Query 035532
Match_columns 112
No_of_seqs 118 out of 829
Neff 6.2
Searched_HMMs 46136
Date Fri Mar 29 03:47:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035532.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035532hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF00031 Cystatin: Cystatin do 99.7 1.1E-17 2.4E-22 110.0 8.9 61 29-100 1-61 (94)
2 cd00042 CY Substituted updates 99.7 9.1E-17 2E-21 107.6 9.5 59 29-99 1-59 (105)
3 smart00043 CY Cystatin-like do 99.7 5.6E-17 1.2E-21 109.1 6.9 63 27-100 2-64 (107)
4 PF07430 PP1: Phloem filament 99.3 3.2E-12 6.9E-17 95.5 7.0 74 25-112 111-186 (202)
5 TIGR01638 Atha_cystat_rel Arab 98.5 3.1E-07 6.6E-12 61.7 6.3 54 39-103 11-64 (92)
6 PF07430 PP1: Phloem filament 98.5 3.2E-07 7E-12 68.8 6.2 75 25-112 4-80 (202)
7 PF06907 Latexin: Latexin; In 90.9 5.3 0.00012 30.8 10.3 67 38-112 4-73 (220)
8 COG3360 Uncharacterized conser 74.8 19 0.00042 23.0 6.5 46 42-99 18-65 (71)
9 TIGR01572 A_thl_para_3677 Arab 72.6 6.4 0.00014 31.1 4.1 57 43-111 42-100 (265)
10 PF00666 Cathelicidins: Cathel 72.5 6.1 0.00013 25.0 3.3 28 43-79 4-31 (67)
11 PF07311 Dodecin: Dodecin; In 71.0 23 0.0005 22.2 7.3 48 39-98 12-61 (66)
12 PF08194 DIM: DIM protein; In 65.8 7.8 0.00017 21.7 2.4 23 1-23 1-23 (36)
13 PF10731 Anophelin: Thrombin i 60.0 8.7 0.00019 24.0 2.1 21 1-23 1-21 (65)
14 PF15240 Pro-rich: Proline-ric 52.9 9.7 0.00021 28.5 1.7 13 6-18 2-14 (179)
15 PF05679 CHGN: Chondroitin N-a 50.7 57 0.0012 27.6 6.3 48 41-99 161-210 (499)
16 PF12276 DUF3617: Protein of u 39.7 34 0.00074 23.9 2.9 13 87-99 128-140 (162)
17 TIGR03481 HpnM hopanoid biosyn 35.4 1E+02 0.0022 22.8 5.0 32 80-112 127-160 (198)
18 PTZ00459 mucin-associated surf 34.7 28 0.00061 27.6 1.9 19 1-19 1-21 (291)
19 PRK02710 plastocyanin; Provisi 33.4 39 0.00085 22.8 2.2 17 1-17 1-17 (119)
20 CHL00132 psaF photosystem I su 29.8 1.7E+02 0.0036 22.1 5.2 26 27-55 25-50 (185)
21 PF08884 Flagellin_D3: Flagell 27.1 88 0.0019 20.8 3.0 23 89-112 37-59 (90)
22 TIGR02105 III_needle type III 26.1 90 0.002 19.8 2.8 21 38-58 31-51 (72)
23 COG5510 Predicted small secret 24.9 79 0.0017 18.4 2.1 17 1-17 1-17 (44)
24 PRK10081 entericidin B membran 23.1 79 0.0017 18.7 2.0 18 1-18 1-18 (48)
25 PF00041 fn3: Fibronectin type 21.7 80 0.0017 18.4 1.9 16 84-99 62-77 (85)
26 cd01781 AF6_RA_repeat2 Ubiquit 21.4 1.3E+02 0.0027 20.5 2.9 33 39-80 24-56 (100)
No 1
>PF00031 Cystatin: Cystatin domain; InterPro: IPR000010 Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. The cystatins are cysteine proteinase inhibitors belonging to MEROPS inhibitor family I25, clan IH [, , ]. They mainly inhibit peptidases belonging to peptidase families C1 (papain family) and C13 (legumain family). The cystatin family includes: The Type 1 cystatins, which are intracellular cystatins that are present in the cytosol of many cell types, but can also appear in body fluids at significant concentrations. They are single-chain polypeptides of about 100 residues, which have neither disulphide bonds nor carbohydrate side chains. The Type 2 cystatins, which are mainly extracellular secreted polypeptides synthesised with a 19-28 residue signal peptide. They are broadly distributed and found in most body fluids. The Type 3 cystatins, which are multidomain proteins. The mammalian representatives of this group are the kininogens. There are three different kininogens in mammals: H- (high molecular mass, IPR002395 from INTERPRO) and L- (low molecular mass) kininogen which are found in a number of species, and T-kininogen that is found only in rat. Unclassified cystatins. These are cystatin-like proteins found in a range of organisms: plant phytocystatins, fetuin in mammals, insect cystatins and a puff adder venom cystatin which inhibits metalloproteases of the MEROPS peptidase family M12 (astacin/adamalysin). Also a number of the cystatins-like proteins have been shown to be devoid of inhibitory activity. All true cystatins inhibit cysteine peptidases of the papain family (MEROPS peptidase family C1), and some also inhibit legumain family enzymes (MEROPS peptidase family C13). These peptidases play key roles in physiological processes, such as intracellular protein degradation (cathepsins B, H and L), are pivotal in the remodelling of bone (cathepsin K), and may be important in the control of antigen presentation (cathepsin S, mammalian legumain). Moreover, the activities of such peptidases are increased in pathophysiological conditions, such as cancer metastasis and inflammation. Additionally, such peptidases are essential for several pathogenic parasites and bacteria. Thus in animals cystatins not only have capacity to regulate normal body processes and perhaps cause disease when down-regulated, but in other organisms may also participate in defence against biotic and abiotic stress. ; GO: 0004869 cysteine-type endopeptidase inhibitor activity; PDB: 3L0R_B 2W9P_K 2W9Q_A 3S67_A 3QRD_D 1R4C_G 3GAX_A 1TIJ_B 1G96_A 3NX0_A ....
