+02 Score=27.76 Aligned_cols=69 Identities=10% Similarity=0.144 Sum_probs=34.6
Q ss_pred EEEEEcccCCCCCCCceEEEEeCC--CCcEEEc---cCCCCCCc--CceEE--EEEC-CEEEEEec-CCeEEEEECCC--
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSV--SNKWMEI---QRLPVDFG--VVSSG--VVCN-GIFYVYSE-TEKLAGYYIER-- 442 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~--t~~W~~v---~~lp~~~~--~~~~~--vv~~-g~lYv~GG-~~~i~~YD~~~-- 442 (557)
++|+.... .+++.+||.. +++.+.+ ..+|.... .+.+. ..-+ ..+|+... .+.|..||.++
T Consensus 188 ~lyv~~~~------~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~ 261 (330)
T PRK11028 188 YAYCVNEL------NSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDG 261 (330)
T ss_pred EEEEEecC------CCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCC
Confidence 67776532 3567777765 4455443 33333211 11111 1223 46888743 46788887743
Q ss_pred CcEEeccC
Q 035526 443 GFWIGIQT 450 (557)
Q Consensus 443 ~~W~~i~~ 450 (557)
..++.+..
T Consensus 262 ~~~~~~~~ 269 (330)
T PRK11028 262 SVLSFEGH 269 (330)
T ss_pred CeEEEeEE
Confidence 44554444
No 105
>PF07707 BACK: BTB And C-terminal Kelch; InterPro: IPR011705 This domain is found associated with (IPR000210 from INTERPRO) and (IPR006652 from INTERPRO). BTB (broad-complex, tramtrack and bric a brac) is a Kelch related domain, also known as the POZ domain []. BTB proteins are divided into subgroups depending on what domain lies at the C terminus. Despite the divergence in sequences, the BTB fold is highly conserved. BTB-Kelch proteins have Kelch repeats that form a beta-propeller that can interact with actin filaments []. BTB and C-terminal Kelch (BACK) together constitute a novel conserved domain, which is thought to have a possible role in substrate orientation in Cullin3-based E3 ligase complexes. Four domains, namely the BTB domain, a kelch domain, a BACK domain, and an intervening region (IVR) make up the aryl hydrocarbon receptor (AHR); a ligand-activated transcription factor []. This entry represents the domain associated with BTB and Kelch.; PDB: 3HVE_A 2EQX_A 3I3N_A 4AP2_A 4APF_A.
Probab=47.62 E-value=1.8 Score=36.16 Aligned_cols=32 Identities=19% Similarity=0.422 Sum_probs=26.6
Q ss_pred eeeecCCc--cccccccccccCCCCCCCHHHHHH
Q 035526 119 FWKKSNSK--NLELQDSVRNSRMHIFLPDDTLEM 150 (557)
Q Consensus 119 ~W~~~~~~--~~~l~~l~~~~r~~~~lp~dl~~~ 150 (557)
.|++|+.. ..++.++++.+|++.+.|++|.+.
T Consensus 68 ~W~~~~~~~r~~~~~~Ll~~iR~~~l~~~~L~~~ 101 (103)
T PF07707_consen 68 RWLKHNPENREEHLKELLSCIRFPLLSPEELQNV 101 (103)
T ss_dssp HHHHCTHHHHTTTHHHHHCCCHHHCT-HHHHHHC
T ss_pred HHHHhCHHHHHHHHHHHHHhCCcccCCHHHHHHH
Confidence 49999987 589999999999998888887653
No 106
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=47.23 E-value=2.4e+02 Score=26.30 Aligned_cols=53 Identities=15% Similarity=0.138 Sum_probs=26.5
Q ss_pred ceEEEEeCCCCcEEEccCCCCCC-cCceEEEEECC-EEEEEecCCeEEEEECCCCcE
Q 035526 391 DSGEIYDSVSNKWMEIQRLPVDF-GVVSSGVVCNG-IFYVYSETEKLAGYYIERGFW 445 (557)
Q Consensus 391 ~~ve~YD~~t~~W~~v~~lp~~~-~~~~~~vv~~g-~lYv~GG~~~i~~YD~~~~~W 445 (557)
..+.+||..+.+= +..+.... ........-++ .+++.+....+..||+.+..-
T Consensus 157 ~~i~i~d~~~~~~--~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~ 211 (289)
T cd00200 157 GTIKLWDLRTGKC--VATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC 211 (289)
T ss_pred CcEEEEEcccccc--ceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce
Confidence 3588898864431 11111111 11122222344 455555456899999986543
No 107
>PRK00178 tolB translocation protein TolB; Provisional
Probab=46.80 E-value=3.8e+02 Score=28.45 Aligned_cols=58 Identities=5% Similarity=-0.094 Sum_probs=33.1
Q ss_pred ceEEEEeCCCCcEEEccCCCCCCcCceEEEEEC-CEEEEEecC---CeEEEEECCCCcEEeccC
Q 035526 391 DSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCN-GIFYVYSET---EKLAGYYIERGFWIGIQT 450 (557)
Q Consensus 391 ~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~-g~lYv~GG~---~~i~~YD~~~~~W~~i~~ 450 (557)
..++.+|..+++++.+.... .........-+ +.|++.... ..+..+|+.++..+.+..
T Consensus 311 ~~iy~~d~~~g~~~~lt~~~--~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 311 PQIYKVNVNGGRAERVTFVG--NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ceEEEEECCCCCEEEeecCC--CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccC
Confidence 36788888888887764211 11111112223 445554422 368899998887766653
No 108
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=44.56 E-value=2.8e+02 Score=26.15 Aligned_cols=58 Identities=14% Similarity=0.076 Sum_probs=36.6
Q ss_pred eEEEEEcccCCCCCCCceEEEEeCCCCcEEE-----c----cCCCCCCcCceEEEEEC-CEEEEEecCCeEEEEECCCCc
Q 035526 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWME-----I----QRLPVDFGVVSSGVVCN-GIFYVYSETEKLAGYYIERGF 444 (557)
Q Consensus 375 ~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~-----v----~~lp~~~~~~~~~vv~~-g~lYv~GG~~~i~~YD~~~~~ 444 (557)
+++|++.|. ..+.||..+++-.. + ..+|... .++...+ +++|++-|. ..+.||..+.+
T Consensus 111 ~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i~~~w~g~p~~i---daa~~~~~~~~yfF~g~-~y~~~d~~~~~ 178 (194)
T cd00094 111 GKTYFFKGD--------KYWRYDEKTQKMDPGYPKLIETDFPGVPDKV---DAAFRWLDGYYYFFKGD-QYWRFDPRSKE 178 (194)
T ss_pred CEEEEEeCC--------EEEEEeCCCccccCCCCcchhhcCCCcCCCc---ceeEEeCCCcEEEEECC-EEEEEeCccce
Confidence 499999883 56677765554321 1 1233221 2333344 899999986 99999998766
No 109
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=44.11 E-value=3.5e+02 Score=27.21 Aligned_cols=43 Identities=9% Similarity=-0.029 Sum_probs=26.4
Q ss_pred ceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc
Q 035526 229 RFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA 281 (557)
Q Consensus 229 R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~ 281 (557)
-..-++-..+|.||+.--..... ++-+.+.+.+-.-..|..+.
