BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035532
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IMA|B Chain B, Complex Strcuture Of Tarocystatin And Papain
pdb|3IMA|D Chain D, Complex Strcuture Of Tarocystatin And Papain
Length = 91
Score = 50.1 bits (118), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 47/74 (63%), Gaps = 11/74 (14%)
Query: 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
L+GG +V+ + + EV+EL +F+V+E N+ + L+FS++++A++QVV
Sbjct: 2 LMGGIVDVEGAQNSAEVEELARFAVDEHNKKEN-----------ALLQFSRLVKAKQQVV 50
Query: 87 SGIKYYLTIEATTG 100
SGI ++LT+E G
Sbjct: 51 SGIMHHLTVEVIEG 64
>pdb|2W9P|A Chain A, Crystal Structure Of Potato Multicystatin
pdb|2W9P|B Chain B, Crystal Structure Of Potato Multicystatin
pdb|2W9P|C Chain C, Crystal Structure Of Potato Multicystatin
pdb|2W9P|D Chain D, Crystal Structure Of Potato Multicystatin
pdb|2W9P|E Chain E, Crystal Structure Of Potato Multicystatin
pdb|2W9P|F Chain F, Crystal Structure Of Potato Multicystatin
pdb|2W9P|G Chain G, Crystal Structure Of Potato Multicystatin
pdb|2W9P|H Chain H, Crystal Structure Of Potato Multicystatin
pdb|2W9P|I Chain I, Crystal Structure Of Potato Multicystatin
pdb|2W9P|J Chain J, Crystal Structure Of Potato Multicystatin
pdb|2W9P|K Chain K, Crystal Structure Of Potato Multicystatin
pdb|2W9P|L Chain L, Crystal Structure Of Potato Multicystatin
pdb|2W9P|M Chain M, Crystal Structure Of Potato Multicystatin
pdb|2W9P|N Chain N, Crystal Structure Of Potato Multicystatin
pdb|2W9Q|A Chain A, Crystal Structure Of Potato Multicystatin-P212121
Length = 87
Score = 42.4 bits (98), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 34/59 (57%), Gaps = 11/59 (18%)
Query: 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEAT 98
N + QEL +F+++++N+ Q L F + L ++QVV+GI YY+T+ AT
Sbjct: 10 NTKFQELARFAIQDYNKKQN-----------AHLEFVENLNVKEQVVAGIMYYITLAAT 57
>pdb|2L4V|A Chain A, Three Dimensional Structure Of Pineapple Cystatin
Length = 135
Score = 36.2 bits (82), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%), Gaps = 11/57 (19%)
Query: 44 QELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG 100
++L +F+V E+N +N A L F +V++A++QVVSG+ +YLT+E
Sbjct: 60 EDLARFAVREYNN---------KNNAL--LEFVRVVKAKEQVVSGMMHYLTVEVNDA 105
>pdb|1EQK|A Chain A, Solution Structure Of Oryzacystatin-I, A Cysteine
Proteinase Inhibitor Of The Rice, Oryza Sativa L.
Japonica
Length = 102
Score = 32.7 bits (73), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 11/57 (19%)
Query: 45 ELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGE 101
+L +F+V E N+ A L F +++ ++QVV+G YY TIE G+
Sbjct: 25 DLARFAVTEHNKK-----------ANSLLEFEKLVSVKQQVVAGTLYYFTIEVKEGD 70
>pdb|1YVB|I Chain I, The Plasmodium Falciparum Cysteine Protease Falcipain-2
Length = 111
Score = 32.3 bits (72), Expect = 0.072, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 15/73 (20%)
Query: 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQ--QRQGKVIRNVAFGRLRFSQVLEAQK 83
RL+G V + ++ +Q +F++ E+NR+ + +V+R V+ A++
Sbjct: 1 RLLGAPVPVDE--NDEGLQRALQFAMAEYNRASNDKYSSRVVR-----------VISAKR 47
Query: 84 QVVSGIKYYLTIE 96
Q+VSGIKY L +E
Sbjct: 48 QLVSGIKYILQVE 60
>pdb|3GAX|A Chain A, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
pdb|3GAX|B Chain B, Crystal Structure Of Monomeric Human Cystatin C
