Query 035528
Match_columns 187
No_of_seqs 59 out of 61
Neff 3.7
Searched_HMMs 13730
Date Mon Mar 25 05:36:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035528.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035528hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d3buxb2 a.48.1.1 (B:48-177) N- 9.5 1.9E+02 0.014 20.9 4.5 19 69-88 70-88 (130)
2 d2axtm1 f.23.35.1 (M:1-36) Pho 7.8 1.1E+02 0.0082 17.7 2.1 11 160-170 12-22 (36)
3 d1j5pa4 c.2.1.3 (A:-1-108,A:22 7.2 46 0.0034 22.4 0.1 11 141-151 2-12 (132)
4 d1uspa_ d.227.1.1 (A:) Organic 7.0 1.6E+02 0.011 19.2 2.9 18 118-135 47-64 (137)
5 d1kqfb2 f.23.22.1 (B:246-290) 6.6 1.7E+02 0.012 17.5 2.6 20 165-184 13-32 (45)
6 d2onfa1 d.227.1.1 (A:1-139) Hy 6.2 1.8E+02 0.013 19.1 2.9 21 118-138 45-65 (139)
7 d1b3ta_ d.58.8.1 (A:) Epstein 6.2 94 0.0069 22.9 1.4 23 62-84 98-120 (147)
8 d1v54l_ f.23.6.1 (L:) Mitochon 6.2 2.9E+02 0.021 16.5 3.6 24 111-134 16-39 (46)
9 d2d7va1 d.227.1.1 (A:7-161) Hy 5.2 2.2E+02 0.016 19.3 2.9 21 118-138 62-82 (155)
10 d1vlaa_ d.227.1.2 (A:) Hypothe 5.2 2.2E+02 0.016 18.6 2.9 19 118-136 47-65 (144)
No 1
>d3buxb2 a.48.1.1 (B:48-177) N-terminal domain of cbl (N-cbl) {Human (Homo sapiens) [TaxId: 9606]}
Probab=9.51 E-value=1.9e+02 Score=20.87 Aligned_cols=19 Identities=37% Similarity=0.385 Sum_probs=15.3
Q ss_pred hHhHHHHHHHHHHhhhhccc
Q 035528 69 FLMSSLCSKSLKVLINLKKI 88 (187)
Q Consensus 69 FLfSSLVA~gLKl~i~l~~~ 88 (187)
.-+..|.++| ||+++|.+.
T Consensus 70 iyl~nL~~K~-kq~i~LFK~ 88 (130)
T d3buxb2 70 VFMENLMKKT-KQTISLFKE 88 (130)
T ss_dssp HHHHHHHHHH-HHHHHHHHH
T ss_pred HHHHHHHHHH-HHHHHHHHh
Confidence 3468899998 999999854
No 2
>d2axtm1 f.23.35.1 (M:1-36) Photosystem II reaction center protein M, PsbM {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=7.82 E-value=1.1e+02 Score=17.67 Aligned_cols=11 Identities=27% Similarity=0.238 Sum_probs=6.0
Q ss_pred hhHHhhhhHhH
Q 035528 160 SLCGIVLLSLL 170 (187)
Q Consensus 160 pLvvLV~~aL~ 170 (187)
.|+++||++.+
T Consensus 12 ~LFilvPt~FL 22 (36)
T d2axtm1 12 ALFVLVPSVFL 22 (36)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 45556665543
No 3
>d1j5pa4 c.2.1.3 (A:-1-108,A:220-241) Hypothetical protein TM1643 {Thermotoga maritima [TaxId: 2336]}
Probab=7.22 E-value=46 Score=22.41 Aligned_cols=11 Identities=18% Similarity=0.292 Sum_probs=9.4
Q ss_pred hhheeeeecCC
Q 035528 141 QVKVGKLSCGS 151 (187)
Q Consensus 141 qIKLG~LsCgs 151 (187)
|||+|.++||+
T Consensus 2 ~mkV~iiG~G~ 12 (132)
T d1j5pa4 2 HMTVLIIGMGN 12 (132)
T ss_dssp CCEEEEECCSH
T ss_pred CCEEEEECCCH
Confidence 68999999986
No 4
>d1uspa_ d.227.1.1 (A:) Organic hydroperoxide resistance protein Ohr {Deinococcus radiodurans [TaxId: 1299]}
Probab=6.98 E-value=1.6e+02 Score=19.25 Aligned_cols=18 Identities=17% Similarity=-0.009 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 035528 118 LVLSIVASFIGIVFVTLS 135 (187)
Q Consensus 118 mL~sa~GSv~Gc~FLmLS 135 (187)
||++|+||.++..+.+.+
T Consensus 47 lllaAlasC~~~t~~~~a 64 (137)
T d1uspa_ 47 LFAAGYAACFQGALGVVS 64 (137)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 888888887776665543
No 5
>d1kqfb2 f.23.22.1 (B:246-290) Iron-sulfur subunit of formate dehydrogenase N, transmembrane anchor {Escherichia coli [TaxId: 562]}
Probab=6.56 E-value=1.7e+02 Score=17.51 Aligned_cols=20 Identities=5% Similarity=-0.059 Sum_probs=15.7
Q ss_pred hhhHhHHHHhHHHHHHHhhc
Q 035528 165 VLLSLLLYAPSMVFAVIATA 184 (187)
Q Consensus 165 V~~aL~iyv~~v~YAf~~~~ 184 (187)
=|+|++-+..+++-.+.||.