T Consensus 191 AsEPCvkyY~g~LyLtTRgt~~~----------~~GS~L~rs~d~G~~w~slr 233 (367)
T PF12217_consen 191 ASEPCVKYYDGVLYLTTRGTLPT----------NPGSSLHRSDDNGQNWSSLR 233 (367)
T ss_dssp EEEEEEEEETTEEEEEEEES-TT----------S---EEEEESSTTSS-EEEE
T ss_pred cccchhhhhCCEEEEEEcCcCCC----------CCcceeeeecccCCchhhcc
Confidence 34556777899999985432221 23457888888888998753
No 110
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=42.18 E-value=57 Score=20.69 Aligned_cols=25 Identities=28% Similarity=0.329 Sum_probs=19.6
Q ss_pred EEECCEEEEEecCCeEEEEECCCCc
Q 035526 420 VVCNGIFYVYSETEKLAGYYIERGF 444 (557)
Q Consensus 420 vv~~g~lYv~GG~~~i~~YD~~~~~ 444 (557)
...++.+|+......+.++|.++++
T Consensus 3 ~~~~~~v~~~~~~g~l~a~d~~~G~ 27 (33)
T smart00564 3 VLSDGTVYVGSTDGTLYALDAKTGE 27 (33)
T ss_pred EEECCEEEEEcCCCEEEEEEcccCc
Confidence 4457788888777899999997754
No 111
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=40.89 E-value=5.9e+02 Score=29.85 Aligned_cols=35 Identities=17% Similarity=0.372 Sum_probs=24.5
Q ss_pred eEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCC--cEEEcccC
Q 035526 232 FSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTK--SWWKVASM 283 (557)
Q Consensus 232 ~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~--~W~~l~~m 283 (557)
.+-+++++.||+... .+.|+.+|+.|. .|+.-+..
T Consensus 188 ~TPlvvgg~lYv~t~-----------------~~~V~ALDa~TGk~lW~~d~~~ 224 (764)
T TIGR03074 188 ATPLKVGDTLYLCTP-----------------HNKVIALDAATGKEKWKFDPKL 224 (764)
T ss_pred cCCEEECCEEEEECC-----------------CCeEEEEECCCCcEEEEEcCCC
Confidence 455678999999754 246888888876 47765543
No 112
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=37.09 E-value=2.1e+02 Score=28.52 Aligned_cols=53 Identities=15% Similarity=0.181 Sum_probs=35.4
Q ss_pred eCCCCcEEEc--cCCCCCCcCceEEEEECCEEEEEecCCeEEEEECCCC-cEEeccC
Q 035526 397 DSVSNKWMEI--QRLPVDFGVVSSGVVCNGIFYVYSETEKLAGYYIERG-FWIGIQT 450 (557)
Q Consensus 397 D~~t~~W~~v--~~lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD~~~~-~W~~i~~ 450 (557)
+-+.+.|+.- .++|..... .+-...++.|-|.||.+.+..+-.+.+ +|..+..
T Consensus 241 ~~e~e~wk~tll~~f~~~~w~-vSWS~sGn~LaVs~GdNkvtlwke~~~Gkw~~v~~ 296 (299)
T KOG1332|consen 241 DEEYEPWKKTLLEEFPDVVWR-VSWSLSGNILAVSGGDNKVTLWKENVDGKWEEVGE 296 (299)
T ss_pred cCccCcccccccccCCcceEE-EEEeccccEEEEecCCcEEEEEEeCCCCcEEEccc
Confidence 3445678754 345554443 222456888888899999999888765 9998764
No 113
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=37.08 E-value=4.7e+02 Score=26.68 Aligned_cols=93 Identities=13% Similarity=0.133 Sum_probs=47.2
Q ss_pred CCCCcCceEEEEECCEEEEEecC-CeEEEEECCCCcEEeccCCCCC-C-cccc----cCCE--EEEEcCCC----ccCcC
Q 035526 410 PVDFGVVSSGVVCNGIFYVYSET-EKLAGYYIERGFWIGIQTSPFP-P-CVIE----YYPK--LVSWARSH----VPQLE 476 (557)
Q Consensus 410 p~~~~~~~~~vv~~g~lYv~GG~-~~i~~YD~~~~~W~~i~~~p~p-~-~~~~----~~~~--lv~~~gG~----~~~~~ 476 (557)
|+...-...++.-+|.+|+..-. +.|...|+.+..=++++. |.+ . ..++ --+. +-.|++|. ++...
T Consensus 186 PqG~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~-P~~~~~gsRriwsdpig~~wittwg~g~l~rfdPs~~ 264 (353)
T COG4257 186 PQGGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQ-PNALKAGSRRIWSDPIGRAWITTWGTGSLHRFDPSVT 264 (353)
T ss_pred CCCCCCcceEECCCCcEEEEeccccceEEcccccCCcceecC-CCcccccccccccCccCcEEEeccCCceeeEeCcccc
Confidence 33333334557779999987533 478888888775444433 222 0 0000 0111 12244443 55677
Q ss_pred cEEEcccCCCCCCCCCceEEeeCCEEEE
Q 035526 477 CWTKVSVHPDAPMDWSAAFVADRNHIFG 504 (557)
Q Consensus 477 ~W~~v~~~p~~~~~~~~~~~~~~~~iyv 504 (557)
+|.+- ++|...-+.-..+|-..+++++
T Consensus 265 sW~ey-pLPgs~arpys~rVD~~grVW~ 291 (353)
T COG4257 265 SWIEY-PLPGSKARPYSMRVDRHGRVWL 291 (353)
T ss_pred cceee-eCCCCCCCcceeeeccCCcEEe
Confidence 78876 3444333333345555666663
No 114
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=36.95 E-value=5.7e+02 Score=27.60 Aligned_cols=60 Identities=12% Similarity=0.143 Sum_probs=33.2
Q ss_pred eEEEEeCCCCcEEEccCCCCCCcCceEEEEE--CCEEEEEecCC-eEEEEECCCCcEEeccCCCC
Q 035526 392 SGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC--NGIFYVYSETE-KLAGYYIERGFWIGIQTSPF 453 (557)
Q Consensus 392 ~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~--~g~lYv~GG~~-~i~~YD~~~~~W~~i~~~p~ 453 (557)
+|.++|+...+ ....++.+-......+.+ -|...+++|.+ .|+.|+-.+..|+.+..++.