Stabilized A Aggregation
Length = 120
Score = 32.3 bits (72), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRACQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+V+G+ Y+L +E
Sbjct: 52 ARKQIVAGVNYFLDVE 67
>pdb|1A90|A Chain A, Recombinant Mutant Chicken Egg White Cystatin, Nmr, 31
Structures
Length = 108
Score = 31.6 bits (70), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 14/63 (22%)
Query: 37 VKKNKE-VQELGKFSVEEFNRS--QQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYL 93
V +N E +Q +F++ E+NR+ + +V+R V+ A++Q+VSGIKY L
Sbjct: 6 VDENDEGLQRALQFAIAEYNRASNDKYSSRVVR-----------VISAKRQLVSGIKYIL 54
Query: 94 TIE 96
+E
Sbjct: 55 QVE 57
>pdb|1CEW|I Chain I, The 2.0 Angstroms X-Ray Crystal Structure Of Chicken Egg
White Cystatin And Its Possible Mode Of Interaction
With Cysteine Proteinases
pdb|1A67|A Chain A, Chicken Egg White Cystatin Wildtype, Nmr, 16 Structures
Length = 108
Score = 30.8 bits (68), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 36/63 (57%), Gaps = 14/63 (22%)
Query: 37 VKKNKE-VQELGKFSVEEFNRSQQRQ--GKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYL 93
V +N E +Q +F++ E+NR+ + +V+R V+ A++Q+VSGIKY L
Sbjct: 6 VDENDEGLQRALQFAMAEYNRASNDKYSSRVVR-----------VISAKRQLVSGIKYIL 54
Query: 94 TIE 96
+E
Sbjct: 55 QVE 57
>pdb|3PS8|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|A Chain A, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|B Chain B, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|C Chain C, Crystal Structure Of L68v Mutant Of Human Cystatin C
pdb|3QRD|D Chain D, Crystal Structure Of L68v Mutant Of Human Cystatin C
Length = 120
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRALQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+V+G+ Y+L +E
Sbjct: 52 ARKQIVAGVNYFLDVE 67
>pdb|1G96|A Chain A, Human Cystatin C; Dimeric Form With 3d Domain Swapping
pdb|1TIJ|A Chain A, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
pdb|1TIJ|B Chain B, 3d Domain-Swapped Human Cystatin C With Amyloid-Like
Intermolecular Beta-Sheets
Length = 120
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRALQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+V+G+ Y+L +E
Sbjct: 52 ARKQIVAGVNYFLDVE 67
>pdb|1RN7|A Chain A, Structure Of Human Cystatin D
pdb|1ROA|A Chain A, Structure Of Human Cystatin D
Length = 122
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 9/77 (11%)
Query: 20 SVNGYDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVL 79
S + R + G D+ +K VQ F++ E+N KVI + R QV+
Sbjct: 2 SASAQSRTLAGGIHATDLN-DKSVQRALDFAISEYN-------KVINKDEYYS-RPLQVM 52
Query: 80 EAQKQVVSGIKYYLTIE 96
A +Q+V G+ YY ++
Sbjct: 53 AAYQQIVGGVNYYFNVK 69
>pdb|3LI7|A Chain A, Crystal Structure Of Sialostatin L
pdb|3LI7|B Chain B, Crystal Structure Of Sialostatin L
pdb|3LI7|C Chain C, Crystal Structure Of Sialostatin L
pdb|3LI7|D Chain D, Crystal Structure Of Sialostatin L
Length = 115
Score = 29.3 bits (64), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG 88
GG SE + + N E L ++ + S Q+ GK + ++V++ + QVV+G
Sbjct: 6 GGYSERANHQANPEFLNLAHYATSTW--SAQQPGKTHFDTV------AEVVKVETQVVAG 57
Query: 89 IKYYLTI 95
Y LT+
Sbjct: 58 TNYRLTL 64
>pdb|1IQ0|A Chain A, Thermus Thermophilus Arginyl-Trna Synthetase
Length = 592
Score = 28.9 bits (63), Expect = 0.66, Method: Composition-based stats.
Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 41 KEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQV-LEAQKQVVSGIKYYLTIEATT 99
+E + VEE N + + R VA G +RFS V E +KQ+ + L+ E T
Sbjct: 410 EEATRRARAIVEEKNPDHPDKEEAARMVALGAIRFSMVKTEPKKQIDFRYQEALSFEGDT 469
Query: 100 G 100
G
Sbjct: 470 G 470
>pdb|1R4C|A Chain A, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|B Chain B, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|C Chain C, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|D Chain D, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|E Chain E, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|F Chain F, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|G Chain G, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
pdb|1R4C|H Chain H, N-Truncated Human Cystatin C; Dimeric Form With 3d
Domain Swapping
Length = 110
Score = 28.9 bits (63), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 11/23 (47%), Positives = 18/23 (78%)
Query: 74 RFSQVLEAQKQVVSGIKYYLTIE 96
R QV+ A+KQ+V+G+ Y+L +E
Sbjct: 35 RALQVVRARKQIVAGVNYFLDVE 57
>pdb|3S67|A Chain A, Crystal Structure Of V57p Mutant Of Human Cystatin C
Length = 120
Score = 28.9 bits (63), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRALQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+ +G+ Y+L +E
Sbjct: 52 ARKQIPAGVNYFLDVE 67
>pdb|3GG2|A Chain A, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|B Chain B, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|C Chain C, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
pdb|3GG2|D Chain D, Crystal Structure Of Udp-Glucose 6-Dehydrogenase From
Porphyromonas Gingivalis Bound To Product
Udp-Glucuronate
Length = 450
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/80 (23%), Positives = 36/80 (45%), Gaps = 5/80 (6%)
Query: 28 VGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS 87
+G D +NK +++L ++ + ++ + RNV GRLRF E ++ V
Sbjct: 24 LGANVRCIDTDRNK-IEQLNSGTIPIYEPGLEKM--IARNVKAGRLRFGT--EIEQAVPE 78
Query: 88 GIKYYLTIEATTGENGEIQM 107
++ + GE+G M
Sbjct: 79 ADIIFIAVGTPAGEDGSADM 98
>pdb|3SVA|A Chain A, Crystal Structure Of V57d Mutant Of Human Cystatin C
Length = 120
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRALQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+ +G+ Y+L +E
Sbjct: 52 ARKQIDAGVNYFLDVE 67
>pdb|2CH9|A Chain A, Crystal Structure Of Dimeric Human Cystatin F
Length = 131
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 13/80 (16%)
Query: 35 KDVKKNKE-VQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYL 93
K +K N V + ++SVE+FN N F + S++ A Q+V G+KY L
Sbjct: 21 KTIKTNDPGVLQAARYSVEKFNNCT--------NDMF-LFKESRITRALVQIVKGLKYML 71
Query: 94 TIE---ATTGENGEIQMFDS 110
+E T +N +++ D
Sbjct: 72 EVEIGRTTCKKNQHLRLDDC 91
>pdb|3NX0|A Chain A, Hinge-Loop Mutation Can Be Used To Control 3d Domain
Swapping And Amyloidogenesis Of Human Cystatin C
pdb|3NX0|B Chain B, Hinge-Loop Mutation Can Be Used To Control 3d Domain
Swapping And Amyloidogenesis Of Human Cystatin C
Length = 120
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 35/76 (46%), Gaps = 21/76 (27%)
Query: 26 RLVGGRSEVKDVKKNKEVQELG-----KFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80
RLVGG + V+E G F+V E+N++ R QV+
Sbjct: 8 RLVGG-------PMDASVEEEGVRRALDFAVGEYNKASND---------MYHSRALQVVR 51
Query: 81 AQKQVVSGIKYYLTIE 96
A+KQ+ +G+ Y+L +E
Sbjct: 52 ARKQINAGVNYFLDVE 67
>pdb|1N9J|A Chain A, Solution Structure Of The 3d Domain Swapped Dimer Of
Stefin A
pdb|1N9J|B Chain B, Solution Structure Of The 3d Domain Swapped Dimer Of
Stefin A
pdb|1NB3|I Chain I, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|J Chain J, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|K Chain K, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB3|L Chain L, Crystal Structure Of Stefin A In Complex With Cathepsin H:
N-Terminal Residues Of Inhibitors Can Adapt To The
Active Sites Of Endo-And Exopeptidases
pdb|1NB5|I Chain I, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|J Chain J, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|K Chain K, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1NB5|L Chain L, Crystal Structure Of Stefin A In Complex With Cathepsin H
pdb|1DVC|A Chain A, Solution Nmr Structure Of Human Stefin A At Ph 5.5 And
308k, Nmr, Minimized Average Structure
pdb|1DVD|A Chain A, Solution Nmr Structure Of Human Stefin A At Ph 5.5 And
308k, Nmr, 17 Structures
pdb|3K9M|C Chain C, Cathepsin B In Complex With Stefin A
pdb|3K9M|D Chain D, Cathepsin B In Complex With Stefin A
pdb|3KFQ|C Chain C, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KFQ|D Chain D, Unreduced Cathepsin V In Complex With Stefin A
pdb|3KSE|D Chain D, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|E Chain E, Unreduced Cathepsin L In Complex With Stefin A
