Query 035534
Match_columns 291
No_of_seqs 125 out of 1059
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 03:48:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035534.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035534hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR00946 2a69 he Auxin Efflux 100.0 1.5E-39 3.2E-44 296.1 24.5 269 1-291 1-278 (321)
2 PRK09903 putative transporter 100.0 3.5E-38 7.5E-43 286.1 25.5 259 8-291 3-268 (314)
3 COG0679 Predicted permeases [G 100.0 2.4E-37 5.2E-42 279.8 26.5 261 7-291 2-265 (311)
4 PF03547 Mem_trans: Membrane t 100.0 3.1E-35 6.6E-40 274.0 25.6 280 9-291 1-346 (385)
5 KOG2722 Predicted membrane pro 99.9 3.7E-23 7.9E-28 183.4 5.8 260 12-274 15-337 (408)
6 PF05982 DUF897: Domain of unk 97.8 0.0033 7.2E-08 56.6 17.9 248 16-282 1-267 (327)
7 COG3329 Predicted permease [Ge 97.6 0.014 3.1E-07 51.7 18.6 215 16-239 18-261 (372)
8 PF05684 DUF819: Protein of un 97.0 0.22 4.9E-06 46.5 20.3 67 12-79 23-92 (378)
9 TIGR00841 bass bile acid trans 96.9 0.013 2.9E-07 52.5 11.5 141 7-152 133-275 (286)
10 TIGR00841 bass bile acid trans 96.4 0.0084 1.8E-07 53.8 6.2 64 228-291 11-78 (286)
11 TIGR00832 acr3 arsenical-resis 95.8 0.059 1.3E-06 49.3 9.0 97 187-290 5-113 (328)
12 COG0385 Predicted Na+-dependen 95.7 0.068 1.5E-06 48.3 8.6 78 212-290 26-107 (319)
13 PF03390 2HCT: 2-hydroxycarbox 95.7 2 4.3E-05 40.4 23.5 254 24-284 69-366 (414)
14 TIGR00783 ccs citrate carrier 94.6 3.7 8.1E-05 37.8 22.1 247 31-284 6-299 (347)
15 PF01758 SBF: Sodium Bile acid 94.1 0.095 2.1E-06 43.9 5.0 61 230-290 3-68 (187)
16 PF03601 Cons_hypoth698: Conse 92.9 5.6 0.00012 36.0 14.7 51 192-247 243-295 (305)
17 PF13593 DUF4137: SBF-like CPA 92.0 3.2 6.9E-05 37.8 12.0 136 14-153 164-308 (313)
18 COG1346 LrgB Putative effector 90.6 1.2 2.5E-05 38.3 7.1 97 186-287 28-127 (230)
19 COG0385 Predicted Na+-dependen 89.2 7.7 0.00017 35.3 11.7 132 15-150 168-302 (319)
20 TIGR00783 ccs citrate carrier 88.9 2.3 4.9E-05 39.2 8.1 100 17-118 207-315 (347)
21 PF03601 Cons_hypoth698: Conse 86.7 4.5 9.8E-05 36.7 8.7 89 190-282 25-115 (305)
22 PF13593 DUF4137: SBF-like CPA 86.4 1.9 4E-05 39.3 6.1 91 192-287 1-99 (313)
23 COG5505 Predicted integral mem 85.5 28 0.0006 31.5 14.5 134 14-154 31-173 (384)
24 PF04172 LrgB: LrgB-like famil 84.9 4.4 9.5E-05 34.8 7.3 94 186-285 15-112 (215)
25 PF03812 KdgT: 2-keto-3-deoxyg 83.7 3.8 8.1E-05 37.0 6.5 85 195-280 16-101 (314)
26 PRK10711 hypothetical protein; 82.1 4.8 0.0001 34.9 6.4 95 187-286 27-124 (231)
27 PRK04288 antiholin-like protei 81.7 6.7 0.00015 34.0 7.2 94 187-285 32-128 (232)
28 COG2855 Predicted membrane pro 79.7 50 0.0011 30.3 18.5 34 214-247 271-305 (334)
29 TIGR00844 c_cpa1 na(+)/h(+) an 79.3 15 0.00032 37.8 9.6 85 191-279 38-130 (810)
30 TIGR00698 conserved hypothetic 79.2 52 0.0011 30.3 20.0 60 192-256 251-313 (335)
31 TIGR00659 conserved hypothetic 77.5 8.5 0.00018 33.2 6.5 94 187-285 26-122 (226)
32 KOG2532 Permease of the major 75.5 17 0.00036 35.1 8.7 41 185-225 250-291 (466)
33 PRK12460 2-keto-3-deoxyglucona 72.8 73 0.0016 29.0 11.4 80 194-281 169-249 (312)
34 TIGR00932 2a37 transporter, mo 71.0 40 0.00087 29.6 9.5 88 186-280 11-102 (273)
35 COG0798 ACR3 Arsenite efflux p 71.0 77 0.0017 29.1 11.1 70 77-152 255-325 (342)
36 PRK03659 glutathione-regulated 70.3 1.2E+02 0.0026 30.2 21.3 85 191-281 237-322 (601)
37 PRK03562 glutathione-regulated 69.5 27 0.00059 34.9 8.8 86 190-280 27-114 (621)
38 PRK12460 2-keto-3-deoxyglucona 68.4 19 0.00041 32.7 6.7 84 196-280 17-101 (312)
39 COG3493 CitS Na+/citrate sympo 62.5 1.4E+02 0.003 28.1 21.9 246 31-284 92-385 (438)
40 PF03390 2HCT: 2-hydroxycarbox 60.8 60 0.0013 30.7 8.7 88 29-117 285-381 (414)
41 COG1593 DctQ TRAP-type C4-dica 56.1 1.8E+02 0.0038 27.3 12.8 62 212-287 248-316 (379)
42 PRK10669 putative cation:proto 56.0 57 0.0012 32.1 8.3 82 192-279 249-331 (558)
43 PRK05326 potassium/proton anti 54.2 68 0.0015 31.6 8.5 87 190-281 28-119 (562)
44 COG2855 Predicted membrane pro 53.7 49 0.0011 30.4 6.7 85 192-281 38-123 (334)
45 TIGR00698 conserved hypothetic 53.2 74 0.0016 29.3 7.9 89 191-282 31-121 (335)
46 TIGR00793 kdgT 2-keto-3-deoxyg 51.1 34 0.00074 30.9 5.2 54 226-279 46-100 (314)
47 PF10766 DUF2592: Protein of u 50.8 29 0.00064 21.1 3.2 25 183-207 3-27 (41)
48 TIGR00807 malonate_madL malona 50.3 1.2E+02 0.0025 23.5 7.7 78 15-96 38-119 (125)
49 PF03956 DUF340: Membrane prot 49.6 1.6E+02 0.0034 24.8 12.6 83 68-155 55-137 (191)
50 COG2271 UhpC Sugar phosphate p 48.6 1.4E+02 0.0031 28.5 9.1 24 184-207 243-266 (448)
51 PRK10669 putative cation:proto 46.8 97 0.0021 30.5 8.2 85 190-279 28-114 (558)
52 COG3329 Predicted permease [Ge 46.7 2.3E+02 0.005 25.9 10.4 82 190-282 15-103 (372)
53 COG0798 ACR3 Arsenite efflux p 46.5 2.4E+02 0.0052 26.0 21.2 245 17-290 20-286 (342)
54 PF03817 MadL: Malonate transp 46.0 1.4E+02 0.003 23.1 7.8 77 15-95 38-118 (125)
55 TIGR00832 acr3 arsenical-resis 44.3 2.5E+02 0.0054 25.6 21.0 35 256-290 251-285 (328)
56 PRK03659 glutathione-regulated 44.1 1.6E+02 0.0034 29.5 9.2 85 190-279 27-113 (601)
57 PF05982 DUF897: Domain of unk 43.7 1.6E+02 0.0034 27.0 8.3 81 193-283 1-87 (327)
58 COG4389 Site-specific recombin 43.3 72 0.0016 30.7 6.2 51 130-194 609-659 (677)
59 PRK03562 glutathione-regulated 42.4 3.7E+02 0.008 27.0 20.8 84 192-281 241-325 (621)
60 PLN03159 cation/H(+) antiporte 37.9 3.3E+02 0.0071 28.5 10.7 114 36-153 313-436 (832)
61 PF06826 Asp-Al_Ex: Predicted 37.0 2.3E+02 0.0051 23.2 11.2 124 15-142 28-158 (169)
62 PF03547 Mem_trans: Membrane t 36.8 2.5E+02 0.0054 25.8 9.0 93 192-289 7-101 (385)
63 COG3493 CitS Na+/citrate sympo 36.4 3E+02 0.0064 26.0 8.9 97 19-117 295-400 (438)
64 PF03616 Glt_symporter: Sodium 34.9 3.8E+02 0.0082 24.9 21.4 60 81-142 106-168 (368)
65 PRK04972 putative transporter; 33.4 4.4E+02 0.0095 26.1 10.4 143 5-151 3-181 (558)
66 TIGR00831 a_cpa1 Na+/H+ antipo 33.2 1.4E+02 0.003 29.3 6.9 67 191-263 21-89 (525)
67 TIGR00383 corA magnesium Mg(2+ 30.5 1.8E+02 0.004 26.0 6.8 26 39-65 258-283 (318)
68 PF05684 DUF819: Protein of un 29.8 4.7E+02 0.01 24.5 11.9 124 15-150 241-369 (378)
69 PF03812 KdgT: 2-keto-3-deoxyg 27.4 3.1E+02 0.0067 25.0 7.4 107 8-129 169-279 (314)
70 COG1230 CzcD Co/Zn/Cd efflux s 27.2 4.7E+02 0.01 23.6 10.0 90 109-221 93-192 (296)
71 PF11120 DUF2636: Protein of u 26.4 1.1E+02 0.0025 20.7 3.4 25 3-29 2-26 (62)
72 PRK05274 2-keto-3-deoxyglucona 26.1 1.6E+02 0.0034 27.1 5.5 84 195-279 18-102 (326)
73 COG0475 KefB Kef-type K+ trans 23.7 6.1E+02 0.013 23.8 11.7 149 16-166 245-397 (397)
74 PF00999 Na_H_Exchanger: Sodiu 23.0 32 0.00069 31.7 0.4 85 191-281 234-323 (380)
75 TIGR00946 2a69 he Auxin Efflux 22.5 4.1E+02 0.0089 23.8 7.6 92 192-287 11-105 (321)
76 COG2211 MelB Na+/melibiose sym 22.4 7.2E+02 0.016 24.1 16.9 27 181-207 224-250 (467)
77 PRK09546 zntB zinc transporter 21.8 3.2E+02 0.007 24.6 6.8 24 42-65 266-289 (324)
No 1
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=100.00 E-value=1.5e-39 Score=296.10 Aligned_cols=269 Identities=25% Similarity=0.327 Sum_probs=218.0
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHhHhh-hhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCC--Cc-chhhHHHHH
Q 035534 1 MIGWEDVYKVIVAMVPLYFALMLGYGS-VKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPF--NM-NYRFIGADA 76 (291)
Q Consensus 1 ~~~~~~~~~i~~~vlpi~lii~~G~~~-~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~--~~-~~~~i~~~~ 76 (291)
||.|+ +++.++|+++++++||++ +| +|++|+|+.+.++++++|+++||++|+++.+.+.+ +. .+.......
T Consensus 1 ~~~~~----~~~~ilpv~~ii~lG~~~~~r-~~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~ 75 (321)
T TIGR00946 1 MITYV----ILETVLPILVVILLGYILGKR-FGILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLW 75 (321)
T ss_pred CccHH----HHHHHHHHHHHHHHHHHHHHH-hCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55554 556677999999999999 56 79999999999999999999999999999987654 22 334433344
Q ss_pred HHHHHHHHHHHHHHH-HhcCCcccchhhhhccccccccccchhHHHHHHhhccch---hhHHHHHHHHHHHHHHHHHHHH
Q 035534 77 ISKLIIVIVLAFWSM-CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMA---VDLVVQSSVFQSIVWLTIFLFV 152 (291)
Q Consensus 77 ~~~~i~~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~---~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
.+....+++++..+| ..|+++ +++....+. +.++|++++|+|+++++|||++ ..++..+++.+++..|++++..
T Consensus 76 ~~~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~-~~~~N~~~~GlPl~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (321)
T TIGR00946 76 GAFSGSYALIWLITKPLFKADY-GKLSGFLLV-SALPNTAFIGYPLLLSLFGEEGAKILIAALFIDTGAVLMTIALGLFL 153 (321)
T ss_pred HHHHHHHHHHHHHHHHHHhccc-chhhHHHHH-hhhccceeehHHHHHHHhcccchhhhHHHHHHHhccchhHHHHHHHH
Confidence 445566777788888 555554 344444445 8999999999999999999999 7788888899999999999877
Q ss_pred HhhcccCCCCcccccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhH
Q 035534 153 LEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTG 232 (291)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~p 232 (291)
.+..+.++++ ++.+.++..++.++++++||+++|.++|++++.+ |+++|+++.++++++|++++|
T Consensus 154 ~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~nP~iia~i~Gl~~~~~----~i~lP~~l~~~l~~lg~~~~p 218 (321)
T TIGR00946 154 VSEDGAGGEG-----------SGESTRLMLIFVWKKLIKFPPLWAPLLSVILSLV----GFKMPGLILKSISILSGATTP 218 (321)
T ss_pred hccccccccc-----------cchhHHHHHHHHHHHHHhCCChHHHHHHHHHHHH----hhcCcHHHHHHHHHHHHHHHH
Confidence 6532210000 0112223345678999999999999999999999 999999999999999999999
Q ss_pred HHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534 233 TAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT 291 (291)
Q Consensus 233 laL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~ 291 (291)
++|+++| +++.+..+++++..+..+..|+++.|++++.++..+++|+..++++++++|+
T Consensus 219 laLl~lG~~l~~~~~~~~~~~~~~~~~~klil~P~i~~~~~~~~~l~~~~~~~~vl~aa~ 278 (321)
T TIGR00946 219 MALFSLGLALSPRKIKLGVRDAILALIVRFLVQPAVMAGISKLIGLRGLELSVAILQAAL 278 (321)
T ss_pred HHHHHHHHhhChhhhccChHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHcC
Confidence 9999999 8877666667788999999999999999999999999999999999999985
No 2
>PRK09903 putative transporter YfdV; Provisional
Probab=100.00 E-value=3.5e-38 Score=286.12 Aligned_cols=259 Identities=19% Similarity=0.272 Sum_probs=206.6
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHH
Q 035534 8 YKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM--NYRFIGADAISKLIIVIV 85 (291)
Q Consensus 8 ~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~--~~~~i~~~~~~~~i~~~~ 85 (291)
.+.++.++|+++++++||+++| +|.++||+.+.++++++|+++||++|.++.+.+.++. ++.......++.+..+++
T Consensus 3 ~~~~~~ilpif~ii~lG~~~~r-~~~~~~~~~~~ls~lv~~v~lPalif~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (314)
T PRK09903 3 TFFIGDLLPIIVIMLLGYFSGR-RETFSEDQARAFNKLVLNYALPAALFVSITRANREMIFADTRLTLVSLVVIVGCFFF 81 (314)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 3567889999999999999966 7999999999999999999999999999998865432 455545555555666777
Q ss_pred HHHHHH-HhcCCcccchhhhhccccccccccchhHHHHHHhhccc---hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCC
Q 035534 86 LAFWSM-CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM---AVDLVVQSSVFQSIVWLTIFLFVLEFRRSGND 161 (291)
Q Consensus 86 ~~~~~~-~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (291)
++...| ..++++ .++....+. ++++|++|+|+|+++++||++ ++.++..+ ..++++.|+++.+..+..+.+++
T Consensus 82 ~~~~~~~~~~~~~-~~~~~~~~~-~~~~N~gf~G~Pl~~~~~G~~~~~~~~~a~~~-~~~~~~~~~~g~~~~~~~~~~~~ 158 (314)
T PRK09903 82 SWFGCYKFFKRTH-AEAAVCALI-AGSPTIGFLGFAVLDPIYGDSVSTGLVVAIIS-IIVNAITIPIGLYLLNPSSGADG 158 (314)
T ss_pred HHHHHHHHhcCCc-chhhHhhhh-hcCCCcccccHHHHHHHcCchhhhhhHHHHHH-HHHHHHHHHHHHHHHcccccccc
Confidence 777665 344443 333344455 678999999999999999998 55555554 45788899999998874322100
Q ss_pred CcccccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C
Q 035534 162 SKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E 240 (291)
Q Consensus 162 ~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~ 240 (291)
+.+ ..++.+++++|||+++|+++|++++.+ |+++|+++.++++++|++++|++|+++| +
T Consensus 159 -------------~~~---~~~~~l~~~~~nP~iia~~~gl~~~l~----~i~lP~~i~~~l~~lg~~~~PlaL~~iG~~ 218 (314)
T PRK09903 159 -------------KKN---SNLSALISAAKEPVVWAPVLATILVLV----GVKIPAAWDPTFNLIAKANSGVAVFAAGLT 218 (314)
T ss_pred -------------ccc---hHHHHHHHHHhchHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111 134667889999999999999999999 9999999999999999999999999999 7
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534 241 LGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT 291 (291)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~ 291 (291)
+.....+. .++.+.....|+++.|++++.++..+++|+.+.+++++++|+
T Consensus 219 L~~~~~~~-~~~~~~~~~~Kli~~P~i~~~~~~~~~l~~~~~~v~vl~aa~ 268 (314)
T PRK09903 219 LAAHKFEF-SAEIAYNTFLKLILMPLALLLVGMACHLNSEHLQMMVLAGAL 268 (314)
T ss_pred Hhhccccc-cHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHcc
Confidence 65444333 356778889999999999999999999999999999999986
No 3
>COG0679 Predicted permeases [General function prediction only]
Probab=100.00 E-value=2.4e-37 Score=279.83 Aligned_cols=261 Identities=21% Similarity=0.345 Sum_probs=223.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc-chhhHHHHHHHHHHHHHH
Q 035534 7 VYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-NYRFIGADAISKLIIVIV 85 (291)
Q Consensus 7 ~~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~-~~~~i~~~~~~~~i~~~~ 85 (291)
++.+++.++|+++++++||+++| .+.+|++..+.++++++|+++||++|+++.+.+.++. ++..+...+.+.+..++.
T Consensus 2 ~~~~~~~vlpi~lii~lGy~~~r-~~~~~~~~~~~ls~lv~~~~lP~LlF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (311)
T COG0679 2 MMIVFEVVLPIFLIILLGYLLKR-FGILDEEAARGLSRLVVYVALPALLFNSIATADLSGLADLGLIVASLVATLLAFFL 80 (311)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-hcccCHHHHHHHHHHHHHHHhHHHHHHHHHhCCcchhhhHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999966 8999999999999999999999999999999997765 677777777777777788
Q ss_pred HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCccc
Q 035534 86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDL 165 (291)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (291)
.+.+.|+.++++++++.....+ +.++|++++|+|+....||++++.++++++..+++..++++.+.++..+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~-~~~~N~g~lg~pi~~~~~G~~gl~~~~i~~~~~~~~~~~~g~~~l~~~~~~------ 153 (311)
T COG0679 81 LALIGRFLFKLDKRETVIFALA-SAFPNIGFLGLPVALSLFGEKGLAYAVIFLIIGLFLMFTLGVILLARSGGG------ 153 (311)
T ss_pred HHHHHHHHhccchhhHHHHHHH-HHhcccchhhHHHHHHHcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCC------
Confidence 7777776544432334344445 899999999999999999999999999999999999999999999865432
Q ss_pred ccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCcc
Q 035534 166 EEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEK 244 (291)
Q Consensus 166 ~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~ 244 (291)
+. +..++..+++++||+++|.++|++++.. ++++|+.+.++.++++++++|++|+++| +++.+
T Consensus 154 ---------~~---~~~~~~~~~~~~nP~i~a~i~g~~~~~~----~i~lP~~~~~~~~~l~~a~~pl~li~lG~~L~~~ 217 (311)
T COG0679 154 ---------TN---KSLLSVLKKLLTNPLIIALILGLLLNLL----GISLPAPLDTAVDLLASAASPLALIALGLSLAFL 217 (311)
T ss_pred ---------ch---hHHHHHHHHHHhCcHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHHhhhhHHHHHHhhhcchh
Confidence 11 2257788999999999999999999999 9999999999999999999999999999 88774
Q ss_pred ccc-cchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534 245 LLA-CGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT 291 (291)
Q Consensus 245 ~~~-~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~ 291 (291)
..+ ...+........|+++.|++++.+..++|++++..++.++++|+
T Consensus 218 ~~~~~~~~~~~~~~~~kll~~Pl~~~~~~~~~~l~~~~~~v~vl~~a~ 265 (311)
T COG0679 218 KLKGSKPPIILIALSLKLLLAPLVALLVAKLLGLSGLALQVLVLLSAM 265 (311)
T ss_pred hhccccchhHHHHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHhhC
Confidence 334 33445556666699999999999999999999999999999875
No 4
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=100.00 E-value=3.1e-35 Score=274.00 Aligned_cols=280 Identities=24% Similarity=0.345 Sum_probs=212.8
Q ss_pred HHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCC-CCCc-chhhHHH-HHHHHHHHHHH
Q 035534 9 KVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVD-PFNM-NYRFIGA-DAISKLIIVIV 85 (291)
Q Consensus 9 ~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~-~~~~-~~~~i~~-~~~~~~i~~~~ 85 (291)
+++++++|+++++++||+++| +|++++++.+.++++++|+++||++|.++++.+ .++. +++.+.. ..+...+.+++
T Consensus 1 ~v~~~i~~i~~ii~~G~~~~~-~~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (385)
T PF03547_consen 1 TVFSAILPIFLIILLGYLLGR-FGILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDLLSLWFIPVFAFIIFILGLLL 79 (385)
T ss_pred CcHHHHHHHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHH
Confidence 467899999999999999976 699999999999999999999999999999875 3333 5554433 33445556666
Q ss_pred HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCC---
Q 035534 86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDS--- 162 (291)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 162 (291)
++++.|+.+.++ .++...... ++++|++++|+|+++++||+++..|+.+++.+++++.|+++..+++..++++++
T Consensus 80 ~~~~~~~~~~~~-~~~~~~~~~-~~~~N~~~lglpi~~~l~g~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~~~~~~~ 157 (385)
T PF03547_consen 80 GFLLSRLFRLPK-EWRGVFVLA-ASFGNTGFLGLPILQALFGERGVAYAIIFDVVNNIILWSLGYFLLESRSEKEDKSEE 157 (385)
T ss_pred HHHHHHhcCCCc-ccceEEEec-ccCCcchhhHHHHHHHHhcchhhhhehHHHHhhHHHHHHHHHHhhcccccccccccc
Confidence 677778666554 222322233 789999999999999999999999999999999999999999998764432110
Q ss_pred -cc--------ccc-------C-C--------CCCC-----------------C---C------------CchhhHHHHH
Q 035534 163 -KD--------LEE-------G-H--------VTSS-----------------S---R------------PPFWHLMKVV 185 (291)
Q Consensus 163 -~~--------~~~-------~-~--------~e~~-----------------~---~------------~~~~~~~~~~ 185 (291)
++ .+| + + +|++ + + ...++..++.