T Consensus 412 ~V~lwDLRKl~--n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~ 474 (506)
T KOG0289|consen 412 SVKLWDLRKLK--NFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELAD 474 (506)
T ss_pred eEEEEEehhhc--ccceeeccccccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhh
Confidence 37778876654 222222221111112222 35556666654 67777888899999887653
No 115
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=36.88 E-value=2.3e+02 Score=27.44 Aligned_cols=67 Identities=18% Similarity=-0.026 Sum_probs=45.9
Q ss_pred eEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEE-ECCEEEEEecCCeEEEEECCCCcEEeccCCC
Q 035526 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVV-CNGIFYVYSETEKLAGYYIERGFWIGIQTSP 452 (557)
Q Consensus 375 ~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv-~~g~lYv~GG~~~i~~YD~~~~~W~~i~~~p 452 (557)
+.+|++.-. -..+..||+.+++-+.+. .+. ..+.++- -++.||+.... .+..+|+.+++++.+...+
T Consensus 12 g~l~~~D~~------~~~i~~~~~~~~~~~~~~-~~~---~~G~~~~~~~g~l~v~~~~-~~~~~d~~~g~~~~~~~~~ 79 (246)
T PF08450_consen 12 GRLYWVDIP------GGRIYRVDPDTGEVEVID-LPG---PNGMAFDRPDGRLYVADSG-GIAVVDPDTGKVTVLADLP 79 (246)
T ss_dssp TEEEEEETT------TTEEEEEETTTTEEEEEE-SSS---EEEEEEECTTSEEEEEETT-CEEEEETTTTEEEEEEEEE
T ss_pred CEEEEEEcC------CCEEEEEECCCCeEEEEe-cCC---CceEEEEccCCEEEEEEcC-ceEEEecCCCcEEEEeecc
Confidence 488888642 357999999998766543 232 1122222 37889888764 6677799999999887753
No 116
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=35.33 E-value=4.9e+02 Score=26.40 Aligned_cols=63 Identities=19% Similarity=0.131 Sum_probs=40.2
Q ss_pred ceEEEEeCCCCc-EEEccCCCCCCcCceEEEEECCEEEEEecCC--eEEEEECCCCcEEeccCCCCC
Q 035526 391 DSGEIYDSVSNK-WMEIQRLPVDFGVVSSGVVCNGIFYVYSETE--KLAGYYIERGFWIGIQTSPFP 454 (557)
Q Consensus 391 ~~ve~YD~~t~~-W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~--~i~~YD~~~~~W~~i~~~p~p 454 (557)
+.+.+|+...++ +...+.+..+... .+..+.++.|++-.-.. .+..|+.+..+-..+..-..|
T Consensus 107 ~~l~v~~l~~~~~l~~~~~~~~~~~i-~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~ 172 (321)
T PF03178_consen 107 NKLYVYDLDNSKTLLKKAFYDSPFYI-TSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQP 172 (321)
T ss_dssp TEEEEEEEETTSSEEEEEEE-BSSSE-EEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-
T ss_pred CEEEEEEccCcccchhhheecceEEE-EEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCC
Confidence 468888888888 8888776665543 44567789777765555 555678766666666653333
No 117
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=34.57 E-value=5.3e+02 Score=26.57 Aligned_cols=69 Identities=12% Similarity=0.115 Sum_probs=37.8
Q ss_pred EEEEEcccCCCCCCCceEEEEeC--CCCcEEEccCCCCCCcCceEEEE--ECCEEEEEec-CCeEEEE--ECCCCcEEec
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDS--VSNKWMEIQRLPVDFGVVSSGVV--CNGIFYVYSE-TEKLAGY--YIERGFWIGI 448 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~--~t~~W~~v~~lp~~~~~~~~~vv--~~g~lYv~GG-~~~i~~Y--D~~~~~W~~i 448 (557)
.||+.... .+++-+|+. .+++-+.+...+.........++ -+..|||.+. .+.|.+| |.+++.+..+
T Consensus 258 ~lyvsnr~------~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 258 FLYVSNRG------SNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp EEEEEECT------TTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred EEEEEecc------CCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 56665432 345666665 45566666554442111112222 3566777664 3567766 5678888887
Q ss_pred cC
Q 035526 449 QT 450 (557)
Q Consensus 449 ~~ 450 (557)
..
T Consensus 332 ~~ 333 (345)
T PF10282_consen 332 GS 333 (345)
T ss_dssp EE
T ss_pred cc
Confidence 63
No 118
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=34.57 E-value=3.8e+02 Score=24.90 Aligned_cols=59 Identities=12% Similarity=0.162 Sum_probs=31.5
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEE-CCEEEEEec-CCeEEEEECCC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVC-NGIFYVYSE-TEKLAGYYIER 442 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~-~g~lYv~GG-~~~i~~YD~~~ 442 (557)
+.+++++.+ ..+.+||..+.+-...-. ..... ....... ++.+++.++ ...+..||..+
T Consensus 190 ~~l~~~~~~------~~i~i~d~~~~~~~~~~~-~~~~~-i~~~~~~~~~~~~~~~~~~~~i~i~~~~~ 250 (289)
T cd00200 190 EKLLSSSSD------GTIKLWDLSTGKCLGTLR-GHENG-VNSVAFSPDGYLLASGSEDGTIRVWDLRT 250 (289)
T ss_pred CEEEEecCC------CcEEEEECCCCceecchh-hcCCc-eEEEEEcCCCcEEEEEcCCCcEEEEEcCC
Confidence 355555542 358899987644332211 11111 1222333 356666666 56899999875
No 119
>smart00875 BACK BTB And C-terminal Kelch. The BACK domain is found juxtaposed to the BTB domain; they are separated by as little as two residues.
Probab=34.26 E-value=7.6 Score=31.89 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=24.5
Q ss_pred eeeecCCc-cccccccccccCCCCCCCHHHH
Q 035526 119 FWKKSNSK-NLELQDSVRNSRMHIFLPDDTL 148 (557)
Q Consensus 119 ~W~~~~~~-~~~l~~l~~~~r~~~~lp~dl~ 148 (557)
.|++|+.+ +.++.++++++|++.+.|+++.
T Consensus 68 ~W~~~~~~~~~~~~~ll~~ir~~~~~~~~l~ 98 (101)
T smart00875 68 RWVKHDPERRRHLPELLSHVRFPLLSPEYLL 98 (101)
T ss_pred HHHHCCHHHHHHHHHHHHhCCCCCCCHHHHH
Confidence 49999976 4588999999999987777654
No 120
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=32.67 E-value=7.5e+02 Score=29.00 Aligned_cols=62 Identities=15% Similarity=0.181 Sum_probs=36.6
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCC--cEEEccCCCCCCc-Cc---------------------eEEEEECCEEEEEec
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSN--KWMEIQRLPVDFG-VV---------------------SSGVVCNGIFYVYSE 431 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~--~W~~v~~lp~~~~-~~---------------------~~~vv~~g~lYv~GG 431 (557)
+||+... .+.+..+|..|+ .|+.-...+.... .+ ...++++++||+-..
