Query 035532
Match_columns 112
No_of_seqs 118 out of 829
Neff 6.2
Searched_HMMs 29240
Date Mon Mar 25 05:39:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035532.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035532hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ima_B Cysteine proteinase inh 99.9 7.3E-23 2.5E-27 135.1 10.1 73 27-112 2-74 (91)
2 1eqk_A Oryzacystatin-I; alpha 99.9 6.2E-22 2.1E-26 132.7 10.5 74 25-112 6-79 (102)
3 3ul5_A Canecystatin-1; defense 99.9 1E-21 3.6E-26 139.3 10.2 75 25-112 43-119 (139)
4 2w9q_A Multicystatin; protease 99.9 6.4E-21 2.2E-25 124.2 10.7 70 30-112 1-70 (87)
5 3mwz_A Sialostatin L2; antipar 99.8 7.5E-21 2.6E-25 129.4 10.3 78 25-112 3-97 (115)
6 2l4v_A Cystatin; protease inhi 99.8 1.9E-20 6.4E-25 132.0 10.1 75 25-112 40-115 (135)
7 1yvb_I Cystatin; cysteine prot 99.8 1.4E-20 4.7E-25 126.7 8.9 64 26-100 1-64 (111)
8 2oct_A Cystatin B; stefin, amy 99.8 8.9E-21 3E-25 127.0 7.3 73 26-111 1-73 (98)
9 1roa_A Cystatin D; inhibitor o 99.8 4.8E-20 1.7E-24 126.4 8.9 65 25-100 7-73 (122)
10 3gax_A Cystatin-C; cysteine pr 99.8 5.5E-20 1.9E-24 126.1 8.5 65 24-99 6-70 (120)
11 1cyu_A Cystatin A, stefin A; p 99.8 6.1E-21 2.1E-25 127.0 3.0 72 26-110 1-72 (98)
12 2ch9_A Cystatin F; inhibitor, 99.8 5.4E-19 1.9E-23 123.3 10.9 64 25-99 14-77 (131)
13 2kxg_A Aspartic protease inhib 99.8 2E-19 6.8E-24 120.2 8.1 70 25-112 3-77 (95)
14 3l0r_A Cystatin-2, OMC2; SOFT 99.8 1.9E-19 6.4E-24 123.3 8.1 74 26-112 2-92 (115)
15 2o9u_X Monellin chain B and mo 99.8 8.2E-19 2.8E-23 117.7 6.4 65 28-112 1-76 (97)
16 2bo9_B Human latexin, MUM; met 92.0 2.2 7.4E-05 31.9 10.2 67 38-112 5-74 (222)
17 1kwi_A Protegrin-3 precursor; 87.9 1.2 4.1E-05 29.4 5.3 50 41-99 3-53 (101)
18 3onr_A Protein transport prote 70.5 16 0.00055 22.5 6.2 47 40-98 15-63 (72)
19 2vxa_A Dodecin; flavoprotein, 70.0 16 0.00056 22.4 6.7 47 40-98 16-64 (72)
20 2ux9_A Dodecin; flavoprotein; 69.9 16 0.00055 22.3 6.7 47 40-98 15-63 (69)
21 2cc6_A VNG1446H, dodecin; flav 69.4 16 0.00056 22.2 5.9 47 40-98 13-61 (68)
22 2yiz_A Dodecin; flavoprotein, 68.8 17 0.00059 22.2 6.9 48 39-98 14-63 (69)
23 2qgu_A Probable signal peptide 26.8 1.2E+02 0.0039 21.6 5.0 33 79-112 135-168 (211)
24 4gpa_A Glutamate receptor 4; P 21.1 66 0.0023 23.3 2.8 28 27-58 7-34 (389)
No 1
>3ima_B Cysteine proteinase inhibitor; cystatin, tarocystatin, cecpi, papain, phytocystatin, allergen, disulfide bond, hydrolase, protease; 2.03A {Colocasia esculenta} SCOP: d.17.1.0
Probab=99.89 E-value=7.3e-23 Score=135.08 Aligned_cols=73 Identities=37% Similarity=0.646 Sum_probs=62.4
Q ss_pred ccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCeee
Q 035532 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQ 106 (112)
Q Consensus 27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~~ 106 (112)
++|||+++++.++||+++++++||+++||+++ +..+.+.+|+++++|||||+||+|++++++ +|+.+
T Consensus 2 ~~GG~~~~~~~~~d~~v~~~a~fav~~~n~~~-----------n~~~~~~~Vv~a~~QVVaG~nY~l~v~~~~--~~~~~ 68 (91)
T 3ima_B 2 LMGGIVDVEGAQNSAEVEELARFAVDEHNKKE-----------NALLQFSRLVKAKQQVVSGIMHHLTVEVIE--GGKKK 68 (91)
T ss_dssp CBTCEEC------CHHHHHHHHHHHHHHHHHH-----------TCCCEEEEEEEEEEEESSSEEEEEEEEEEE--TTEEE
T ss_pred CCcccccCcCCCCCHHHHHHHHHHHHHHHHhc-----------CCceEEEEEEEEEEEEeccEEEEEEEEEec--CCceE
Confidence 68999999411699999999999999999998 345788999999999999999999999999 78999
Q ss_pred eEEEEC
Q 035532 107 MFDSIV 112 (112)
Q Consensus 107 ~y~a~V 112 (112)
.|+++|
T Consensus 69 ~y~a~V 74 (91)
T 3ima_B 69 VYEAKV 74 (91)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
No 2
>1eqk_A Oryzacystatin-I; alpha and beta proteins, cystatin-like fold, cystatin/monellin superfamily, phytocystatin family; NMR {Oryza sativa japonica group} SCOP: d.17.1.2
Probab=99.87 E-value=6.2e-22 Score=132.69 Aligned_cols=74 Identities=27% Similarity=0.552 Sum_probs=66.8
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCe
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGE 104 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~ 104 (112)
.+++|||++++| ++||+++++++||+.+||+++ +..+.+.+|+++++|||||+||+|++++++ +++
T Consensus 6 ~~~~GG~~~~~~-~~~~~v~~~a~~Av~~~n~~~-----------n~~~~~~~Vv~a~~QVVaG~~Y~l~v~~~~--~~~ 71 (102)
T 1eqk_A 6 GPVLGGVEPVGN-ENDLHLVDLARFAVTEHNKKA-----------NSLLEFEKLVSVKQQVVAGTLYYFTIEVKE--GDA 71 (102)
T ss_dssp CSCSSSSEEECC-TTCHHHHHHHHHHHHHHHHHT-----------TCCEEEEEEEEEEEEESSSEEEEEEEEEEE--TTC
T ss_pred CCCCcccccCCC-CCCHHHHHHHHHHHHHHHhhc-----------CCceEEEEEEEEEEEEeccEEEEEEEEEec--CCC
Confidence 568999999865 489999999999999999987 345788999999999999999999999999 788
Q ss_pred eeeEEEEC
Q 035532 105 IQMFDSIV 112 (112)
Q Consensus 105 ~~~y~a~V 112 (112)
.+.|+++|
T Consensus 72 ~~~c~~~V 79 (102)
T 1eqk_A 72 KKLYEAKV 79 (102)
T ss_dssp CEEEEEEE
T ss_pred cEEEEEEE
Confidence 99999986
No 3
>3ul5_A Canecystatin-1; defense, hydrolase inhibitor; 2.30A {Saccharum officinarum} PDB: 3ul6_A*
Probab=99.86 E-value=1e-21 Score=139.30 Aligned_cols=75 Identities=24% Similarity=0.438 Sum_probs=58.7
Q ss_pred ccccCceeecC--CCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCC
Q 035532 25 DRLVGGRSEVK--DVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGEN 102 (112)
Q Consensus 25 ~~~~GG~~~~~--~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~ 102 (112)
..++|||++++ + ++||+++++++||+.+||+++ | ..|++.+|++|++|||||+||+|+|++.+ .+
T Consensus 43 ~~~~GG~~~i~~~~-~ndpeVqela~fAV~e~Nkks---------n--~~l~~~kVv~a~sQVVAG~nY~L~V~a~d-~~ 109 (139)
T 3ul5_A 43 VGMVGDVRDAPAGH-ENDLEAIELARFAVAEHNSKT---------N--AMLEFERLVKVRHQVVAGTMHHFTVQVKE-AG 109 (139)
T ss_dssp -------------C-TTCHHHHHHHHHHHHHHHHHH---------C--CCCEEEEEEEEEEEEEEEEEEEEEEEEEC-SS
T ss_pred CCCCCCcccccCCC-CCCHHHHHHHHHHHHHHHHhC---------C--CceeEEEEEEEEEEEecCEEEEEEEEEec-CC
Confidence 66899999993 3 699999999999999999998 3 35899999999999999999999999998 57
Q ss_pred CeeeeEEEEC
Q 035532 103 GEIQMFDSIV 112 (112)
Q Consensus 103 g~~~~y~a~V 112 (112)
|+.+.|+|+|
T Consensus 110 g~~~~y~a~V 119 (139)
T 3ul5_A 110 GGKKLYEAKV 119 (139)
T ss_dssp CCEEEEEEEE
T ss_pred CCeEEEEEEE
Confidence 8999999986
No 4
>2w9q_A Multicystatin; protease inhibitor, thiol protease inhibitor, hydrolase inhibitor; 2.50A {Solanum tuberosum} PDB: 2w9p_A
Probab=99.85 E-value=6.4e-21 Score=124.21 Aligned_cols=70 Identities=33% Similarity=0.680 Sum_probs=64.6
Q ss_pred ceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCeeeeEE
Q 035532 30 GRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEIQMFD 109 (112)
Q Consensus 30 G~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~~~y~ 109 (112)
||++++| ++||+++++++||+.+||+++ | ..+++.+|+++++|||||+||+|++++++ ++|+.+.|+
T Consensus 1 G~~~~~~-~~d~~v~~~~~fAv~~~n~~~---------n--~~~~~~~vv~a~~QVVaG~~Y~l~v~~~~-~~~~~~~c~ 67 (87)
T 2w9q_A 1 GIVNVPN-PNNTKFQELARFAIQDYNKKQ---------N--AHLEFVENLNVKEQVVAGIMYYITLAATD-DAGKKKIYK 67 (87)
T ss_dssp CCEECSS-TTSHHHHHHHHHHHHHHHHHH---------T--CCEEEEEEEEEEEEESSSEEEEEEEEEEE-TTTEEEEEE
T ss_pred CcccCCC-CCCHHHHHHHHHHHHHHHhhc---------C--CceEEEEEEEEEEEEeccEEEEEEEEEec-CCCCeEEEE
Confidence 7899977 499999999999999999998 3 38999999999999999999999999999 678899999
Q ss_pred EEC
Q 035532 110 SIV 112 (112)
Q Consensus 110 a~V 112 (112)
++|
T Consensus 68 ~~V 70 (87)
T 2w9q_A 68 AKI 70 (87)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
No 5
>3mwz_A Sialostatin L2; antiparallel beta-sheet, hydrolase inhibitor; HET: MSE; 1.52A {Ixodes scapularis} PDB: 3lh4_A 3li7_A
Probab=99.85 E-value=7.5e-21 Score=129.45 Aligned_cols=78 Identities=19% Similarity=0.327 Sum_probs=67.9
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccc-cccceeEeEEEEEeEeeeeceEEEEEEEEecC---
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNV-AFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG--- 100 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~-~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~--- 100 (112)
.+++|||+++++ .+||+++++++||+.+||+++ | +.+++++.+|++|++|||+|+||+|++++++.