T Consensus 158 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (385)
T PF03547_consen 158 EPSSAESIDSEQEDSDEMSLDGSSPSSTEEEIDEDGSPSSTPSQSSASAPSSVSTSPSPSNSTGAEQKSSNSTRKKLKKS 237 (385)
T ss_pred cccccccccccccCCccccCCcccccccccccccCCcccccccccccccchhhccCCcccccchhhhhhhhhHHHHHHHH
Confidence 00 000 0 0 0000 0 0 0112234556
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccc--cccchhHHHHHHHHHHH
Q 035534 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKL--LACGPGLTALGMVLKFI 262 (291)
Q Consensus 186 ~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~--~~~~~~~~~~~~~~rli 262 (291)
+++.++||+++|.++|+++++.++..+..+|+++.++++++|++++|++|+++| .+.... ....++.....++.|++
T Consensus 238 ~~~~~~nP~~~a~~lgli~~~~~~~~~~~~~~~i~~~~~~lg~~~~pl~l~~lG~~l~~~~~~~~~~~~~~~~~~~~rli 317 (385)
T PF03547_consen 238 ILKLFKNPPLIAIILGLIIGLIPPLRPLFFPSFITDSLSYLGAAAVPLALFVLGASLARGPRKSALGWKPSIIAVLVRLI 317 (385)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHhcccchHhHHHHHHHHHHhhhHHHHHHHHHHHHhcCCcccchhhHHHHHHHHHHHH
Confidence 788899999999999999999944444445599999999999999999999999 654322 23456666678999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534 263 AGPAAMAIGSIAAGLHGDVLRVSIIQVTT 291 (291)
Q Consensus 263 l~Pli~~~~~~~~~l~~~~~~v~vl~aa~ 291 (291)
+.|++++++++.+++++...++.++++++
T Consensus 318 i~P~i~~~~~~~~~l~~~~~~~~~~~~~~ 346 (385)
T PF03547_consen 318 ILPLIGIGIVFLLGLDGDMARVLILQAAM 346 (385)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhccC
Confidence 99999999999999999999999888764
No 5
>KOG2722 consensus Predicted membrane protein [Function unknown]
Probab=99.88 E-value=3.7e-23 Score=183.39 Aligned_cols=260 Identities=14% Similarity=0.149 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHHhHhhhhh-ccccChhhhhHHHHHHHHHHhHHHHHHHhccC-CCCCc-chhhHHHH-HHHHHHHHHHHH
Q 035534 12 VAMVPLYFALMLGYGSVKW-WKIIAPEECAAINRLVCYFTLPLFTIEFTTHV-DPFNM-NYRFIGAD-AISKLIIVIVLA 87 (291)
Q Consensus 12 ~~vlpi~lii~~G~~~~k~-~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~-~~~~~-~~~~i~~~-~~~~~i~~~~~~ 87 (291)
..++.++++..+|+++++. -++++++++|.+|+++++++.||++|..+++. +++++ +||+++.. .+...+..+++|
T Consensus 15 ~pvlqvl~i~~~G~~lA~~~~~lLp~dark~ln~Lvf~lFtPcLiFs~La~svtl~~ii~~wfiPVnv~Lt~~ig~liG~ 94 (408)
T KOG2722|consen 15 MPVLQVLLITLVGFLLASDYVNLLPRDARKLLNKLVFYLFTPCLIFSKLAQSVTLEKIIQWWFIPVNVGLTFIIGSLIGW 94 (408)
T ss_pred ccHHHHHHHHHHHHHHhccccCcCCHHHHHHhhheeeeeecHHHHHHHHhhhccHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 4677888999999988762 38999999999999999999999999999988 66666 99999776 456678888999
Q ss_pred HHHHHhcCCcccchhhhhccccccccccchhHHHHHHh-------hcc------chhhHHHHHHHHHHHHHHHHHHHHHh
Q 035534 88 FWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAM-------YGQ------MAVDLVVQSSVFQSIVWLTIFLFVLE 154 (291)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l-------~G~------~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (291)
++.|+.|.+++.+..+ .+||.++|.+.+.+-++.++ ||+ .|+.|+........+..||+++-++.
T Consensus 95 lv~~I~rppp~~~~fi--ia~~a~GN~gnlpL~Lv~alc~~~~~Pfg~~~~c~s~Gi~Y~sf~~~lg~il~wty~Y~~~~ 172 (408)
T KOG2722|consen 95 LVVKILRPPPQLRGFI--IACCAFGNSGNLPLILVPALCDEDGIPFGNREKCASRGISYVSFSQQLGQILRWTYVYRMLL 172 (408)
T ss_pred HHhheecCChhhcCeE--EEEeecCCcCCcHHHHhHHHhcccCCCCCChhhhhhcchhHHHHHHHhhhhEEEEEEeeeec
Confidence 9999888766333332 34589999999999999988 453 58999999988888888998885332
Q ss_pred hcccC------CC----C------cccccCCCC-----------------C-CC-CCchh---hHHHHHHHHHhhchhHH
Q 035534 155 FRRSG------ND----S------KDLEEGHVT-----------------S-SS-RPPFW---HLMKVVWLKLAKNPNSY 196 (291)
Q Consensus 155 ~~~~~------~~----~------~~~~~~~~e-----------------~-~~-~~~~~---~~~~~~~~~~~~nP~~i 196 (291)
..+.. ++ . +..|+|++| + .+ +..++ -..+..++. +.+|+++
T Consensus 173 ~p~~~~~~~~~~~~Ve~~~~~~~~~s~e~~~~~~~k~~ll~~~en~~~~~~g~~~~~~~~~~~~~~~~~L~~-i~~Ppti 251 (408)
T KOG2722|consen 173 PPNLELMSALKESPVEALLESVPQPSVESDEDSTCKTLLLASKENRNNQVVGREGKVKRRSVSLSEKVILKE-IFAPPTI 251 (408)
T ss_pred CCchhhhhcCChhhhhhhhhccCCCCcccccccccccccccccccCCCceeeccccceEEEeehhHHhhHHH-hcCchHH
Confidence 11000 00 0 000111100 0 00 11111 012334445 4699999
Q ss_pred HHHHHHHHHHhhhhcC----CC-cchhHHHHHHHHHhhhhHHHHHHhc-Cc--CccccccchhHHHHHHHHHHHHHHHHH
Q 035534 197 ACVIGLAWAFVANRWH----FK-LPSIIEGSILIMSKAGTGTAMFSMG-EL--GEKLLACGPGLTALGMVLKFIAGPAAM 268 (291)
Q Consensus 197 a~ilGl~l~~~~~~~~----~~-lP~~i~~~l~~l~~~~~plaL~~iG-~l--~~~~~~~~~~~~~~~~~~rlil~Pli~ 268 (291)
|.++|+++...++.++ -. .-.+++++++++|+.++|+.++++| .+ ..++...+.+.+...++.|+++.|.+.
T Consensus 252 a~iiA~vigai~pLr~lifg~~apl~~itdsv~llG~~~IP~illvLGgnL~~g~~ss~~~~~~iigiii~R~illP~~g 331 (408)
T KOG2722|consen 252 AAIIALVIGAIPPLRRLIFGEDAPLRVITDSVTLLGDGAIPCILLVLGGNLIQGLRSSALKTSVIIGIIIGRYILLPLVG 331 (408)
T ss_pred HHHHHHHHhcchHHHHHhhccCchHHHHHHHHHHhccccchhhhhhhccccccCchhcccCceEEEEEEEeeeeccchhh
Confidence 9999999999876221 12 2258999999999999999999999 54 233333445567778899999999999
Q ss_pred HHHHHH
Q 035534 269 AIGSIA 274 (291)
Q Consensus 269 ~~~~~~ 274 (291)
+++...
T Consensus 332 l~iv~~ 337 (408)
T KOG2722|consen 332 LGIVRL 337 (408)
T ss_pred HHHHHH
Confidence 887543
No 6
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=97.79 E-value=0.0033 Score=56.55 Aligned_cols=248 Identities=12% Similarity=0.011 Sum_probs=124.9
Q ss_pred HHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHH---hccCCCCCcchhhHHHHHHHHHHHHHHHHH-HHH
Q 035534 16 PLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEF---TTHVDPFNMNYRFIGADAISKLIIVIVLAF-WSM 91 (291)
Q Consensus 16 pi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~---i~~~~~~~~~~~~i~~~~~~~~i~~~~~~~-~~~ 91 (291)
|..+...+|.+++. .| -|-+.-+.+.+.+--+.+=+.=++. +.+.+..++-+.......++.++- +.++. +.|
T Consensus 1 P~vLFF~LG~~A~~-~k-SdL~iP~~i~k~lsiyLLlaIGlkGG~~l~~~~~~~~~~~~~~~~~lg~liP-l~~~~iLr~ 77 (327)
T PF05982_consen 1 PVVLFFILGIIAAL-LK-SDLEIPEAIYKFLSIYLLLAIGLKGGVELAHSGLTALLLPLLAAVLLGILIP-LIAFPILRR 77 (327)
T ss_pred CchHHHHHHHHHHH-Hc-CCCcCChhHHHHHHHHHHHHHhcccHHHHHcCCHHHHHHHHHHHHHHHHHHH-HHHHHHHHH
Confidence 44566677776643 33 2333334455555444444444443 222222211112222222333332 33333 344
Q ss_pred HhcCCcccchhhhhccccccccccchhHHHHHHhhccchh---hHHHHHHHHHHHHHHHHHHHHHhhcccCCCCc-cccc
Q 035534 92 CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAV---DLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSK-DLEE 167 (291)
Q Consensus 92 ~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 167 (291)
+.|-++ .|.. +.+ +.|+...-..+-...+..-++++ .|...+....+...-.++..+.+..+.++.++ +.++
T Consensus 78 ~~~l~~-~daa--AiA-AhYGSVSavTF~~a~~~L~~~gi~yeg~m~a~~alME~PAIival~L~~~~~~~~~~~~~~~~ 153 (327)
T PF05982_consen 78 LGKLDR-ADAA--AIA-AHYGSVSAVTFAAALAFLESQGISYEGYMVALLALMESPAIIVALLLARLFSRKQAAGATASS 153 (327)
T ss_pred ccCCCh-hhHH--HHH-HHcCchHHHHHHHHHHHHHHCCCCccccHHHHHHHHhhhHHHHHHHHHHHHhccccccccCCc
Confidence 445544 3322 233 56666666666666666544443 44555555556566667777765433221111 1111
Q ss_pred CCCC---CCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCC-cchhHHHHHHHHHhhhhHHHHHHhc-C--
Q 035534 168 GHVT---SSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFK-LPSIIEGSILIMSKAGTGTAMFSMG-E-- 240 (291)
Q Consensus 168 ~~~e---~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~iG-~-- 240 (291)
++.| ++++.+ +++.++..++|+.++..+.|+++.+. .-+ =-+.++.....+=+....+-|+-+| .
T Consensus 154 ~~~~~~~~~~~~~----~~~~l~E~l~~~sv~LLlGgliIG~~----~g~~g~~~i~pf~~~lF~G~L~lFLLeMGl~A~ 225 (327)
T PF05982_consen 154 TRVGAGSGHEGIS----WGELLHESLTNKSVVLLLGGLIIGFL----AGPEGVESIKPFFVDLFKGVLCLFLLEMGLVAA 225 (327)
T ss_pred ccccccccccccc----HHHHHHHHHcCchHHHHHHHHHHhhe----eCccchhhccchhhccHHHHHHHHHHHhhHHHH
Confidence 1111 112223 67889999999999999999999876 221 1123444555555666777888888 2
Q ss_pred cCccccccchhHHHHHHHHHHHHHHHH----HHHHHHHhCCCchhh
Q 035534 241 LGEKLLACGPGLTALGMVLKFIAGPAA----MAIGSIAAGLHGDVL 282 (291)
Q Consensus 241 l~~~~~~~~~~~~~~~~~~rlil~Pli----~~~~~~~~~l~~~~~ 282 (291)
.+.++. |..-+..+.==+++|++ .+.+.+++|++.-..
T Consensus 226 ~rL~~l----~~~g~~li~Fgi~~Pli~a~ig~~lg~~~gls~Gg~ 267 (327)
T PF05982_consen 226 RRLRDL----RKVGWFLIAFGILMPLINALIGIGLGWLLGLSPGGA 267 (327)
T ss_pred HhhHHH----HhhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCCccH
Confidence 333333 33333334444566655 445566778775443
No 7
>COG3329 Predicted permease [General function prediction only]
Probab=97.60 E-value=0.014 Score=51.75 Aligned_cols=215 Identities=13% Similarity=0.055 Sum_probs=112.3
Q ss_pred HHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHH
Q 035534 16 PLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMC 92 (291)
Q Consensus 16 pi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~ 92 (291)
|..+....|.+..- .| -|-+.-+.+.+.+..+.+=|.=|+.=.+...+.+ -.+......++.++.+..-+.++|+
T Consensus 18 P~llFf~~Gmlia~-~k-sdl~iP~~i~~~lslyLL~aIG~kGGveir~snl~a~v~~~~~~~aL~~li~~ia~f~l~kl 95 (372)
T COG3329 18 PTLLFFILGMLIAA-FK-SDLEIPEAIYQALSLYLLLAIGFKGGVEIRNSNLTAMVLPVALGVALGFLIVFIAYFLLRKL 95 (372)
T ss_pred chHHHHHHHHHHHH-Hh-ccccCchHHHHHHHHHHHHHHhcccceeeecCCcchhHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 77888888887653 33 1222223344444444455555554333322222 2233333444555555555566676
Q ss_pred hcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHH---HHHHHHHHHHHHHHHHHHhh---cccC----C--
Q 035534 93 SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVV---QSSVFQSIVWLTIFLFVLEF---RRSG----N-- 160 (291)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~---~~~~----~-- 160 (291)
.+.+. .|+.-.+ +.|+...-..+.-..+..-+.++.|-. ...........-.+..+... ++.+ +
T Consensus 96 ~~vdt-vdaaA~a---g~yGsvS~~Tfaaa~t~Lee~giayeaym~A~lalMeiPallval~l~~~y~~~~k~s~aa~~~ 171 (372)
T COG3329 96 PKVDT-VDAAATA---GTYGSVSAVTFAAAVTFLEESGIAYEAYMPAMLALMEIPALLVALVLANIYLNDEKRSAAAEAH 171 (372)
T ss_pred cccch-HHHHHHH---hhccchhHHHHHHHHHHHHHcCccHHHHHHHHHHHhhchHHHHHHHHHHHHHhccccccccccc
Confidence 56554 4433322 566666666666666666554443322 22222222222233333221 1111 0
Q ss_pred CCccc-c---cCCCC-C-------C--CCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHH
Q 035534 161 DSKDL-E---EGHVT-S-------S--SRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIM 226 (291)
Q Consensus 161 ~~~~~-~---~~~~e-~-------~--~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l 226 (291)
+|+.. + ++++| + + +..+.+-..++.++..+.||.+...+.|+++.+. .|-+--+.+++..+-+
T Consensus 172 s~~~vA~~e~g~~~d~~ssr~~~~~~~~~ed~~v~~~ell~Esflnpal~lllggl~iGli---tGe~g~~vl~~F~~~l 248 (372)
T COG3329 172 SKQLVAAGEYGDQTDLASSRQEYLSPQWGEDNRVKIWELLQESFLNPALVLLLGGLAIGLI---TGEQGESVLKPFFDPL 248 (372)
T ss_pred cccchhhcccCchhhhhhhhhhhcccccCcccchhhHHHHHHHHcCchHHHHHHHHHHhhe---eccCchhhhhhhhHHH
Confidence 01000 0 11111 0 0 0111111256778889999999999999999887 3334445677788888
Q ss_pred HhhhhHHHHHHhc
Q 035534 227 SKAGTGTAMFSMG 239 (291)
Q Consensus 227 ~~~~~plaL~~iG 239 (291)
=+....+-|+.+|
T Consensus 249 FqGvL~lflL~MG 261 (372)
T COG3329 249 FQGVLCLFLLDMG 261 (372)
T ss_pred HHHHHHHHHHHHh
Confidence 8889999999999
No 8
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=96.96 E-value=0.22 Score=46.45 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHH
Q 035534 12 VAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISK 79 (291)
Q Consensus 12 ~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~ 79 (291)
..+-|..+.+.+|.++.- .|++|++......+.+..+.+|..++.-+.+.|+.+. ..+.+..++++.
T Consensus 23 ~~l~~~vl~~~~~~~lsn-lgli~~p~~s~~y~~v~~~~vPlai~LlLl~~Dlr~i~~~g~~~l~~F~~~~ 92 (378)
T PF05684_consen 23 KYLPGAVLCYLLGMLLSN-LGLIDSPASSPVYDFVWTYLVPLAIPLLLLSADLRRILRLGGRLLLAFLIGA 92 (378)
T ss_pred hhcCHHHHHHHHHHHHHH-CCCcCCCCcchHHHHHHHHHHHHHHHHHHHHccHHHHHHhhHHHHHHHHHHH
Confidence 445578888999999865 8988655567799999999999999999999997753 455665555544
No 9
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.91 E-value=0.013 Score=52.53 Aligned_cols=141 Identities=8% Similarity=0.010 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccC--CCCCcchhhHHHHHHHHHHHHH
Q 035534 7 VYKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV--DPFNMNYRFIGADAISKLIIVI 84 (291)
Q Consensus 7 ~~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~--~~~~~~~~~i~~~~~~~~i~~~ 84 (291)
+.+++.....+++=+.+|.+.+|+.+-+.+ ..+.+.++. .+.+=+.++..+... ++.+..+.......+-..+.|.
T Consensus 133 ~~~i~~~~~~v~vPl~lG~~~r~~~p~~~~-~~~~~~~~s-~~~l~liv~~~~~~~~~~i~~~~~~~~~~~~ll~~~~~~ 210 (286)
T TIGR00841 133 YLGIGLSLVAVLIPVSIGMLVKHKLPQIAK-IILKVGLIS-VFLLSVIIAVVGGINVENLATIGPLLLLVGILLPLAGFL 210 (286)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHH-HHHhCchHH-HHHHHHHHHHHHHhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 444444456667778889988543221111 111122211 122222333333222 1212234444444555667888
Q ss_pred HHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHH
Q 035534 85 VLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFLFV 152 (291)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
++|.++|..+.+. .|+...++. ++..|.+ +|+++....|+++....+..|.+.+++..-.++.+.