T Consensus 196 ~lYv~t~-------~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~ 268 (764)
T TIGR03074 196 TLYLCTP-------HNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTS 268 (764)
T ss_pred EEEEECC-------CCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecC
Confidence 8888754 246777887765 4776544332110 00 001345668887665
Q ss_pred CCeEEEEECCCCc
Q 035526 432 TEKLAGYYIERGF 444 (557)
Q Consensus 432 ~~~i~~YD~~~~~ 444 (557)
...+.++|.++++
T Consensus 269 Dg~LiALDA~TGk 281 (764)
T TIGR03074 269 DARLIALDADTGK 281 (764)
T ss_pred CCeEEEEECCCCC
Confidence 5678888888765
No 121
>PRK05137 tolB translocation protein TolB; Provisional
Probab=32.35 E-value=6.5e+02 Score=26.88 Aligned_cols=61 Identities=8% Similarity=-0.038 Sum_probs=37.8
Q ss_pred ceEEEeeCCCCceEEccCCCcCcceeeEEEEECC-EEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEccc
Q 035526 206 GEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD-DVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVAS 282 (557)
Q Consensus 206 ~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~-~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~ 282 (557)
..++.+|+.+++...+...+.. ......+-++ .|++....++ ..++|++|..++.-+++..
T Consensus 226 ~~i~~~dl~~g~~~~l~~~~g~--~~~~~~SPDG~~la~~~~~~g--------------~~~Iy~~d~~~~~~~~Lt~ 287 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNFPGM--TFAPRFSPDGRKVVMSLSQGG--------------NTDIYTMDLRSGTTTRLTD 287 (435)
T ss_pred CEEEEEECCCCcEEEeecCCCc--ccCcEECCCCCEEEEEEecCC--------------CceEEEEECCCCceEEccC
Confidence 5799999999888777654422 1112223344 5554433222 2479999999888777754
No 122
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=30.31 E-value=3.6e+02 Score=30.09 Aligned_cols=65 Identities=18% Similarity=0.180 Sum_probs=39.0
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLV 269 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ 269 (557)
..-||+.|. ..+++++|...++|-.--.....+-...++.. -+.|+++||.++ .|+.
T Consensus 145 scDly~~gs------g~evYRlNLEqGrfL~P~~~~~~~lN~v~in~-~hgLla~Gt~~g----------------~VEf 201 (703)
T KOG2321|consen 145 SCDLYLVGS------GSEVYRLNLEQGRFLNPFETDSGELNVVSINE-EHGLLACGTEDG----------------VVEF 201 (703)
T ss_pred CccEEEeec------CcceEEEEccccccccccccccccceeeeecC-ccceEEecccCc----------------eEEE
Confidence 445777664 35799999999998432111111122222222 246778888554 6899
Q ss_pred EecCCCcE
Q 035526 270 FSPLTKSW 277 (557)
Q Consensus 270 ydp~t~~W 277 (557)
|||.+++-
T Consensus 202 wDpR~ksr 209 (703)
T KOG2321|consen 202 WDPRDKSR 209 (703)
T ss_pred ecchhhhh
Confidence 99988754
No 123
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=29.99 E-value=6.2e+02 Score=25.95 Aligned_cols=171 Identities=15% Similarity=0.164 Sum_probs=71.8
Q ss_pred eEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCcC
Q 035526 207 EIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRYA 286 (557)
Q Consensus 207 ~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~~ 286 (557)
.++.=.-.-.+|+.+..-.. -....+....+--||+-+..+. -+...||-...|....-.. .
T Consensus 125 ~iy~T~DgG~tW~~~~~~~~--gs~~~~~r~~dG~~vavs~~G~---------------~~~s~~~G~~~w~~~~r~~-~ 186 (302)
T PF14870_consen 125 AIYRTTDGGKTWQAVVSETS--GSINDITRSSDGRYVAVSSRGN---------------FYSSWDPGQTTWQPHNRNS-S 186 (302)
T ss_dssp -EEEESSTTSSEEEEE-S------EEEEEE-TTS-EEEEETTSS---------------EEEEE-TT-SS-EEEE--S-S
T ss_pred cEEEeCCCCCCeeEcccCCc--ceeEeEEECCCCcEEEEECccc---------------EEEEecCCCccceEEccCc-c
Confidence 45555556678988765332 2223344444333444443332 3456788888998764333 3
Q ss_pred cccceEEEEecCCCcccccccCCCCCCCCcEEEEc-ccccccCCCCcccceeeccccCCccccc-CCCCCCCceE--EEe
Q 035526 287 RSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLG-GVSDVYEDPHRLSLRRQYRNSFDGFEGS-LLPNRKSYKF--IRQ 362 (557)
Q Consensus 287 R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~G-G~~~~y~~~~~l~~v~~yd~~~~~W~~~-~~~~r~~~~~--~~~ 362 (557)
|.-.+++... ++ .+++++ |-. -..+. .....+.|.++ .|.....+.. +.+
T Consensus 187 ~riq~~gf~~-~~----------------~lw~~~~Gg~------~~~s~---~~~~~~~w~~~~~~~~~~~~~~ld~a~ 240 (302)
T PF14870_consen 187 RRIQSMGFSP-DG----------------NLWMLARGGQ------IQFSD---DPDDGETWSEPIIPIKTNGYGILDLAY 240 (302)
T ss_dssp S-EEEEEE-T-TS-----------------EEEEETTTE------EEEEE----TTEEEEE---B-TTSS--S-EEEEEE
T ss_pred ceehhceecC-CC----------------CEEEEeCCcE------EEEcc---CCCCccccccccCCcccCceeeEEEEe
Confidence 3333333322 22 565554 211 00000 11244567773 3333334432 233
Q ss_pred ccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccC---CCCCCcCceEEEEECCEEEEEecCCeEEEEE
Q 035526 363 KSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQR---LPVDFGVVSSGVVCNGIFYVYSETEKLAGYY 439 (557)
Q Consensus 363 ~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~---lp~~~~~~~~~vv~~g~lYv~GG~~~i~~YD 439 (557)
..+ ..+++.||.+. +.+=.-.-++|++... .|..... ...+-+++-||+|....+++|.
