BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035528
DICDDIIDVHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLIL
YEVISFACFLMSSLCSKSLKVLINLKKIKRKIKLKRIQKLEGPFKNILLSGTWRLFLLVL
SIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYAPSMVFAV
IATAPRH

High Scoring Gene Products

Symbol, full name Information P value
AT3G07510 protein from Arabidopsis thaliana 5.2e-28
MEE60
AT5G05950
protein from Arabidopsis thaliana 2.9e-16
AT3G46890 protein from Arabidopsis thaliana 5.0e-12

Back to top

Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035528
        (187 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2079666 - symbol:AT3G07510 "AT3G07510" species...   203  5.2e-28   2
TAIR|locus:2153689 - symbol:MEE60 "AT5G05950" species:370...   202  2.9e-16   1
TAIR|locus:2102742 - symbol:AT3G46890 "AT3G46890" species...   162  5.0e-12   1


>TAIR|locus:2079666 [details] [associations]
            symbol:AT3G07510 "AT3G07510" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002686 GenomeReviews:BA000014_GR
            UniGene:At.48631 UniGene:At.71201 EMBL:AF370475 EMBL:AY081696
            IPI:IPI00522062 RefSeq:NP_001078120.1 RefSeq:NP_566310.1
            EnsemblPlants:AT3G07510.1 EnsemblPlants:AT3G07510.2 GeneID:819939
            KEGG:ath:AT3G07510 TAIR:At3g07510 eggNOG:NOG246438
            HOGENOM:HOG000240599 InParanoid:Q94K16 OMA:VIQIRLG PhylomeDB:Q94K16
            ProtClustDB:CLSN2721714 ArrayExpress:Q94K16 Genevestigator:Q94K16
            Uniprot:Q94K16
        Length = 189

 Score = 203 (76.5 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 41/66 (62%), Positives = 50/66 (75%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLSFASRDQRSLDDRLECDPDVSVGKRLILYEVISFAC 68
             VH+ ALD LVNVNSLFTIAVFVGLS A+  Q SL+ R  CD    V K+L+++EV+SF+ 
Sbjct:    26 VHVSALDGLVNVNSLFTIAVFVGLSLATPGQHSLEQRSSCDASADVAKKLLVFEVVSFSF 85

Query:    69 FLMSSL 74
             FL SSL
Sbjct:    86 FLFSSL 91

 Score = 125 (49.1 bits), Expect = 5.2e-28, Sum P(2) = 5.2e-28
 Identities = 26/62 (41%), Positives = 40/62 (64%)

Query:   118 LVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVXXXXXXYAPSMV 177
             ++ S V S +G +F+ LSMVNVIQ+++G LSCGS  A  +VA+L  +V      Y  + +
Sbjct:   125 MMASAVGSVMGCLFLMLSMVNVIQIRLGLLSCGSKSAAQAVATLVTLVSSALLIYISTAI 184

Query:   178 FA 179
             +A
Sbjct:   185 YA 186


>TAIR|locus:2153689 [details] [associations]
            symbol:MEE60 "AT5G05950" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009793
            "embryo development ending in seed dormancy" evidence=IMP]
            [GO:0006661 "phosphatidylinositol biosynthetic process"
            evidence=RCA] EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0009793
            EMBL:AB017060 HOGENOM:HOG000240599 ProtClustDB:CLSN2721714
            EMBL:AY086454 EMBL:BT025529 EMBL:AK228786 IPI:IPI00528332
            RefSeq:NP_196214.1 UniGene:At.32928 STRING:Q9FI91
            EnsemblPlants:AT5G05950.1 GeneID:830480 KEGG:ath:AT5G05950
            TAIR:At5g05950 eggNOG:NOG248420 InParanoid:Q9FI91 OMA:FIGLAWN
            PhylomeDB:Q9FI91 Genevestigator:Q9FI91 Uniprot:Q9FI91
        Length = 175