T Consensus 211 ~g~~~a~~~~l~~-~~~~t~~~~-~g~qN~~-lal~la~~~f~~~~a~~~~~~~v~~~~~~~~~a~~~ 275 (286)
T TIGR00841 211 LGYLLAKLAGLPW-ARCRTISIE-VGMQNSQ-LCSTIAQLSFSPEVAVPSAIFPLIYALFQLAFALLF 275 (286)
T ss_pred HHHHHHHHhCCCH-hhheeeeee-eecccHH-HHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8899998766554 233333454 6667887 999999999987666556666666655555544443
No 10
>TIGR00841 bass bile acid transporter. Functionally characterized members of the BASS family catalyze Na+:bile acid symport. These systems have been identified in intestinal, liver and kidney tissues of animals. These symporters exhibit broad specificity, taking up a variety of non bile organic compounds as well as taurocholate and other bile salts. Functionally uncharacterised homologues are found in plants, yeast, archaea and bacteria.
Probab=96.36 E-value=0.0084 Score=53.82 Aligned_cols=64 Identities=17% Similarity=0.039 Sum_probs=52.9
Q ss_pred hhhhHHHHHHhc-CcCcccccc---chhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeeccC
Q 035534 228 KAGTGTAMFSMG-ELGEKLLAC---GPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVTT 291 (291)
Q Consensus 228 ~~~~plaL~~iG-~l~~~~~~~---~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa~ 291 (291)
-....++|+.+| +++.++.++ +.+........|++++|++++++...+++|+......++++++
T Consensus 11 ~~~l~~~m~~~G~~l~~~~~~~~~~~p~~~~~~~~~~~vi~Plla~~l~~~~~l~~~~~~glvL~~~~ 78 (286)
T TIGR00841 11 LILLFLIMFSMGCTLEFEDFKGHLRKPWGVIIGLLAQYGIMPLTGFLLAKVFKLPPELAVGVLIVGCC 78 (286)
T ss_pred HHHHHHHHHHccCCCcHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHheeeC
Confidence 344788999999 877665543 3456778888999999999999999999999999999998874
No 11
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=95.77 E-value=0.059 Score=49.34 Aligned_cols=97 Identities=13% Similarity=0.070 Sum_probs=64.4
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHH-HHHhhhhH------HHHHHhc-CcCcccc---ccchhHHHH
Q 035534 187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSIL-IMSKAGTG------TAMFSMG-ELGEKLL---ACGPGLTAL 255 (291)
Q Consensus 187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~-~l~~~~~p------laL~~iG-~l~~~~~---~~~~~~~~~ 255 (291)
+|......+.++++|++.... .|+.....-. ...+...| ..|+.+| +++.++. .+++|....
T Consensus 5 ~~~~~~~~~~~~i~~~~~g~~-------~P~~~~~~~~~~~~~~~~~~~~~l~~mmf~mgl~L~~~df~~~~~~pk~~~~ 77 (328)
T TIGR00832 5 ERYLTLWIFLAIAAGVGLGVL-------FPSVFQALAALEVATVSIPIAIGLILMMYPPLAKVDYSALGDVFKDPKGLIL 77 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHh-------ccccHHHHHHHHhhhhHHHHHHHHHHHHHHhhhcCCHHHHHHHHcCchHHHH
Confidence 344445567778888888665 4433222211 11223333 4678888 7765443 456788999
Q ss_pred HHHHHHHHHHHHHHHHHHHh-CCCchhhhhheeecc
Q 035534 256 GMVLKFIAGPAAMAIGSIAA-GLHGDVLRVSIIQVT 290 (291)
Q Consensus 256 ~~~~rlil~Pli~~~~~~~~-~l~~~~~~v~vl~aa 290 (291)
.....++++|+++++++..+ +.+++.+-..++.++
T Consensus 78 ~~~~qfvi~Plla~~l~~l~~~~~p~l~~GliLv~~ 113 (328)
T TIGR00832 78 SLFINWIIGPFLMFLLAWLFLRDLFEYIAGLILLGL 113 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 99999999999999999874 999887776666554
No 12
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=95.66 E-value=0.068 Score=48.35 Aligned_cols=78 Identities=15% Similarity=0.110 Sum_probs=56.0
Q ss_pred CCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCcccc---ccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhhee
Q 035534 212 HFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLL---ACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSII 287 (291)
Q Consensus 212 ~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~---~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl 287 (291)
....|+.....-. .-.....+.+|..| +++.++. .+++|........-++++|++++++++++++|++...-.++
T Consensus 26 ~~~~~~~~~~~~~-~~~~~l~lImf~mGl~Ls~~d~~~~~~~p~~vligl~~qfvlmPlla~~~~~~~~l~~~l~~Gl~l 104 (319)
T COG0385 26 APIFPETFGWLGS-AIPIALALIMFGMGLTLSREDFLAGLKHPRLVLIGLAAQFVLMPLLALLLAKLFPLPPELAVGLLL 104 (319)
T ss_pred HHhccccchhhhH-HHHHHHHHHHHhcCCCCCHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHhHHh
Confidence 3334554333222 22566667777778 6654443 46788899999999999999999999999999998877766
Q ss_pred ecc
Q 035534 288 QVT 290 (291)
Q Consensus 288 ~aa 290 (291)
..+
T Consensus 105 l~~ 107 (319)
T COG0385 105 LGC 107 (319)
T ss_pred eee
Confidence 543
No 13
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=95.65 E-value=2 Score=40.44 Aligned_cols=254 Identities=11% Similarity=0.039 Sum_probs=133.7
Q ss_pred hHhhhhhccccChhhhhHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhcC
Q 035534 24 GYGSVKWWKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMCSKK 95 (291)
Q Consensus 24 G~~~~k~~~~l~~~~~~~l~~lv-----~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~~~~ 95 (291)
...+.. +++++++..+..+++. .|+..-+++--|+...|++-+ -.++++..+.+....++++.+...+...
T Consensus 69 ps~Lv~-~~~ip~~~~~~v~~fm~~~~Fl~ffIa~LI~GSILgm~RklLika~~r~~p~il~g~~~a~~~g~lvG~l~G~ 147 (414)
T PF03390_consen 69 PSALVY-FGLIPESVVEAVTNFMKGSNFLYFFIAALIVGSILGMNRKLLIKAFARFIPPILGGVIGAFLLGGLVGMLFGY 147 (414)
T ss_pred HHHHHH-cCCCCHHHHHHHHHHhccCChHHHHHHHHHHhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 333334 6999999888888876 578889999999999986633 3467677777777777777777777665
Q ss_pred Ccccchhhhh-c-cccccccccchhHHHHH-HhhccchhhH---HHHHHHHHHHHHHHHHHHHHhhcccC---CCCccc-
Q 035534 96 GSYFSWCITN-F-SLCTLTNTLVLGVPLMK-AMYGQMAVDL---VVQSSVFQSIVWLTIFLFVLEFRRSG---NDSKDL- 165 (291)
Q Consensus 96 ~~~~~~~i~~-~-~~~~~~N~~~~G~Pi~~-~l~G~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~- 165 (291)
+. .|....- . ..+.-.+.|.+++...+ ...|++.-.+ ..-.....|++.-..+-.+-...+.. +.+.+.
T Consensus 148 ~~-~~~i~~i~lPIMgGG~GaGavPLS~~Ya~~~g~~~~~~~s~~ipa~~lgNi~AIi~aglL~~lg~~~P~ltGnG~L~ 226 (414)
T PF03390_consen 148 SF-KDAIFYIVLPIMGGGMGAGAVPLSQIYAEALGQDAEEYFSQLIPALTLGNIFAIIFAGLLNKLGKKKPKLTGNGQLL 226 (414)
T ss_pred CH-HHHHHHHHhhhcCCCccccHhHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCceEE
Confidence 54 3322111 1 11333345555555444 2344432222 22222222322221111111111110 011111
Q ss_pred -----ccC-CCCCCCCCchhhH------------HHHHHHHHhh-chhHHHHHHHHHHHHhhhhcCCCcch----hHHHH
Q 035534 166 -----EEG-HVTSSSRPPFWHL------------MKVVWLKLAK-NPNSYACVIGLAWAFVANRWHFKLPS----IIEGS 222 (291)
Q Consensus 166 -----~~~-~~e~~~~~~~~~~------------~~~~~~~~~~-nP~~ia~ilGl~l~~~~~~~~~~lP~----~i~~~ 222 (291)
+++ ++|++++.+.++. ....+.+.+. .++.+.+++..+++.+ ++ +|+ ...+.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~g~Gllla~~~y~~G~ll~~~i~ih~~a~mIi~~~i~K~~----~l-vP~~~e~~a~~~ 301 (414)
T PF03390_consen 227 KGGDDEEEEAKKKEKPIDFSDMGAGLLLACSFYILGVLLSKLIGIHAYAWMIILVAIVKAF----GL-VPESLEEGAKQW 301 (414)
T ss_pred eCCccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHH
Confidence 111 1112222221111 1223334443 3467788888888877 54 444 44556
Q ss_pred HHHHHhhhhHHHHHHhc-C-cCccccccchhHHH-HHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 035534 223 ILIMSKAGTGTAMFSMG-E-LGEKLLACGPGLTA-LGMVLKFIAGPAAMAIGSIAAGLHGDVLRV 284 (291)
Q Consensus 223 l~~l~~~~~plaL~~iG-~-l~~~~~~~~~~~~~-~~~~~rlil~Pli~~~~~~~~~l~~~~~~v 284 (291)
-++..+..++..|+.+| + .++++......... ..++.-.+-.-+.+..+.+++|+-|.+...
T Consensus 302 ~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YPvEsAI 366 (414)
T PF03390_consen 302 YKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYPVESAI 366 (414)
T ss_pred HHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 67788889999999999 6 66655433332222 233333344444556667888888776543
No 14
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=94.57 E-value=3.7 Score=37.75 Aligned_cols=247 Identities=12% Similarity=0.071 Sum_probs=130.8
Q ss_pred ccccChhhhhHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Q 035534 31 WKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWC 102 (291)
Q Consensus 31 ~~~l~~~~~~~l~~lv-----~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (291)
+++++++..+..+++. .|+..-|++--|+...|++-+ -.++++..+++....++.+.+...+...+. +|..
T Consensus 6 ~~~~p~~~~~~~~~fm~~~~Fl~fyIa~LI~GSIL~m~Rk~Lik~~~r~~p~il~g~~~a~~~g~lvG~l~G~~~-~~~~ 84 (347)
T TIGR00783 6 YNILPQNVIDATSNFMKGSNFLYLYIACLIVGSILGMNRKLLLKALMRFIPPALIGMVLAVIVGILVGTLFGLGF-DHSL 84 (347)
T ss_pred eCCCCHHHHHHHHHHHccCChHHHHHHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCH-hHhh
Confidence 5889999888888753 578889999999999986633 245666666666666666666777665544 2322
Q ss_pred hhh-c-cccccccccchhHHHHHH-hhccchhhHHH---HHHHHHHHHHHHHHHHHHhhcc-----cCCCC----ccccc
Q 035534 103 ITN-F-SLCTLTNTLVLGVPLMKA-MYGQMAVDLVV---QSSVFQSIVWLTIFLFVLEFRR-----SGNDS----KDLEE 167 (291)
Q Consensus 103 i~~-~-~~~~~~N~~~~G~Pi~~~-l~G~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-----~~~~~----~~~~~ 167 (291)
..- . ..+.-.+.|..++...++ ..|++.-.|.. -.....|++.-..+-.+-...+ +|+.+ ++.|+
T Consensus 85 ~~i~lPIm~GG~GaGavPLS~~Y~~~~g~~~~~~~s~~ip~~~igni~AIi~agll~~lG~~~p~ltG~G~L~~~~~~~~ 164 (347)
T TIGR00783 85 MYIVMPIMAGGVGAGIVPLSIIYSAITGRSSEEIFSQLIPAVIIGNIFAIICAGLLSRIGKKRPKLNGHGELVRSEKRED 164 (347)
T ss_pred heeeehhcCCCcccchhhHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcCCCceEeecCCcch
Confidence 111 1 113434567777766665 56665433333 2222222222111111111100 11111 11111
Q ss_pred --CCCCC-CCCCchhhH------------HHHHHHHHh--hchhHHHHHHHHHHHHhhhhcCCCcchhHHHHH----HHH
Q 035534 168 --GHVTS-SSRPPFWHL------------MKVVWLKLA--KNPNSYACVIGLAWAFVANRWHFKLPSIIEGSI----LIM 226 (291)
Q Consensus 168 --~~~e~-~~~~~~~~~------------~~~~~~~~~--~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l----~~l 226 (291)
+++|+ +.+.+.++. ....+ +.+ -+++.+.++++.+++.+ ++- |+-+.+-. ++.
T Consensus 165 ~~~~~~~~~~~~~~~~~g~Gl~~a~~~y~~g~l~-~~~~~Ih~~v~mII~~vi~k~~----gll-p~~i~~~a~~~~~F~ 238 (347)
T TIGR00783 165 AEKAKEITEIKIDVKLMGSGVLFAVALFMAGGLL-KSFPGIPAYAFMILIAAALKAF----GLV-PKEIEEGAKMLSQFI 238 (347)
T ss_pred hhhccccccCCCCHHHHHHHHHHHHHHHHHHHHH-HhcccCCHHHHHHHHHHHHHHh----CCC-CHHHHHHHHHHHHHH
Confidence 11111 111221111 11111 222 37899999999999988 664 43343333 355
Q ss_pred HhhhhHHHHHHhc-C-cCccccccch-hHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 035534 227 SKAGTGTAMFSMG-E-LGEKLLACGP-GLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRV 284 (291)
Q Consensus 227 ~~~~~plaL~~iG-~-l~~~~~~~~~-~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v 284 (291)
....++..+..+| + .+++...... .+.....+.-.+-+-+..+.+.+++|+-|.+...
T Consensus 239 ~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~lvGKllG~YPiE~aI 299 (347)
T TIGR00783 239 SKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAFLGKLMGMYPVESAI 299 (347)
T ss_pred HHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHHHHHHhCCChHHHHH
Confidence 5677777788788 5 5655443333 3333344444444445556678888887776554
No 15
>PF01758 SBF: Sodium Bile acid symporter family; InterPro: IPR002657 This family of proteins are found both in prokaryotes and eukaryotes. They are related to the human bile acid:sodium symporters, which are transmembrane proteins functioning in the liver in the uptake of bile acids from portal blood plasma, a process mediated by the co-transport of Na+ []. In yeast, overexpression of the ACR3 gene confers an arsenite- but not an arsenate-resistance phenotype [].; GO: 0008508 bile acid:sodium symporter activity, 0006814 sodium ion transport, 0016020 membrane; PDB: 3ZUX_A 3ZUY_A.
Probab=94.07 E-value=0.095 Score=43.86 Aligned_cols=61 Identities=21% Similarity=0.159 Sum_probs=45.3
Q ss_pred hhHHHHHHhc-CcCccccc---cchhHHHHHHHHHHHHHHHHHHHHH-HHhCCCchhhhhheeecc
Q 035534 230 GTGTAMFSMG-ELGEKLLA---CGPGLTALGMVLKFIAGPAAMAIGS-IAAGLHGDVLRVSIIQVT 290 (291)
Q Consensus 230 ~~plaL~~iG-~l~~~~~~---~~~~~~~~~~~~rlil~Pli~~~~~-~~~~l~~~~~~v~vl~aa 290 (291)
...+.|+.+| +++.++.+ ++.|......+.+++++|++++++. ..++.++..+...+++++
T Consensus 3 ~l~~~mf~~gl~~~~~~l~~~~~~p~~l~~~l~~~~~i~Plla~~l~~~~~~~~~~~~~Gl~l~~~ 68 (187)
T PF01758_consen 3 LLFLMMFSMGLSLTFEDLRRVLRRPKLLLIGLLAQFLIMPLLAFGLAWLLLPLSPALALGLLLVAA 68 (187)
T ss_dssp HHHHHHHHHHHC--GGGGHHHHHSHHHHHHHHHHHHHHHHHHHHHHH-HHTT--HHHHHHHHHHHH
T ss_pred hhhHHHHHhhhcccHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 3457889999 87766654 4456677788999999999999998 889999998877777664
No 16
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=92.89 E-value=5.6 Score=36.04 Aligned_cols=51 Identities=20% Similarity=0.081 Sum_probs=37.6
Q ss_pred chh-HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc
Q 035534 192 NPN-SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA 247 (291)
Q Consensus 192 nP~-~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~ 247 (291)
-|. ++++++..+++.. ...|+.+.+.++.+++-..-++|..+| +.+.++.+
T Consensus 243 ~P~FvlgFl~~~~l~s~-----~~~~~~~~~~~~~~s~~~~~~A~aaiGl~~~~~~l~ 295 (305)
T PF03601_consen 243 FPWFVLGFLAASLLNSL-----GLLPAAVVSALKSLSKWLFALAMAAIGLSTNFKDLK 295 (305)
T ss_pred cCHHHHHHHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHH
Confidence 453 4455555555543 357788889999999999999999999 88776654
No 17
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=91.95 E-value=3.2 Score=37.78 Aligned_cols=136 Identities=15% Similarity=0.184 Sum_probs=69.9
Q ss_pred HHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccC---CC-CCcchhhHHH-HHHHH---HHHHHH
Q 035534 14 MVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHV---DP-FNMNYRFIGA-DAISK---LIIVIV 85 (291)
Q Consensus 14 vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~---~~-~~~~~~~i~~-~~~~~---~i~~~~ 85 (291)
...+++=..+|-+++|+.+-..+. .+...+.+-...+-.+++.++.+. +. ++.+...+.. ..+.. .+.+.+
T Consensus 164 ~~~vllP~~~Gq~~r~~~~~~~~~-~~~~~~~~~~~~ll~iv~~~fs~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~ 242 (313)
T PF13593_consen 164 VLTVLLPLVLGQLLRRWVPKWVAR-HKKPLSLLSQLALLLIVYSAFSSAFAQGAWHSVSAAALALIVAVSLLLLLVVLVL 242 (313)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhchhhhCCHHHHHHHHHHHHHHHHHHHHH
Confidence 345555667788885432211122 244455567777777777777665 21 1233322222 11111 223344
Q ss_pred HHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccc-hhhHHHHHHHHHHHHHHHHHHHHH
Q 035534 86 LAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM-AVDLVVQSSVFQSIVWLTIFLFVL 153 (291)
Q Consensus 86 ~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~-~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
.+..+|..+.++ +|+. ..+. |.-..+.-.|+|+...+|++. ..+.+.+=.+.....+.-++-.+.
T Consensus 243 ~~~~~r~~~~~~-~d~i-A~~F-~gs~Ksl~~gvpl~~~lf~~~~~~~~~~lP~~iyh~~Ql~~~s~la 308 (313)
T PF13593_consen 243 GWLAARLLGFSR-PDRI-AVLF-CGSQKSLALGVPLASILFPGHPDLGLIVLPLMIYHPLQLFVGSFLA 308 (313)
T ss_pred HHHHHhhcCCCh-hhEE-EEEE-EcCcCcchhHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHH
Confidence 466677665544 3322 2223 444788899999999999875 333333333333333333444443
No 18
>COG1346 LrgB Putative effector of murein hydrolase [Cell envelope biogenesis, outer membrane]
Probab=90.57 E-value=1.2 Score=38.35 Aligned_cols=97 Identities=10% Similarity=-0.013 Sum_probs=70.6
Q ss_pred HHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHH
Q 035534 186 WLKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFI 262 (291)
Q Consensus 186 ~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rli 262 (291)
.|+.+.||.+++.++.+.+-.. .+++..+ -..--+++....-| +..++. -.+++..+++|+++...+++=-+
T Consensus 28 ~~~~~l~PlLv~~~~li~~L~~---~~i~Y~~-Y~~g~~~i~~lLgP-AtVAlAvPLYkq~~~ik~~w~~I~~g~~vGs~ 102 (230)
T COG1346 28 TKSPFLNPLLVATVLLIAFLLL---FGISYED-YMKGGQWINFLLGP-ATVALAVPLYKQRHLIKRHWKPILAGVLVGSV 102 (230)
T ss_pred cCCcccchHHHHHHHHHHHHHH---cCCCHHH-HhcccHHHHHHHHH-HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556789999998877766553 3555544 34455666666666 677777 24556667889999988888888
Q ss_pred HHHHHHHHHHHHhCCCchhhhhhee
Q 035534 263 AGPAAMAIGSIAAGLHGDVLRVSII 287 (291)
Q Consensus 263 l~Pli~~~~~~~~~l~~~~~~v~vl 287 (291)
..-...+.+.+++|+|++..+...=
T Consensus 103 ~ai~s~~llak~~g~~~~~~~Sl~P 127 (230)
T COG1346 103 VAIISGVLLAKLFGLSPELILSLLP 127 (230)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHhcc
Confidence 8888889999999999988766543
No 19
>COG0385 Predicted Na+-dependent transporter [General function prediction only]
Probab=89.21 E-value=7.7 Score=35.27 Aligned_cols=132 Identities=12% Similarity=0.023 Sum_probs=69.9
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHHHH
Q 035534 15 VPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNMN--YRFIGADAISKLIIVIVLAFWSMC 92 (291)
Q Consensus 15 lpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~~--~~~i~~~~~~~~i~~~~~~~~~~~ 92 (291)
..+++=..+|-+++++.+-.-+ ..+..-..+-...+=+.++..++....+..+ .....+..+-..+.+.++|..+|+
T Consensus 168 ~~vllP~~LG~~~r~~~~~~~~-~~~~~l~~vs~~~illIv~~~~s~~~~~~~~~~~~v~~~v~~~n~lg~~~gy~~ar~ 246 (319)
T COG0385 168 LQVLLPFVLGQLLRPLLPKWVE-RLKKALPPVSVLSILLIVYAAFSAAVENGIWSGLLIFVAVILHNLLGLLLGYFGARL 246 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHhhhcchhhHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555667788888443221111 1223333444455555666666554322112 222233344556778888889998
Q ss_pred hcCCcccchhhhhccccccccccchhHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHH
Q 035534 93 SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYG-QMAVDLVVQSSVFQSIVWLTIFL 150 (291)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G-~~~~~~~~~~~~~~~~~~~~~~~ 150 (291)
.+.++ .|+...++. .+-.|. -.|.|+....++ +.......+|...|++..-.++.