T Consensus 241 ~~~---------~~~wa~gg~G~-------l~~S~DgGktW~~~~~~~~~~~n~~~--i~f~~~~~gf~lG~~G~ll~~~ 302 (302)
T PF14870_consen 241 RPP---------NEIWAVGGSGT-------LLVSTDGGKTWQKDRVGENVPSNLYR--IVFVNPDKGFVLGQDGVLLRYV 302 (302)
T ss_dssp SSS---------S-EEEEESTT--------EEEESSTTSS-EE-GGGTTSSS---E--EEEEETTEEEEE-STTEEEEE-
T ss_pred cCC---------CCEEEEeCCcc-------EEEeCCCCccceECccccCCCCceEE--EEEcCCCceEEECCCcEEEEeC
Confidence 321 38999998642 2222334568998753 4443332 3344567999999988888883
No 124
>PTZ00421 coronin; Provisional
Probab=29.88 E-value=7.9e+02 Score=27.09 Aligned_cols=25 Identities=8% Similarity=0.076 Sum_probs=16.3
Q ss_pred CEEEEEe-cCCeEEEEECCCCcEEec
Q 035526 424 GIFYVYS-ETEKLAGYYIERGFWIGI 448 (557)
Q Consensus 424 g~lYv~G-G~~~i~~YD~~~~~W~~i 448 (557)
+.||+.| |...|..||+.++.....
T Consensus 272 ~~L~lggkgDg~Iriwdl~~~~~~~~ 297 (493)
T PTZ00421 272 NLLYIGSKGEGNIRCFELMNERLTFC 297 (493)
T ss_pred CEEEEEEeCCCeEEEEEeeCCceEEE
Confidence 3444444 355899999988776543
No 125
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=29.72 E-value=5.4e+02 Score=25.58 Aligned_cols=71 Identities=15% Similarity=0.247 Sum_probs=46.9
Q ss_pred EEEEEcccCCCCCCCceEEEEeC-----CCCcEEEccCCCCCCcCceEEEEECCEEEEEe-cCCeEEEEECCCCcEEecc
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDS-----VSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYS-ETEKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~-----~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~G-G~~~i~~YD~~~~~W~~i~ 449 (557)
+||++.+..+. .++.|.. ..+.+...-.||.+..+.+. ++.||.||.-- +...|.+||+.++.=..-.
T Consensus 32 ~iy~~~~~~~~-----~v~ey~~~~~f~~~~~~~~~~~Lp~~~~GtG~-vVYngslYY~~~~s~~IvkydL~t~~v~~~~ 105 (250)
T PF02191_consen 32 KIYVTSGFSGN-----TVYEYRNYEDFLRNGRSSRTYKLPYPWQGTGH-VVYNGSLYYNKYNSRNIVKYDLTTRSVVARR 105 (250)
T ss_pred CEEEECccCCC-----EEEEEcCHhHHhhcCCCceEEEEeceeccCCe-EEECCcEEEEecCCceEEEEECcCCcEEEEE
Confidence 89999987543 5566643 33444444557766665444 77899988754 5679999999988755333
Q ss_pred CCC
Q 035526 450 TSP 452 (557)
Q Consensus 450 ~~p 452 (557)
.+|
T Consensus 106 ~L~ 108 (250)
T PF02191_consen 106 ELP 108 (250)
T ss_pred ECC
Confidence 333
No 126
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=28.16 E-value=4.2e+02 Score=27.83 Aligned_cols=67 Identities=9% Similarity=-0.162 Sum_probs=41.8
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEec----------CCeEEEEECCCCcE
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSE----------TEKLAGYYIERGFW 445 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG----------~~~i~~YD~~~~~W 445 (557)
++||....... ..+.+.++|..+. +.+..++....-+....--+..||+... .+.|..||+.+.+=
T Consensus 14 ~v~V~d~~~~~--~~~~v~ViD~~~~--~v~g~i~~G~~P~~~~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~ 89 (352)
T TIGR02658 14 RVYVLDPGHFA--ATTQVYTIDGEAG--RVLGMTDGGFLPNPVVASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLP 89 (352)
T ss_pred EEEEECCcccc--cCceEEEEECCCC--EEEEEEEccCCCceeECCCCCEEEEEeccccccccCCCCCEEEEEECccCcE
Confidence 68887764222 1278999998874 4444445443333322223457898765 36999999998764
Q ss_pred E
Q 035526 446 I 446 (557)
Q Consensus 446 ~ 446 (557)
.
T Consensus 90 ~ 90 (352)
T TIGR02658 90 I 90 (352)
T ss_pred E
Confidence 3
No 127
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=27.23 E-value=7e+02 Score=25.64 Aligned_cols=156 Identities=13% Similarity=0.064 Sum_probs=0.0
Q ss_pred ceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcccCCc
Q 035526 206 GEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVASMRY 285 (557)
Q Consensus 206 ~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~~m~~ 285 (557)
..+..||..++ .+.-.-...-.-..++..+..=.++||.++ .|-+||..+..=.++..-..
T Consensus 35 gslrlYdv~~~---~l~~~~~~~~plL~c~F~d~~~~~~G~~dg----------------~vr~~Dln~~~~~~igth~~ 95 (323)
T KOG1036|consen 35 GSLRLYDVPAN---SLKLKFKHGAPLLDCAFADESTIVTGGLDG----------------QVRRYDLNTGNEDQIGTHDE 95 (323)
T ss_pred CcEEEEeccch---hhhhheecCCceeeeeccCCceEEEeccCc----------------eEEEEEecCCcceeeccCCC
Q ss_pred CcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccccCCCCCCCceEEEeccc
Q 035526 286 ARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEGSLLPNRKSYKFIRQKSD 365 (557)
Q Consensus 286 ~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~~~~~~r~~~~~~~~~~d 365 (557)
+-..-.-.... ..++.||++ .++..+|+....=......+..-+++.+.+
T Consensus 96 ~i~ci~~~~~~-------------------~~vIsgsWD---------~~ik~wD~R~~~~~~~~d~~kkVy~~~v~g-- 145 (323)
T KOG1036|consen 96 GIRCIEYSYEV-------------------GCVISGSWD---------KTIKFWDPRNKVVVGTFDQGKKVYCMDVSG-- 145 (323)
T ss_pred ceEEEEeeccC-------------------CeEEEcccC---------ccEEEEeccccccccccccCceEEEEeccC--
Q ss_pred hhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCC-------------cEEEccCCCCCCcCceEEEEECCEEEE
Q 035526 366 QSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSN-------------KWMEIQRLPVDFGVVSSGVVCNGIFYV 428 (557)
Q Consensus 366 ~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~-------------~W~~v~~lp~~~~~~~~~vv~~g~lYv 428 (557)
.++++|+ .-..+.+||+.+. +=+-++-+| ...+..+ ..++|+++|
T Consensus 146 ----------~~LvVg~------~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~p-n~eGy~~-sSieGRVav 203 (323)
T KOG1036|consen 146 ----------NRLVVGT------SDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVP-NGEGYVV-SSIEGRVAV 203 (323)
T ss_pred ----------CEEEEee------cCceEEEEEcccccchhhhccccceeEEEEEEEec-CCCceEE-EeecceEEE
No 128
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=26.62 E-value=1.3e+02 Score=30.49 Aligned_cols=61 Identities=20% Similarity=0.226 Sum_probs=37.5
Q ss_pred cceEEEeeCCCCceEEccCCCcCcceeeEEEEECCEEEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc
Q 035526 205 SGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA 281 (557)
Q Consensus 205 ~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~ 281 (557)
...+++|||+..+|..-+-.-..+|-..--+--.+.++.--- ..+.+.+|||.|.+.+.+|
T Consensus 253 ~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~grVW~sea----------------~agai~rfdpeta~ftv~p 313 (353)
T COG4257 253 TGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHGRVWLSEA----------------DAGAIGRFDPETARFTVLP 313 (353)
T ss_pred CceeeEeCcccccceeeeCCCCCCCcceeeeccCCcEEeecc----------------ccCceeecCcccceEEEec
Confidence 346899999999997643322222332222222345554211 2457999999999998775
No 129
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=26.09 E-value=8.3e+02 Score=26.12 Aligned_cols=29 Identities=7% Similarity=-0.109 Sum_probs=23.7
Q ss_pred EECCEEEEEecCCeEEEEECCCCcEEecc
Q 035526 421 VCNGIFYVYSETEKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 421 v~~g~lYv~GG~~~i~~YD~~~~~W~~i~ 449 (557)
.-++.+++.|....+..-...-.+|+..+
T Consensus 336 ~~d~~~~a~G~~G~v~~s~D~G~tW~~~~ 364 (398)
T PLN00033 336 RSKKEAWAAGGSGILLRSTDGGKSWKRDK 364 (398)
T ss_pred cCCCcEEEEECCCcEEEeCCCCcceeEcc
Confidence 34778999998877887777888999976
No 130
>PTZ00420 coronin; Provisional
Probab=25.70 E-value=9.9e+02 Score=26.90 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=19.1
Q ss_pred CCEEEEEe-cCCeEEEEECCCCcEEecc
Q 035526 423 NGIFYVYS-ETEKLAGYYIERGFWIGIQ 449 (557)
Q Consensus 423 ~g~lYv~G-G~~~i~~YD~~~~~W~~i~ 449 (557)
.+.+|+.| |...+..|+...+.-..+.
