Query 035528
Match_columns 187
No_of_seqs 59 out of 61
Neff 3.7
Searched_HMMs 29240
Date Mon Mar 25 05:36:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035528.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035528hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2kix_A BM2 protein; channel, t 19.2 23 0.0008 21.7 -0.0 16 61-76 5-20 (33)
2 1waz_A MERF; protein structure 18.2 75 0.0026 21.0 2.3 18 167-184 26-43 (46)
3 2jp3_A FXYD domain-containing 15.9 2.4E+02 0.0083 19.8 4.6 21 112-132 15-36 (67)
4 2k42_B Espfu; WAsp, GBD, autoi 14.5 69 0.0024 20.2 1.3 11 75-85 7-17 (36)
5 4hkr_A Calcium release-activat 11.6 2.3E+02 0.0078 23.9 4.1 56 113-173 108-163 (214)
6 2kxc_B ESPF-like protein; IRTK 10.8 99 0.0034 20.6 1.3 11 75-85 5-15 (48)
7 2qts_A Acid-sensing ION channe 8.9 2.3E+02 0.0079 24.2 3.3 25 117-142 403-427 (438)
8 2jo1_A Phospholemman; FXYD1, N 7.6 4.1E+02 0.014 18.9 3.5 20 113-132 15-35 (72)
9 2lif_A Core protein P21; signa 10.2 90 0.0031 18.5 0.0 11 65-75 5-15 (27)
10 3n2f_G Na+/K+ ATPase gamma sub 7.3 1.7E+02 0.0059 17.6 1.2 20 113-132 9-29 (31)
No 1
>2kix_A BM2 protein; channel, transport protein; NMR {Influenza b virus}
Probab=19.15 E-value=23 Score=21.71 Aligned_cols=16 Identities=25% Similarity=0.685 Sum_probs=13.0
Q ss_pred EeeehhhHhHhHHHHH
Q 035528 61 YEVISFACFLMSSLCS 76 (187)
Q Consensus 61 FeV~SFs~FLfSSLVA 76 (187)
|+++|-++|.+|.|=-
T Consensus 5 ~qilsi~sfilsalhf 20 (33)
T 2kix_A 5 FQILSISSFILSALHF 20 (33)
T ss_dssp THHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 5788999999998743
No 2
>1waz_A MERF; protein structure, residual dipolar coupling, polytopic membrane protein, transport protein, antibiotic resistance; NMR {Morganella morganii}
Probab=18.21 E-value=75 Score=20.98 Aligned_cols=18 Identities=11% Similarity=0.281 Sum_probs=15.2
Q ss_pred hHhHHHHhHHHHHHHhhc
Q 035528 167 LSLLLYAPSMVFAVIATA 184 (187)
Q Consensus 167 ~aL~iyv~~v~YAf~~~~ 184 (187)
-||.+|+...+||+.+..
T Consensus 26 PaLa~Fi~lt~ya~~r~~ 43 (46)
T 1waz_A 26 PALAIFIGLTIYAIQRKR 43 (46)
T ss_dssp CHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 378999999999999854
No 3
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=15.86 E-value=2.4e+02 Score=19.79 Aligned_cols=21 Identities=14% Similarity=0.146 Sum_probs=14.1
Q ss_pred HHHHH-HHHHHHHHHHHHHHHH
Q 035528 112 TWRLF-LLVLSIVASFIGIVFV 132 (187)
Q Consensus 112 ~~lR~-gmL~sa~GSv~Gc~FL 132 (187)
..||. |+..+++-.++|.+.+
T Consensus 15 ~tLRigGLifA~vLfi~GI~ii 36 (67)
T 2jp3_A 15 ESLQLGGLIFGGLLCIAGIALA 36 (67)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHheecchhhHHHHHHHHHHHH
Confidence 36777 6777777777776554
No 4
>2k42_B Espfu; WAsp, GBD, autoinhibition, cytoplasm, cytoskeleton, disease mutation, phosphoprotein, signaling protein; NMR {Escherichia coli O157}
Probab=14.47 E-value=69 Score=20.18 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=9.4
Q ss_pred HHHHHHHhhhh
Q 035528 75 CSKSLKVLINL 85 (187)
Q Consensus 75 VA~gLKl~i~l 85 (187)
|||+||+++--
T Consensus 7 IAQaLk~HLAa 17 (36)
T 2k42_B 7 VAQRLMQHLAE 17 (36)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHHH
Confidence 79999999864
No 5
>4hkr_A Calcium release-activated calcium channel protein; ORAI1, eukaryotic membrane protein, membran protein, ION channel, STIM, membrane; 3.35A {Drosophila melanogaster} PDB: 4hks_A