Probab=99.75 E-value=1.1e-17 Score=109.97 Aligned_cols=61 Identities=34% Similarity=0.602 Sum_probs=58.4
Q ss_pred CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532 29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG 100 (112)
Q Consensus 29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~ 100 (112)
|||++++ ++||+++++++||+.+||+++ ++.+.+++.+|++|++|||+|++|+|+++++++
T Consensus 1 Gg~~~~~--~~dp~v~~~~~~al~~~N~~~---------~~~~~~~~~~v~~a~~QvV~G~~Y~i~~~~~~t 61 (94)
T PF00031_consen 1 GGPSPVD--PNDPEVQEAAEFALDKFNEQS---------NSGYKFKLVKVISATTQVVAGINYYIEFEVGET 61 (94)
T ss_dssp SSEEEEC--TTSHHHHHHHHHHHHHHHHHS---------TTSEEEEEEEEEEEEEEESSSEEEEEEEEEEEE
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHHhC---------cccCcceeeeeeEEEEeecCCceEEEEEEEEcc
Confidence 8999998 799999999999999999998 679999999999999999999999999999994
No 2
>cd00042 CY Substituted updates: Jan 30, 2002
Probab=99.71 E-value=9.1e-17 Score=107.64 Aligned_cols=59 Identities=44% Similarity=0.707 Sum_probs=55.9
Q ss_pred CceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532 29 GGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT 99 (112)
Q Consensus 29 GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~ 99 (112)
|||.+++ .+||+++++++||+++||+.+ ++.+ +++.+|++|++|||+|++|+|++++.+
T Consensus 1 gg~~~~~--~~d~~~~~~~~~a~~~~N~~~---------~~~~-~~~~~i~~~~~QvvaG~~y~i~~~~~~ 59 (105)
T cd00042 1 GGPSDIP--ANDPEVQELADFAVAEYNKKS---------NDKY-LEFFKVLSAKSQVVAGTNYYITVEAGD 59 (105)
T ss_pred CCCccCC--CCCHHHHHHHHHHHHHHHhhc---------Cccc-eeEEEEEEEEEEEEeeeEEEEEEEEec
Confidence 8999997 799999999999999999998 5677 999999999999999999999999998
No 3
>smart00043 CY Cystatin-like domain. Cystatins are a family of cysteine protease inhibitors that occur mainly as single domain proteins. However some extracellular proteins such as kininogen, His-rich glycoprotein and fetuin also contain these domains.
Probab=99.69 E-value=5.6e-17 Score=109.11 Aligned_cols=63 Identities=38% Similarity=0.595 Sum_probs=58.5
Q ss_pred ccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG 100 (112)
Q Consensus 27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~ 100 (112)
++|||++++ .+||+++++++||+.+||+++ ++.+.+++.+|++|++|||+|++|+|++++.+.
T Consensus 2 ~~Gg~~~~~--~~d~~~~~~~~~a~~~~N~~~---------~~~~~~~~~~v~~a~~QvvaG~~y~l~~~v~~t 64 (107)
T smart00043 2 CLGGPSDVP--PNDPEVQEAADFAVAEYNKKS---------NDKYELRVIKVVSAKSQVVAGTNYYLKVEVGET 64 (107)
T ss_pred CCCCCccCC--CCCHHHHHHHHHHHHHHHHhc---------ccchhhhhhhhheeeeeeecceEEEEEEEEEec
Confidence 689999997 689999999999999999998 557888899999999999999999999999984
No 4
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=99.34 E-value=3.2e-12 Score=95.50 Aligned_cols=74 Identities=34% Similarity=0.471 Sum_probs=65.1
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecCCC
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTGEN 102 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~~~ 102 (112)
.+....|.+++|+ ++|.+|+++.|||.|||+ . +..++|.+|.+++.|=++ |++|+|.+.+.+ ..