T Consensus 274 tg~l~lsGkGD~tIr~~e~~~~~~~~l~ 301 (568)
T PTZ00420 274 TGLIYLIGKGDGNCRYYQHSLGSIRKVN 301 (568)
T ss_pred CCCEEEEEECCCeEEEEEccCCcEEeec
Confidence 48889888 4458999998776533333
No 131
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=25.15 E-value=6.9e+02 Score=24.88 Aligned_cols=63 Identities=24% Similarity=0.251 Sum_probs=47.3
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECCEEEEEecCC-eEEEEECCCCcE
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNGIFYVYSETE-KLAGYYIERGFW 445 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g~lYv~GG~~-~i~~YD~~~~~W 445 (557)
.+++.|+++ .++.++|-.+++-+.+.-+........+ +.+.+...|.|..+ .+..||+..++-
T Consensus 114 SVv~SgsfD------~s~r~wDCRS~s~ePiQildea~D~V~S-i~v~~heIvaGS~DGtvRtydiR~G~l 177 (307)
T KOG0316|consen 114 SVVASGSFD------SSVRLWDCRSRSFEPIQILDEAKDGVSS-IDVAEHEIVAGSVDGTVRTYDIRKGTL 177 (307)
T ss_pred eEEEecccc------ceeEEEEcccCCCCccchhhhhcCceeE-EEecccEEEeeccCCcEEEEEeeccee
Confidence 677777764 4688999999988888877776666554 56677777777654 889999987763
No 132
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=23.24 E-value=1.2e+03 Score=27.08 Aligned_cols=63 Identities=11% Similarity=0.204 Sum_probs=35.3
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCc-EEEccCCCCCCcCceEEEEEC--CEEEEEecCC--eEEEEECCCCcEEe
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNK-WMEIQRLPVDFGVVSSGVVCN--GIFYVYSETE--KLAGYYIERGFWIG 447 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~-W~~v~~lp~~~~~~~~~vv~~--g~lYv~GG~~--~i~~YD~~~~~W~~ 447 (557)
+..+....++ +|-.+|...-+ .+... .|.+... +++.+| |.|.+.|+.+ .|.+.+.+|++--.
T Consensus 405 ~~llssSLDG------tVRAwDlkRYrNfRTft-~P~p~Qf--scvavD~sGelV~AG~~d~F~IfvWS~qTGqllD 472 (893)
T KOG0291|consen 405 NVLLSSSLDG------TVRAWDLKRYRNFRTFT-SPEPIQF--SCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD 472 (893)
T ss_pred CEEEEeecCC------eEEeeeecccceeeeec-CCCceee--eEEEEcCCCCEEEeeccceEEEEEEEeecCeeee
Confidence 5555544443 46666665432 22221 2443333 334456 9999999887 66677777776443
No 133
>PRK01742 tolB translocation protein TolB; Provisional
Probab=22.16 E-value=9.7e+02 Score=25.50 Aligned_cols=60 Identities=5% Similarity=-0.066 Sum_probs=33.0
Q ss_pred ceEEEeeCCCCceEEccCCCcCcceeeEEEEECCE-EEEEcccCCCCCCccccCCcccccceEEEEecCCCcEEEcc
Q 035526 206 GEIHALDVSQDQWHRIDASILKGRFMFSVVSIMDD-VYVVGGCSSLTSFGRVDGSSFKTHKRVLVFSPLTKSWWKVA 281 (557)
Q Consensus 206 ~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~~-IYViGG~~~~~~~~~~~~~~~~~~~~v~~ydp~t~~W~~l~ 281 (557)
..++.+|..+++-..+...+.. ......+-++. |++....++. ..+|.+|+.++..+++.
T Consensus 228 ~~i~i~dl~tg~~~~l~~~~g~--~~~~~wSPDG~~La~~~~~~g~--------------~~Iy~~d~~~~~~~~lt 288 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASFRGH--NGAPAFSPDGSRLAFASSKDGV--------------LNIYVMGANGGTPSQLT 288 (429)
T ss_pred cEEEEEeCCCCceEEEecCCCc--cCceeECCCCCEEEEEEecCCc--------------EEEEEEECCCCCeEeec
Confidence 4688889888766666544321 11122233454 4443322221 26889998887766554
No 134
>PLN00181 protein SPA1-RELATED; Provisional
Probab=21.96 E-value=1.3e+03 Score=26.90 Aligned_cols=62 Identities=6% Similarity=0.022 Sum_probs=30.5
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCC----cEEEccCCCCCCcCc-eEEEEECCEEEEEecC-CeEEEEECCCC
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSN----KWMEIQRLPVDFGVV-SSGVVCNGIFYVYSET-EKLAGYYIERG 443 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~----~W~~v~~lp~~~~~~-~~~vv~~g~lYv~GG~-~~i~~YD~~~~ 443 (557)
..++.|+.+ ..+.+||..+. .|..+..+....... ..+...++.+.+.|+. ..+..||....