T Consensus 3 ~~~~Gg~~~~~~-~~~~~v~~~~~~av~~~N~~s---------n~~~~~~~~~~V~~a~~QvVaG~~Y~l~v~v~~t~C~ 72 (115)
T 3mwz_A 3 LALRGGYRERSN-QDDPEYLEMAHYATSTWSAQQ---------PGKTHFDTVVEVMKVETQTVAGTNYRLTLKVAESTCE 72 (115)
T ss_dssp CCCSSCCEEECT-TSCTHHHHHHHHHHHHHHHTS---------TTCCEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEE
T ss_pred cccCCcceECCC-CCCHHHHHHHHHHHHHHHhhc---------CCcccceeeeeeeEEEeeccCCEEEEEEEEEEecccc
Confidence 467999999982 289999999999999999998 4 57888999999999999999999999999641
Q ss_pred -------------CCCeeeeEEEEC
Q 035532 101 -------------ENGEIQMFDSIV 112 (112)
Q Consensus 101 -------------~~g~~~~y~a~V 112 (112)
++++.+.|+++|
T Consensus 73 K~~~~~~~~C~~~~~~~~~~C~~~V 97 (115)
T 3mwz_A 73 LTSTYNKDTCQANANAAQRTCTTVI 97 (115)
T ss_dssp TTSCCCTTTCCCCTTSCEEEEEEEE
T ss_pred CCCcCCcccCCCCCCCCeeEEEEEE
Confidence 357888888875
No 6
>2l4v_A Cystatin; protease inhibitor, hydrolase inhibitor; NMR {Ananas comosus}
Probab=99.83 E-value=1.9e-20 Score=132.05 Aligned_cols=75 Identities=29% Similarity=0.580 Sum_probs=67.1
Q ss_pred ccccCceeecC-CCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCC
Q 035532 25 DRLVGGRSEVK-DVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENG 103 (112)
Q Consensus 25 ~~~~GG~~~~~-~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g 103 (112)
.+++|||++++ +.++|++++++++||+.+||+++ | ..+.+++|+++++|||+|+||+|++++++ ++
T Consensus 40 ~~~~GG~~~i~~~~~nd~evqe~a~fAv~e~N~~s---------n--~~~~f~kVv~a~~QVVAG~nY~l~vev~~--~~ 106 (135)
T 2l4v_A 40 HPIMGGIYDAPLNNENGFDKEDLARFAVREYNNKN---------N--ALLEFVRVVKAKEQVVSGMMHYLTVEVND--AG 106 (135)
T ss_dssp CCCCCCSSCCCCTTTTSHHHHHHHHHHHHHHHHHT---------S--CCCEEEEEEEEEEECSSSEEEEEEEEEEE--TT
T ss_pred CCCCCccCcCCCCCCCCHHHHHHHHHHHHHHHhhc---------C--CceEEEEEEEEEEEEecCEEEEEEEEEec--CC
Confidence 66899999997 22489999999999999999988 3 45677999999999999999999999999 79
Q ss_pred eeeeEEEEC
Q 035532 104 EIQMFDSIV 112 (112)
Q Consensus 104 ~~~~y~a~V 112 (112)
+.+.|+++|
T Consensus 107 ~~~~c~a~V 115 (135)
T 2l4v_A 107 KKKLYEAKV 115 (135)
T ss_dssp EEEEEEEEE
T ss_pred ceEEEEEEE
Confidence 999999986
No 7
>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A
Probab=99.83 E-value=1.4e-20 Score=126.71 Aligned_cols=64 Identities=33% Similarity=0.508 Sum_probs=60.3
Q ss_pred cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG 100 (112)
Q Consensus 26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~ 100 (112)
+++|||++++ .+||+++++++||+.+||+++ |+.++|++.+|++|++|||+|++|+|+++++++
T Consensus 1 ~~~Gg~~~~~--~~d~~v~~~~~~av~~~N~~s---------~~~~~~~l~~v~~a~~QvVaG~~y~l~v~v~~t 64 (111)
T 1yvb_I 1 RLLGAPVPVD--ENDEGLQRALQFAMAEYNRAS---------NDKYSSRVVRVISAKRQLVSGIKYILQVEIGRT 64 (111)
T ss_dssp CCTTCEECCC--TTCHHHHHHHHHHHHHHHHHC---------CCSSCEEEEEECCCEEEESSSEEEEEEEEEEEB
T ss_pred CCCCCceECC--CCCHHHHHHHHHHHHHHHHhC---------CCcceeEEEEEEEEEEEEECCeEEEEEEEEEcc
Confidence 3689999997 799999999999999999998 678999999999999999999999999999994
No 8
>2oct_A Cystatin B; stefin, amyloid, domain-swapping, hand shaking, PR isomerization, protein binding; 1.40A {Homo sapiens} PDB: 1stf_I*
Probab=99.83 E-value=8.9e-21 Score=127.04 Aligned_cols=73 Identities=15% Similarity=0.311 Sum_probs=64.9
Q ss_pred cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI 105 (112)
Q Consensus 26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~ 105 (112)
+|+|||++++ ++||+++++++||++++|+.+ +..+++.+++++++|||||+||+|++++++++..|.