T Consensus 111 ~p~~~~Wi~I~ni-n~p~VQeLgkFAV~EhNK-~-----------gd~LkF~KV~eGw~q~l~~d~ikYrLhI~AkD-g~ 176 (202)
T PF07430_consen 111 TPQSKKWIPIPNI-NNPFVQELGKFAVIEHNK-A-----------GDKLKFEKVYEGWYQDLGNDGIKYRLHIVAKD-GL 176 (202)
T ss_pred CcccCCCEECCCC-CcHHHHHHHHHHHHHHhh-c-----------CCceEEEEEeeEEEEeccCCCceEEEEEEeec-CC
Confidence 4556889999886 999999999999999994 3 358999999999999775 699999999999 45
Q ss_pred CeeeeEEEEC
Q 035532 103 GEIQMFDSIV 112 (112)
Q Consensus 103 g~~~~y~a~V 112 (112)
|+...|+|+|
T Consensus 177 G~~~~YeAvV 186 (202)
T PF07430_consen 177 GRLGNYEAVV 186 (202)
T ss_pred CCcCceEEEE
Confidence 9999999986
No 5
>TIGR01638 Atha_cystat_rel Arabidopsis thaliana cystatin-related protein. This model represents a family similar in sequence and probably homologous to a large family of cysteine proteinase inhibitors, or cystatins, as described by pfam model pfam00031. Cystatins may help plants resist attack by insects.
Probab=98.53 E-value=3.1e-07 Score=61.68 Aligned_cols=54 Identities=22% Similarity=0.355 Sum_probs=48.7
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCC
Q 035532 39 KNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENG 103 (112)
Q Consensus 39 ~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g 103 (112)
+.+-+..++++|+++||... ...+++++|++|..|..+|.+|+||+++.+..+|
T Consensus 11 ~rd~~~~la~~al~k~N~~~-----------~t~lEfV~vVrAn~~~~~g~~~yITF~Ard~~d~ 64 (92)
T TIGR01638 11 NRDLLERLSYVASKKYNDTK-----------FLNLELVEVVRANYRGGAKSKSYITFEARDKPDG 64 (92)
T ss_pred HHHHHHHHHHHHHHHhhhhc-----------CceEEEEEEEEEEeeccceEEEEEEEEEecCCCC
Confidence 45668999999999999987 5899999999999999999999999999986555
No 6
>PF07430 PP1: Phloem filament protein PP1; InterPro: IPR009994 This domain represents a conserved region approximately 200 residues long, four copies of which are found within the plant phloem filament protein PP1. This is one of the constituents of the proteinaceous filaments found in the sieve elements of Cucurbita phloem [].
Probab=98.49 E-value=3.2e-07 Score=68.80 Aligned_cols=75 Identities=27% Similarity=0.379 Sum_probs=67.5
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEe--EeeeeceEEEEEEEEecCCC
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQ--KQVVSGIKYYLTIEATTGEN 102 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~--~QVVaG~nY~l~v~v~~~~~ 102 (112)
....+||.+++|+ .+|.+|+++.|++++++.+. ...+++..|.+.+ .|.+.+++|+|.+++.+ --
T Consensus 4 ~~~~~~w~~ip~v-~~~~~q~v~~~~veq~k~~~-----------~~~l~~~~v~egwy~el~~~~~~yrlhv~a~d-~l 70 (202)
T PF07430_consen 4 VPFSPKWIKIPDV-KEPCLQEVAKFAVEQFKIQY-----------GDSLKFRSVVEGWYFELCPNSLKYRLHVKAID-FL 70 (202)
T ss_pred cccCcccccCCcc-cchHHHHHHHHHHHHHhhhc-----------ccceeeeeeeeceeecccccceeEEEeehhhh-hh
Confidence 3457999999997 89999999999999999987 5689999999998 88999999999999998 67
Q ss_pred CeeeeEEEEC
Q 035532 103 GEIQMFDSIV 112 (112)
Q Consensus 103 g~~~~y~a~V 112 (112)
|..-+|||++
T Consensus 71 ~r~l~~e~ii 80 (202)
T PF07430_consen 71 GRSLKYEAII 80 (202)
T ss_pred ccccceeeee
Confidence 8888999875
No 7
>PF06907 Latexin: Latexin; InterPro: IPR009684 This family consists of several animal specific latexin and proteins related to latexin that belong to MEROPS proteinase inhibitor family I47, clan I- []. Latexin, a protein possessing inhibitory activity against rat carboxypeptidase A1 (CPA1) and CPA2 (MEROPS peptidase family M14A), is expressed in a neuronal subset in the cerebral cortex and cells in other neural and non-neural tissues of rat [, ]. OCX-32, the 32 kDa eggshell matrix protein, is present at high levels in the uterine fluid during the terminal phase of eggshell formation, and is localised predominantly in the outer eggshell. The timing of OCX-32 secretion into the uterine fluid suggests that it may play a role in the termination of mineral deposition []. OCX-32 protein possesses limited identity (32%) to two unrelated proteins: latexin and to a skin protein that is encoded by a retinoic acid receptor-responsive gene, TIG1. Tazarotene Induced Gene 1 (TIG1) is a putative 228 transmembrane protein with a small N-terminal intracellular region, a single membrane-spanning hydrophobic region, and a large C-terminal extracellular region containing a glycosylation signal. TIG1 is up-regulated by retinoic acid receptor but not by retinoid X receptor-specific synthetic retinoids []. TIG1 may be a tumour suppressor gene whose diminished expression is involved in the malignant progression of prostate cancer [].; PDB: 1WNH_A 2BO9_B.