T Consensus 673 ~~lvs~s~D------~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~ 740 (793)
T PLN00181 673 STLVSSSTD------NTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFP 740 (793)
T ss_pred CEEEEEECC------CEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCC
Confidence 456666643 35778887643 233332221111111 1223335565566654 47888886543
No 135
>COG4447 Uncharacterized protein related to plant photosystem II stability/assembly factor [General function prediction only]
Probab=21.33 E-value=8.9e+02 Score=24.76 Aligned_cols=253 Identities=13% Similarity=0.093 Sum_probs=119.7
Q ss_pred CCeEEEEeeecCCcccceEEEeeCCCCceEEccCCCcCccee-eEEEEECCEEEEEcccCCCCCCccccCCcccccceEE
Q 035526 190 NPWLFLFGAVKDGYYSGEIHALDVSQDQWHRIDASILKGRFM-FSVVSIMDDVYVVGGCSSLTSFGRVDGSSFKTHKRVL 268 (557)
Q Consensus 190 ~~~L~v~GG~~~~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~-~s~a~~~~~IYViGG~~~~~~~~~~~~~~~~~~~~v~ 268 (557)
....+++|+. ..+..-|-..+.|.+.-... +|+. +++..++.+=.++|- -..++
T Consensus 54 g~~gwlVg~r------gtiletdd~g~tw~qal~~~--gr~~f~sv~f~~~egw~vGe-----------------~sqll 108 (339)
T COG4447 54 GSHGWLVGGR------GTILETDDGGITWAQALDFL--GRHAFHSVSFLGMEGWIVGE-----------------PSQLL 108 (339)
T ss_pred CcceEEEcCc------ceEEEecCCcccchhhhchh--hhhheeeeeeecccccccCC-----------------cceEE
Confidence 5678888874 24555677778897754432 2443 455555655666654 12566
Q ss_pred EEecCCCcEEEcccCCcCcccceEEEEecCCCcccccccCCCCCCCCcEEEEcccccccCCCCcccceeeccccCCcccc
Q 035526 269 VFSPLTKSWWKVASMRYARSMPILGISEVSPEFSIIPCHQSHQDRRFPRSRLGGVSDVYEDPHRLSLRRQYRNSFDGFEG 348 (557)
Q Consensus 269 ~ydp~t~~W~~l~~m~~~R~~~~~~v~~~~g~~~~~~~~~~~~~~r~~lyv~GG~~~~y~~~~~l~~v~~yd~~~~~W~~ 348 (557)
.=+-.-.+|.++|.-. .+..+-..+...+. ..-+++|-+..+|. -+.....|+.
T Consensus 109 ~T~DgGqsWARi~~~e-~~eg~~~sI~f~d~---------------q~g~m~gd~Gail~----------T~DgGk~Wk~ 162 (339)
T COG4447 109 HTTDGGQSWARIPLSE-KLEGFPDSITFLDD---------------QRGEMLGDQGAILK----------TTDGGKNWKA 162 (339)
T ss_pred EecCCCcchhhchhhc-CCCCCcceeEEecc---------------hhhhhhcccceEEE----------ecCCcccHhH
Confidence 6666677998886432 22222222222111 12355554333331 1222345655
Q ss_pred cCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEEEEECC--EE
Q 035526 349 SLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSGVVCNG--IF 426 (557)
Q Consensus 349 ~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~vv~~g--~l 426 (557)
..+..-- .++.+ .......+..+++|-.+.. .-..+.....|..-.+-...+.. .....-++ -+
T Consensus 163 l~e~~v~---~~~~n----~ia~s~dng~vaVg~rGs~------f~T~~aGqt~~~~~g~~s~~~le-tmg~adag~~g~ 228 (339)
T COG4447 163 LVEKAVG---LAVPN----EIARSADNGYVAVGARGSF------FSTWGAGQTVWLPHGRNSSRRLE-TMGLADAGSKGL 228 (339)
T ss_pred hcccccc---hhhhh----hhhhhccCCeEEEecCcce------EecCCCCccEEeccCCCccchhc-ccccccCCccce
Confidence 1111000 00000 0000111256666654321 11233444445543332221111 12222344 36
Q ss_pred EEEecCCeEEEEECCCCcEEeccCCCCC----Cccc----ccCCEEEEEcC-CCccC----cCcEEEcccCCCCCCCCCc
Q 035526 427 YVYSETEKLAGYYIERGFWIGIQTSPFP----PCVI----EYYPKLVSWAR-SHVPQ----LECWTKVSVHPDAPMDWSA 493 (557)
Q Consensus 427 Yv~GG~~~i~~YD~~~~~W~~i~~~p~p----~~~~----~~~~~lv~~~g-G~~~~----~~~W~~v~~~p~~~~~~~~ 493 (557)
++.|+.......+..-+.|+.+...-.. ..+- .--+.+++.+. |.+.. ..+|.+....++.......
T Consensus 229 la~g~qg~~f~~~~~gD~wsd~~~~~~~g~~~~Gl~d~a~~a~~~v~v~G~gGnvl~StdgG~t~skd~g~~er~s~l~~ 308 (339)
T COG4447 229 LARGGQGDQFSWVCGGDEWSDQGEPVNLGRRSWGLLDFAPRAPPEVWVSGIGGNVLASTDGGTTWSKDGGVEERVSNLYS 308 (339)
T ss_pred EEEccccceeecCCCcccccccccchhcccCCCccccccccCCCCeEEeccCccEEEecCCCeeEeccCChhhhhhhhhe
Confidence 7788887788888889999987651111 1111 11234444332 44322 6789988777765443333
Q ss_pred eEEeeCCEEEEEce
Q 035526 494 AFVADRNHIFGVEM 507 (557)
Q Consensus 494 ~~~~~~~~iyvvgG 507 (557)
....-.++.|++|=
T Consensus 309 V~~ts~~~~~l~Gq 322 (339)
T COG4447 309 VVFTSPKAGFLCGQ 322 (339)
T ss_pred EEeccCCceEEEcC
Confidence 33355666776663
No 136
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=21.28 E-value=1.2e+03 Score=26.25 Aligned_cols=94 Identities=12% Similarity=0.053 Sum_probs=49.5
Q ss_pred eeeccccCCcccccCCCCCCCceEEEeccchhhhhhccceEEEEEcccCCCCCCCceEEEEeCCCCcEEEc-------cC
Q 035526 336 RRQYRNSFDGFEGSLLPNRKSYKFIRQKSDQSIAKASKRFVLIAVGGLGSWDEPLDSGEIYDSVSNKWMEI-------QR 408 (557)
Q Consensus 336 v~~yd~~~~~W~~~~~~~r~~~~~~~~~~d~~~~~~~~~~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v-------~~ 408 (557)
+.+++.....|-.|....-...-++.++.. .-|+++||.+ ..||.+||.+.+=... ..