T Consensus 1 mm~GG~~~~~--~~~~evq~i~~~a~~~~n~~~-----------~~~~~~~~vv~~~tQVVAG~NY~ikv~v~~~~~~h~ 67 (98)
T 2oct_A 1 MMSGAPSATQ--PATAETQHIADQVRSQLEEKY-----------NKKFPVFKAVSFKSQVVAGTNYFIKVHVGDEDFVHL 67 (98)
T ss_dssp -CCSSCCCCE--ECCHHHHHHHHHHHHHHHHHH-----------TSCCSCCEEEEEEEEEEEEEEEEEEEECSTTCEEEE
T ss_pred CCcccCcCCC--CCCHHHHHHHHHHHHHHHhhc-----------CCccceeEEEEEEEEEeCCEEEEEEEEECCCcEEEE
Confidence 4789999998 689999999999999999987 345788999999999999999999999999666889
Q ss_pred eeEEEE
Q 035532 106 QMFDSI 111 (112)
Q Consensus 106 ~~y~a~ 111 (112)
+.|+..
T Consensus 68 ~vy~~l 73 (98)
T 2oct_A 68 RVFQSL 73 (98)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 999863
No 9
>1roa_A Cystatin D; inhibitor of cysteine pepidases, protein binding; 1.80A {Homo sapiens} SCOP: d.17.1.2 PDB: 1rn7_A
Probab=99.82 E-value=4.8e-20 Score=126.43 Aligned_cols=65 Identities=29% Similarity=0.444 Sum_probs=58.0
Q ss_pred cc-ccCceeecCCCCCCHHHHHHHHHHHHHHHhh-hhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC
Q 035532 25 DR-LVGGRSEVKDVKKNKEVQELGKFSVEEFNRS-QQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG 100 (112)
Q Consensus 25 ~~-~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~-~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~ 100 (112)
.+ ++|||++++ .+||+++++++||+.+||++ + |+.+.|++.+|++|++|||+|+||+|+++++++
T Consensus 7 ~~~~~Gg~~~~~--~~d~~v~~~a~~Av~~~N~~~s---------~~~~~~~l~~v~~a~~QVVaG~~Y~l~v~v~~t 73 (122)
T 1roa_A 7 SRTLAGGIHATD--LNDKSVQRALDFAISEYNKVIN---------KDEYYSRPLQVMAAYQQIVGGVNYYFNVKFGRT 73 (122)
T ss_dssp -----CCEEEEC--TTSHHHHHHHHHHHHHHHHTTC---------CCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred cCcCCCCCeECC--CCCHHHHHHHHHHHHHHHhccc---------CCCceeEEEEEEEEEEEEECCeEEEEEEEEEcc
Confidence 45 899999997 69999999999999999998 8 678899999999999999999999999999994
No 10
>3gax_A Cystatin-C; cysteine protease inhibitor, 3D domain swapping, protein AGG amyloid, protein engineering, twinning; 1.70A {Homo sapiens} SCOP: d.17.1.2 PDB: 1g96_A 1tij_A 3qrd_A 3ps8_A 3nx0_A 3sva_A 3s67_A 1r4c_A
Probab=99.81 E-value=5.5e-20 Score=126.10 Aligned_cols=65 Identities=32% Similarity=0.536 Sum_probs=56.9
Q ss_pred CccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532 24 YDRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT 99 (112)
Q Consensus 24 ~~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~ 99 (112)
..+++|||++++ ++||+++++++||+.+||+++ |+.++|++.+|+++++|||+|++|+|++++++
T Consensus 6 ~~~~~Gg~~~~~--~~d~~v~~~a~~av~~~N~~s---------n~~~~~~~~~v~~a~~QvVaG~~Y~l~v~v~~ 70 (120)
T 3gax_A 6 PPRLVGGPMDAS--VEEEGVRRALDFAVGEYNKAS---------NDMYHSRACQVVRARKQIVAGVNYFLDVELCR 70 (120)
T ss_dssp ------CCEEEC--TTSHHHHHHHHHHHHHHHHHC---------CCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred cCccCCCCEeCC--CCCHHHHHHHHHHHHHHHhcc---------CCcceeeEEEEEEEEEEEecCeEEEEEEEEEe
Confidence 367899999997 799999999999999999998 67889999999999999999999999999998
No 11
>1cyu_A Cystatin A, stefin A; proteinase inhibitor (cysteine); NMR {Homo sapiens} SCOP: d.17.1.2 PDB: 1cyv_A 1gd3_A 1dvc_A 1dvd_A 1n9j_A 1nb3_I* 1nb5_I* 3k9m_C 3kfq_C 3kse_D* 1gd4_A
Probab=99.81 E-value=6.1e-21 Score=127.02 Aligned_cols=72 Identities=24% Similarity=0.360 Sum_probs=64.4
Q ss_pred cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecCCCCee
Q 035532 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTGENGEI 105 (112)
Q Consensus 26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~~~g~~ 105 (112)
+++|||++++ ++||+++++++||++++|+++ | ..|++.+|++|++|||||+||+|++++++++.-|.