T Consensus 247 ~g~~~-a~~iti~ie-~g~qn~-~lg~alA~~f~~~~~~alP~aif~~~q~~~~a~la~ 302 (319)
T COG0385 247 LGFDK-ADEITIAIE-GGMQNL-GLGAALAAAFFGNPLMALPLAIFSVWQNMSGAVLAG 302 (319)
T ss_pred hCCCh-hheeeEEEe-eccccH-HHHHHHHHhcCCCchhHhHHHHHHHHHHHHHHHHHH
Confidence 87665 222222332 454554 789999999556 34444555565555544433333
No 20
>TIGR00783 ccs citrate carrier protein, CCS family. These proteins are members of the Citrate:Cation Symporter (CCS) Family (TC 2.A.24). These proteins have 12 GES predicted transmembrane regions. Most members of the CCS family catalyze citrate uptake with either Na+ or H+ as the cotransported cation. However, one member is specific for L-malate and probably functions by a proton symport mechanism.
Probab=88.88 E-value=2.3 Score=39.16 Aligned_cols=100 Identities=10% Similarity=0.059 Sum_probs=63.7
Q ss_pred HHHHHHHhHhhhhhccccChhhh---hHHHHHHHHHHhHHHHH-HHhccCCCCCc----chhhHHHHHHHHHHHHHHHHH
Q 035534 17 LYFALMLGYGSVKWWKIIAPEEC---AAINRLVCYFTLPLFTI-EFTTHVDPFNM----NYRFIGADAISKLIIVIVLAF 88 (291)
Q Consensus 17 i~lii~~G~~~~k~~~~l~~~~~---~~l~~lv~~v~lP~lif-~~i~~~~~~~~----~~~~i~~~~~~~~i~~~~~~~ 88 (291)
...++.+|.++ |..|+++++.. +...+++.+..++.++. .+++..|++++ +++.+.....+.+...+.+++
T Consensus 207 ~v~mII~~vi~-k~~gllp~~i~~~a~~~~~F~~~~lt~~ll~giGla~t~l~~L~~a~t~~~vviiv~~Vlg~ii~s~l 285 (347)
T TIGR00783 207 YAFMILIAAAL-KAFGLVPKEIEEGAKMLSQFISKNLTWPLMVGVGVSYIDLDDLVAALSWQFVVICLSVVVAMILGGAF 285 (347)
T ss_pred HHHHHHHHHHH-HHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHcccccCCHHHHHHHhchhHhhhHHHHHHHHHHHHHH
Confidence 55677888888 55899997654 44665666656665555 57777776643 355554444455555666678
Q ss_pred HHHHhcCCcccchhhhh-ccccccccccchh
Q 035534 89 WSMCSKKGSYFSWCITN-FSLCTLTNTLVLG 118 (291)
Q Consensus 89 ~~~~~~~~~~~~~~i~~-~~~~~~~N~~~~G 118 (291)
.+|+.+-.+ -|..+.+ ++.+..+-+|.++
T Consensus 286 vGKllG~YP-iE~aItagLC~~~~GGtGDva 315 (347)
T TIGR00783 286 LGKLMGMYP-VESAITAGLCNSGMGGTGDVA 315 (347)
T ss_pred HHHHhCCCh-HHHHHHHhhhccCCCCCCcee
Confidence 899877655 5666665 3335556666554
No 21
>PF03601 Cons_hypoth698: Conserved hypothetical protein 698; InterPro: IPR018383 This entry represents a family of uncharacterised multi-pass membrane proteins.; GO: 0016021 integral to membrane
Probab=86.68 E-value=4.5 Score=36.67 Aligned_cols=89 Identities=16% Similarity=0.054 Sum_probs=62.4
Q ss_pred hhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHH
Q 035534 190 AKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAM 268 (291)
Q Consensus 190 ~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~ 268 (291)
--++.++|+++|++++-. -...|+....-++.-++-....+...+| +++..+....-.........-....=.+.
T Consensus 25 ~l~~~~~AillG~~i~n~----~~~~~~~~~~Gi~~~~k~~Lr~gIVLlG~~l~~~~i~~~G~~~~~~~~~~v~~~~~~~ 100 (305)
T PF03601_consen 25 GLGALLIAILLGMLIGNL----FFGLPARFKPGIKFSSKKLLRLGIVLLGFRLSFSDILALGWKGLLIIIIVVILTFLLT 100 (305)
T ss_pred CccHHHHHHHHHHHHhhh----ccCCcHHHHhHHHHHHHHHHHHHHHHHCccccHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence 347889999999999821 2578899999999999999999999999 88776544222222333333344444445
Q ss_pred HHHH-HHhCCCchhh
Q 035534 269 AIGS-IAAGLHGDVL 282 (291)
Q Consensus 269 ~~~~-~~~~l~~~~~ 282 (291)
+.+. +.+++|....
T Consensus 101 ~~lg~r~~~l~~~~~ 115 (305)
T PF03601_consen 101 YWLGRRLFGLDRKLA 115 (305)
T ss_pred HHHHHHHhCCCHHHH
Confidence 5556 8889986653
No 22
>PF13593 DUF4137: SBF-like CPA transporter family (DUF4137)
Probab=86.37 E-value=1.9 Score=39.27 Aligned_cols=91 Identities=19% Similarity=0.116 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcchhHHHHH--HHHHhhhhHHHHHHhc-CcCcccc---ccchhHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSI--LIMSKAGTGTAMFSMG-ELGEKLL---ACGPGLTALGMVLKFIAGP 265 (291)
Q Consensus 192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l--~~l~~~~~plaL~~iG-~l~~~~~---~~~~~~~~~~~~~rlil~P 265 (291)
|+.+++.++++.+... .|-|+.-.... +...+..+.+..+.-| +++.+.. .+++|........-+++.|
T Consensus 1 ~~fl~~l~~ai~la~~-----~P~~g~~~~~~~~~~~~~~~v~~iFf~~Gl~L~~~~l~~~~~~~~~~l~~~~~~fvl~P 75 (313)
T PF13593_consen 1 QWFLLGLLLAILLAYL-----FPAPGAAGGVIKPEYVIKYGVALIFFISGLSLPTEELKAALRNWRLHLFVQAFNFVLFP 75 (313)
T ss_pred CchHHHHHHHHHHHHH-----cCcccccCCccchhhhHHHHHHHHHHHHcCCCCHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence 4567788888888765 23333222222 2455666888999999 7765444 3577888888999999999
Q ss_pred HHHHHHHHHhC--CCchhhhhhee
Q 035534 266 AAMAIGSIAAG--LHGDVLRVSII 287 (291)
Q Consensus 266 li~~~~~~~~~--l~~~~~~v~vl 287 (291)
++++++..+.+ .+++.....++
T Consensus 76 ll~~~~~~l~~~~~~~~l~~Gl~~ 99 (313)
T PF13593_consen 76 LLGFGLSRLFPAFLPPELALGLLI 99 (313)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHH
Confidence 99999988874 45554444433
No 23
>COG5505 Predicted integral membrane protein [Function unknown]
Probab=85.52 E-value=28 Score=31.55 Aligned_cols=134 Identities=11% Similarity=0.033 Sum_probs=70.9
Q ss_pred HHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCC---cchhhHHHHHHHHH---HHHHHHH
Q 035534 14 MVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFN---MNYRFIGADAISKL---IIVIVLA 87 (291)
Q Consensus 14 vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~---~~~~~i~~~~~~~~---i~~~~~~ 87 (291)
..|-.+++-+|...--..|.++ ..+...+.+-|..+|++++.-+.+-|..+ +..+++..++++.+ +.+.+.+
T Consensus 31 ~Vpa~v~iy~gamff~t~Glfs--~~S~~y~~v~n~llpamI~lmLlqcd~Rki~Klg~rll~ifli~sv~~vlGfIl~y 108 (384)
T COG5505 31 AVPAAVIIYAGAMFFTTVGLFS--VESPVYDTVWNYLLPAMIPLMLLQCDVRKIFKLGRRLLFIFLISSVGTVLGFILAY 108 (384)
T ss_pred hhhHHHHHHHHHHHHhhccccc--ccCcHHHHHHHHHHHHHHHHHHHHccHHHHHhhcchhhHHHHHHHHHHHHHHHHHH
Confidence 3466666777764423478885 66778889999999999999999888664 34455444443332 3333333
Q ss_pred HHHHHhcCCcccchhhhhc-cccccccccchhHHHHHHhh--ccchhhHHHHHHHHHHHHHHHHHHHHHh
Q 035534 88 FWSMCSKKGSYFSWCITNF-SLCTLTNTLVLGVPLMKAMY--GQMAVDLVVQSSVFQSIVWLTIFLFVLE 154 (291)
Q Consensus 88 ~~~~~~~~~~~~~~~i~~~-~~~~~~N~~~~G~Pi~~~l~--G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (291)
..-|-...+. +...++ ..+--+ |-.-..-.++.+ +++..++....|.+.--+.+.+-.++..
T Consensus 109 p~~ksf~gd~---Wka~gmi~gSytG--GSaNmAAmqaaLeVP~~~fsatlaaDtv~ySll~~lli~iVp 173 (384)
T COG5505 109 PLLKSFIGDL---WKAGGMISGSYTG--GSANMAAMQAALEVPGEYFSATLAADTVMYSLLFFLLISIVP 173 (384)
T ss_pred HHHhhhcchH---HhhhhheeeeeeC--CcchHHHHHhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322111121 222222 211111 122233445554 3455566666666554444455555543
No 24
>PF04172 LrgB: LrgB-like family ; InterPro: IPR007300 The two products of the lrgAB operon are potential membrane proteins, and LrgA and LrgB are both thought to control murein hydrolase activity and penicillin tolerance [].
Probab=84.91 E-value=4.4 Score=34.77 Aligned_cols=94 Identities=12% Similarity=-0.013 Sum_probs=66.1
Q ss_pred HHHHhhchhHHHHHH-HHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C--cCccccccchhHHHHHHHHHH
Q 035534 186 WLKLAKNPNSYACVI-GLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E--LGEKLLACGPGLTALGMVLKF 261 (291)
Q Consensus 186 ~~~~~~nP~~ia~il-Gl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~--l~~~~~~~~~~~~~~~~~~rl 261 (291)
+++.+.||.+++.++ -.++... +++..+. .+.-+++....-|- ..+++ - .+.+..+++++++...+..=-
T Consensus 15 ~~~~~l~P~l~a~~~ii~~L~~~----~i~y~~Y-~~gg~~l~~lLgPa-tVALAvPLY~~~~~l~~~~~~il~~~~~g~ 88 (215)
T PF04172_consen 15 FKSPFLNPLLIAIVLIIAFLLLT----GIPYEDY-MQGGDILSFLLGPA-TVALAVPLYRQRRLLKKNWIPILVGVLVGS 88 (215)
T ss_pred cCCCcccHHHHHHHHHHHHHHHH----CCCHHHH-HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567999988776 3344444 6666554 34566665555553 67777 2 345556778888888888888
Q ss_pred HHHHHHHHHHHHHhCCCchhhhhh
Q 035534 262 IAGPAAMAIGSIAAGLHGDVLRVS 285 (291)
Q Consensus 262 il~Pli~~~~~~~~~l~~~~~~v~ 285 (291)
++.-...+.+++++|+|++.....
T Consensus 89 ~~~~~~~~~l~~~lgl~~~~~~Sl 112 (215)
T PF04172_consen 89 LVSIFSAVLLARLLGLSPEIILSL 112 (215)
T ss_pred HHHHHHHHHHHHHHCcCHHHHHHH
Confidence 888888899999999998876543
No 25
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=83.65 E-value=3.8 Score=37.03 Aligned_cols=85 Identities=14% Similarity=0.103 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 035534 195 SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSI 273 (291)
Q Consensus 195 ~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~ 273 (291)
++=.++|.+++-+-+.. .+.=...++.+..-+++...+-++|.| +++.|......|+-...+..|+++.-++.+.+.+
T Consensus 16 vVPLllgalinTf~P~~-l~~iG~fT~al~~G~~~iig~~l~~~Ga~I~~k~~~~~lkkg~~ll~~K~~~~~~lgl~~~~ 94 (314)
T PF03812_consen 16 VVPLLLGALINTFFPNA-LEIIGGFTTALFTGANPIIGVFLFCMGAQIDLKSAGKVLKKGGVLLLVKFIIGALLGLLVGK 94 (314)
T ss_pred HHHHHHHHHHHhcCCCh-hhccCcHHHHHHcchHHHHHHHHHHhccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 44455666666551100 010122344443456677788899999 8999888888889999999999999999999999
Q ss_pred HhCCCch
Q 035534 274 AAGLHGD 280 (291)
Q Consensus 274 ~~~l~~~ 280 (291)
++|-++.
T Consensus 95 ~fg~~Gi 101 (314)
T PF03812_consen 95 FFGPEGI 101 (314)
T ss_pred HcCcccc
Confidence 9988864
No 26
>PRK10711 hypothetical protein; Provisional
Probab=82.06 E-value=4.8 Score=34.90 Aligned_cols=95 Identities=6% Similarity=-0.082 Sum_probs=65.5
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHHH
Q 035534 187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIA 263 (291)
Q Consensus 187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rlil 263 (291)
++.+.||.+++.++-+.+-.. .+++..+. .+..+++.....| +..+++ -.+.+..|++++++...+.+=-++
T Consensus 27 ~~~~l~Pll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~I~~~~~vG~~v 101 (231)
T PRK10711 27 KFPLLNPLLVAMVVIIPFLLL---TGIPYEHY-FKGSEVLNDLLQP-AVVALAFPLYEQLHQIRARWKSIISICFIGSVV 101 (231)
T ss_pred CCCcccHHHHHHHHHHHHHHH---hCCCHHHH-HhccHHHHhhhhH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 556779998887655544432 26665554 4455666655544 344555 234556677888888888888888
Q ss_pred HHHHHHHHHHHhCCCchhhhhhe
Q 035534 264 GPAAMAIGSIAAGLHGDVLRVSI 286 (291)
Q Consensus 264 ~Pli~~~~~~~~~l~~~~~~v~v 286 (291)
.-...+.+++.+|+|++......
T Consensus 102 ~i~s~~~l~~~lg~~~~~~~Sl~ 124 (231)
T PRK10711 102 AMVTGTAVALWMGATPEIAASIL 124 (231)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHh
Confidence 88899999999999988776543
No 27
>PRK04288 antiholin-like protein LrgB; Provisional
Probab=81.69 E-value=6.7 Score=34.00 Aligned_cols=94 Identities=14% Similarity=-0.037 Sum_probs=64.2
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHHH
Q 035534 187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIA 263 (291)
Q Consensus 187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rlil 263 (291)
++.+.||.+++.++-+.+-.. .+++..+. .+--+++....-| +..+++ -.+.+..|++++++...+.+=-++
T Consensus 32 ~~~~lnPll~s~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~q~~~lk~~~~~Il~~~~vG~~~ 106 (232)
T PRK04288 32 GFFLFTPLFVAMVLGIAFLKL---TGISYEEY-NIGGDIISFFLEP-ATIAFAIPLYKKRDVLKKYWWQILGGIVVGSVC 106 (232)
T ss_pred CCcchhHHHHHHHHHHHHHHH---hCCCHHHH-HhhhHHHHHHHHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 445679998887765554432 25555544 4455555554444 344555 245566678888888888888888
Q ss_pred HHHHHHHHHHHhCCCchhhhhh
Q 035534 264 GPAAMAIGSIAAGLHGDVLRVS 285 (291)
Q Consensus 264 ~Pli~~~~~~~~~l~~~~~~v~ 285 (291)
.-...+.+++++|+|++.....
T Consensus 107 ~i~s~~~la~~lgl~~~~~~Sl 128 (232)
T PRK04288 107 SVLIIYLVAKLIQLDNAVMASM 128 (232)
T ss_pred HHHHHHHHHHHHCcCHHHHHHH
Confidence 8888999999999998876554
No 28
>COG2855 Predicted membrane protein [Function unknown]
Probab=79.72 E-value=50 Score=30.30 Aligned_cols=34 Identities=21% Similarity=0.251 Sum_probs=29.4
Q ss_pred CcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc
Q 035534 214 KLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA 247 (291)
Q Consensus 214 ~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~ 247 (291)
.+|+.+.+.++.++.-..-++|-++| ..+.+..+
T Consensus 271 ~iP~~~~~~~~~lst~ll~~aMaAlGL~t~i~~l~ 305 (334)
T COG2855 271 LIPAEVVSALVTLSTFLLAMAMAALGLTTHIKALK 305 (334)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHhccccCHHHHH
Confidence 48999999999999999999999999 77765543
No 29
>TIGR00844 c_cpa1 na(+)/h(+) antiporter. This model is specific for the fungal members of this family.
Probab=79.33 E-value=15 Score=37.77 Aligned_cols=85 Identities=16% Similarity=0.080 Sum_probs=57.2
Q ss_pred hchhHHHHHHHHHHHHhhhhcCCCcchhH-----HHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHH
Q 035534 191 KNPNSYACVIGLAWAFVANRWHFKLPSII-----EGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAG 264 (291)
Q Consensus 191 ~nP~~ia~ilGl~l~~~~~~~~~~lP~~i-----~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~ 264 (291)
-..+++++++|++++-. +.+..++. .....-+...+.++.+|..| .++.+..++.|+.++..++.=+.+.
T Consensus 38 Ls~~~v~Ll~GiilGP~----~l~~idP~~~g~~d~i~leIteIvL~I~LFa~Gl~L~~~~Lrr~wrsV~rLl~~~M~lT 113 (810)
T TIGR00844 38 IGESMVASIFGLIVGPH----CLNWFNPLSWGNTDSITLEISRILLCLQVFAVSVELPRKYMLKHWVSVTMLLVPVMTSG 113 (810)
T ss_pred CcHHHHHHHHHHHhhhh----hhccCChhhcccchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHHHHHHHHHHHH
Confidence 45678889999998765 33333222 12223388899999999999 9998888888887777766666665
Q ss_pred HHHHHHHHH-H-hCCCc
Q 035534 265 PAAMAIGSI-A-AGLHG 279 (291)
Q Consensus 265 Pli~~~~~~-~-~~l~~ 279 (291)
=+++.++++ + .|++.
T Consensus 114 ~livAL~a~~Li~GL~~ 130 (810)
T TIGR00844 114 WLVIALFVWILVPGLNF 130 (810)
T ss_pred HHHHHHHHHHHHcCCCH
Confidence 555555544 2 36664
No 30
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=79.18 E-value=52 Score=30.25 Aligned_cols=60 Identities=13% Similarity=0.070 Sum_probs=41.8
Q ss_pred chh-HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc-cchhHHHHH
Q 035534 192 NPN-SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA-CGPGLTALG 256 (291)
Q Consensus 192 nP~-~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~-~~~~~~~~~ 256 (291)
-|. +++++...+++-. + .+|+...+.++.+++-..-++|.++| ..+.+..+ ...|+....
T Consensus 251 ~P~FvlgFl~~~~l~S~----~-~lp~~~~~~l~~~~~~ll~~AmaaiGl~t~~~~l~~~G~kp~~~g 313 (335)
T TIGR00698 251 IPWFAVLFIGVAIFNSF----D-LLPGEVVQALVPLDTFLLATAMAALGLTTNVSAVKKAGVKPLFAS 313 (335)
T ss_pred CChHHHHHHHHHHHHHh----h-hCcHHHHHHHHHHHHHHHHHHHHHHhhcCcHHHHHHcCchHHHHH
Confidence 464 3455555555543 2 57888999999999999999999999 88776654 334554443
No 31
>TIGR00659 conserved hypothetical protein TIGR00659. Members of this small but broadly distibuted (Gram-positive, Gram-negative, and Archaeal) family appear to have multiple transmembrane segments. The function is unknown. A homolog, LrgB of Staphylococcus aureus, in the same small superfamily but in an outgroup to this subfamily, is regulated by LytSR and is suggested to act as a murein hydrolase. Of the three paralogous proteins in B. subtilis, one is a full length member of this family, one lacks the C-terminal 60 residues and has an additional 128 N-terminal residues but branches within the family in a phylogenetic tree, and one is closely related to LrgB and part of the outgroup.