Probab=90.91 E-value=5.3 Score=30.78 Aligned_cols=67 Identities=16% Similarity=0.184 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecCCCC-eeeeEEEEC
Q 035532 38 KKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTGENG-EIQMFDSIV 112 (112)
Q Consensus 38 ~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~~~g-~~~~y~a~V 112 (112)
++.-..+++|+-|..-+|-..+. -...+.+.+|.+|+..++. |-+|+|++.+.+-..| +..++.|.|
T Consensus 4 p~h~~a~rAA~va~hy~N~~~GS--------P~~l~~l~~V~~a~~e~ip~~G~Ky~L~FSte~~~~~e~~g~CsA~V 73 (220)
T PF06907_consen 4 PSHRPAQRAARVAQHYINYRAGS--------PSRLFVLQQVQKARAEDIPGEGCKYDLVFSTEEYIEGEHLGNCSAEV 73 (220)
T ss_dssp TTSHHHHHHHHHHHHHHHHHH-B--------TTB-EEEEEEEEEEEEEETTTEEEEEEEEEEEETTT---EEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhccccCC--------CceeeehhhhhhhhheeccCCCCEEEEEEEhHHhhcCCceeEeEEEE
Confidence 45666889999999999988732 1355678889999999885 7899999999984222 445665544
No 8
>COG3360 Uncharacterized conserved protein [Function unknown]
Probab=74.84 E-value=19 Score=23.00 Aligned_cols=46 Identities=17% Similarity=0.311 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEec
Q 035532 42 EVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEATT 99 (112)
Q Consensus 42 ~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~~ 99 (112)
.+.++++-|+..-... ...+.+.+|++-+-+|+.| ..|.++++++=
T Consensus 18 S~d~Ai~~Ai~RA~~t------------~~~l~wfeV~~~rg~v~~g~v~hyqv~lkVgF 65 (71)
T COG3360 18 SIDAAIANAIARAADT------------LDNLDWFEVVETRGHVVDGAVAHYQVTLKVGF 65 (71)
T ss_pred cHHHHHHHHHHHHHhh------------hhcceEEEEEeecccEeecceEEEEEEEEEEE
Confidence 3666777777765544 4679999999999999988 46888888763
No 9
>TIGR01572 A_thl_para_3677 Arabidopsis paralogous family TIGR01572. This model describes a paralogous family of hypothetical proteins in Arabidopsis thaliana. No homologs are detected from other species. Length heterogeneity within the family is attributable partly to a 21-residue repeat present in from zero to three tandem copies. The central region of the repeat resembles the pattern [VIF][FY][QK]GX[LM]P[DEK]XXXDDAL.
Probab=72.57 E-value=6.4 Score=31.14 Aligned_cols=57 Identities=19% Similarity=0.223 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCC--CeeeeEEEE
Q 035532 43 VQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGEN--GEIQMFDSI 111 (112)
Q Consensus 43 v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~--g~~~~y~a~ 111 (112)
+.-.|+.++.-||-.. +..+++..|.+.-+|..+=..|+||+++-+ .+ +..+.|+..