T Consensus 1 ~~~GG~~~~~--~~d~ev~~~a~~av~~~n~~~---------n--~~~~~~~vv~a~~QVVaG~nY~l~v~~~~~~c~~~ 67 (98)
T 1cyu_A 1 MIPGGLSEAK--PATPEIQEIVDKVKPQLEEKT---------N--ETYGKLEAVQYKTQVVAGTNYYIKVRAGDNKYLHL 67 (98)
T ss_dssp CCCSSCSSEE--ESCTTHHHHHHHTCTTTTTSS---------C--CSSSCEEEEEEEEECSSSCEEEEEEEECSSCBCEE
T ss_pred CCCcccccCC--CCCHHHHHHHHHHHHHHHhhc---------C--CCcceEEEEEEEEEEecceEEEEEEEEcCCcEEEE
Confidence 4789999997 699999999999999999987 3 34599999999999999999999999999767788
Q ss_pred eeEEE
Q 035532 106 QMFDS 110 (112)
Q Consensus 106 ~~y~a 110 (112)
+.|+.
T Consensus 68 ~V~~~ 72 (98)
T 1cyu_A 68 KVFKS 72 (98)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 88864
No 12
>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}
Probab=99.80 E-value=5.4e-19 Score=123.28 Aligned_cols=64 Identities=27% Similarity=0.366 Sum_probs=60.5
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEec
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATT 99 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~ 99 (112)
.+++|||++++ .+||+++++++||+++||+++ |+.+.|++.+|++|++|||+|+||+|++++++
T Consensus 14 ~~~~Gg~~~~~--~~d~ev~e~a~~Av~~~N~~s---------n~~~~~~l~~V~~a~~QVVaG~~Y~l~v~v~~ 77 (131)
T 2ch9_A 14 RVKPGFPKTIK--TNDPGVLQAARYSVEKFNNCT---------NDMFLFKESRITRALVQIVKGLKYMLEVEIGR 77 (131)
T ss_dssp SSCCCCCEECC--TTCHHHHHHHHHHHHHHHHHS---------CCSEEEEEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred ccCCCCCeeCC--CCCHHHHHHHHHHHHHHHHhC---------CCCcceEEEEEEEeeeEecCCeEEEEEEEEEc
Confidence 56899999997 699999999999999999998 67888999999999999999999999999997
No 13
>2kxg_A Aspartic protease inhibitor; sqapi, protein, hydrolase inhib; NMR {Cucurbita maxima}
Probab=99.79 E-value=2e-19 Score=120.18 Aligned_cols=70 Identities=19% Similarity=0.380 Sum_probs=62.8
Q ss_pred ccccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeece-----EEEEEEEEec
Q 035532 25 DRLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGI-----KYYLTIEATT 99 (112)
Q Consensus 25 ~~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~-----nY~l~v~v~~ 99 (112)
.+++|||++++ .+||+++++++|||++||++ .+++.+|++| |||+|+ ||+|++++.+
T Consensus 3 ~~~~Gg~~~i~--~nd~~v~e~a~fAv~e~N~~--------------~l~~~~Vv~a--QVVaG~~~~~~~Y~L~l~~~~ 64 (95)
T 2kxg_A 3 GPAIGEVIGIS--VNDPRVKEIAEFALKQHAEQ--------------NLILAGVDAG--QIIKGIPHWDNYYNLILSAKH 64 (95)
T ss_dssp CCSSCCCCCCC--TTCHHHHHHHHHHHHHCCTT--------------CCEEEEEEEE--EEECSSCSSCCEEEEEEEEES
T ss_pred CCCCCcceECC--CCCHHHHHHHHHHHHHHHhh--------------CcEEEEEEEE--eEecCccccCccEEEEEEEec
Confidence 46899999995 69999999999999999974 4899999999 999999 9999999999
Q ss_pred CCCCeeeeEEEEC
Q 035532 100 GENGEIQMFDSIV 112 (112)
Q Consensus 100 ~~~g~~~~y~a~V 112 (112)
+..|+.+.|+|+|
T Consensus 65 ~~~~~~~~y~a~V 77 (95)
T 2kxg_A 65 SPHEFSKFYNVVV 77 (95)
T ss_dssp CTTSCCEEEEEEE
T ss_pred CCCCCceEEEEEE
Confidence 3338899999986
No 14
>3l0r_A Cystatin-2, OMC2; SOFT TICK, protease inhibitor, thiol protease INHI hydrolase inhibitor; 2.45A {Ornithodoros moubata}
Probab=99.79 E-value=1.9e-19 Score=123.26 Aligned_cols=74 Identities=22% Similarity=0.305 Sum_probs=64.4
Q ss_pred cccCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeeceEEEEEEEEecC-----
Q 035532 26 RLVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSGIKYYLTIEATTG----- 100 (112)
Q Consensus 26 ~~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG~nY~l~v~v~~~----- 100 (112)
.++|||++++ ++||+++++++||+. |+++ ++.+++++.+|++|++|||+|+||+|++++++.