Probab=77.51 E-value=8.5 Score=33.24 Aligned_cols=94 Identities=7% Similarity=-0.070 Sum_probs=62.5
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc---CcCccccccchhHHHHHHHHHHHH
Q 035534 187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG---ELGEKLLACGPGLTALGMVLKFIA 263 (291)
Q Consensus 187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG---~l~~~~~~~~~~~~~~~~~~rlil 263 (291)
++.+.||.+++.++-+.+-.. .+++..+. .+--+++....-| +..+++ -.+.+..+++++++...+.+=-++
T Consensus 26 ~~~~lnPvl~~~~~ii~~L~~---~~i~Y~~Y-~~g~~~l~~lLgP-AtVALAvPLY~~~~~lk~~~~~Il~~~~~G~~~ 100 (226)
T TIGR00659 26 KRPYLNPLLLTPLVLVGILLL---VGIPYESY-MLGGGVINDLLGP-AVVALAIPLYKQLPQIKKYWKEIILNVAVGSVI 100 (226)
T ss_pred CCccccHHHHHHHHHHHHHHH---hCCCHHHH-HHhhHHHHHhhHH-HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 566789999887765554432 25555444 4455555443333 445566 234555677788888888887788
Q ss_pred HHHHHHHHHHHhCCCchhhhhh
Q 035534 264 GPAAMAIGSIAAGLHGDVLRVS 285 (291)
Q Consensus 264 ~Pli~~~~~~~~~l~~~~~~v~ 285 (291)
.-...+.+++.+|+|++.....
T Consensus 101 ~~~s~~~la~~lg~~~~i~~Sl 122 (226)
T TIGR00659 101 AIISGTLLALLLGLGPEIIASL 122 (226)
T ss_pred HHHHHHHHHHHHCcCHHHHHHh
Confidence 8888889999999998776544
No 32
>KOG2532 consensus Permease of the major facilitator superfamily [Carbohydrate transport and metabolism]
Probab=75.54 E-value=17 Score=35.07 Aligned_cols=41 Identities=12% Similarity=0.045 Sum_probs=27.8
Q ss_pred HHHHHhhchhHHHHHHHHHHHHhhhh-cCCCcchhHHHHHHH
Q 035534 185 VWLKLAKNPNSYACVIGLAWAFVANR-WHFKLPSIIEGSILI 225 (291)
Q Consensus 185 ~~~~~~~nP~~ia~ilGl~l~~~~~~-~~~~lP~~i~~~l~~ 225 (291)
.+++++++|++||+.++-.....+.. .-...|..+.+.+++
T Consensus 250 P~~~i~ts~~vwai~~~~f~~~~~~~~l~~y~PtY~~~VL~f 291 (466)
T KOG2532|consen 250 PYKAILTSPPVWAIWISAFGGNWGFYLLLTYLPTYLKEVLGF 291 (466)
T ss_pred CHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCC
Confidence 47889999999999998877765221 122467666655543
No 33
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=72.84 E-value=73 Score=28.97 Aligned_cols=80 Identities=14% Similarity=0.021 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHH
Q 035534 194 NSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGS 272 (291)
Q Consensus 194 ~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~ 272 (291)
.++++++|+++.-. .-++|+...+-.+. .+|+.-+.+| .++.......-.......+.-.++.=.+.+.+.
T Consensus 169 lilpILiGmilGNl----d~~~~~~l~~Gi~f----~I~f~~f~LG~~lnl~~I~~~G~~GIlL~v~vv~~t~~~~~~i~ 240 (312)
T PRK12460 169 ALLPLVLGMILGNL----DPDMRKFLTKGGPL----LIPFFAFALGAGINLSMLLQAGLAGILLGVLVTIVTGFFNIFAD 240 (312)
T ss_pred HHHHHHHHHHHhcc----chhhHHHHhccceE----eHHHHHHHhcCCeeHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888888643 33466666666555 8899999999 888765432212222222333333344445555
Q ss_pred HHhCCCchh
Q 035534 273 IAAGLHGDV 281 (291)
Q Consensus 273 ~~~~l~~~~ 281 (291)
++++.|+..
T Consensus 241 rllg~~~~~ 249 (312)
T PRK12460 241 RLVGGTGIA 249 (312)
T ss_pred HHhCCChhH
Confidence 777777554
No 34
>TIGR00932 2a37 transporter, monovalent cation:proton antiporter-2 (CPA2) family.
Probab=71.03 E-value=40 Score=29.58 Aligned_cols=88 Identities=16% Similarity=0.057 Sum_probs=56.2
Q ss_pred HHHHhhchhHHH-HHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHH
Q 035534 186 WLKLAKNPNSYA-CVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIA 263 (291)
Q Consensus 186 ~~~~~~nP~~ia-~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil 263 (291)
.++ ++.|.+.+ ++.|++++-. ..+. .++ .+.++.+++....+.+|..| ..+.+..++..|........-.++
T Consensus 11 ~~~-l~lP~~v~~il~GillGp~--~lg~-i~~--~~~~~~l~~igl~~llF~~Gl~~d~~~l~~~~~~~~~~~~~~~~~ 84 (273)
T TIGR00932 11 SRR-LGIPSVLGYLLAGVLIGPS--GLGL-ISN--VEGVNHLAEFGVILLMFLIGLELDLERLWKLRKAAFGVGVLQVLV 84 (273)
T ss_pred HHH-hCCCHHHHHHHHHHHhCcc--cccC-CCC--hHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344 56775554 4568887633 1122 122 14688899999999999999 898887777777766666665554
Q ss_pred HH-HH-HHHHHHHhCCCch
Q 035534 264 GP-AA-MAIGSIAAGLHGD 280 (291)
Q Consensus 264 ~P-li-~~~~~~~~~l~~~ 280 (291)
| .. .....+.++.+..
T Consensus 85 -~~~~~~~~~~~~~~~~~~ 102 (273)
T TIGR00932 85 -PGVLLGLLLGHLLGLALG 102 (273)
T ss_pred -HHHHHHHHHHHHHCCCHH
Confidence 5 32 3334566776543
No 35
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=70.98 E-value=77 Score=29.13 Aligned_cols=70 Identities=16% Similarity=0.177 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhc-cchhhHHHHHHHHHHHHHHHHHHHH
Q 035534 77 ISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYG-QMAVDLVVQSSVFQSIVWLTIFLFV 152 (291)
Q Consensus 77 ~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G-~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (291)
+-..+.+.+++.++|..+-+- ++..-.++ .+-+|+.=+.+++.-++|| +++.+.+... +.++.-++.+..
T Consensus 255 iy~~~~~~i~~~i~k~lgl~y-~~~~~~~f--t~aSNnfeLAiAvAi~lfG~~s~aA~a~vi---gpLvEVpvml~l 325 (342)
T COG0798 255 IYFLLMFFISYFIAKALGLPY-EDAAALVF--TGASNNFELAIAVAIALFGLTSGAALATVV---GPLVEVPVMLGL 325 (342)
T ss_pred HHHHHHHHHHHHHHHHhCCCh-hhhhceee--eeccccHHHHHHHHHHhcCccccchhhhhc---cchhhHHHHHHH
Confidence 334566777777888766543 33333334 4668999999999999999 6665444433 334444444433
No 36
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.34 E-value=1.2e+02 Score=30.23 Aligned_cols=85 Identities=14% Similarity=0.037 Sum_probs=62.0
Q ss_pred hchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHH
Q 035534 191 KNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMA 269 (291)
Q Consensus 191 ~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~ 269 (291)
.+|.+-|++.|++++ +.+..+.+.+.++.+.+...|+-.+.+| +++.+.....+..+...++..++.-++..+
T Consensus 237 ls~~LGAFlaGl~l~------~s~~~~~l~~~i~pf~~lll~lFFi~vGm~id~~~l~~~~~~il~~~~~~l~~K~~~~~ 310 (601)
T PRK03659 237 LSMALGTFIAGVLLA------ESEYRHELEIAIEPFKGLLLGLFFISVGMALNLGVLYTHLLWVLISVVVLVAVKGLVLY 310 (601)
T ss_pred ccHHHHHHHHHHHhc------CCchHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 356677777777776 3334455666777778899999999999 888766555555556666777888888888
Q ss_pred HHHHHhCCCchh
Q 035534 270 IGSIAAGLHGDV 281 (291)
Q Consensus 270 ~~~~~~~l~~~~ 281 (291)
..+..++.+...
T Consensus 311 ~~~~~~g~~~~~ 322 (601)
T PRK03659 311 LLARLYGLRSSE 322 (601)
T ss_pred HHHHHhCCCHHH
Confidence 888888887544
No 37
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=69.45 E-value=27 Score=34.94 Aligned_cols=86 Identities=17% Similarity=0.120 Sum_probs=56.2
Q ss_pred hhchhHHHH-HHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHH
Q 035534 190 AKNPNSYAC-VIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAA 267 (291)
Q Consensus 190 ~~nP~~ia~-ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli 267 (291)
++.|.+++- +.|++++=. +.+. .++ .+.++.++.....+.||.+| .++++..++..+.++.....-+++.-.+
T Consensus 27 l~lp~vlgyilaGillGP~--~lg~-i~~--~~~i~~laelGvv~LlF~iGLEl~~~~l~~~~~~~~~~g~~qv~~~~~~ 101 (621)
T PRK03562 27 LGLGSVLGYLIAGCIIGPW--GLRL-VTD--VESILHFAEFGVVLMLFVIGLELDPQRLWKLRRSIFGGGALQMVACGGL 101 (621)
T ss_pred hCCChHHHHHHHHHHhCcc--cccC-CCC--HHHHHHHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777765 457777532 1122 122 24578899999999999999 8888776666666665555555555555
Q ss_pred HHHHHHHhCCCch
Q 035534 268 MAIGSIAAGLHGD 280 (291)
Q Consensus 268 ~~~~~~~~~l~~~ 280 (291)
...+++.+|.+..
T Consensus 102 ~~~~~~~~g~~~~ 114 (621)
T PRK03562 102 LGLFCMLLGLRWQ 114 (621)
T ss_pred HHHHHHHhCCCHH
Confidence 5566677777654
No 38
>PRK12460 2-keto-3-deoxygluconate permease; Provisional
Probab=68.40 E-value=19 Score=32.68 Aligned_cols=84 Identities=11% Similarity=-0.005 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q 035534 196 YACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIA 274 (291)
Q Consensus 196 ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~ 274 (291)
+=.++|.+++-+-+.. .++-.+-+...+.-+.+...+-++|+| +++.|......|+-...+..|.++.-++.+.+..+
T Consensus 17 vPl~lga~inTf~P~~-l~iG~fT~alf~~g~~~il~~~~~~~Ga~I~~k~~~~~l~kg~~l~~~K~~~~~~~g~~~~~~ 95 (312)
T PRK12460 17 VPLLIGALINTFFPQA-LEIGGFTTALFKTGAAPLLGAFLLCMGAQISLKAAPQALLKGGVLTITKLGVAIVIGLLVGKF 95 (312)
T ss_pred HHHHHHHHHHhccCcc-hhhCcccHHHHhcChHHHHHHHHHHhcCeeeccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 3345666666551111 123333333333355567778899999 89888777777888888899999999999999999
Q ss_pred hCCCch
Q 035534 275 AGLHGD 280 (291)
Q Consensus 275 ~~l~~~ 280 (291)
+|-|+.
T Consensus 96 ~g~~g~ 101 (312)
T PRK12460 96 FGAEGI 101 (312)
T ss_pred cCcccc
Confidence 987764
No 39
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=62.51 E-value=1.4e+02 Score=28.07 Aligned_cols=246 Identities=9% Similarity=0.010 Sum_probs=122.3
Q ss_pred ccccChhhhhHHHHHH-----HHHHhHHHHHHHhccCCCCCc---chhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchh
Q 035534 31 WKIIAPEECAAINRLV-----CYFTLPLFTIEFTTHVDPFNM---NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWC 102 (291)
Q Consensus 31 ~~~l~~~~~~~l~~lv-----~~v~lP~lif~~i~~~~~~~~---~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~ 102 (291)
.++++++..+..+++- +|...+|++--|+...++.-+ ..++++..+.+.......+.++...+..+. .|..
T Consensus 92 ~~llp~~~i~avt~fm~~snFL~fyIA~LI~GSILgmnRklLIk~~~~~i~~il~g~v~A~~~g~lVG~~~G~~~-~d~~ 170 (438)
T COG3493 92 YNLLPSNVIKAVTNFMGKSNFLDFYIAALIVGSILGMNRKLLIKSLKRYIPPILAGMVGAAAVGILVGLLFGLSF-QDTM 170 (438)
T ss_pred hccCCHHHHHHHHHHhcCCChHHHHHHHHHHhhhhhccHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhCCCh-HHee
Confidence 6889999888888774 689999999999998875532 234555555555555555566666555443 2211
Q ss_pred hh---hccccccccccchhHHHHH-Hhhccc---hhhHHHHHHHHHHHHHHHHHHHHHhhcccC------CC----Cccc
Q 035534 103 IT---NFSLCTLTNTLVLGVPLMK-AMYGQM---AVDLVVQSSVFQSIVWLTIFLFVLEFRRSG------ND----SKDL 165 (291)
Q Consensus 103 i~---~~~~~~~~N~~~~G~Pi~~-~l~G~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~----~~~~ 165 (291)
.. .+. +.---.|...+...+ ++-|.+ ..+.++-.....|++.-..+ .++...+++ +. +++.
T Consensus 171 m~~vlPIM-~GG~GaGavPLS~iYs~itg~s~~~~~s~lipal~igNvfAIi~a-all~~iG~K~psltGnG~Lv~~~~~ 248 (438)
T COG3493 171 MYVVLPIM-GGGMGAGAVPLSEIYSSITGGSQEEYFSQLIPALTIGNVFAIICA-ALLNKIGKKKPSLTGNGELVRSKSK 248 (438)
T ss_pred eeEEeeec-cCCCCCCcccHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHcccCCCccCCceEEecccc
Confidence 11 111 111122333333333 333432 22222222333333332222 222221111 10 1111
Q ss_pred ccCCCC--CCCCCchhh------------HHHHHHHHHhhch--hHHHHHHHHHHHHhhhhcCCCcch----hHHHHHHH
Q 035534 166 EEGHVT--SSSRPPFWH------------LMKVVWLKLAKNP--NSYACVIGLAWAFVANRWHFKLPS----IIEGSILI 225 (291)
Q Consensus 166 ~~~~~e--~~~~~~~~~------------~~~~~~~~~~~nP--~~ia~ilGl~l~~~~~~~~~~lP~----~i~~~l~~ 225 (291)
|+.+|| .+.+.+.+. .....+.+.+.-| .-+.+++..+++.+ +. .|+ ...+.-+.
T Consensus 249 ~~~~ee~~~~~k~d~~~~g~G~llA~~lf~~g~il~kf~~~P~~va~MIil~a~lk~~----nl-vp~~i~~GA~~l~~F 323 (438)
T COG3493 249 EATEEELEKEGKLDLKLMGAGMLLACTLFMAGGILGKFIGLPGPVAFMIILVAILKAA----NL-VPKEIEEGAKQLSQF 323 (438)
T ss_pred chhhhhhhhccCccHHHHHHHHHHHHHHHHHHHHHHHhhcCCchHHHHHHHHHHHHHh----Cc-CCHHHHHHHHHHHHH
Confidence 111122 122222111 1123344444344 33566777777776 54 343 44566677
Q ss_pred HHhhhhHHHHHHhc-C-cCccccccchhHHHHHHHHH-HHHHHHHHHHHHHHhCCCchhhhh
Q 035534 226 MSKAGTGTAMFSMG-E-LGEKLLACGPGLTALGMVLK-FIAGPAAMAIGSIAAGLHGDVLRV 284 (291)
Q Consensus 226 l~~~~~plaL~~iG-~-l~~~~~~~~~~~~~~~~~~r-lil~Pli~~~~~~~~~l~~~~~~v 284 (291)
.+.-.+...|..+| + .+.+..-.........++.- .+-+-...+...+++++-|.++..
T Consensus 324 ~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~grl~~~YPVEaAI 385 (438)
T COG3493 324 FSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVGRLMGFYPVEAAI 385 (438)
T ss_pred HHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 88889999999999 6 34443322221222222222 223334456678889988877654
No 40
>PF03390 2HCT: 2-hydroxycarboxylate transporter family; InterPro: IPR004679 The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate []. The majority of proteins in this entry are known or predicted members of the citrate:cation symporter (CCS) family. They contain the predicted twelve-transmembrane helix motif common to many secondary transporters []. Most of the characterised proteins in this entry are specific for citrate, with either Na+ of H+ as the contransported cation. However, one member is capable of cotransporting either citrate or malate with H+ [], while another has been shown to be an Na+-dependent malate cotransporter [].; GO: 0008514 organic anion transmembrane transporter activity, 0015711 organic anion transport, 0016021 integral to membrane
Probab=60.79 E-value=60 Score=30.75 Aligned_cols=88 Identities=9% Similarity=-0.043 Sum_probs=54.9
Q ss_pred hhccccChh---hhhHHHHHHHHHHhHHHHHH-HhccCCCCCc----chhhHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 035534 29 KWWKIIAPE---ECAAINRLVCYFTLPLFTIE-FTTHVDPFNM----NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFS 100 (291)
Q Consensus 29 k~~~~l~~~---~~~~l~~lv~~v~lP~lif~-~i~~~~~~~~----~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 100 (291)
|-.++++++ ..+..++++.+-+.|.+++- .+...|.+++ ++..+...+...+...+.+++..|+.+-.+ -|
T Consensus 285 K~~~lvP~~~e~~a~~~~~f~~~~lt~~lLvgiGv~~~~l~~l~~a~t~~~vv~~~~~Vl~~~~~a~~vG~l~g~YP-vE 363 (414)
T PF03390_consen 285 KAFGLVPESLEEGAKQWYKFFSKNLTWPLLVGIGVAYTDLNDLIAAFTPQYVVIVLATVLGAVIGAFLVGKLVGFYP-VE 363 (414)
T ss_pred HHhCcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCcHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHhCCCh-HH
Confidence 657888754 56668888887777777766 6666776643 555554444444455555677788876554 46
Q ss_pred hhhhh-ccccccccccch
Q 035534 101 WCITN-FSLCTLTNTLVL 117 (291)
Q Consensus 101 ~~i~~-~~~~~~~N~~~~ 117 (291)
..+.+ ++.+..+-+|.+
T Consensus 364 sAItaGLC~an~GGtGDv 381 (414)
T PF03390_consen 364 SAITAGLCMANMGGTGDV 381 (414)
T ss_pred HHHHhhhcccCCCCCCcc
Confidence 56655 333555556555
No 41
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism]
Probab=56.12 E-value=1.8e+02 Score=27.30 Aligned_cols=62 Identities=15% Similarity=0.168 Sum_probs=34.9
Q ss_pred CCCcchhHHHHHHHHHhh------hhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhh
Q 035534 212 HFKLPSIIEGSILIMSKA------GTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRV 284 (291)
Q Consensus 212 ~~~lP~~i~~~l~~l~~~------~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v 284 (291)
.-++|+.+.+.+.-+.+. .+-+.++.+| -++.. ..=+++.|. .+.+...+|+||....+
T Consensus 248 ~~~vp~~la~~~~~~~~~~~~~ll~inl~llvvG~fmd~~-------------a~ilil~Pi-l~Pi~~~~GIDPvhfGv 313 (379)
T COG1593 248 VEQVPQQLADWLLSLSDSPLVVLLVINLLLLVVGTFMDLT-------------AAILILTPI-LLPIAAALGIDPVHFGV 313 (379)
T ss_pred HhccHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHhccHH-------------HHHHHHHHH-HHHHHHHhCCCceeeHH
Confidence 557899888888777665 3334455556 33322 111233442 23344556888877766
Q ss_pred hee
Q 035534 285 SII 287 (291)
Q Consensus 285 ~vl 287 (291)
.++
T Consensus 314 v~v 316 (379)
T COG1593 314 VFV 316 (379)
T ss_pred HHH
Confidence 554
No 42
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=55.96 E-value=57 Score=32.07 Aligned_cols=82 Identities=13% Similarity=-0.014 Sum_probs=53.6
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAI 270 (291)
Q Consensus 192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~ 270 (291)
++.+-|.+.|++++- -+..+.+.+...-+.+...|+-...+| +++.......+......+..+++.-++..+.
