Query 035534
Match_columns 291
No_of_seqs 125 out of 1059
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 05:41:03 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035534.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035534hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3zux_A Transporter, ASBTNM; tr 97.4 0.00038 1.3E-08 62.6 7.5 96 187-290 13-112 (332)
2 3zux_A Transporter, ASBTNM; tr 97.0 0.0066 2.3E-07 54.4 12.1 68 75-145 234-303 (332)
3 2iub_A CORA, divalent cation t 20.2 1E+02 0.0035 27.1 4.5 26 39-65 303-328 (363)
4 4ev6_A Magnesium transport pro 20.1 2E+02 0.007 24.8 6.4 21 45-65 284-304 (339)
5 2lx0_A Membrane fusion protein 11.8 2E+02 0.007 15.2 2.8 22 8-29 6-27 (32)
6 2k1k_A Ephrin type-A receptor 11.5 2.4E+02 0.0083 16.1 3.0 21 9-29 16-36 (38)
7 2lat_A Dolichyl-diphosphooligo 5.0 5.5E+02 0.019 14.6 3.7 25 1-25 1-25 (37)
8 3rhw_A Avermectin-sensitive gl 4.6 1.5E+03 0.051 19.0 8.5 48 8-60 215-263 (347)
9 2l8s_A Integrin alpha-1; trans 4.5 7.3E+02 0.025 15.3 4.3 26 71-96 12-39 (54)
10 2onk_C Molybdate/tungstate ABC 4.3 1.4E+03 0.048 18.4 7.0 135 72-219 82-229 (284)
No 1
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.36 E-value=0.00038 Score=62.56 Aligned_cols=96 Identities=20% Similarity=0.123 Sum_probs=73.8
Q ss_pred HHHhhchhHHHHHHHHHHHHhhhhcCCCcchhHHHHHHHHHhhhhHHHHHHhc-CcCccccc---cchhHHHHHHHHHHH
Q 035534 187 LKLAKNPNSYACVIGLAWAFVANRWHFKLPSIIEGSILIMSKAGTGTAMFSMG-ELGEKLLA---CGPGLTALGMVLKFI 262 (291)
Q Consensus 187 ~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~i~~~l~~l~~~~~plaL~~iG-~l~~~~~~---~~~~~~~~~~~~rli 262 (291)
.+.+.++..+.++++.+++.. .|+... .++..-....+++|+..| +++.++.+ +++|........+++
T Consensus 13 ~~~l~~~~~l~i~~~~~lg~~-------~P~~~~-~~~~~i~~~l~~~mf~~G~~l~~~~l~~~~~~~~~~~~~l~~~~v 84 (332)
T 3zux_A 13 SSFIGKTFSLWAALFAAAAFF-------APDTFK-WAGPYIPWLLGIIMFGMGLTLKPSDFDILFKHPKVVIIGVIAQFA 84 (332)
T ss_dssp HHHHHHTHHHHHHHHHHHHHH-------CGGGTG-GGGGGHHHHHHHHHHHHHHHCCGGGGHHHHHSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-------cchhhh-hhHHHHHHHHHHHHHHHHhCCCHHHHHHHHhCcHHHHHHHHHHHH
Confidence 455678888888888888776 333211 233344567889999999 88776655 566777888999999
Q ss_pred HHHHHHHHHHHHhCCCchhhhhheeecc
Q 035534 263 AGPAAMAIGSIAAGLHGDVLRVSIIQVT 290 (291)
Q Consensus 263 l~Pli~~~~~~~~~l~~~~~~v~vl~aa 290 (291)
++|+++++++..+++|+......+++++
T Consensus 85 i~Pll~~~l~~~~~l~~~~~~Glil~~~ 112 (332)
T 3zux_A 85 IMPATAWCLSKLLNLPAEIAVGVILVGC 112 (332)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCChHHHHHHHHHhc
Confidence 9999999999999999998888877765
No 2
>3zux_A Transporter, ASBTNM; transport protein, membrane protein; HET: TCH LDA PTY; 2.20A {Neisseria meningitidis} PDB: 3zuy_A*
Probab=97.03 E-value=0.0066 Score=54.37 Aligned_cols=68 Identities=13% Similarity=-0.010 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhcc--chhhHHHHHHHHHHHHH
Q 035534 75 DAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ--MAVDLVVQSSVFQSIVW 145 (291)
Q Consensus 75 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~--~~~~~~~~~~~~~~~~~ 145 (291)
..+...+.|.+++..+|..+.++ .++.-.++. ++..|+ -+|+|+....||+ .......+|.+.|++.-
T Consensus 234 ~~l~~~~~~~lg~~~~r~~~~~~-~~~~ti~~e-~G~qNs-~lai~lA~~~F~~~p~~alp~~iy~~~q~i~~ 303 (332)
T 3zux_A 234 VVLHNGIGYLLGFFAAKWTGLPY-DAQKALTIE-VGMQNS-GLAAALAAAHFAAAPVVAVPGALFSVWHNISG 303 (332)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCH-HHHHHHHHH-HHCCCH-HHHHHHHHHHSTTCGGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCCH-hHhhhhhhh-hhhccH-HHHHHHHHHHcCCCchHHHHHHHHHHHHHHHH
Confidence 33444567778888899877665 343333454 455677 5999999999963 33334445555555443
No 3
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=20.20 E-value=1e+02 Score=27.09 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=16.4
Q ss_pred hhHHHHHHHHHHhHHHHHHHhccCCCC
Q 035534 39 CAAINRLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 39 ~~~l~~lv~~v~lP~lif~~i~~~~~~ 65 (291)
++.++ .+--+++|..++.+++.+++.
