Query 035528
Match_columns 187
No_of_seqs 59 out of 61
Neff 3.7
Searched_HMMs 46136
Date Fri Mar 29 03:45:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035528.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035528hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF11779 DUF3317: Protein of u 25.0 52 0.0011 22.9 1.7 18 170-187 35-52 (58)
2 PF14927 Neurensin: Neurensin 22.5 1.4E+02 0.003 24.6 4.0 34 104-137 88-122 (140)
3 PF02038 ATP1G1_PLM_MAT8: ATP1 21.9 1.7E+02 0.0036 20.5 3.7 20 112-131 12-32 (50)
4 PF04306 DUF456: Protein of un 21.5 1.2E+02 0.0026 24.3 3.4 20 113-132 60-79 (140)
5 COG5567 Predicted small peripl 19.0 1E+02 0.0022 22.2 2.2 18 113-130 4-21 (58)
6 COG1963 Uncharacterized protei 18.7 5.8E+02 0.013 21.6 7.9 109 65-182 12-152 (153)
7 PF04156 IncA: IncA protein; 18.6 1.4E+02 0.0031 23.9 3.3 8 124-131 21-28 (191)
8 PF02681 DUF212: Divergent PAP 17.6 3.5E+02 0.0076 22.3 5.3 23 70-92 11-33 (141)
9 PF06692 MNSV_P7B: Melon necro 17.1 34 0.00074 24.7 -0.6 32 47-78 5-36 (61)
10 PRK07419 1,4-dihydroxy-2-napht 17.0 4.5E+02 0.0098 23.6 6.3 65 65-132 46-114 (304)
No 1
>PF11779 DUF3317: Protein of unknown function (DUF3317); InterPro: IPR024512 Serine palmitoyltransferase (SPT) catalyzes the first committed step in sphingolipid biosynthesis. In mammals, two small subunits of serine palmitoyltransferase, ssSPTa and ssSPTb, substantially enhance the activity of SPT, conferring full enzyme activity upon it []. The 2 ssSPT isoforms share a conserved hydrophobic central domain, which is predicted to reside in the membrane. This entry represents the small subunits of serine palmitoyltransferase. It also includes a number of putative uncharacterised proteins from fungi and plants.
Probab=24.99 E-value=52 Score=22.88 Aligned_cols=18 Identities=28% Similarity=0.469 Sum_probs=12.5
Q ss_pred HHHHhHHHHHHHhhcCCC
Q 035528 170 LLYAPSMVFAVIATAPRH 187 (187)
Q Consensus 170 ~iyv~~v~YAf~~~~p~~ 187 (187)
++....+.||.+.|+|+|
T Consensus 35 ~~l~~l~~~~~~~ylP~h 52 (58)
T PF11779_consen 35 LLLLSLILYATYLYLPSH 52 (58)
T ss_pred HHHHHHHHHHHHHHhHHH
Confidence 344556677888888876
No 2
>PF14927 Neurensin: Neurensin
Probab=22.50 E-value=1.4e+02 Score=24.61 Aligned_cols=34 Identities=12% Similarity=-0.043 Sum_probs=24.9
Q ss_pred cchhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 035528 104 FKNILLSGTWRLF-LLVLSIVASFIGIVFVTLSMV 137 (187)
Q Consensus 104 ~~~~~~~~~~lR~-gmL~sa~GSv~Gc~FLmLSMV 137 (187)
....|++....|+ |+.+..+|.++-++-||+++.
T Consensus 88 a~~~n~~Ld~c~laG~~L~~lGg~lla~~Ll~s~~ 122 (140)
T PF14927_consen 88 AARFNNALDTCKLAGLILLCLGGILLAVCLLVSIW 122 (140)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455655445555 888888899988888888875
No 3
>PF02038 ATP1G1_PLM_MAT8: ATP1G1/PLM/MAT8 family; InterPro: IPR000272 The FXYD protein family contains at least seven members in mammals []. Two other family members that are not obvious orthologs of any identified mammalian FXYD protein exist in zebrafish. All these proteins share a signature sequence of six conserved amino acids comprising the FXYD motif in the NH2-terminus, and two glycines and one serine residue in the transmembrane domain. FXYD proteins are widely distributed in mammalian tissues with prominent expression in tissues that perform fluid and solute transport or that are electrically excitable. Initial functional characterisation suggested that FXYD proteins act as channels or as modulators of ion channels however studies have revealed that most FXYD proteins have another specific function and act as tissue-specific regulatory subunits of the Na,K-ATPase. Each of these auxiliary subunits produces a distinct functional effect on the transport characteristics of the Na,K-ATPase that is adjusted to the specific functional demands of the tissue in which the FXYD protein is expressed. FXYD proteins appear to preferentially associate with Na,K-ATPase alpha1-beta isozymes, and affect their function in a way that render them operationally complementary or supplementary to coexisting isozymes.; GO: 0005216 ion channel activity, 0006811 ion transport, 0016020 membrane; PDB: 2JO1_A 2JP3_A 2ZXE_G 3A3Y_G 3N23_E 3B8E_H 3KDP_G 3N2F_E.