T Consensus 13 Kpl~~~~~~~~~~~~~fHYv 32 (45)
T d1kqfb2 13 KPLAAAGFIATFAGLIFHYI 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhh
Confidence 36777778888888888885
No 6
>d2onfa1 d.227.1.1 (A:1-139) Hypothetical protein Ta0195 {Thermoplasma acidophilum [TaxId: 2303]}
Probab=6.25 E-value=1.8e+02 Score=19.09 Aligned_cols=21 Identities=24% Similarity=0.225 Sum_probs=16.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035528 118 LVLSIVASFIGIVFVTLSMVN 138 (187)
Q Consensus 118 mL~sa~GSv~Gc~FLmLSMVn 138 (187)
+|++|+||.++..+.+.+=-.
T Consensus 45 lllaala~C~~~~~~~~a~~~ 65 (139)
T d2onfa1 45 LFPSVLASCLLTTFLEFKDRM 65 (139)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 888999988888877766544
No 7
>d1b3ta_ d.58.8.1 (A:) Epstein barr virus nuclear antigen-1 (ebna1) {Epstein-Barr virus [TaxId: 10376]}
Probab=6.20 E-value=94 Score=22.87 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.4
Q ss_pred eeehhhHhHhHHHHHHHHHHhhh
Q 035528 62 EVISFACFLMSSLCSKSLKVLIN 84 (187)
Q Consensus 62 eV~SFs~FLfSSLVA~gLKl~i~ 84 (187)
-+.-|-.||=.++.|.++|.||+
T Consensus 98 ~~~yFlvFlqt~~fAe~~kDAi~ 120 (147)
T d1b3ta_ 98 IVCYFMVFLQTHIFAEVLKDAIK 120 (147)
T ss_dssp EEEEEEEEESCHHHHHHHHHHHH
T ss_pred eeeeeeeeeehhHHHHHHHHHHH
Confidence 34557779999999999999996
No 8
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.15 E-value=2.9e+02 Score=16.52 Aligned_cols=24 Identities=21% Similarity=0.432 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 035528 111 GTWRLFLLVLSIVASFIGIVFVTL 134 (187)
Q Consensus 111 ~~~lR~gmL~sa~GSv~Gc~FLmL 134 (187)
.|++-..|.....||-+|.=|+++
T Consensus 16 Nk~rLla~m~~~fGsgfa~PF~iv 39 (46)
T d1v54l_ 16 NKWRLLAMMTLFFGSGFAAPFFIV 39 (46)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccchHHHH
Confidence 346667888889999999999875
No 9
>d2d7va1 d.227.1.1 (A:7-161) Hypothetical protein VCA0330 {Vibrio cholerae [TaxId: 666]}
Probab=5.20 E-value=2.2e+02 Score=19.32 Aligned_cols=21 Identities=14% Similarity=0.292 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 035528 118 LVLSIVASFIGIVFVTLSMVN 138 (187)
Q Consensus 118 mL~sa~GSv~Gc~FLmLSMVn 138 (187)
||++|+||..+--|++++=-.
T Consensus 62 LllaAlasC~~~t~~~~a~~~ 82 (155)
T d2d7va1 62 AFVAALSSCHMLVFLSIAAKQ 82 (155)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 788999888887777666544
No 10
>d1vlaa_ d.227.1.2 (A:) Hypothetical protein TM0919 {Thermotoga maritima [TaxId: 2336]}
Probab=5.20 E-value=2.2e+02 Score=18.60 Aligned_cols=19 Identities=26% Similarity=0.329 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 035528 118 LVLSIVASFIGIVFVTLSM 136 (187)
Q Consensus 118 mL~sa~GSv~Gc~FLmLSM 136 (187)
+|++|+|+.++..+.+++=
T Consensus 47 lllaala~C~~~~~~~~a~ 65 (144)
T d1vlaa_ 47 LVLTGLMGCTGMDVVSILR 65 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 7888888887777766653
Done!