T Consensus 2 ~~~GG~~~i~--~~d~~v~~~a~~Av~--N~~s---------~~~~~~~~~kV~~a~~QVVaG~~Y~i~v~v~~t~C~K~ 68 (115)
T 3l0r_A 2 SIPGGWTRQD--PTEARFLELAHFATS--SQTE---------GREFYDTVVTVKEVETQVVAGMNYKLTIEISPSVCKIG 68 (115)
T ss_dssp -CCCSCEEEC--TTCHHHHHHHHHHHT--TCCT---------TCSEEEEEEEEEEEEEEESSSEEEEEEEEEEEEEEEBT
T ss_pred CCcccceeCC--CCCHHHHHHHHHHHh--cccc---------CCCcceEEEEEEEEEEEEEeeEEEEEEEEEeccccccc
Confidence 4789999998 699999999999999 8777 678899999999999999999999999999863
Q ss_pred ------------CCCeeeeEEEEC
Q 035532 101 ------------ENGEIQMFDSIV 112 (112)
Q Consensus 101 ------------~~g~~~~y~a~V 112 (112)
++++.+.|+++|
T Consensus 69 ~~~~~~~~C~~~~~~~~~~C~~~V 92 (115)
T 3l0r_A 69 EVQYSAEQCVPKDAQQKSTCVAVI 92 (115)
T ss_dssp TBCCCTTTCCBSCTTSCEEEEEEE
T ss_pred ccccccccCcccCCCceeEEEEEE
Confidence 246777787765
No 15
>2o9u_X Monellin chain B and monellin chain A; alternative conformations, 3-10 polyproline II helix, plant protein; 1.15A {Dioscoreophyllum cumminsii} SCOP: d.17.1.1 PDB: 3pxm_A 1m9g_A 3pyj_A 1fa3_A 1iv7_A 3q2p_A 1iv9_A 1mnl_A 1mol_A 1fuw_A 4mon_B 3mon_B 1krl_B 4mon_A 1krl_A 3mon_A 2q33_B* 2q33_A*
Probab=99.76 E-value=8.2e-19 Score=117.65 Aligned_cols=65 Identities=32% Similarity=0.587 Sum_probs=56.7
Q ss_pred cCceeecCCCCCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEE-----------eEeeeeceEEEEEEE
Q 035532 28 VGGRSEVKDVKKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEA-----------QKQVVSGIKYYLTIE 96 (112)
Q Consensus 28 ~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a-----------~~QVVaG~nY~l~v~ 96 (112)
+|||+++ | . ||+++++|+|||++||+.++ ...+++.+|+++ ++| |+|+||+|+|+
T Consensus 1 ~Ggw~~i-d-v-~~~iqela~FAV~e~nk~~~----------~~~L~f~~Vv~~~~~~~~~~~~~~~Q-VaG~nY~Ltle 66 (97)
T 2o9u_X 1 MGEWEII-D-I-GPFTQNLGKFAVDEENKIGQ----------YGRLTFNKVIRPCMKKTIYENEGFRE-IKGYEYQLYVY 66 (97)
T ss_dssp -CCCEEE-C-C-SHHHHHHHHHHHHHHHHHCT----------TCSCCEEEEEEEEEEEEEECSSSSCS-EEEEEEEEEEE
T ss_pred CCCceEC-C-C-CHHHHHHHHHHHHHHhcccc----------CCCcEEEEEEEcccccccccchhhee-eccEEEEEEEE
Confidence 4999999 5 4 99999999999999998752 467999999999 999 99999999999
Q ss_pred EecCCCCeeeeEEEEC
Q 035532 97 ATTGENGEIQMFDSIV 112 (112)
Q Consensus 97 v~~~~~g~~~~y~a~V 112 (112)
+.+ + +|+|+|
T Consensus 67 a~d--~----~yeA~V 76 (97)
T 2o9u_X 67 ASD--K----LFRADI 76 (97)
T ss_dssp ETT--E----EC-CEE
T ss_pred EeC--C----ceEEEE
Confidence 988 2 899876
No 16
>2bo9_B Human latexin, MUM; metallocarboxypeptidase, X-RAY endogenous protein inhibitor, metalloprotease carboxypeptidase, hydrolase; HET: NAG; 1.6A {Homo sapiens} SCOP: d.17.1.5 d.17.1.5 PDB: 1wnh_A
Probab=92.03 E-value=2.2 Score=31.85 Aligned_cols=67 Identities=15% Similarity=0.092 Sum_probs=50.1
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeee--ceEEEEEEEEecC-CCCeeeeEEEEC
Q 035532 38 KKNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVS--GIKYYLTIEATTG-ENGEIQMFDSIV 112 (112)
Q Consensus 38 ~~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVa--G~nY~l~v~v~~~-~~g~~~~y~a~V 112 (112)
++.-..+++|+-|..-+|-..+. -...+.+.+|.+|+.+++. |-+|++++.+.+- ..++..++.|.|
T Consensus 5 psh~~a~rAA~vA~hy~N~~~gS--------P~~l~~L~~V~~a~a~~ip~~G~Ky~l~Fs~e~~~~~~~~~~CsA~V 74 (222)
T 2bo9_B 5 PTNYPASRAALVAQNYINYQQGT--------PHRVFEVQKVKQASMEDIPGRGHKYRLKFAVEEIIQKQVKVNCTAEV 74 (222)
T ss_dssp TTSHHHHHHHHHHHHHHHHHHCB--------TTBCEEEEEEEEEEEEEETTTEEEEEEEEEEEETTTCCCEEEEEEEE
T ss_pred CcchHHHHHHHHHHHHhhcccCC--------CceeeehhhhhhhhhhhccCCCcEEEEEEEeeeeecCCceeEEEEEE