T Consensus 42 vklyAr~GLH~YN~~~-----------GTNlel~~v~K~N~~~~~~~syyITL~A~D-P~s~~s~qTFQtr 100 (265)
T TIGR01572 42 VKIYARVGLHRYNFLE-----------GTNLELDHVDKFNKRMCALSSYYITLLAVD-PDSRFLQQTFQVR 100 (265)
T ss_pred HHHHHHhhhhhhhhcc-----------CccceehhhhhhccchhhheeeeEEEEEec-CCccccceEEEEE
Confidence 4778899999999886 688999999999999999999999999998 55 466677654
No 10
>PF00666 Cathelicidins: Cathelicidin; InterPro: IPR001894 The precursor sequences of a number of antimicrobial peptides secreted by neutrophils (polymorphonuclear leukocytes) upon activation have been found to be evolutionarily related and are collectively known as cathelicidins []. Structurally, these proteins consist of three domains: a signal sequence, a conserved region of about 100 residues that contains four cysteines involved in two disulphide bonds, and a highly divergent C-terminal section of variable size. It is in this C-terminal section that the antibacterial peptides are found; they are proteolytically processed from their precursor by enzymes such as elastase. This structure is shown in the following schematic representation: +---+--------------------------------+--------------------+ |Sig| Propeptide C C C C | Antibacterial pep. | +---+----------------|--|--|--|------+--------------------+ | | | | +--+ +--+ 'C': conserved cysteine involved in a disulphide bond. ; GO: 0006952 defense response, 0005576 extracellular region; PDB: 1KWI_A 1PFP_A 1LXE_A 1N5P_A 1N5H_A.
Probab=72.46 E-value=6.1 Score=24.99 Aligned_cols=28 Identities=14% Similarity=0.105 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHhhhhhcccccccccccceeEeEEE
Q 035532 43 VQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVL 79 (112)
Q Consensus 43 v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~ 79 (112)
++++...||..||+++ .+...|++.+..
T Consensus 4 Y~eav~~Av~~yN~~s---------~~~nlfRLLe~~ 31 (67)
T PF00666_consen 4 YEEAVLRAVDFYNQGS---------SGENLFRLLELD 31 (67)
T ss_dssp CHHHHHHHHHHHHHCS----------SSEEEEEEEE-
T ss_pred HHHHHHHHHHHHhcCC---------CccCceeeeecc
Confidence 4789999999999998 335556555443
No 11
>PF07311 Dodecin: Dodecin; InterPro: IPR009923 This entry represents proteins with a Dodecin-like topology. Dodecin flavoprotein is a small dodecameric flavin-binding protein from Halobacterium salinarium (Halobacterium halobium) that contains two flavins stacked in a single binding pocket between two tryptophan residues to form an aromatic tetrade []. Dodecin binds riboflavin, although it appears to have a broad specificity for flavins. Lumichrome, a molecule associated with flavin metabolism, appears to be a ligand of dodecin, which could act as a waste-trapping device. ; PDB: 2VYX_L 2DEG_F 2V18_K 2V19_D 2UX9_B 2CZ8_E 2V21_F 2CC8_A 2CCB_A 2VX9_A ....
Probab=70.98 E-value=23 Score=22.24 Aligned_cols=48 Identities=17% Similarity=0.302 Sum_probs=39.6
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 39 KNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 39 ~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
+...+.++.+-|+.+-++.- ..++.++|..-+-.|..| +.|+.+++++
T Consensus 12 S~~S~edAv~~Av~~A~kTl------------~ni~~~eV~e~~~~v~dg~i~~y~v~lkv~ 61 (66)
T PF07311_consen 12 SPKSWEDAVQNAVARASKTL------------RNIRWFEVKEQRGHVEDGKITEYQVNLKVS 61 (66)
T ss_dssp ESSHHHHHHHHHHHHHHHHS------------SSEEEEEEEEEEEEEETTCEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHhhch------------hCcEEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 34568899999999888764 679999999999999988 5788888875
No 12
>PF08194 DIM: DIM protein; InterPro: IPR013172 Drosophila immune-induced molecules (DIMs) are short proteins induced during the immune response of Drosophila []. This entry includes DIMs 1 to 4 and DIM23.
Probab=65.83 E-value=7.8 Score=21.70 Aligned_cols=23 Identities=30% Similarity=0.301 Sum_probs=10.7
Q ss_pred CchhhHHHHHHHHHHHHchhccC
Q 035532 1 MAKLARALILSLLLLSITASVNG 23 (112)
Q Consensus 1 ma~~~~llll~~~~l~~~~~~~~ 23 (112)
|-++...++|.++.|+.+.++++
T Consensus 1 Mk~l~~a~~l~lLal~~a~~~~p 23 (36)
T PF08194_consen 1 MKCLSLAFALLLLALAAAVPATP 23 (36)
T ss_pred CceeHHHHHHHHHHHHhcccCCC
Confidence 44554445555444444433434
No 13
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=60.04 E-value=8.7 Score=24.02 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=12.8
Q ss_pred CchhhHHHHHHHHHHHHchhccC
Q 035532 1 MAKLARALILSLLLLSITASVNG 23 (112)
Q Consensus 1 ma~~~~llll~~~~l~~~~~~~~ 23 (112)
||.+ |+++++|++++.+.+++
T Consensus 1 MA~K--l~vialLC~aLva~vQ~ 21 (65)
T PF10731_consen 1 MASK--LIVIALLCVALVAIVQS 21 (65)
T ss_pred Ccch--hhHHHHHHHHHHHHHhc
Confidence 7777 66666666665554433
No 14
>PF15240 Pro-rich: Proline-rich
Probab=52.88 E-value=9.7 Score=28.50 Aligned_cols=13 Identities=31% Similarity=0.549 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHc
Q 035532 6 RALILSLLLLSIT 18 (112)
Q Consensus 6 ~llll~~~~l~~~ 18 (112)
+|+|||+.||+|.