Probab=21.93 E-value=1.7e+02 Score=20.49 Aligned_cols=20 Identities=20% Similarity=0.184 Sum_probs=14.7
Q ss_pred HHHHH-HHHHHHHHHHHHHHH
Q 035528 112 TWRLF-LLVLSIVASFIGIVF 131 (187)
Q Consensus 112 ~~lR~-gmL~sa~GSv~Gc~F 131 (187)
..||. |+..+++-.++|-+.
T Consensus 12 ~tLrigGLi~A~vlfi~Gi~i 32 (50)
T PF02038_consen 12 ETLRIGGLIFAGVLFILGILI 32 (50)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred hHhhccchHHHHHHHHHHHHH
Confidence 36777 788888888888654
No 4
>PF04306 DUF456: Protein of unknown function (DUF456); InterPro: IPR007403 This is a family of putative membrane proteins.
Probab=21.52 E-value=1.2e+02 Score=24.29 Aligned_cols=20 Identities=10% Similarity=0.198 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 035528 113 WRLFLLVLSIVASFIGIVFV 132 (187)
Q Consensus 113 ~lR~gmL~sa~GSv~Gc~FL 132 (187)
.-|.++..|.+|.+.|.+++
T Consensus 60 ~s~~~~~ga~iG~IvG~f~~ 79 (140)
T PF04306_consen 60 ASRWGIWGAIIGGIVGFFVL 79 (140)
T ss_pred CCHHHHHHHHHHHHHHHHHh
Confidence 45667889999999988875
No 5
>COG5567 Predicted small periplasmic lipoprotein [Cell motility and secretion]
Probab=19.04 E-value=1e+02 Score=22.21 Aligned_cols=18 Identities=28% Similarity=0.132 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035528 113 WRLFLLVLSIVASFIGIV 130 (187)
Q Consensus 113 ~lR~gmL~sa~GSv~Gc~ 130 (187)
++|.+|++..+.|+.||+
T Consensus 4 ~~~s~~ala~l~sLA~CG 21 (58)
T COG5567 4 VFKSLLALATLFSLAGCG 21 (58)
T ss_pred HHHHHHHHHHHHHHHhcc
Confidence 677788888888999996
No 6
>COG1963 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=18.71 E-value=5.8e+02 Score=21.59 Aligned_cols=109 Identities=20% Similarity=0.128 Sum_probs=64.1
Q ss_pred hhhHhHhHHHHHHHHHHhhhhccccchhhh--hhhhhccCCcchhhhh--HHHHHHHH-HHHHHH---HHHHHHHHHHHH
Q 035528 65 SFACFLMSSLCSKSLKVLINLKKIKRKIKL--KRIQKLEGPFKNILLS--GTWRLFLL-VLSIVA---SFIGIVFVTLSM 136 (187)
Q Consensus 65 SFs~FLfSSLVA~gLKl~i~l~~~~~~~~~--~~~~~~e~~~~~~~~~--~~~lR~gm-L~sa~G---Sv~Gc~FLmLSM 136 (187)
.|-.=+.|.+.||.+|..|.+.++++.+-. ..+ -.| +-.|+ -.+|-.+. +-.++. ...-++|..+-|
T Consensus 12 ~llsal~a~~~AQvIKv~I~~~~~rk~~~~~~~sT---GGM--PSsHSA~VtALat~ial~~G~dS~lFaiA~vfaiIvm 86 (153)
T COG1963 12 PLLSALVAILLAQVIKVLIELIRTRKLNVTLLFST---GGM--PSSHSALVTALATSIALTEGLDSPLFAIAAVFAIIVM 86 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccccceeeeec---CCC--CchHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Confidence 344557788999999999988777653311 111 122 33344 11111111 011111 245688999999
Q ss_pred HhhhhhheeeeecCCcce------------------------eehhhhhHHhhhhHhHHHHhHHHHHHHh
Q 035528 137 VNVIQVKVGKLSCGSVYA------------------------LTSVASLCGIVLLSLLLYAPSMVFAVIA 182 (187)
Q Consensus 137 VnvIqIKLG~LsCgs~~a------------------------~~AvvpLvvLV~~aL~iyv~~v~YAf~~ 182 (187)
.|..-+|=-. +..+ +..=-|+-+++-+++-|.+.-.+|++.+