T Consensus 249 s~~lGAflaGl~l~~------~~~~~~~~~~~~~~~~~f~plFFv~~G~~~d~~~l~~~~~~~~~~~~~~~v~K~~~~~~ 322 (558)
T PRK10669 249 SFALGAFFAGMVLNE------SELSHRAAHDTLPLRDAFAVLFFVSVGMLFDPMILIQQPLAVLATLAIIVFGKSLAAFF 322 (558)
T ss_pred cHHHHHHHHHHHHhC------ChhHHHHHHHHhhHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567777788888763 223333443333456778999999999 8877644333334455666677777777777
Q ss_pred HHHHhCCCc
Q 035534 271 GSIAAGLHG 279 (291)
Q Consensus 271 ~~~~~~l~~ 279 (291)
.+..++.+.
T Consensus 323 ~~~~~g~~~ 331 (558)
T PRK10669 323 LVRLFGHSR 331 (558)
T ss_pred HHHHhCCCh
Confidence 787777664
No 43
>PRK05326 potassium/proton antiporter; Reviewed
Probab=54.21 E-value=68 Score=31.61 Aligned_cols=87 Identities=11% Similarity=-0.018 Sum_probs=54.8
Q ss_pred hhchhHH-HHHHHHHHHHhhhhcCCC-cchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHH
Q 035534 190 AKNPNSY-ACVIGLAWAFVANRWHFK-LPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPA 266 (291)
Q Consensus 190 ~~nP~~i-a~ilGl~l~~~~~~~~~~-lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pl 266 (291)
++-|.++ -++.|++++-. +.. .+..-.+..+.+++...++.||..| ..+.+..++..+........-.++ |.
T Consensus 28 ~~~P~ll~~il~GillGp~----~lg~i~~~~~~~~~~i~~l~L~~iLF~~Gl~~~~~~l~~~~~~~~~la~~gv~~-t~ 102 (562)
T PRK05326 28 LGIPSLLLFLAIGMLAGED----GLGGIQFDNYPLAYLVGNLALAVILFDGGLRTRWSSFRPALGPALSLATLGVLI-TA 102 (562)
T ss_pred cCCcHHHHHHHHHHHhCcc----ccCCcccCcHHHHHHHHHHHHHHHHHcCccCCCHHHHHHHHHHHHHHHHHHHHH-HH
Confidence 4677555 45678877654 222 1111135678899999999999999 898887777777666555554443 33
Q ss_pred HH--HHHHHHhCCCchh
Q 035534 267 AM--AIGSIAAGLHGDV 281 (291)
Q Consensus 267 i~--~~~~~~~~l~~~~ 281 (291)
+. +...+.++++...
T Consensus 103 ~~~g~~~~~l~g~~~~~ 119 (562)
T PRK05326 103 GLTGLFAHWLLGLDWLE 119 (562)
T ss_pred HHHHHHHHHHhcCCHHH
Confidence 33 3344567765443
No 44
>COG2855 Predicted membrane protein [Function unknown]
Probab=53.69 E-value=49 Score=30.36 Aligned_cols=85 Identities=15% Similarity=0.108 Sum_probs=61.6
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAI 270 (291)
Q Consensus 192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~ 270 (291)
.|+++|+++|++++. -.+.|+-...-+++-++.....+..-.| +++......-=.........-+...=.+++.
T Consensus 38 ~al~lAIllGi~l~~-----l~~~~~~~~~GI~fs~k~LLr~gIvLlG~~ltl~~i~~~G~~~v~~~~~~l~~t~~~~~~ 112 (334)
T COG2855 38 SALTLAILLGILLGI-----LPQIPAQTSAGITFSSKKLLRLGIVLLGFRLTLSDIADVGGSGVLIIAITLSSTFLFAYF 112 (334)
T ss_pred hHHHHHHHHHHHHhc-----cccchhhhccchhhhHHHHHHHHHHHHcceeeHHHHHHcCccHHHHHHHHHHHHHHHHHH
Confidence 589999999999983 4566777788889999999999999999 8776554322223344444555555566667
Q ss_pred HHHHhCCCchh
Q 035534 271 GSIAAGLHGDV 281 (291)
Q Consensus 271 ~~~~~~l~~~~ 281 (291)
....+|+|...
T Consensus 113 lg~~lgld~~~ 123 (334)
T COG2855 113 LGKLLGLDKKL 123 (334)
T ss_pred HHHHhCCCHHH
Confidence 77788888654
No 45
>TIGR00698 conserved hypothetical integral membrane protein. Members of this family are found so far only in one archaeal species, Archaeoglobus fulgidus, and in two related bacterial species, Haemophilus influenzae and Escherichia coli. It has 9 GES predicted transmembrane regions at conserved locations in all members. These proteins have a molecular weight of approximately 35 to 38 kDa.
Probab=53.22 E-value=74 Score=29.29 Aligned_cols=89 Identities=9% Similarity=-0.099 Sum_probs=55.2
Q ss_pred hchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHH
Q 035534 191 KNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMA 269 (291)
Q Consensus 191 ~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~ 269 (291)
-++.++|+++|++++-. ...+.|+....-+++-++-..-.+...+| +++..+....-.+.......-....=.+..
T Consensus 31 l~~~~~AillG~~l~n~---~~~~~~~~~~~Gi~f~~k~lLr~gIVLlG~~l~~~~i~~~G~~~l~~~~~~v~~~~~~~~ 107 (335)
T TIGR00698 31 LSALFLAILLGMVAGNT---IYPQRDEEKKRGVLFAKPFLLRIGITLYGFRLTFPYIADVGPNEIVADTLILTSTFFLTV 107 (335)
T ss_pred CcHHHHHHHHHHHHhcc---ccccchhhccchHHHHHHHHHHHHHHHHCccccHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence 57788999999999742 01246677777888888999999999999 887765432211222222222222223333
Q ss_pred HHH-HHhCCCchhh
Q 035534 270 IGS-IAAGLHGDVL 282 (291)
Q Consensus 270 ~~~-~~~~l~~~~~ 282 (291)
.+. +.+++|....
T Consensus 108 ~~g~k~l~l~~~~~ 121 (335)
T TIGR00698 108 FLGSSRLKLDKQMS 121 (335)
T ss_pred HHHHHHhCCChhHH
Confidence 344 5788886543
No 46
>TIGR00793 kdgT 2-keto-3-deoxygluconate transporter. This family includes the characterized 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both gram-positive and gram-negative bacteria.
Probab=51.05 E-value=34 Score=30.90 Aligned_cols=54 Identities=17% Similarity=0.019 Sum_probs=45.4
Q ss_pred HHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHHHhCCCc
Q 035534 226 MSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSIAAGLHG 279 (291)
Q Consensus 226 l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~ 279 (291)
-+.+...+-++|+| +++.|......|+-...+..|.++.-++.+.+..++|-|+
T Consensus 46 G~~~il~~~l~~~Ga~I~~k~~g~~l~kg~~l~~~K~~i~~~~g~~~~~~~g~~G 100 (314)
T TIGR00793 46 GTVPILAVWFFCMGASIDLSATGTVLRKSGTLVVTKIAVAWVVAAIASRIIPEDG 100 (314)
T ss_pred CcHHHHHHHHHHhCCeeeecccchhhhhcceeeeHHHHHHHHHHHHHHHHcCcCC
Confidence 45566677899999 8888876767777778888999999999999999999887
No 47
>PF10766 DUF2592: Protein of unknown function (DUF2592); InterPro: IPR019702 This entry represents proteins with unknown function, and appear to be restricted to Enterobacteriaceae. Some members are annotated as ybhY.
Probab=50.78 E-value=29 Score=21.06 Aligned_cols=25 Identities=20% Similarity=0.315 Sum_probs=19.9
Q ss_pred HHHHHHHhhchhHHHHHHHHHHHHh
Q 035534 183 KVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 183 ~~~~~~~~~nP~~ia~ilGl~l~~~ 207 (291)
|+....++.-|.+.|.++|+++.+-
T Consensus 3 kSl~fa~iMVPVvma~ilglIyGlG 27 (41)
T PF10766_consen 3 KSLAFAVIMVPVVMALILGLIYGLG 27 (41)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555566788999999999999763
No 48
>TIGR00807 malonate_madL malonate transporter, MadL subunit. The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=50.26 E-value=1.2e+02 Score=23.47 Aligned_cols=78 Identities=9% Similarity=0.063 Sum_probs=48.7
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHH--hHHHHHHHhccCCCCCc--chhhHHHHHHHHHHHHHHHHHHH
Q 035534 15 VPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFT--LPLFTIEFTTHVDPFNM--NYRFIGADAISKLIIVIVLAFWS 90 (291)
Q Consensus 15 lpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~--lP~lif~~i~~~~~~~~--~~~~i~~~~~~~~i~~~~~~~~~ 90 (291)
+.+++++....++.| ++++++++.+++. ||-. .|..+=.+-.+.-...+ .+.-+++...+..++|...-.++
T Consensus 38 iAMlLLi~~~~~l~k-~G~l~~~te~Gi~---FW~aMYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~i~~l~ 113 (125)
T TIGR00807 38 IAMILLIISKELLAK-RGHLPQVTQFGVG---FWSAMYIPIVVAMAAGQNVVAALSGGMLALLASVAALIVTVLVIRWIS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChhHHhHHH---HHHccHhHHHHHHhhhchhHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 456788888888866 7999999888876 5544 35544333323323333 23333455566677888777788
Q ss_pred HHhcCC
Q 035534 91 MCSKKG 96 (291)
Q Consensus 91 ~~~~~~ 96 (291)
|..++.
T Consensus 114 r~g~~~ 119 (125)
T TIGR00807 114 KSSYGT 119 (125)
T ss_pred HhCCCC
Confidence 875543
No 49
>PF03956 DUF340: Membrane protein of unknown function (DUF340); InterPro: IPR005642 Members of this family contain a conserved core of four predicted transmembrane segments. Some members have an additional pair of N-terminal transmembrane helices. The functions of the proteins in this family are unknown.
Probab=49.61 E-value=1.6e+02 Score=24.75 Aligned_cols=83 Identities=12% Similarity=0.062 Sum_probs=53.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhhHHHHHHHHHHHHHHH
Q 035534 68 NYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLT 147 (291)
Q Consensus 68 ~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~ 147 (291)
+++.+...+...+-+.+.+++..++.+.+. +|.. +.+ +.++=. -+.=|++..++|++.=..+.+.|+.-+++...
T Consensus 55 g~~~Llipl~tIlGSllgg~l~~~ll~~~~-~~~l--av~-sG~GwY-Slsg~~i~~~~~~~~G~iafl~n~~RE~~a~~ 129 (191)
T PF03956_consen 55 GKRALLIPLATILGSLLGGLLASLLLGLSL-KESL--AVA-SGFGWY-SLSGVLITQLYGPELGTIAFLSNLFREILAII 129 (191)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCH-HHHH--HHH-ccCcHH-HhHHHHHHhhhCHHHHHHHHHHHHHHHHHHHH
Confidence 455555555555556666677777775443 3322 222 343322 23346778888998888899999999999888
Q ss_pred HHHHHHhh
Q 035534 148 IFLFVLEF 155 (291)
Q Consensus 148 ~~~~~~~~ 155 (291)
..+.+.++
T Consensus 130 ~~P~~~r~ 137 (191)
T PF03956_consen 130 LIPLLARY 137 (191)
T ss_pred HHHHHHHh
Confidence 88877773
No 50
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=48.58 E-value=1.4e+02 Score=28.47 Aligned_cols=24 Identities=13% Similarity=0.178 Sum_probs=19.0
Q ss_pred HHHHHHhhchhHHHHHHHHHHHHh
Q 035534 184 VVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 184 ~~~~~~~~nP~~ia~ilGl~l~~~ 207 (291)
...+.+++||.+|.+.++-++-..
T Consensus 243 i~~~YVL~Nk~iW~la~a~vfvYi 266 (448)
T COG2271 243 IFVKYVLKNKLIWLLALANVFVYV 266 (448)
T ss_pred HHHHHHHcChHHHHHHHHHHHHHH
Confidence 346788999999999888776654
No 51
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=46.78 E-value=97 Score=30.48 Aligned_cols=85 Identities=13% Similarity=0.051 Sum_probs=50.4
Q ss_pred hhchhHHH-HHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHH
Q 035534 190 AKNPNSYA-CVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAA 267 (291)
Q Consensus 190 ~~nP~~ia-~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli 267 (291)
++.|.+++ ++.|++++=. ..+. .++ .+..+.+++....+.||.+| .++.+..++..+........-+++.-++
T Consensus 28 l~~P~ivg~IlaGillGp~--~lg~-~~~--~~~~~~la~lGli~llF~~Gle~d~~~l~~~~~~~~~~~~~~~~~~~~~ 102 (558)
T PRK10669 28 LRISPLVGYLLAGVLAGPF--TPGF-VAD--TKLAPELAELGVILLMFGVGLHFSLKDLMAVKSIAIPGAIAQIAVATLL 102 (558)
T ss_pred cCCCHHHHHHHHHHhhCcc--cccc-ccc--hHHHHHHHHHHHHHHHHHhHhcCCHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 57776665 4566666432 1122 111 24577899999999999999 8887765544343443444444444444
Q ss_pred HHHHHHHhCCCc
Q 035534 268 MAIGSIAAGLHG 279 (291)
Q Consensus 268 ~~~~~~~~~l~~ 279 (291)
...+.+.++.+.
T Consensus 103 ~~~~~~~~~~~~ 114 (558)
T PRK10669 103 GMALSAVLGWSL 114 (558)
T ss_pred HHHHHHHhCCCH
Confidence 455556666553
No 52
>COG3329 Predicted permease [General function prediction only]
Probab=46.75 E-value=2.3e+02 Score=25.85 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=49.6
Q ss_pred hhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C--cCccccccchh----HHHHHHHHHHH
Q 035534 190 AKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E--LGEKLLACGPG----LTALGMVLKFI 262 (291)
Q Consensus 190 ~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~--l~~~~~~~~~~----~~~~~~~~rli 262 (291)
+.+|.+.-.+.|++...+ ..+.++|+.+.+.+.+ ..|+++| . ...+ .++.. ........-++
T Consensus 15 L~sP~llFf~~Gmlia~~--ksdl~iP~~i~~~lsl-------yLL~aIG~kGGveir--~snl~a~v~~~~~~~aL~~l 83 (372)
T COG3329 15 LLSPTLLFFILGMLIAAF--KSDLEIPEAIYQALSL-------YLLLAIGFKGGVEIR--NSNLTAMVLPVALGVALGFL 83 (372)
T ss_pred hccchHHHHHHHHHHHHH--hccccCchHHHHHHHH-------HHHHHHhcccceeee--cCCcchhHHHHHHHHHHHHH
Confidence 468999999999999988 2356799988877655 5789999 3 3333 22332 33333333333
Q ss_pred HHHHHHHHHHHHhCCCchhh
Q 035534 263 AGPAAMAIGSIAAGLHGDVL 282 (291)
Q Consensus 263 l~Pli~~~~~~~~~l~~~~~ 282 (291)
+.+..-+...++.++|...+
T Consensus 84 i~~ia~f~l~kl~~vdtvda 103 (372)
T COG3329 84 IVFIAYFLLRKLPKVDTVDA 103 (372)
T ss_pred HHHHHHHHHHHccccchHHH
Confidence 33333334445556665543
No 53
>COG0798 ACR3 Arsenite efflux pump ACR3 and related permeases [Inorganic ion transport and metabolism]
Probab=46.50 E-value=2.4e+02 Score=26.00 Aligned_cols=245 Identities=13% Similarity=0.077 Sum_probs=116.4
Q ss_pred HHHHHHHhHhhhhhccc----cChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc-----chhhHH-HHHHHHHHHHHHH
Q 035534 17 LYFALMLGYGSVKWWKI----IAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-----NYRFIG-ADAISKLIIVIVL 86 (291)
Q Consensus 17 i~lii~~G~~~~k~~~~----l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~-----~~~~i~-~~~~~~~i~~~~~ 86 (291)
+++.+.+|..+++...- ++.-+..+++. -..+.+=.+++--+.+.|.++. +++.+. .......+.-++.
T Consensus 20 v~l~i~~Gi~lG~~~p~~~~~l~~~~~~~~si-piai~L~~MmYP~m~ki~~~~~~~v~k~~k~L~lsL~~Nwii~P~lm 98 (342)
T COG0798 20 VFLAIAIGILLGVHFPGLAQLLGKLEFGGVSI-PIAIGLILMMYPPMLKIDFEELKNVFKDPKPLILSLFVNWIIGPLLM 98 (342)
T ss_pred HHHHHHHHHHHHhcccchhhhcccceeCceeh-hHHHHHHHHHhHHHhcCCHHHHHHHHhcchHHHHHHHHHHHHHHHHH
Confidence 56778888888763211 11001111111 1223333334444555554432 455443 3344455566666
Q ss_pred HHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccchhh--HHHHHHHHHHHHHHHHHHHHHhhcccCCCCcc
Q 035534 87 AFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMAVD--LVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKD 164 (291)
Q Consensus 87 ~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (291)
+.+++++..+. .+ ...++...+..=+.-+.+--.+-..||.... .+..-+..+.+++-+++...++....
T Consensus 99 ~~la~~fl~~~-pe-y~~GlILlglApC~aMVivw~~La~Gd~~~tlv~Va~n~l~qiv~y~~~~~~~l~v~~~------ 170 (342)
T COG0798 99 FALAWFFLPDE-PE-YRAGLILLGLAPCIAMVIVWSGLAKGDRELTLVLVAFNSLLQIVLYAPLGKFFLGVISI------ 170 (342)
T ss_pred HHHHHHHhCCC-HH-HHHHHHHHHhhhhHHHHHHHHhhccCcHhhhhHHHHHHHHHHHHHHHHHHHHHHhhccc------
Confidence 66676654332 22 3333211121222234344444556775443 23333455555555777777765422
Q ss_pred cccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchhH-HH------HHHHHHhhhhHHHHHH
Q 035534 165 LEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSII-EG------SILIMSKAGTGTAMFS 237 (291)
Q Consensus 165 ~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i-~~------~l~~l~~~~~plaL~~ 237 (291)
+.++++..|+++.- +--|.+.|.+.=-..- +.+=+++. .+ ++..+|-..+=..+|.
T Consensus 171 ----------~v~~~~i~~Sv~ly-l~iPli~G~lTR~i~~------k~kg~~~~~~~f~p~ispi~ligLl~TivliF~ 233 (342)
T COG0798 171 ----------SVPFWTIAKSVLLY-LGIPLIAGVLTRYILI------KKKGREWYESRFLPKISPIALIGLLLTIVLIFA 233 (342)
T ss_pred ----------cccHHHHHHHHHHH-HHHHHHHHHHHHHHHH------HhccchHHHHHHHhhcChHHHHHHHHHHHHHHH
Confidence 56655555655544 3467665555443332 22333322 22 2233333333333332
Q ss_pred hcCcCcccccc---chhHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhhheeecc
Q 035534 238 MGELGEKLLAC---GPGLTALGMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVT 290 (291)
Q Consensus 238 iG~l~~~~~~~---~~~~~~~~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa 290 (291)
. +.+.+-. +.-.+..-..+-+.++=.+++.+.+..|++.......+..+|
T Consensus 234 ~---qg~~Iv~~p~~i~liAIpl~iy~~~~~~i~~~i~k~lgl~y~~~~~~~ft~a 286 (342)
T COG0798 234 F---QGEQIVEQPLDILLIAIPLLIYFLLMFFISYFIAKALGLPYEDAAALVFTGA 286 (342)
T ss_pred H---hHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCChhhhhceeeeec
Confidence 2 2221111 222333445566666667777778889999888777766554
No 54
>PF03817 MadL: Malonate transporter MadL subunit; InterPro: IPR004690 The MSS family includes the monobasic malonate:Na+ symporter of Malonomonas rubra. It consists of two integral membrane proteins, MadL and MadM. The transporter is believed to catalyze the electroneutral reversible uptake of H+-malonate with one Na+, and both subunits have been shown to be essential for activity.