T Consensus 2 LlVLLSvALLALS 14 (179)
T PF15240_consen 2 LLVLLSVALLALS 14 (179)
T ss_pred hhHHHHHHHHHhh
Confidence 3677777777665
No 15
>PF05679 CHGN: Chondroitin N-acetylgalactosaminyltransferase; InterPro: IPR008428 This family represents Chondroitin N-acetylgalactosaminyltransferase. Proteins have a type II transmembrane topology. The enzyme is involved in the biosynthetic initiation and elongation of chondroitin sulphate and is the key enzyme responsible for the selective chain assembly of chondroitin/dermatan sulphate on the linkage region tetrasaccharide common to various proteoglycans containing chondroitin/dermatan sulphate or heparin/heparan sulphate chains. ; GO: 0016758 transferase activity, transferring hexosyl groups, 0032580 Golgi cisterna membrane
Probab=50.71 E-value=57 Score=27.63 Aligned_cols=48 Identities=19% Similarity=0.403 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEee--eeceEEEEEEEEec
Q 035532 41 KEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQV--VSGIKYYLTIEATT 99 (112)
Q Consensus 41 ~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QV--VaG~nY~l~v~v~~ 99 (112)
.++.++.+.|++..|+++ ...+++.+++.....+ .-|+-|.|++.+..
T Consensus 161 ~dl~~vi~~a~~~ln~~~-----------~~~~~~~~l~~GY~R~dp~rG~~Y~Ldl~l~~ 210 (499)
T PF05679_consen 161 EDLDDVIEQAMEELNRKS-----------RRVLEFRDLINGYRRFDPTRGMDYILDLLLKY 210 (499)
T ss_pred HHHHHHHHHHHHHHhccc-----------cccEEeeeeeeEEEEecCCCCceEEEEEEEee
Confidence 689999999999999987 3678889999887665 56999999988765
No 16
>PF12276 DUF3617: Protein of unknown function (DUF3617); InterPro: IPR022061 This family of proteins is found in bacteria. Proteins in this family are typically between 155 and 179 amino acids in length. There is a single completely conserved residue C that may be functionally important.
Probab=39.69 E-value=34 Score=23.87 Aligned_cols=13 Identities=31% Similarity=0.253 Sum_probs=7.5
Q ss_pred eceEEEEEEEEec
Q 035532 87 SGIKYYLTIEATT 99 (112)
Q Consensus 87 aG~nY~l~v~v~~ 99 (112)
.+..|..++.+..
T Consensus 128 ~~~~~~~~~~~~~ 140 (162)
T PF12276_consen 128 SPTSYTGTMTMTS 140 (162)
T ss_pred CCCeEEEEEEEEe
Confidence 4556666665554
No 17
>TIGR03481 HpnM hopanoid biosynthesis associated membrane protein HpnM. The genomes containing members of this family share the machinery for the biosynthesis of hopanoid lipids. Furthermore, the genes of this family are usually located proximal to other components of this biological process. The proteins are members of the pfam05494 family of putative transporters known as "toluene tolerance protein Ttg2D", although it is unlikely that the members included here have anything to do with toluene per-se.
Probab=35.42 E-value=1e+02 Score=22.82 Aligned_cols=32 Identities=13% Similarity=0.194 Sum_probs=24.5
Q ss_pred EEeEeee--eceEEEEEEEEecCCCCeeeeEEEEC
Q 035532 80 EAQKQVV--SGIKYYLTIEATTGENGEIQMFDSIV 112 (112)
Q Consensus 80 ~a~~QVV--aG~nY~l~v~v~~~~~g~~~~y~a~V 112 (112)
...++++ .|..+.+...+.. .+|+++.|+.++
T Consensus 127 ~V~t~i~~~~g~~i~V~y~l~~-~~g~WkV~DV~i 160 (198)
T TIGR03481 127 IVRSTIVSDGGDPVKFDYIMRQ-GQGKWRIVDILA 160 (198)
T ss_pred EEEEEEEcCCCCcEEEEEEEEe-cCCCeEEEEEEE
Confidence 3456666 5678888888887 689999998764
No 18
>PTZ00459 mucin-associated surface protein (MASP); Provisional
Probab=34.71 E-value=28 Score=27.58 Aligned_cols=19 Identities=26% Similarity=0.354 Sum_probs=15.0
Q ss_pred Cchhh--HHHHHHHHHHHHch
Q 035532 1 MAKLA--RALILSLLLLSITA 19 (112)
Q Consensus 1 ma~~~--~llll~~~~l~~~~ 19 (112)
|||+. |+||+-+|+++-+.