Confidence 45566889999999999988731 1345668888999999985 6799999999982 124566666654
No 17
>1kwi_A Protegrin-3 precursor; cathelicidin motif, disulfide, MAD, selenocystine, antimicrobial protein; 2.19A {Sus scrofa} SCOP: d.17.1.3 PDB: 1lxe_A 1n5h_A 1n5p_A 1pfp_A
Probab=87.88 E-value=1.2 Score=29.42 Aligned_cols=50 Identities=12% Similarity=0.072 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeee-eceEEEEEEEEec
Q 035532 41 KEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVV-SGIKYYLTIEATT 99 (112)
Q Consensus 41 ~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVV-aG~nY~l~v~v~~ 99 (112)
-.++|+..-||..||+++ .+.+.|++.+..-...++. -|+++.+.+.+.+
T Consensus 3 lsY~EAv~~Av~~~N~~S---------~~~nlFRLl~~~p~p~~~~d~~~~~~v~FtIkE 53 (101)
T 1kwi_A 3 LSYREAVLRAVDRLNEQS---------SEANLYRLLELDQPPKADEDPGTPKPVSFTVKE 53 (101)
T ss_dssp HHHHHHHHHHHHHHHHHC---------CSSEEEEEEEEC---------CCCEEEEEEEEE
T ss_pred cCHHHHHHHHHHHHhcCC---------CccceeeeecccCCCccCCCCCCcceeEEEEee
Confidence 357899999999999998 3467777777655433333 4567878777765
No 18
>3onr_A Protein transport protein SECE2; calcium dodecin, calcium binding protein, dodecamer, imuuno antigen, metal binding protein; 1.80A {Mycobacterium tuberculosis}
Probab=70.47 E-value=16 Score=22.48 Aligned_cols=47 Identities=21% Similarity=0.320 Sum_probs=38.0
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 40 d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
+..+.++++-|+.+-.+. -..++.++|..-+-.|..| ..|+.+++++
T Consensus 15 ~~S~edAi~nAi~~AskT------------l~ni~~~eV~e~~~~v~dgkv~~yqv~lKV~ 63 (72)
T 3onr_A 15 PTSWEQAAAEAVQRARDS------------VDDIRVARVIEQDMAVDSAGKITYRIKLEVS 63 (72)
T ss_dssp SSCHHHHHHHHHHHHHHH------------CSCCCEEEEEEEEEEECTTCCEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhc------------ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 445788999999988876 4678999999999999887 5788888765
No 19
>2vxa_A Dodecin; flavoprotein, flavin, riboflavin, lumichrome, archaea; HET: RBF; 2.60A {Halorhodospira halophila}
Probab=70.05 E-value=16 Score=22.42 Aligned_cols=47 Identities=13% Similarity=0.315 Sum_probs=38.5
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 40 d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
+..+.++++-|+.+-++- -..++.++|..-+-.|..| ..|+.+++++
T Consensus 16 ~~S~edAi~nAi~~AskT------------l~ni~~~eV~e~r~~v~dgki~~yqV~lKV~ 64 (72)
T 2vxa_A 16 PNGIEEAVNNAIARAGET------------LRHLRWFEVVDTRGHIEGGRVNHWQVTVKVG 64 (72)
T ss_dssp SSCHHHHHHHHHHHHHHH------------CCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhh------------ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 445788999999988876 4679999999999999888 5788888775
No 20
>2ux9_A Dodecin; flavoprotein; HET: FMN COA; 1.4A {Thermus thermophilus} SCOP: d.230.2.1 PDB: 2cz8_A* 2deg_A 2deh_A 2dev_A 2v21_A* 2v18_A* 2vyx_A* 2v19_A*
Probab=69.93 E-value=16 Score=22.28 Aligned_cols=47 Identities=11% Similarity=0.208 Sum_probs=38.7
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 40 d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
+..+.++++-|+.+-++- -..++.++|..-+-.|..| ..|+.+++++
T Consensus 15 ~~S~edAi~nAi~~AskT------------l~ni~~~eV~e~~~~v~dgkv~~yqv~lkV~ 63 (69)
T 2ux9_A 15 EEGLEAAIQAALARARKT------------LRHLDWFEVKEIRGTIGEAGVKEYQVVLEVG 63 (69)
T ss_dssp SSCHHHHHHHHHHHHHHH------------CCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhc------------ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 445788999999988876 4679999999999999888 5888888876