pdb|3KSE|F Chain F, Unreduced Cathepsin L In Complex With Stefin A
Length = 98
Score = 25.8 bits (55), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
+ GG SE K E+QE+ V++ + + N +G+L + ++ + QVV
Sbjct: 2 IPGGLSEAKPA--TPEIQEI----VDKVKPQLEEK----TNETYGKL---EAVQYKTQVV 48
Query: 87 SGIKYYLTIEATTGENGEIQMFDSI 111
+G YY+ + A + +++F S+
Sbjct: 49 AGTNYYIKVRAGDNKYMHLKVFKSL 73
>pdb|3MON|B Chain B, Crystal Structures Of Two Intensely Sweet Proteins
pdb|3MON|D Chain D, Crystal Structures Of Two Intensely Sweet Proteins
pdb|3MON|F Chain F, Crystal Structures Of Two Intensely Sweet Proteins
pdb|3MON|H Chain H, Crystal Structures Of Two Intensely Sweet Proteins
pdb|4MON|B Chain B, Orthorhombic Monellin
pdb|4MON|D Chain D, Orthorhombic Monellin
Length = 50
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVL 79
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 1 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVI 38
>pdb|1KRL|B Chain B, Crystal Structure Of Racemic Dl-Monellin In P-1
pdb|1KRL|D Chain D, Crystal Structure Of Racemic Dl-Monellin In P-1
Length = 50
Score = 25.8 bits (55), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 12/50 (24%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVL 79
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 1 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVI 38
>pdb|1GD3|A Chain A, Refined Solution Structure Of Human Cystatin A
pdb|1CYU|A Chain A, Solution Nmr Structure Of Recombinant Human Cystatin A
Under The Condition Of Ph 3.8 And 310k
pdb|1CYV|A Chain A, Solution Nmr Structure Of Recombinant Human Cystatin A
Under The Condition Of Ph 3.8 And 310k
Length = 98
Score = 25.4 bits (54), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
+ GG SE K E+QE+ V++ + + N +G+L + ++ + QVV
Sbjct: 2 IPGGLSEAKPA--TPEIQEI----VDKVKPQLEEK----TNETYGKL---EAVQYKTQVV 48
Query: 87 SGIKYYLTIEATTGENGEIQMFDSI 111
+G YY+ + A + +++F S+
Sbjct: 49 AGTNYYIKVRAGDNKYLHLKVFKSL 73
>pdb|2O9U|X Chain X, Monellin (Mnei) At 1.15 Resolution
Length = 97
Score = 25.4 bits (54), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA 81
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 2 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRP 41
>pdb|1MOL|A Chain A, Two Crystal Structures Of A Potently Sweet Protein:
Natural Monellin At 2.75 Angstroms Resolution And
Single-Chain Monellin At 1.7 Angstroms Resolution
pdb|1MOL|B Chain B, Two Crystal Structures Of A Potently Sweet Protein:
Natural Monellin At 2.75 Angstroms Resolution And
Single-Chain Monellin At 1.7 Angstroms Resolution
pdb|1MNL|A Chain A, High-Resolution Solution Structure Of A Sweet Protein
Single-Chain Monellin (Scm) Determined By Nuclear
Magnetic Resonance Spectroscopy And Dynamical Simulated
Annealing Calculations, 21 Structures
Length = 94
Score = 25.0 bits (53), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA 81
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 1 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRP 40
>pdb|1IV9|A Chain A, Crystal Structure Of Single Chain Monellin
pdb|1IV9|B Chain B, Crystal Structure Of Single Chain Monellin
Length = 96
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA 81
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 1 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRP 40
>pdb|1IV7|A Chain A, Crystal Structure Of Single Chain Monellin
pdb|1IV7|B Chain B, Crystal Structure Of Single Chain Monellin
pdb|1FA3|A Chain A, Solution Structure Of Mnei, A Sweet Protein
Length = 96
Score = 25.0 bits (53), Expect = 9.7, Method: Compositional matrix adjust.
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 12/52 (23%)
Query: 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA 81
G E+ D+ Q LGKF+V+E N+ Q +GRL F++V+
Sbjct: 1 GEWEIIDI--GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRP 40
>pdb|1GD4|A Chain A, Solution Structure Of P25s Cystatin A
Length = 98
Score = 25.0 bits (53), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 21/85 (24%), Positives = 42/85 (49%), Gaps = 13/85 (15%)
Query: 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV 86
+ GG SE K E+QE+ V++ + + N +G+L + ++ + QVV
Sbjct: 2 IPGGLSEAKPA--TPEIQEI----VDKVKSQLEEK----TNETYGKL---EAVQYKTQVV 48
Query: 87 SGIKYYLTIEATTGENGEIQMFDSI 111
+G YY+ + A + +++F S+
Sbjct: 49 AGTNYYIKVRAGDNKYLHLKVFKSL 73
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.132 0.345
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,543,266
Number of Sequences: 62578
Number of extensions: 82632
Number of successful extensions: 190
Number of sequences better than 100.0: 32
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 174
Number of HSP's gapped (non-prelim): 32
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 45 (21.9 bits)