T Consensus 1 MaMmMTGRVLLVCALCVLWCg 21 (291)
T PTZ00459 1 MAMMMTGRVLLVCALCVLWCG 21 (291)
T ss_pred CccchhchHHHHHHHHHHhcC
Confidence 78776 99998888887764
No 19
>PRK02710 plastocyanin; Provisional
Probab=33.39 E-value=39 Score=22.82 Aligned_cols=17 Identities=29% Similarity=0.350 Sum_probs=9.8
Q ss_pred CchhhHHHHHHHHHHHH
Q 035532 1 MAKLARALILSLLLLSI 17 (112)
Q Consensus 1 ma~~~~llll~~~~l~~ 17 (112)
|++.+++++.++++++.
T Consensus 1 ~~~~~~~~~~~~~~~~~ 17 (119)
T PRK02710 1 MAKRLRSIAAALVAVVS 17 (119)
T ss_pred CchhHHHHHHHHHHHHH
Confidence 66666555555555444
No 20
>CHL00132 psaF photosystem I subunit III; Validated
Probab=29.78 E-value=1.7e+02 Score=22.07 Aligned_cols=26 Identities=19% Similarity=0.167 Sum_probs=19.5
Q ss_pred ccCceeecCCCCCCHHHHHHHHHHHHHHH
Q 035532 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFN 55 (112)
Q Consensus 27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N 55 (112)
-+.|..+-+ ++|.+++-+.-+++...
T Consensus 25 d~agLtpCs---es~aF~kR~~~~~k~Le 50 (185)
T CHL00132 25 DVAGLTPCS---ESPAFQKRLNNSVKKLE 50 (185)
T ss_pred cccCCccCc---cCHHHHHHHHHHHHHHH
Confidence 467888886 68888888877776543
No 21
>PF08884 Flagellin_D3: Flagellin D3 domain; InterPro: IPR014981 This domain is found in the central portion bacterial flagellin FliC, it contains a structural motif called a beta-folium fold []. Although no specific function is assigned its deletion leads to a reduction in filament stability []. ; PDB: 1IO1_A 1UCU_A 3A5X_A.
Probab=27.09 E-value=88 Score=20.76 Aligned_cols=23 Identities=26% Similarity=0.469 Sum_probs=13.8
Q ss_pred eEEEEEEEEecCCCCeeeeEEEEC
Q 035532 89 IKYYLTIEATTGENGEIQMFDSIV 112 (112)
Q Consensus 89 ~nY~l~v~v~~~~~g~~~~y~a~V 112 (112)
-||+.++.-.. ..++-..||+.|
T Consensus 37 gkYYv~V~g~~-~~~knG~Yev~V 59 (90)
T PF08884_consen 37 GKYYVEVTGTT-ATAKNGYYEVTV 59 (90)
T ss_dssp --EEEEEEEET--SS--EEEEEEE
T ss_pred CCeEEEEEeec-cCCCCccEEEEE
Confidence 58888888776 467778888764
No 22
>TIGR02105 III_needle type III secretion apparatus needle protein. Type III secretion systems translocate proteins, usually virulence factors, out across both inner and outer membranes of certain Gram-negative bacteria and further across the plasma membrane and into the cytoplasm of the host cell. This protein, termed YscF in Yersinia, and EscF, PscF, EprI, etc. in other systems, forms the needle of the injection apparatus.
Probab=26.15 E-value=90 Score=19.83 Aligned_cols=21 Identities=10% Similarity=0.237 Sum_probs=18.0
Q ss_pred CCCHHHHHHHHHHHHHHHhhh
Q 035532 38 KKNKEVQELGKFSVEEFNRSQ 58 (112)
Q Consensus 38 ~~d~~v~~~a~fAv~~~N~~~ 58 (112)
++||+..--.+|++.+||.--
T Consensus 31 ~~nP~~La~~Q~~~~qYs~~~ 51 (72)
T TIGR02105 31 PNDPELMAELQFALNQYSAYY 51 (72)
T ss_pred CCCHHHHHHHHHHHHHHHHHH
Confidence 489999999999999998643
No 23
>COG5510 Predicted small secreted protein [Function unknown]
Probab=24.87 E-value=79 Score=18.41 Aligned_cols=17 Identities=41% Similarity=0.327 Sum_probs=7.0
Q ss_pred CchhhHHHHHHHHHHHH
Q 035532 1 MAKLARALILSLLLLSI 17 (112)
Q Consensus 1 ma~~~~llll~~~~l~~ 17 (112)
|.++..+++++.++.++
T Consensus 1 mmk~t~l~i~~vll~s~ 17 (44)
T COG5510 1 MMKKTILLIALVLLAST 17 (44)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 34443344444433333
No 24
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=23.14 E-value=79 Score=18.74 Aligned_cols=18 Identities=44% Similarity=0.488 Sum_probs=8.6
Q ss_pred CchhhHHHHHHHHHHHHc
Q 035532 1 MAKLARALILSLLLLSIT 18 (112)
Q Consensus 1 ma~~~~llll~~~~l~~~ 18 (112)
|.++...++++++++++.