T Consensus 157 vYRlNLEqGrfL~P~~~~~~~lN~v~in~~---------hgLla~Gt~~------g~VEfwDpR~ksrv~~l~~~~~v~s 221 (703)
T KOG2321|consen 157 VYRLNLEQGRFLNPFETDSGELNVVSINEE---------HGLLACGTED------GVVEFWDPRDKSRVGTLDAASSVNS 221 (703)
T ss_pred eEEEEccccccccccccccccceeeeecCc---------cceEEecccC------ceEEEecchhhhhheeeecccccCC
Confidence 445666666666543333222223333321 1588888854 3689999987643221 11
Q ss_pred CCCCCc--CceEEEEECCEEEEEecC--CeEEEEECCCCc
Q 035526 409 LPVDFG--VVSSGVVCNGIFYVYSET--EKLAGYYIERGF 444 (557)
Q Consensus 409 lp~~~~--~~~~~vv~~g~lYv~GG~--~~i~~YD~~~~~ 444 (557)
.|..-. ...+..+-|+-|.+--|. ..++.||+.+.+
T Consensus 222 ~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 222 HPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASK 261 (703)
T ss_pred CccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCC
Confidence 222111 122223345466665554 489999998765
No 137
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=20.79 E-value=1.1e+03 Score=25.62 Aligned_cols=28 Identities=11% Similarity=0.202 Sum_probs=20.8
Q ss_pred eEEEEECCEEEEEecCC-eEEEEECCCCc
Q 035526 417 SSGVVCNGIFYVYSETE-KLAGYYIERGF 444 (557)
Q Consensus 417 ~~~vv~~g~lYv~GG~~-~i~~YD~~~~~ 444 (557)
+.++..+|.+.+.|+.+ .+.+.|+...+
T Consensus 282 cLais~DgtlLlSGd~dg~VcvWdi~S~Q 310 (476)
T KOG0646|consen 282 CLAISTDGTLLLSGDEDGKVCVWDIYSKQ 310 (476)
T ss_pred EEEEecCccEEEeeCCCCCEEEEecchHH
Confidence 33466799999999875 77788886554
No 138
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=20.79 E-value=7e+02 Score=23.34 Aligned_cols=61 Identities=15% Similarity=0.069 Sum_probs=34.2
Q ss_pred eEEEEEcccCCCCCCCceEEEEeCCCCcEEE---cc--CCCCCCcCceEEEEE--CCEEEEEecCCeEEEEECCCCc
Q 035526 375 FVLIAVGGLGSWDEPLDSGEIYDSVSNKWME---IQ--RLPVDFGVVSSGVVC--NGIFYVYSETEKLAGYYIERGF 444 (557)
Q Consensus 375 ~~iyviGG~~~~~~~l~~ve~YD~~t~~W~~---v~--~lp~~~~~~~~~vv~--~g~lYv~GG~~~i~~YD~~~~~ 444 (557)
+++|++-|. ..++||..+..+.. +. .+|......-++... ++++|++.|. ..+.||..+++
T Consensus 63 ~~~yfFkg~--------~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~-~y~ry~~~~~~ 130 (194)
T cd00094 63 GKIYFFKGD--------KYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD-KYWRYDEKTQK 130 (194)
T ss_pred CEEEEECCC--------EEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC-EEEEEeCCCcc
Confidence 488888773 46667655422211 11 122111212233333 6899999985 88999986654
No 139
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=20.56 E-value=4e+02 Score=27.87 Aligned_cols=70 Identities=13% Similarity=0.123 Sum_probs=38.8
Q ss_pred CCeEEEEeeec-C---CcccceEEEeeCCCCceEEccCCCcCcceeeEEEEECC---EEEEEcccCCCCCCccccCCccc
Q 035526 190 NPWLFLFGAVK-D---GYYSGEIHALDVSQDQWHRIDASILKGRFMFSVVSIMD---DVYVVGGCSSLTSFGRVDGSSFK 262 (557)
Q Consensus 190 ~~~L~v~GG~~-~---~~~~~~v~~yd~~~~~W~~l~~~p~~~R~~~s~a~~~~---~IYViGG~~~~~~~~~~~~~~~~ 262 (557)
.+.|||+--.. + ..+..++|.||+.+++= +..++.. ...-++.+..+ .||.+-+.
T Consensus 249 ~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~kr--v~Ri~l~-~~~~Si~Vsqd~~P~L~~~~~~--------------- 310 (342)
T PF06433_consen 249 SGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKR--VARIPLE-HPIDSIAVSQDDKPLLYALSAG--------------- 310 (342)
T ss_dssp TTEEEEEEEE--TT-TTS-EEEEEEEETTTTEE--EEEEEEE-EEESEEEEESSSS-EEEEEETT---------------
T ss_pred cCeEEEEecCCCCCCccCCceEEEEEECCCCeE--EEEEeCC-CccceEEEccCCCcEEEEEcCC---------------
Confidence 56677764321 1 23678999999999873 3332222 22224444433 67765331
Q ss_pred ccceEEEEecCCCcEE
Q 035526 263 THKRVLVFSPLTKSWW 278 (557)
Q Consensus 263 ~~~~v~~ydp~t~~W~ 278 (557)
...+.+||+.|++-.
T Consensus 311 -~~~l~v~D~~tGk~~ 325 (342)
T PF06433_consen 311 -DGTLDVYDAATGKLV 325 (342)
T ss_dssp -TTEEEEEETTT--EE
T ss_pred -CCeEEEEeCcCCcEE
Confidence 237999999998543
No 140
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=20.51 E-value=1e+03 Score=25.13 Aligned_cols=61 Identities=10% Similarity=0.112 Sum_probs=33.7
Q ss_pred EEEEEcccCCCCCCCceEEEEeCCCCcEEEccCCCCCCcCceEE-EEECCEEEEEecC-CeEEEEECCCCc
Q 035526 376 VLIAVGGLGSWDEPLDSGEIYDSVSNKWMEIQRLPVDFGVVSSG-VVCNGIFYVYSET-EKLAGYYIERGF 444 (557)
Q Consensus 376 ~iyviGG~~~~~~~l~~ve~YD~~t~~W~~v~~lp~~~~~~~~~-vv~~g~lYv~GG~-~~i~~YD~~~~~ 444 (557)
.|++.|-.++ ++++|..-+..=.++ |+-......++ ..-+|+..+.|-. ..|..+|+.+.+
T Consensus 161 ~illAG~~DG------svWmw~ip~~~~~kv--~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~ 223 (399)
T KOG0296|consen 161 HILLAGSTDG------SVWMWQIPSQALCKV--MSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQ 223 (399)
T ss_pred cEEEeecCCC------cEEEEECCCcceeeE--ecCCCCCcccccccCCCceEEEEecCceEEEEecCCCc
Confidence 7777776543 588887766532222 22211111112 4445666665544 378888988874
Done!