Probab=46.01 E-value=1.4e+02 Score=23.10 Aligned_cols=77 Identities=8% Similarity=0.073 Sum_probs=48.0
Q ss_pred HHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHH--hHHHHHHHhccCCCCCcc--hhhHHHHHHHHHHHHHHHHHHH
Q 035534 15 VPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFT--LPLFTIEFTTHVDPFNMN--YRFIGADAISKLIIVIVLAFWS 90 (291)
Q Consensus 15 lpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~--lP~lif~~i~~~~~~~~~--~~~i~~~~~~~~i~~~~~~~~~ 90 (291)
+.+++++.+..++.| ++.+++++.+++. ||-. .|..+=.+-.+.-...++ +.-+++...+..++|.+.-+++
T Consensus 38 iAMlLLI~~~~~l~k-~g~l~~~te~Gi~---FW~amYIPIVVAMAA~QNVv~Al~gG~~Allagi~av~~~~~~ip~ls 113 (125)
T PF03817_consen 38 IAMLLLIFARLWLQK-KGLLSKPTEQGIE---FWSAMYIPIVVAMAAQQNVVAALSGGPVALLAGIGAVAVCFLLIPLLS 113 (125)
T ss_pred HHHHHHHHHHHHHHH-cCCCChHHHhHHH---HHHccHHHHHHHHhhhhhhHHhhcCCcchHHHHHHHHHHHHHHHHHHH
Confidence 356778888888866 6889998888876 4444 455544433333333332 2333455566677777777778
Q ss_pred HHhcC
Q 035534 91 MCSKK 95 (291)
Q Consensus 91 ~~~~~ 95 (291)
|.-++
T Consensus 114 r~g~~ 118 (125)
T PF03817_consen 114 RIGRK 118 (125)
T ss_pred hcCCC
Confidence 87544
No 55
>TIGR00832 acr3 arsenical-resistance protein. The first protein of the ACR3 family functionally characterized was the ACR3 protein of Saccharomyces cerevisiae. It is present in the yeast plasma membrane and pumps arsenite out of the cell in response to the pmf. Similar proteins are found in bacteria, often as part of a four gene operon with an regulatory protein ArsR, a protein of unknown function ArsH, and an arsenate reductase that converts arsenate to arsenite to facilitate transport.
Probab=44.34 E-value=2.5e+02 Score=25.61 Aligned_cols=35 Identities=9% Similarity=-0.076 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhCCCchhhhhheeecc
Q 035534 256 GMVLKFIAGPAAMAIGSIAAGLHGDVLRVSIIQVT 290 (291)
Q Consensus 256 ~~~~rlil~Pli~~~~~~~~~l~~~~~~v~vl~aa 290 (291)
.+..-......+.+..++.+++|...+++...+.+
T Consensus 251 ~v~l~~~~~~~lg~~~~r~~~l~~~~~~a~~~e~g 285 (328)
T TIGR00832 251 PLLIYFYIMFFLTFALAKKLGLPYSITAPAAFTGA 285 (328)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcChhhhhhheehhh
Confidence 45577778888889899999999999999888765
No 56
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=44.09 E-value=1.6e+02 Score=29.46 Aligned_cols=85 Identities=18% Similarity=0.047 Sum_probs=51.5
Q ss_pred hhchhHHHH-HHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHH
Q 035534 190 AKNPNSYAC-VIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAA 267 (291)
Q Consensus 190 ~~nP~~ia~-ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli 267 (291)
++-|.+++- +.|++++=. +.+. +++ .+.+..++.....+.||.+| .++.+..++..+.+......-.++.-++
T Consensus 27 l~~p~ilg~ilaGillGP~--~lg~-i~~--~~~i~~laelGvv~LLF~iGLel~~~~l~~~~~~~~~~g~~~v~~t~~~ 101 (601)
T PRK03659 27 LGIGAVLGYLLAGIAIGPW--GLGF-ISD--VDEILHFSELGVVFLMFIIGLELNPSKLWQLRRSIFGVGAAQVLLSAAV 101 (601)
T ss_pred hCCChHHHHHHHHHHhccc--cccC-CCc--HHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567766665 557776532 1122 122 23567889999999999999 8888766655555555544444444334
Q ss_pred HHHHHHHhCCCc
Q 035534 268 MAIGSIAAGLHG 279 (291)
Q Consensus 268 ~~~~~~~~~l~~ 279 (291)
...+.+.+|++.
T Consensus 102 ~~~~~~~~g~~~ 113 (601)
T PRK03659 102 LAGLLMLTDFSW 113 (601)
T ss_pred HHHHHHHHccCH
Confidence 444555667664
No 57
>PF05982 DUF897: Domain of unknown function (DUF897) ; InterPro: IPR010293 This is a family of bacterial proteins with unknown function
Probab=43.70 E-value=1.6e+02 Score=27.04 Aligned_cols=81 Identities=20% Similarity=0.161 Sum_probs=53.4
Q ss_pred hhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-C----cCccccccchhHHHHHHHHHHHHHHHH
Q 035534 193 PNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-E----LGEKLLACGPGLTALGMVLKFIAGPAA 267 (291)
Q Consensus 193 P~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~----l~~~~~~~~~~~~~~~~~~rlil~Pli 267 (291)
|.+..+++|++.... +-+.++|+.+.+.++. .-|+++| . ++...... ........+.==++.|++
T Consensus 1 P~vLFF~LG~~A~~~--kSdL~iP~~i~k~lsi-------yLLlaIGlkGG~~l~~~~~~~-~~~~~~~~~~lg~liPl~ 70 (327)
T PF05982_consen 1 PVVLFFILGIIAALL--KSDLEIPEAIYKFLSI-------YLLLAIGLKGGVELAHSGLTA-LLLPLLAAVLLGILIPLI 70 (327)
T ss_pred CchHHHHHHHHHHHH--cCCCcCChhHHHHHHH-------HHHHHHhcccHHHHHcCCHHH-HHHHHHHHHHHHHHHHHH
Confidence 678888999998887 3367899998887765 5789999 3 33322221 222233344445678999
Q ss_pred HHHHHHH-hCCCchhhh
Q 035534 268 MAIGSIA-AGLHGDVLR 283 (291)
Q Consensus 268 ~~~~~~~-~~l~~~~~~ 283 (291)
++.+.+- .++|...+.
T Consensus 71 ~~~iLr~~~~l~~~daa 87 (327)
T PF05982_consen 71 AFPILRRLGKLDRADAA 87 (327)
T ss_pred HHHHHHHccCCChhhHH
Confidence 9888764 677765543
No 58
>COG4389 Site-specific recombinase [DNA replication, recombination, and repair]
Probab=43.32 E-value=72 Score=30.71 Aligned_cols=51 Identities=22% Similarity=0.298 Sum_probs=33.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCCCCCCchhhHHHHHHHHHhhchh
Q 035534 130 AVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPN 194 (291)
Q Consensus 130 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~ 194 (291)
++..+.++.++|..+.+.+...+.-+.++. +..+++...+.+|+.+.++|.
T Consensus 609 g~~~vlLiGvvNl~VSF~lAl~vAlRSr~t--------------~i~s~r~I~~~VW~~Ik~~PL 659 (677)
T COG4389 609 GIFSVLLIGLVNLCVSFSLALFVALRSRGT--------------KIGSIRNIIKSVWNQIKSNPL 659 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------------cchhHHHHHHHHHHHHhcCCc
Confidence 444455566777777788888776544432 134566677888999888884
No 59
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=42.37 E-value=3.7e+02 Score=26.97 Aligned_cols=84 Identities=13% Similarity=0.022 Sum_probs=59.5
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAI 270 (291)
Q Consensus 192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~ 270 (291)
++.+-|++.|++++ +.+.-.-+.+.++-+.+...|+-.+.+| +++.......+..+...+...++.-++.++.
T Consensus 241 s~~lGAFlAGl~l~------~~~~~~~le~~i~pf~~lll~lFFi~vG~~id~~~l~~~~~~il~~~~~~~~~K~~~~~~ 314 (621)
T PRK03562 241 SMALGAFLAGVLLA------SSEYRHALESDIEPFKGLLLGLFFIAVGMSIDFGTLLENPLRILILLLGFLAIKIAMLWL 314 (621)
T ss_pred cHHHHHHHHHHHhc------CCccHHHHHHHHHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666677777776 3333445667777778889999999999 8887654444444555566678888888888
Q ss_pred HHHHhCCCchh
Q 035534 271 GSIAAGLHGDV 281 (291)
Q Consensus 271 ~~~~~~l~~~~ 281 (291)
.+..++.+...
T Consensus 315 ~~~~~g~~~~~ 325 (621)
T PRK03562 315 LARPLGVPRKQ 325 (621)
T ss_pred HHHHhCCCHhH
Confidence 88888887544
No 60
>PLN03159 cation/H(+) antiporter 15; Provisional
Probab=37.85 E-value=3.3e+02 Score=28.47 Aligned_cols=114 Identities=9% Similarity=0.029 Sum_probs=56.3
Q ss_pred hhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc-c---hhhHHHH-HHHHHHHHHHHHHHHHHhcCCcccchhhhhccccc
Q 035534 36 PEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-N---YRFIGAD-AISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCT 110 (291)
Q Consensus 36 ~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~-~---~~~i~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 110 (291)
++..+.+..++..+++|......-.+.|+..+ + |..+... +++.+.=++..++.++..+.+. ++....++..+.
T Consensus 313 ~~l~ekle~~~~~lflPlFFv~vGl~idl~~l~~~~~~~~~~~liv~a~~gK~~g~~l~a~~~g~~~-~eal~lG~lm~~ 391 (832)
T PLN03159 313 VTLIEKLEDFVSGLLLPLFFAISGLKTNVTKIQGPATWGLLVLVIIMASAGKIMGTIIIAFFYTMPF-REGITLGFLMNT 391 (832)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhheeeHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCH-HHHHHHHHHHhc
Confidence 44567788899999999999887767776433 2 2221111 1111122233345566666554 454544432233
Q ss_pred cccccchhHHHHHHh-----hccchhhHHHHHHHHHHHHHHHHHHHHH
Q 035534 111 LTNTLVLGVPLMKAM-----YGQMAVDLVVQSSVFQSIVWLTIFLFVL 153 (291)
Q Consensus 111 ~~N~~~~G~Pi~~~l-----~G~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (291)
. |.+.+-+...- .+++.....++..+..+.+.-++...++
T Consensus 392 k---G~~~Lii~~ig~~~gvi~~~~f~~lVl~avl~T~i~~Plv~~ly 436 (832)
T PLN03159 392 K---GLVEMIVLNVGRDQEVLDDESFAVMVLVAVAMTALITPVVTVVY 436 (832)
T ss_pred c---cHHHHHHHHHHHhcCccCchhhhHHHHHHHHHHHHHHHHHHHHh
Confidence 3 34444444332 3344333333334444444444444443
No 61
>PF06826 Asp-Al_Ex: Predicted Permease Membrane Region; InterPro: IPR006512 These sequences contain a domain that is duplicated in HI0035 of Haemophilus influenzae, in YidE and YbjL of Escherichia coli, and in a number of other putative transporters. Member proteins may have 0, 1, or 2 copies of the TrkA-C potassium uptake domain (IPR006037 from INTERPRO) between the duplications. The duplication appears distantly related to both the N- and the C-terminal domains the sodium/hydrogen exchanger family domain (IPR006153 from INTERPRO). The domain contains several apparent transmembrane regions and is proposed here to act in transport.
Probab=37.03 E-value=2.3e+02 Score=23.18 Aligned_cols=124 Identities=15% Similarity=0.037 Sum_probs=65.2
Q ss_pred HHHHHHHHHhHhhhhhcccc-ChhhhhHHHHHHHHHHhHHHHHHHhccC--CCCCcchhhHHHHHHHHHHHHHHHHHHHH
Q 035534 15 VPLYFALMLGYGSVKWWKII-APEECAAINRLVCYFTLPLFTIEFTTHV--DPFNMNYRFIGADAISKLIIVIVLAFWSM 91 (291)
Q Consensus 15 lpi~lii~~G~~~~k~~~~l-~~~~~~~l~~lv~~v~lP~lif~~i~~~--~~~~~~~~~i~~~~~~~~i~~~~~~~~~~ 91 (291)
.+++.=+.+|++-+| .+.. +.+..+.++++=+.+++=+.=..+=.+- .+.+..++++....+...+..++.+.+.|
T Consensus 28 G~L~vgL~~G~~~~~-~~~~~~~~~~~~l~~~GL~lFl~~VGl~aG~~F~~~l~~~G~~~~~~~~~i~~~~~~~~~~~~~ 106 (169)
T PF06826_consen 28 GVLFVGLILGALGRT-GPIFLPISAPSFLRQLGLALFLAAVGLSAGPGFFSSLKRGGLKLLLLGVIITLVPLLIALVIGR 106 (169)
T ss_pred HHHHHHHHHHHhhhc-cCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577777888888633 3333 4444555666666555554433321111 01111245554445555666677777787
Q ss_pred -HhcCCcccchhhhhccccccccccchhHHHHH-Hhhccch--hhHHHHHHHHHH
Q 035534 92 -CSKKGSYFSWCITNFSLCTLTNTLVLGVPLMK-AMYGQMA--VDLVVQSSVFQS 142 (291)
Q Consensus 92 -~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~-~l~G~~~--~~~~~~~~~~~~ 142 (291)
+.|.+. . ...+..+....|+.-++...=. .=-+... +.|+..|-++..
T Consensus 107 ~~~~l~~--~-~~~G~~aGa~T~tp~L~~A~~~~~~~~~~~~~vgYa~~Yp~g~i 158 (169)
T PF06826_consen 107 YLFKLNP--G-IAAGILAGALTSTPALAAAQEAISDSGIPAIAVGYAVTYPFGVI 158 (169)
T ss_pred HHcCCCH--H-HHHHHHHccccCcHHHHHHHHhhhcCCCchhhhhHHHHHHHHHH
Confidence 666543 2 2333333777888666654433 1123344 677777755444
No 62
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=36.82 E-value=2.5e+02 Score=25.79 Aligned_cols=93 Identities=14% Similarity=-0.023 Sum_probs=60.6
Q ss_pred chhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc--CcCccccccchhHHHHHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG--ELGEKLLACGPGLTALGMVLKFIAGPAAMA 269 (291)
Q Consensus 192 nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG--~l~~~~~~~~~~~~~~~~~~rlil~Pli~~ 269 (291)
-|.+..+.+|.++.-. ++--++.....-++.-+.+.|+.+|.-= +...+.. ..++........=.++.-++.+
T Consensus 7 ~~i~~ii~~G~~~~~~----~~l~~~~~~~ls~lv~~~~lP~liF~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 81 (385)
T PF03547_consen 7 LPIFLIILLGYLLGRF----GILDPEASKGLSKLVFNVFLPALIFSSIANTDTLEDL-LSLWFIPVFAFIIFILGLLLGF 81 (385)
T ss_pred HHHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhh-hhhHHHHHHHHHHHHHHHHHHH
Confidence 3677788888888754 6666777788888888999999888754 3333322 2333444444444455555666
Q ss_pred HHHHHhCCCchhhhhheeec
Q 035534 270 IGSIAAGLHGDVLRVSIIQV 289 (291)
Q Consensus 270 ~~~~~~~l~~~~~~v~vl~a 289 (291)
...+.++.+...+.+.++.+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~ 101 (385)
T PF03547_consen 82 LLSRLFRLPKEWRGVFVLAA 101 (385)
T ss_pred HHHHhcCCCcccceEEEecc
Confidence 66677788887777666554
No 63
>COG3493 CitS Na+/citrate symporter [Energy production and conversion]
Probab=36.37 E-value=3e+02 Score=25.96 Aligned_cols=97 Identities=14% Similarity=0.046 Sum_probs=54.4
Q ss_pred HHHHHhHhhhhhccccChhh---hhHHHHHHH-HHHhHHHHHHHhccCCCCCc----chhhHHHHHHHHHHHHHHHHHHH
Q 035534 19 FALMLGYGSVKWWKIIAPEE---CAAINRLVC-YFTLPLFTIEFTTHVDPFNM----NYRFIGADAISKLIIVIVLAFWS 90 (291)
Q Consensus 19 lii~~G~~~~k~~~~l~~~~---~~~l~~lv~-~v~lP~lif~~i~~~~~~~~----~~~~i~~~~~~~~i~~~~~~~~~ 90 (291)
.++.+=.++ |..+.+++|. .+.++++.- +.+-|.+.=..++-+|+++. +|..+...+...+..-..+++.+
T Consensus 295 ~MIil~a~l-k~~nlvp~~i~~GA~~l~~F~sk~~t~~Lm~giGv~ytdl~ev~~alt~~~vii~~~vVl~~i~~~~f~g 373 (438)
T COG3493 295 FMIILVAIL-KAANLVPKEIEEGAKQLSQFFSKNLTWPLMAGIGVAYTDLNEVAAALTWQNVIIALSVVLGAILGGAFVG 373 (438)
T ss_pred HHHHHHHHH-HHhCcCCHHHHHHHHHHHHHHHHhhHHHHHHhhhhccccHHHHHHHhchhHHHHHHHHHHHHHHHHHHHH
Confidence 344444455 4467777554 555666654 45556666667777777653 56655444333444455567778
Q ss_pred HHhcCCcccchhhhh-ccccccccccch
Q 035534 91 MCSKKGSYFSWCITN-FSLCTLTNTLVL 117 (291)
Q Consensus 91 ~~~~~~~~~~~~i~~-~~~~~~~N~~~~ 117 (291)
|+.+-.+ -|..+.+ .+.+..+-+|-+
T Consensus 374 rl~~~YP-VEaAI~aglC~a~~GGtGDv 400 (438)
T COG3493 374 RLMGFYP-VEAAITAGLCMANMGGTGDV 400 (438)
T ss_pred HHhcCCc-hHHHHHHhHHhcCCCCCCch
Confidence 8866544 4666655 322444444443
No 64
>PF03616 Glt_symporter: Sodium/glutamate symporter; InterPro: IPR004445 This is a family of sodium/glutamate symporters (glutamate permeases), which catalyse the sodium-dependent uptake of extracellular glutamate. The protein is located in the inner membrane.; GO: 0015501 glutamate:sodium symporter activity, 0015813 L-glutamate transport, 0016021 integral to membrane
Probab=34.88 E-value=3.8e+02 Score=24.94 Aligned_cols=60 Identities=17% Similarity=0.189 Sum_probs=29.9
Q ss_pred HHHHHHHHHHHHhcCCcccchhh--hhccccccccccchhHHHHHHhhccc-hhhHHHHHHHHHH
Q 035534 81 IIVIVLAFWSMCSKKGSYFSWCI--TNFSLCTLTNTLVLGVPLMKAMYGQM-AVDLVVQSSVFQS 142 (291)
Q Consensus 81 i~~~~~~~~~~~~~~~~~~~~~i--~~~~~~~~~N~~~~G~Pi~~~l~G~~-~~~~~~~~~~~~~ 142 (291)
...+++..++++...++...-.. .++. ...++..-+| |..+..||=+ +...+..+.....
T Consensus 106 ~Q~~vG~~la~l~gl~p~~Gll~Gsi~f~-GGhGTAaa~g-~~fe~~~G~~~a~~vg~a~AT~Gl 168 (368)
T PF03616_consen 106 LQNIVGLGLAKLLGLDPLFGLLAGSIGFT-GGHGTAAAFG-PTFEELYGWEGATSVGMAAATFGL 168 (368)
T ss_pred HHHHHHHHHHHHhCCCchHHHHhcccccc-CCccHHHHHH-HHHHHhcChhhhHHHHHHHHHHHH
Confidence 34445555566655444121111 1234 6677777777 7777777743 4444443333333
No 65
>PRK04972 putative transporter; Provisional
Probab=33.41 E-value=4.4e+02 Score=26.09 Aligned_cols=143 Identities=9% Similarity=-0.045 Sum_probs=0.0
Q ss_pred HHHHHHH--HHHHHHHHHHHHhHhhhhhccccC--------------------hhhhhHHHHHHHHHHhHHHHHHHhccC
Q 035534 5 EDVYKVI--VAMVPLYFALMLGYGSVKWWKIIA--------------------PEECAAINRLVCYFTLPLFTIEFTTHV 62 (291)
Q Consensus 5 ~~~~~i~--~~vlpi~lii~~G~~~~k~~~~l~--------------------~~~~~~l~~lv~~v~lP~lif~~i~~~ 62 (291)
+++.+.+ +..+.+++.+++||+++| .++-+ .+.......+=+..++=+.=..+=.+-
T Consensus 3 ~~~~~~l~~~~~~~lf~~i~lG~~lG~-i~~~~~~LG~~~g~L~vgl~~g~~~~~~~~~~~~~gl~lF~~~vG~~~Gp~F 81 (558)
T PRK04972 3 INVADLLNGNYILLLFVVLALGLCLGK-LRLGSIQLGNSIGVLVVSLLLGQQHFSINTDALNLGFMLFIFCVGVEAGPNF 81 (558)
T ss_pred ccHHHHhccCChHHHHHHHHHHHhhhc-eEEeeEecCcchHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHHhhhhhHHH
Q ss_pred --CCCCcchhhHHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhcc------------
Q 035534 63 --DPFNMNYRFIGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ------------ 128 (291)
Q Consensus 63 --~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~------------ 128 (291)
.+.+..+++.....+..++..++.+...|+++.+. ......++ ....|+.-+|...=..-=+.
T Consensus 82 ~~~l~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~G~~a-Ga~T~tp~l~~a~~~~~~~~~~~~~~~~~~~~ 158 (558)
T PRK04972 82 FSIFFRDGKNYLMLALVMVGSALVIALGLGKLFGWDI--GLTAGMLA-GSMTSTPVLVGAGDTLRHSGAESRQLSLALDN 158 (558)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCCH--HHHHHHhh-ccccCcHHHHHHHHHHhccCccccchhcccCc
Q ss_pred chhhHHHHHHHHHHHHHHHHHHH
Q 035534 129 MAVDLVVQSSVFQSIVWLTIFLF 151 (291)
Q Consensus 129 ~~~~~~~~~~~~~~~~~~~~~~~ 151 (291)
..++|++.|-++...........