T Consensus 1 MmKk~i~~i~~~l~~~~~ 18 (48)
T PRK10081 1 MVKKTIAAIFSVLVLSTV 18 (48)
T ss_pred ChHHHHHHHHHHHHHHHH
Confidence 545544444554444443
No 25
>PF00041 fn3: Fibronectin type III domain; InterPro: IPR003961 Fibronectins are multi-domain glycoproteins found in a soluble form in plasma, and in an insoluble form in loose connective tissue and basement membranes []. They contain multiple copies of 3 repeat regions (types I, II and III), which bind to a variety of substances including heparin, collagen, DNA, actin, fibrin and fibronectin receptors on cell surfaces. The wide variety of these substances means that fibronectins are involved in a number of important functions: e.g., wound healing; cell adhesion; blood coagulation; cell differentiation and migration; maintenance of the cellular cytoskeleton; and tumour metastasis []. The role of fibronectin in cell differentiation is demonstrated by the marked reduction in the expression of its gene when neoplastic transformation occurs. Cell attachment has been found to be mediated by the binding of the tetrapeptide RGDS to integrins on the cell surface [], although related sequences can also display cell adhesion activity. Plasma fibronectin occurs as a dimer of 2 different subunits, linked together by 2 disulphide bonds near the C terminus. The difference in the 2 chains occurs in the type III repeat region and is caused by alternative splicing of the mRNA from one gene []. The observation that, in a given protein, an individual repeat of one of the 3 types (e.g., the first FnIII repeat) shows much less similarity to its subsequent tandem repeats within that protein than to its equivalent repeat between fibronectins from other species, has suggested that the repeating structure of fibronectin arose at an early stage of evolution. It also seems to suggest that the structure is subject to high selective pressure []. The fibronectin type III repeat region is an approximately 100 amino acid domain, different tandem repeats of which contain binding sites for DNA, heparin and the cell surface []. The superfamily of sequences believed to contain FnIII repeats represents 45 different families, the majority of which are involved in cell surface binding in some manner, or are receptor protein tyrosine kinases, or cytokine receptors.; GO: 0005515 protein binding; PDB: 1UEM_A 1TDQ_A 1X5I_A 2IC2_B 2IBG_C 2IBB_A 3R8Q_A 2FNB_A 1FNH_A 2EDB_A ....
Probab=21.72 E-value=80 Score=18.42 Aligned_cols=16 Identities=19% Similarity=0.399 Sum_probs=13.9
Q ss_pred eeeeceEEEEEEEEec
Q 035532 84 QVVSGIKYYLTIEATT 99 (112)
Q Consensus 84 QVVaG~nY~l~v~v~~ 99 (112)
++..|+.|.+.|.+..
T Consensus 62 ~L~p~t~Y~~~v~a~~ 77 (85)
T PF00041_consen 62 GLQPGTTYEFRVRAVN 77 (85)
T ss_dssp SCCTTSEEEEEEEEEE
T ss_pred cCCCCCEEEEEEEEEe
Confidence 4668999999999888
No 26
>cd01781 AF6_RA_repeat2 Ubiquitin domain of AT-6, second repeat. The AF-6 protein (also known as afadin and canoe) is a multidomain cell junction protein that contains two N-terminal Ras-associating (RA) domains in addition to FHA (forkhead-associated), DIL (class V myosin homology region), and PDZ domains and a proline-rich region. AF6 acts downstream of the Egfr (Epidermal Growth Factor-receptor)/Ras signalling pathway and provides a link from Egfr to cytoskeletal elements.
Probab=21.39 E-value=1.3e+02 Score=20.46 Aligned_cols=33 Identities=9% Similarity=0.094 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEE
Q 035532 39 KNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLE 80 (112)
Q Consensus 39 ~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~ 80 (112)
++...+++..-|++.|+.+. ++...|.+.+|+.
T Consensus 24 ~~~~a~~vV~eALeKygL~~---------e~p~~Y~LveV~~ 56 (100)
T cd01781 24 INDNADRIVGEALEKYGLEK---------SDPDDYCLVEVSN 56 (100)
T ss_pred CCccHHHHHHHHHHHhCCCc---------cCccceEEEEEec
Confidence 56678899999999999876 4467888888863
Done!