No 21
>2cc6_A VNG1446H, dodecin; flavoprotein, flavin, flavin-like ligands; HET: LUM; 1.27A {Halobacterium salinarum} SCOP: d.230.2.1 PDB: 2cc7_A* 2cc8_A* 2cc9_A 2ccb_A* 2ccc_A* 2cif_A* 2cjc_A* 1mog_A* 2vx9_A* 2cie_A* 2vkf_A* 2vkg_A*
Probab=69.41 E-value=16 Score=22.18 Aligned_cols=47 Identities=4% Similarity=0.184 Sum_probs=38.8
Q ss_pred CHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 40 NKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 40 d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
+..+.++++-|+.+-++- -..++.++|..-+-.|..| ..|+.+++++
T Consensus 13 ~~S~edAi~nAi~~AskT------------l~ni~~~eV~e~~~~v~dgkv~~yqv~lKV~ 61 (68)
T 2cc6_A 13 EESFTAAADDAIDRAEDT------------LDNVVWAEVVDQGVEIGAVEERTYQTEVQVA 61 (68)
T ss_dssp SSCHHHHHHHHHHHHHHH------------CSCEEEEEEEEEEEECTTSSSCEEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHHhc------------ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 445788999999988876 4679999999999999888 6888888876
No 22
>2yiz_A Dodecin; flavoprotein, flavin binding protein, protein-engineering, P storage protein; HET: COA FMN GOL; 1.70A {Mycobacterium tuberculosis} PDB: 3oqt_A 2yj0_A*
Probab=68.77 E-value=17 Score=22.15 Aligned_cols=48 Identities=13% Similarity=0.198 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHHHHHHhhhhhcccccccccccceeEeEEEEEeEeeeec--eEEEEEEEEe
Q 035532 39 KNKEVQELGKFSVEEFNRSQQRQGKVIRNVAFGRLRFSQVLEAQKQVVSG--IKYYLTIEAT 98 (112)
Q Consensus 39 ~d~~v~~~a~fAv~~~N~~~~~~~~~~~~~~~~~~~~~kV~~a~~QVVaG--~nY~l~v~v~ 98 (112)
++..+.++++-|+.+-.+- -..++.++|..-+-.|..| ..|+.+++++
T Consensus 14 S~~S~edAi~nAi~~AskT------------l~ni~~~eV~e~~~~v~dgkv~~yqv~lkv~ 63 (69)
T 2yiz_A 14 SPDGVDAAIQGGLARAAQT------------MRALDWFEVQSIRGHLVDGAVAHFQVTMKVG 63 (69)
T ss_dssp ETTCHHHHHHHHHHHHHHH------------CCCEEEEEEEEEEEEEETTEEEEEEEEEEEE
T ss_pred CCCCHHHHHHHHHHHHHhc------------ccCCeEEEEEEEEEEEeCCcEEEEEEEEEEE
Confidence 3455788999999988876 4679999999999999888 5888888876
No 23
>2qgu_A Probable signal peptide protein; NESG, RSR89, Q8XV73, structural genomics, PSI-2, protein STR initiative; HET: MSE PEF; 1.50A {Ralstonia solanacearum}
Probab=26.76 E-value=1.2e+02 Score=21.59 Aligned_cols=33 Identities=12% Similarity=0.164 Sum_probs=24.9
Q ss_pred EEEeEeee-eceEEEEEEEEecCCCCeeeeEEEEC
Q 035532 79 LEAQKQVV-SGIKYYLTIEATTGENGEIQMFDSIV 112 (112)
Q Consensus 79 ~~a~~QVV-aG~nY~l~v~v~~~~~g~~~~y~a~V 112 (112)
...+++|+ .|-.+.++..+.. .+|+++.|+.+|
T Consensus 135 ~~V~t~i~~~g~~i~v~y~l~~-~~g~WkvyDv~i 168 (211)
T 2qgu_A 135 VVVRSTVNNNGEPVALDYRVEK-SPNGWKVYDINI 168 (211)
T ss_dssp EEEEEEEEETTEEEEEEEEEEE-ETTEEEEEEEEE
T ss_pred EEEEEEEEeCCCeEEEEEEEEE-cCCceEEEEEEE
Confidence 44556643 6888999999887 588999998764
No 24
>4gpa_A Glutamate receptor 4; PBP fold, ligand-gated ION channel, ION transport, transmembrane AMPA receptor regulating proteins, cornichons, ckamp44; HET: NAG; 2.25A {Rattus norvegicus}
Probab=21.11 E-value=66 Score=23.27 Aligned_cols=28 Identities=14% Similarity=0.075 Sum_probs=21.8
Q ss_pred ccCceeecCCCCCCHHHHHHHHHHHHHHHhhh
Q 035532 27 LVGGRSEVKDVKKNKEVQELGKFSVEEFNRSQ 58 (112)
Q Consensus 27 ~~GG~~~~~~~~~d~~v~~~a~fAv~~~N~~~ 58 (112)
..||..+.+ ....+.+.++|+++.|++.
T Consensus 7 ~IG~lf~~~----~~~~~~a~~~Av~~iN~~~ 34 (389)
T 4gpa_A 7 QIGGLFIRN----TDQEYTAFRLAIFLHNTSP 34 (389)
T ss_dssp EEEEEECTT----CHHHHHHHHHHHHHHHTCS
T ss_pred EEEEEEcCC----ChHHHHHHHHHHHHHHhCC
Confidence 368877653 5667789999999999875
Done!