 Score = 202 (76.2 bits), Expect = 2.9e-16, P = 2.9e-16
 Identities = 56/173 (32%), Positives = 83/173 (47%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLSFASRD-QRSLDDRLECDPDVSVGKRLILYEVISFA 67
             +H+ ALD +VNVNSLFT+AVF+GL++   D   SL     C P   + + L+ + V SFA
Sbjct:     5 IHITALDGIVNVNSLFTLAVFIGLAWNPTDPDNSLVTDPNCVPTARMAENLVAFHVYSFA 64

Query:    68 CFLMSSLCSXXXXXXXXXXXXXXXXXXXXXXXXEGPFKNILLSGTWRLFLLVLSIVASFI 127
              FL SSL +                          P    +     R F +V S + S  
Sbjct:    65 SFLFSSLIALGLKQAMRLNIASSFHISTRID----PVVYYVNKTALR-FGMVTSGLGSVC 119

Query:   128 GIVFVTLSMVNVIQVKVGKLSCG-SVYALTSVASLCGIVXXXXXXYAPSMVFA 179
             G  F+ L+++NV+Q+K+G L CG S +   +V  L  +V      Y   M++A
Sbjct:   120 GCGFLMLALINVVQIKLGTLGCGASGHTYAAVVPLVILVPSALFIYVSLMLYA 172


>TAIR|locus:2102742 [details] [associations]
            symbol:AT3G46890 "AT3G46890" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0005575
            "cellular_component" evidence=ND] [GO:0008150 "biological_process"
            evidence=ND] EMBL:CP002686 GenomeReviews:BA000014_GR EMBL:AL096859
            HOGENOM:HOG000240599 ProtClustDB:CLSN2721714 EMBL:BT010845
            EMBL:BT011314 IPI:IPI00547121 PIR:T12959 RefSeq:NP_190273.1
            UniGene:At.35872 EnsemblPlants:AT3G46890.1 GeneID:823842
            KEGG:ath:AT3G46890 TAIR:At3g46890 eggNOG:NOG237103 OMA:GTSIHIT
            PhylomeDB:Q9STG1 Genevestigator:Q9STG1 Uniprot:Q9STG1
        Length = 204

 Score = 162 (62.1 bits), Expect = 5.0e-12, P = 5.0e-12
 Identities = 54/189 (28%), Positives = 91/189 (48%)

Query:     9 VHLKALDDLVNVNSLFTIAVFVGLS------FASRDQRSLDDRLE-C--DPDVSVGKRLI 59
             +H+ A+D +VNVNSLF++A+F+GL+      F      S +  L  C      ++ +RL+
Sbjct:    21 IHVTAIDGIVNVNSLFSLALFLGLTTSGNITFPVSSSASENHHLRRCISAKGPALAERLV 80

Query:    60 LYEVISFACFLMSSLCSXXXXXXXXXXXXXXXXXXXXXXXXEGPFKNILLSGTWRLFL-- 117
                V SF+ FL SSL +                              +L +G  R+ L  
Sbjct:    81 SSHVYSFSLFLFSSLIAMSLKQAIRTTTTTTNGNCLEEEA------RVLNAGEGRVNLAA 134

Query:   118 ----LVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCG-SVYALTSVASLCGIVXXXXXXY 172
                 +V S VAS +G  F+T+++V+++Q+K+G L C  S +AL ++  L  +V      Y
Sbjct:   135 LRVGIVASCVASVLGCGFLTMALVDLVQIKLGPLECKRSFHALAAIVPLVVLVPSALIIY 194

Query:   173 APSMVFAVI 181
                +++A I
Sbjct:   195 VFLVLYAFI 203


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.142   0.419    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      187       157   0.00079  106 3  11 22  0.38    31
                                                     30  0.42    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  121 KB (2079 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:03
  No. of threads or processors used:  24
  Search cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:31
  Total cpu time:  11.82u 0.08s 11.90t   Elapsed:  00:00:34
  Start:  Thu May  9 20:01:22 2013   End:  Thu May  9 20:01:56 2013

Back to top