Probab=11.65 E-value=2.3e+02 Score=23.94 Aligned_cols=56 Identities=14% Similarity=0.230 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhhheeeeecCCcceeehhhhhHHhhhhHhHHHH
Q 035528 113 WRLFLLVLSIVASFIGIVFVTLSMVNVIQVKVGKLSCGSVYALTSVASLCGIVLLSLLLYA 173 (187)
Q Consensus 113 ~lR~gmL~sa~GSv~Gc~FLmLSMVnvIqIKLG~LsCgs~~a~~AvvpLvvLV~~aL~iyv 173 (187)
..++-=++=++..++|.+.+|.-++-+.=||+-..+= +.+|. .-++++|..+++-+
T Consensus 108 ~~~yIE~AW~fST~lGi~LFL~evall~WVKF~~~~~--~aa~~---~t~vliPv~i~F~~ 163 (214)
T 4hkr_A 108 LHWYIETAWAFSTLLGLILFLLEIAILCWVKFYDLSR--RAAWS---ATVVLIPVMIIFMA 163 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCH--HHHHH---HHHHTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhheEEeecCCc--HHHHH---HHHHHHHHHHHHHH
Confidence 4455555666778999999999999999899887542 23333 34666666655433
No 6
>2kxc_B ESPF-like protein; IRTKS-SH3, espfu, complex structure, protein binding; NMR {Escherichia coli}
Probab=10.85 E-value=99 Score=20.57 Aligned_cols=11 Identities=9% Similarity=0.042 Sum_probs=9.3
Q ss_pred HHHHHHHhhhh
Q 035528 75 CSKSLKVLINL 85 (187)
Q Consensus 75 VA~gLKl~i~l 85 (187)
|||+||+++--
T Consensus 5 iaQaLk~HLAA 15 (48)
T 2kxc_B 5 VAQRLMQHLAE 15 (48)
T ss_pred HHHHHHHHHHH
Confidence 79999999864
No 7
>2qts_A Acid-sensing ION channel; trimer, membrane protein; HET: MAL NAG; 1.90A {Gallus gallus} PDB: 3hgc_A 3ij4_A
Probab=8.94 E-value=2.3e+02 Score=24.18 Aligned_cols=25 Identities=20% Similarity=0.449 Sum_probs=18.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhh
Q 035528 117 LLVLSIVASFIGIVFVTLSMVNVIQV 142 (187)
Q Consensus 117 gmL~sa~GSv~Gc~FLmLSMVnvIqI 142 (187)
.-|+|-+|.++| .|+=.|++-++||
T Consensus 403 ~~lls~~GG~~G-LflG~S~ls~~Ei 427 (438)
T 2qts_A 403 AGLLGDIGGQMG-LFIGASILTVLEL 427 (438)
T ss_dssp HHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHhHHH-HHhcchHHHHHHH
Confidence 457788888887 5666777777775
No 8
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=7.55 E-value=4.1e+02 Score=18.90 Aligned_cols=20 Identities=25% Similarity=0.268 Sum_probs=13.7
Q ss_pred HHHH-HHHHHHHHHHHHHHHH
Q 035528 113 WRLF-LLVLSIVASFIGIVFV 132 (187)
Q Consensus 113 ~lR~-gmL~sa~GSv~Gc~FL 132 (187)
.||. ||..+++-.++|.+.+
T Consensus 15 tLRiGGLifA~vLfi~GI~ii 35 (72)
T 2jo1_A 15 SLQIGGLVIAGILFILGILIV 35 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhccchHHHHHHHHHHHHHH
Confidence 6777 6777777777775544
No 9
>2lif_A Core protein P21; signal peptide, E1 envelope protein, transmemb membrane protein, viral protein; NMR {Hepatitis c virus jfh-1}
Probab=10.18 E-value=90 Score=18.47 Aligned_cols=11 Identities=36% Similarity=0.736 Sum_probs=8.0
Q ss_pred hhhHhHhHHHH
Q 035528 65 SFACFLMSSLC 75 (187)
Q Consensus 65 SFs~FLfSSLV 75 (187)
|||.||++-+-
T Consensus 5 sfsiFlLaLls 15 (27)
T 2lif_A 5 PFSIFLLALLS 15 (27)
Confidence 78888877653
No 10
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=7.30 E-value=1.7e+02 Score=17.58 Aligned_cols=20 Identities=15% Similarity=0.273 Sum_probs=13.8
Q ss_pred HHHH-HHHHHHHHHHHHHHHH
Q 035528 113 WRLF-LLVLSIVASFIGIVFV 132 (187)
Q Consensus 113 ~lR~-gmL~sa~GSv~Gc~FL 132 (187)
.||. |+..+++-.++|-..+
T Consensus 9 tLrigGLi~a~vLfi~gi~ii 29 (31)
T 3n2f_G 9 TVRNGGLIFAALAFIVGLIII 29 (31)
T ss_dssp HHHHHHTTTHHHHHHHHHHHH
T ss_pred HHhhcchhHHHHHHHHHHHHh
Confidence 5666 6777777777776544
Done!