T Consensus 159 ~~vgYa~~y~~g~i~~i~~~~~~ 181 (558)
T PRK04972 159 LSLGYALTYLIGLVSLIVGARYL 181 (558)
T ss_pred cchhHHhHHHHHHHHHHHHHHHH
No 66
>TIGR00831 a_cpa1 Na+/H+ antiporter, bacterial form. This model is specific for the bacterial members of this family.
Probab=33.21 E-value=1.4e+02 Score=29.26 Aligned_cols=67 Identities=15% Similarity=-0.005 Sum_probs=39.1
Q ss_pred hchh-HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHH
Q 035534 191 KNPN-SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIA 263 (291)
Q Consensus 191 ~nP~-~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil 263 (291)
+-|. +.-++.|++++..+....+++++. ..-....|..||.-| .++.+..+++++.+....+.=.++
T Consensus 21 ~lP~~v~lil~Gi~lg~~~~~~~~~~~~~------~~~~~~Lp~lLF~~g~~~~~~~l~~~~~~i~~la~~~vli 89 (525)
T TIGR00831 21 RLPYPIALILAGLLLGLAGLLPEVPLDRE------IVLFLFLPPLLFEAAMNTDLRELRENFRPIALIAFLLVVV 89 (525)
T ss_pred CCCHHHHHHHHHHHHHhccccCCCCCCHH------HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4553 445566777775411112233221 223468899999999 888887777776666544443333
No 67
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=30.46 E-value=1.8e+02 Score=25.97 Aligned_cols=26 Identities=15% Similarity=0.066 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHhHHHHHHHhccCCCC
Q 035534 39 CAAINRLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 39 ~~~l~~lv~~v~lP~lif~~i~~~~~~ 65 (291)
.+.++ ++--+++|..++.++++++..
T Consensus 258 mk~LT-vvt~IflP~t~IaGiyGMNf~ 283 (318)
T TIGR00383 258 MKILT-VVSTIFIPLTFIAGIYGMNFK 283 (318)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHhCCcc
Confidence 34343 455689999999999988755
No 68
>PF05684 DUF819: Protein of unknown function (DUF819); InterPro: IPR008537 This family contains proteins of unknown function from archaeal, bacterial and plant species.
Probab=29.78 E-value=4.7e+02 Score=24.46 Aligned_cols=124 Identities=13% Similarity=0.045 Sum_probs=62.2
Q ss_pred HHHHHHHHHhHhhhhhccccCh-hhhhHHHHHHHHHHhHHHHHHHhc-cCCCCCc-c-hhhHHHHHHHHHHHHHHHHHHH
Q 035534 15 VPLYFALMLGYGSVKWWKIIAP-EECAAINRLVCYFTLPLFTIEFTT-HVDPFNM-N-YRFIGADAISKLIIVIVLAFWS 90 (291)
Q Consensus 15 lpi~lii~~G~~~~k~~~~l~~-~~~~~l~~lv~~v~lP~lif~~i~-~~~~~~~-~-~~~i~~~~~~~~i~~~~~~~~~ 90 (291)
.++.+...+|..... .+..+. ...+.+..+..|+++ ..+. +.|+.++ + +.+++..++...++..+.+..+
T Consensus 241 ~~il~~tt~~l~~~~-~~~~~~l~g~~~lg~~lly~ff-----a~IGa~a~i~~l~~ap~~~l~~~i~l~iH~~l~l~~~ 314 (378)
T PF05684_consen 241 WLILTVTTLGLATSF-PPFRKLLRGASELGTFLLYLFF-----AVIGASADISELLDAPSLFLFGFIILAIHLLLMLILG 314 (378)
T ss_pred HHHHHHHHHHHHHhc-cchhhcCCchHHHHHHHHHHHH-----HHHccccCHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence 355555666665432 232222 345667777776543 3332 3355543 3 2333333334445555667788
Q ss_pred HHhcCCcccchhhhhcccccccccc-chhHHHHHHhhccchhhHHHHHHHHHHHHHHHHHH
Q 035534 91 MCSKKGSYFSWCITNFSLCTLTNTL-VLGVPLMKAMYGQMAVDLVVQSSVFQSIVWLTIFL 150 (291)
Q Consensus 91 ~~~~~~~~~~~~i~~~~~~~~~N~~-~~G~Pi~~~l~G~~~~~~~~~~~~~~~~~~~~~~~ 150 (291)
|++|.|. .+..+.+ -.|.| -=.-|.+.+.+|++-+..+++..+....+-.-+|+
T Consensus 315 kl~k~~l-~~~~vAS-----~AnIGGpaTA~a~A~a~~~~Lv~pgvL~gvlGyaiGty~G~ 369 (378)
T PF05684_consen 315 KLFKIDL-FELLVAS-----NANIGGPATAPAVAAAKGPSLVPPGVLMGVLGYAIGTYLGL 369 (378)
T ss_pred HHHCCCH-HHHHHHh-----hcccCCcchHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHH
Confidence 9888765 3322222 22321 12246777788966555555555444444333333
No 69
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=27.39 E-value=3.1e+02 Score=25.01 Aligned_cols=107 Identities=16% Similarity=0.138 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc-c--hhhHHHHHHHHHHHHH
Q 035534 8 YKVIVAMVPLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM-N--YRFIGADAISKLIIVI 84 (291)
Q Consensus 8 ~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~-~--~~~i~~~~~~~~i~~~ 84 (291)
...+..++|+.+ |..++ -+|+|.++.+.+ ...+.+|.+-|.-=++.++++. . ..=++..++..+++..
T Consensus 169 ~~lv~~llP~ii----G~iLG----NLD~~~r~fl~~-~~~~lIPF~~f~lGa~inl~~i~~aGl~GIlLgv~~~~vtg~ 239 (314)
T PF03812_consen 169 MSLVAALLPIII----GMILG----NLDPDFRKFLAP-GVPILIPFFGFALGAGINLSNIIKAGLSGILLGVIVVVVTGI 239 (314)
T ss_pred HHHHHHHHHHHH----HHHHh----cCCHHHHHHHhc-CCCeeeehhhhhhcCCCCHHHHHHhCcchHHHHHHHHHHHhH
Confidence 445566667654 55553 256655554443 3457888888887777776643 2 2211122222333444
Q ss_pred HHHHHHHHh-cCCcccchhhhhccccccccccchhHHHHHHhhccc
Q 035534 85 VLAFWSMCS-KKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQM 129 (291)
Q Consensus 85 ~~~~~~~~~-~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~ 129 (291)
..+...|+. |++. ..-.+.+ ++-+|.. ..|-.-+-..++
T Consensus 240 ~~~~~dr~i~~~~g---~aG~A~s-stAGnav--atPaaiA~~dP~ 279 (314)
T PF03812_consen 240 PLYLADRLILKGNG---VAGAAIS-STAGNAV--ATPAAIAAADPS 279 (314)
T ss_pred HHHHHHHHHcCCCC---ceeehHH-hhhhhhh--hhhHHHHHhChh
Confidence 455566654 3322 1111222 4556654 456555554443
No 70
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=27.19 E-value=4.7e+02 Score=23.64 Aligned_cols=90 Identities=11% Similarity=0.097 Sum_probs=44.8
Q ss_pred cccccccchhHHHHHHh-------hccchhhH-HHHHHHHHHHHHHHHHHHHHhhcccCCCCcccccCCCCCCCCCchhh
Q 035534 109 CTLTNTLVLGVPLMKAM-------YGQMAVDL-VVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWH 180 (291)
Q Consensus 109 ~~~~N~~~~G~Pi~~~l-------~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 180 (291)
+.+.|...+..+-+..+ +.++.+.+ ..+....-.++.+.++.+++..++++ ..+
T Consensus 93 aa~~nav~Li~~s~~I~~EAi~R~~~P~~i~~~~ml~va~~GL~vN~~~a~ll~~~~~~---------------~lN--- 154 (296)
T COG1230 93 AAFLNALLLIVVSLLILWEAIQRLLAPPPIHYSGMLVVAIIGLVVNLVSALLLHKGHEE---------------NLN--- 154 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCccchHHHHHHHHHHHHHHHHHhhCCCcc---------------cch---
Confidence 45567766655544433 33332222 12222333455677777777643110 223
Q ss_pred HHHHHHHHHhhc--hhHHHHHHHHHHHHhhhhcCCCcchhHHH
Q 035534 181 LMKVVWLKLAKN--PNSYACVIGLAWAFVANRWHFKLPSIIEG 221 (291)
Q Consensus 181 ~~~~~~~~~~~n--P~~ia~ilGl~l~~~~~~~~~~lP~~i~~ 221 (291)
.|....+++.. -.+-+++.|++..++ ++..++++.+
T Consensus 155 -~r~a~LHvl~D~Lgsv~vIia~i~i~~~----~w~~~Dpi~s 192 (296)
T COG1230 155 -MRGAYLHVLGDALGSVGVIIAAIVIRFT----GWSWLDPILS 192 (296)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHh----CCCccchHHH
Confidence 34444444311 134566777777777 7777776653
No 71
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=26.39 E-value=1.1e+02 Score=20.66 Aligned_cols=25 Identities=20% Similarity=0.390 Sum_probs=17.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHhHhhhh
Q 035534 3 GWEDVYKVIVAMVPLYFALMLGYGSVK 29 (291)
Q Consensus 3 ~~~~~~~i~~~vlpi~lii~~G~~~~k 29 (291)
|++|+.+++. +-..+.+.+||++.+
T Consensus 2 ~i~DiiQii~--l~AlI~~pLGyl~~~ 26 (62)
T PF11120_consen 2 NISDIIQIII--LCALIFFPLGYLARR 26 (62)
T ss_pred CHHHHHHHHH--HHHHHHHhHHHHHHH
Confidence 5677777664 445567788999854
No 72
>PRK05274 2-keto-3-deoxygluconate permease; Provisional
Probab=26.06 E-value=1.6e+02 Score=27.06 Aligned_cols=84 Identities=13% Similarity=0.051 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 035534 195 SYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMAIGSI 273 (291)
Q Consensus 195 ~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~~~~~ 273 (291)
++-.++|-.++-+-+.. ..+-.+=....+--+.....+-+++.| +++.|..+...|+-......|+++.-++.+....
T Consensus 18 ~vpl~~g~~i~tf~P~~-~~~g~fT~alf~~g~~~l~~~~~~~~ga~i~~~~~~~~l~~g~~l~~~k~~~~~~~~~~~~~ 96 (326)
T PRK05274 18 LVPLLLGALINTFAPGA-LYFGSFTNALFKTGAVPILAVFLFCMGASINLRATGTVLKKGGTLLLTKFAVAALVGVIAGK 96 (326)
T ss_pred eHHHHHHHHHHHhCCcc-eeeCcchHHHHhcChHHHHHHHHHHcCCEEeccccchhhhhchhHHHHHHHHHHHHHHHhhh
Confidence 33445666666542211 223222222222344556668899999 8888876667778888889999988888888887
Q ss_pred HhCCCc
Q 035534 274 AAGLHG 279 (291)
Q Consensus 274 ~~~l~~ 279 (291)
.++-++
T Consensus 97 ~~g~~~ 102 (326)
T PRK05274 97 FIGEEG 102 (326)
T ss_pred cchHHH
Confidence 777644
No 73
>COG0475 KefB Kef-type K+ transport systems, membrane components [Inorganic ion transport and metabolism]
Probab=23.74 E-value=6.1e+02 Score=23.76 Aligned_cols=149 Identities=11% Similarity=-0.046 Sum_probs=0.0
Q ss_pred HHHHHHHHhHhhhhhccccChhhhhHHHHHHHHHHhHHHHHHHhccCCCCCc--chhh-HHHHHHHHHHHHHHHHHHHHH
Q 035534 16 PLYFALMLGYGSVKWWKIIAPEECAAINRLVCYFTLPLFTIEFTTHVDPFNM--NYRF-IGADAISKLIIVIVLAFWSMC 92 (291)
Q Consensus 16 pi~lii~~G~~~~k~~~~l~~~~~~~l~~lv~~v~lP~lif~~i~~~~~~~~--~~~~-i~~~~~~~~i~~~~~~~~~~~ 92 (291)
+++--..+|....+ ...-.++-.+.+..+-.-+++|......=.+.|+... ++.. +....+....=+...++.+|.
T Consensus 245 ~ilGAFlaGl~ls~-~~~~~~~l~~~i~~~~~~~fiplFFi~vG~~~dl~~l~~~~~~~l~~~~~~i~~K~~~~~~~~~~ 323 (397)
T COG0475 245 MILGAFLAGLLLSE-SEYRKHELEEKIEPFGDGLFIPLFFISVGMSLDLGVLLENLLLILLLVALAILGKILGAYLAARL 323 (397)
T ss_pred HHHHHHHHHHHhcc-cccchHHHHHHHHhHHhHHHHHHHHHHhhHHcCHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred hcCCcccchhhhhccccccccccchhHHHHHH-hhccchhhHHHHHHHHHHHHHHHHHHHHHhhcccCCCCcccc
Q 035534 93 SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKA-MYGQMAVDLVVQSSVFQSIVWLTIFLFVLEFRRSGNDSKDLE 166 (291)
Q Consensus 93 ~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~-l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (291)
.+.++ ++....++.....+...+...-+... .-.++-....+...+..+.+.-.+......+....+.+++..
T Consensus 324 ~g~~~-~~~~~~g~~~~~~ge~~~v~~~~~~~~~i~~~~~~~~v~~smi~t~i~~~~~~~~~~~~~~~~~~~~~~ 397 (397)
T COG0475 324 LGFSK-RLALGIGLLLRQGGEFAFVLAGIALGSAISEALLTAVVILSMITTPILPLLTPILLKRLLKKSEDEPEK 397 (397)
T ss_pred HcCcH-HHHHHHHhhhhhhhHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccCC
No 74
>PF00999 Na_H_Exchanger: Sodium/hydrogen exchanger family; InterPro: IPR006153 Sodium proton exchangers (NHEs) constitute a large family of integral membrane protein transporters that are responsible for the counter-transport of protons and sodium ions across lipid bilayers [, ]. These proteins are found in organisms across all domains of life. In archaea, bacteria, yeast and plants, these exchangers provide increased salt tolerance by removing sodium in exchanger for extracellular protons. In mammals they participate in the regulation of cell pH, volume, and intracellular sodium concentration, as well as for the reabsorption of NaCl across renal, intestinal, and other epithelia [, , , ]. Human NHE is also involved in heart disease, cell growth and in cell differentiation []. The removal of intracellular protons in exchange for extracellular sodium effectively eliminates excess acid from actively metabolising cells. In mammalian cells, NHE activity is found in both the plasma membrane and inner mitochondrial membrane. To date, nine mammalian isoforms have been identified (designated NHE1-NHE9) [, ]. These exchangers are highly-regulated (glyco)phosphoproteins, which, based on their primary structure, appear to contain 10-12 membrane-spanning regions (M) at the N terminus and a large cytoplasmic region at the C terminus. The transmembrane regions M3-M12 share identity with other members of the family. The M6 and M7 regions are highly conserved. Thus, this is thought to be the region that is involved in the transport of sodium and hydrogen ions. The cytoplasmic region has little similarity throughout the family. There is some evidence that the exchangers may exist in the cell membrane as homodimers, but little is currently known about the mechanism of their antiport []. This entry represents a number of cation/proton exchangers, including Na+/H+ exchangers, K+/H+ exchangers and Na+(K+,Li+,Rb+)/H+ exchangers.; GO: 0015299 solute:hydrogen antiporter activity, 0006812 cation transport, 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2L0E_A 2HTG_A 2KBV_A 2E30_B 1Y4E_A.
Probab=23.04 E-value=32 Score=31.67 Aligned_cols=85 Identities=13% Similarity=-0.025 Sum_probs=0.4
Q ss_pred hchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHH-hhhhHHHHHHhc-CcCcccc---ccchhHHHHHHHHHHHHHH
Q 035534 191 KNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMS-KAGTGTAMFSMG-ELGEKLL---ACGPGLTALGMVLKFIAGP 265 (291)
Q Consensus 191 ~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~-~~~~plaL~~iG-~l~~~~~---~~~~~~~~~~~~~rlil~P 265 (291)
.+|.+-+.+.|++++-. +..+-+.+-++.+. +...|+-...+| .++.+.. ...+.......+.+++.-+
T Consensus 234 ~s~~l~af~~Gl~~~~~------~~~~~~~~~l~~~~~~~~~~lfF~~iG~~~~~~~l~~~~~~~~~~~~~~~~~~~~k~ 307 (380)
T PF00999_consen 234 LSGILGAFIAGLILSNS------PFAERLEEKLESFWYGFFIPLFFVFIGMSLDFSSLFNSPSVIILVLLLLIAILLGKF 307 (380)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccceeeeeehccccc------cccchhhhcccchhhHHHhhHHhhhhcccccccccccchhhhhhHHHHHHHHHHhhh
Confidence 46788888899999832 22232555566666 899999999999 7776554 3344455556666666667
Q ss_pred HHHHHHHHHhCCCchh
Q 035534 266 AAMAIGSIAAGLHGDV 281 (291)
Q Consensus 266 li~~~~~~~~~l~~~~ 281 (291)
+..+..+...+.+...
T Consensus 308 ~~~~~~~~~~~~~~~~ 323 (380)
T PF00999_consen 308 IGVYLASRLFGIPWKE 323 (380)
T ss_dssp ---------------H
T ss_pred ceeehhhhhcccccch
Confidence 7776666666555443
No 75
>TIGR00946 2a69 he Auxin Efflux Carrier (AEC) Family.
Probab=22.52 E-value=4.1e+02 Score=23.81 Aligned_cols=92 Identities=10% Similarity=-0.078 Sum_probs=54.1
Q ss_pred chhHHHHHHHHHH-HHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccccchhHHHHHHHHHHHHHHHHHH
Q 035534 192 NPNSYACVIGLAW-AFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLACGPGLTALGMVLKFIAGPAAMA 269 (291)
Q Consensus 192 nP~~ia~ilGl~l-~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~~~~~~~~~~~~~rlil~Pli~~ 269 (291)
-|.+.-+.+|.++ .-. +.--.+.....-++.=+.+.|..+|.-= +.+.+...............-+...-++.+
T Consensus 11 lpv~~ii~lG~~~~~r~----~~~~~~~~~~l~~~v~~i~lP~lif~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 86 (321)
T TIGR00946 11 LPILVVILLGYILGKRF----GILDEEHASGINRFVINFALPLTIFHSISTTLADILQKSQSPVVLFLWGAFSGSYALIW 86 (321)
T ss_pred HHHHHHHHHHHHHHHHh----CcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4788888899999 555 5555567777888888889998888765 322210111122222233333444555566
Q ss_pred HHHH-HhCCCchhhhhhee
Q 035534 270 IGSI-AAGLHGDVLRVSII 287 (291)
Q Consensus 270 ~~~~-~~~l~~~~~~v~vl 287 (291)
.+.+ .++.|...+.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~~~~ 105 (321)
T TIGR00946 87 LITKPLFKADYGKLSGFLL 105 (321)
T ss_pred HHHHHHHhcccchhhHHHH
Confidence 6666 56666655544433
No 76
>COG2211 MelB Na+/melibiose symporter and related transporters [Carbohydrate transport and metabolism]
Probab=22.38 E-value=7.2e+02 Score=24.08 Aligned_cols=27 Identities=19% Similarity=0.144 Sum_probs=19.4
Q ss_pred HHHHHHHHHhhchhHHHHHHHHHHHHh
Q 035534 181 LMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 181 ~~~~~~~~~~~nP~~ia~ilGl~l~~~ 207 (291)
.+++.+..+++|++..-.++..++...
T Consensus 224 ~~~~~~~~~~~Nrp~~~~l~~~l~~~~ 250 (467)
T COG2211 224 KLKDSFLLIFKNRPLLLLLLMNLLLFI 250 (467)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 367777778899888777776666555
No 77
>PRK09546 zntB zinc transporter; Reviewed
Probab=21.80 E-value=3.2e+02 Score=24.63 Aligned_cols=24 Identities=17% Similarity=-0.034 Sum_probs=18.1
Q ss_pred HHHHHHHHHhHHHHHHHhccCCCC
Q 035534 42 INRLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 42 l~~lv~~v~lP~lif~~i~~~~~~ 65 (291)
.-+++.-+++|..++.+++.++..
T Consensus 266 ~Ltilt~IflPlT~IaGiyGMNf~ 289 (324)
T PRK09546 266 TMSLMAMVFLPTTFLTGLFGVNLG 289 (324)
T ss_pred HHHHHHHHHHHHHHHHhhhccccC
Confidence 334555688999999999988755
Done!