T Consensus 87 ~DA~GVRr~a----G~QA~iLN~l~~~~~~e~~~~~~~~lKellGH~p~eV~~G~~lGI~i~~i~~~~~~ 152 (153)
T COG1963 87 YDATGVRRSA----GVQARILNQLIEELVNEKKDFDKKRLKELLGHTPLEVFAGLLLGILIAWIFYAFFM 152 (153)
T ss_pred hhhhhHHHhc----cchHHHHHHHHHHHHHhhccCCHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998887110 0011 1112488999999999999999998864
No 7
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=18.55 E-value=1.4e+02 Score=23.94 Aligned_cols=8 Identities=13% Similarity=0.434 Sum_probs=3.1
Q ss_pred HHHHHHHH
Q 035528 124 ASFIGIVF 131 (187)
Q Consensus 124 GSv~Gc~F 131 (187)
+++.|.+|
T Consensus 21 ~gI~~Lv~ 28 (191)
T PF04156_consen 21 SGIAALVL 28 (191)
T ss_pred HHHHHHHH
Confidence 33334333
No 8
>PF02681 DUF212: Divergent PAP2 family; InterPro: IPR003832 This family is related to the acid phosphatase/vanadium-dependent haloperoxidases; members of this group are uncharacterised.
Probab=17.60 E-value=3.5e+02 Score=22.25 Aligned_cols=23 Identities=26% Similarity=0.301 Sum_probs=19.4
Q ss_pred HhHHHHHHHHHHhhhhccccchh
Q 035528 70 LMSSLCSKSLKVLINLKKIKRKI 92 (187)
Q Consensus 70 LfSSLVA~gLKl~i~l~~~~~~~ 92 (187)
++|-++||.+|..++..+.++.+
T Consensus 11 ~~a~~~AQ~iK~~~~~~~~r~~d 33 (141)
T PF02681_consen 11 LIAWFIAQFIKVFINYLKERKWD 33 (141)
T ss_pred HHHHHHHHHHHHHHHHHHhCccc
Confidence 57888999999999998887654
No 9
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=17.07 E-value=34 Score=24.73 Aligned_cols=32 Identities=31% Similarity=0.474 Sum_probs=24.4
Q ss_pred CCCCCcccccceeEEeeehhhHhHhHHHHHHH
Q 035528 47 ECDPDVSVGKRLILYEVISFACFLMSSLCSKS 78 (187)
Q Consensus 47 ~C~~~~~ia~~Lv~FeV~SFs~FLfSSLVA~g 78 (187)
.|+.+++-..-+++.-++||-||+.++|--|+
T Consensus 5 rc~~~p~d~~~~lLiliis~~f~lI~~l~qq~ 36 (61)
T PF06692_consen 5 RCDSAPGDYSGPLLILIISFVFFLITSLGQQG 36 (61)
T ss_pred ccCCCCccchhHHHHHHHHHHHHHHhhhccCC
Confidence 47777766666666778999999999986665
No 10
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=17.04 E-value=4.5e+02 Score=23.61 Aligned_cols=65 Identities=9% Similarity=-0.069 Sum_probs=34.6
Q ss_pred hhhHhHhHHHHHHHHHHhhhhcccc-chhhhhhhhhccCCc---chhhhhHHHHHHHHHHHHHHHHHHHHHH
Q 035528 65 SFACFLMSSLCSKSLKVLINLKKIK-RKIKLKRIQKLEGPF---KNILLSGTWRLFLLVLSIVASFIGIVFV 132 (187)
Q Consensus 65 SFs~FLfSSLVA~gLKl~i~l~~~~-~~~~~~~~~~~e~~~---~~~~~~~~~lR~gmL~sa~GSv~Gc~FL 132 (187)
++.-|+..-+.+..+..+.|+.|+= |.. ...|+ |+.. +...+.+..+++++...+++.+.|..+.
T Consensus 46 ~~~~~ll~ll~~~l~q~~~N~~NDy~D~~--~G~D~-~~~~~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~ 114 (304)
T PRK07419 46 RLDQFITFLLAAILILAWENLSNDVFDAD--TGIDK-NKFHSVVNLTGNKSLVFWLANLFLLLGLLGILAIA 114 (304)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHh--ccCCc-ccccCcccccCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555566666551 211 01111 1111 1111235588899999999988888664
Done!