T Consensus 303 mk~LT-iit~IflP~T~IaGiyGMNf~ 328 (363)
T 2iub_A 303 MKVLT-IIATIFMPLTFIAGIYGMNFE 328 (363)
T ss_dssp HHHHH-HHHHHHHHHHHHTTSCC----
T ss_pred HHHHH-HHHHHHHHHHHHHhhhcccCC
Confidence 44343 445689999999999988765
No 4
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.07 E-value=2e+02 Score=24.79 Aligned_cols=21 Identities=10% Similarity=-0.197 Sum_probs=17.1
Q ss_pred HHHHHHhHHHHHHHhccCCCC
Q 035534 45 LVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 45 lv~~v~lP~lif~~i~~~~~~ 65 (291)
.+--+++|..++.+++.+++.
T Consensus 284 iit~IflP~T~IaGiyGMNf~ 304 (339)
T 4ev6_A 284 MVTTIFAVPMWITGIYGMNFS 304 (339)
T ss_dssp HHHHHSSHHHHHHHHTTCCCS
T ss_pred HHHHHHHHHHHHHhhccCcCC
Confidence 445588999999999988765
No 5
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=11.75 E-value=2e+02 Score=15.18 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHHHHHhHhhhh
Q 035534 8 YKVIVAMVPLYFALMLGYGSVK 29 (291)
Q Consensus 8 ~~i~~~vlpi~lii~~G~~~~k 29 (291)
+.++.....++..++.|+++-|
T Consensus 6 weviaglvalltflafgfwlfk 27 (32)
T 2lx0_A 6 WEVIAGLVALLTFLAFGFWLFK 27 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3455666678888999998744
No 6
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=11.48 E-value=2.4e+02 Score=16.05 Aligned_cols=21 Identities=5% Similarity=-0.118 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHhHhhhh
Q 035534 9 KVIVAMVPLYFALMLGYGSVK 29 (291)
Q Consensus 9 ~i~~~vlpi~lii~~G~~~~k 29 (291)
.++..+.-+.++.++++++.|
T Consensus 16 iVvG~v~gv~li~~l~~~~~r 36 (38)
T 2k1k_A 16 VIFGLLLGAALLLGILVFRSR 36 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC
T ss_pred eehHHHHHHHHHHHHHHHHee
Confidence 345555667777888887755
No 7
>2lat_A Dolichyl-diphosphooligosaccharide--protein glycosyltransferase subunit 4; membrane protein, oligosaccharyltransferase, integral membra protein; NMR {Homo sapiens}
Probab=5.00 E-value=5.5e+02 Score=14.58 Aligned_cols=25 Identities=20% Similarity=0.097 Sum_probs=17.4
Q ss_pred CcChHHHHHHHHHHHHHHHHHHHhH
Q 035534 1 MIGWEDVYKVIVAMVPLYFALMLGY 25 (291)
Q Consensus 1 ~~~~~~~~~i~~~vlpi~lii~~G~ 25 (291)
||+=+|.+...+.......++.+.|
T Consensus 1 MIsD~qL~~lan~lG~~~~~LIVlY 25 (37)
T 2lat_A 1 MITDVQLAIFANMLGVSLFLLVVLY 25 (37)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888877776666555555555
No 8
>3rhw_A Avermectin-sensitive glutamate-gated chloride CHA alpha; membrane protein, transport protein, Cys-loop receptor, LIGA ION channel, neurotransmitter receptor; HET: NAG IVM LMT UND; 3.26A {Caenorhabditis elegans} PDB: 3ri5_A* 3ria_A* 3rif_A*
Probab=4.55 E-value=1.5e+03 Score=19.02 Aligned_cols=48 Identities=10% Similarity=0.103 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHhHhhhhhccccChhh-hhHHHHHHHHHHhHHHHHHHhc
Q 035534 8 YKVIVAMVPLYFALMLGYGSVKWWKIIAPEE-CAAINRLVCYFTLPLFTIEFTT 60 (291)
Q Consensus 8 ~~i~~~vlpi~lii~~G~~~~k~~~~l~~~~-~~~l~~lv~~v~lP~lif~~i~ 60 (291)
+-+++.++|.+++..+-++. - +++++. ...++ +...+.+-..+|....
T Consensus 215 ~y~~~l~iP~~li~~ls~~s-F---~lp~~~~~~Rv~-lgit~lLt~tv~~~~~ 263 (347)
T 3rhw_A 215 FYLLQLYIPSCMLVIVSWVS-F---WFDRTAIPARVT-LGVTTLLTMTAQSAGI 263 (347)
T ss_dssp HHHHHTHHHHHHHHHHHHTT-T---TSCTTCHHHHHH-HHHHHHHHHHHHHHHH
T ss_pred EEEEEeehhHHHHHHHhheE-E---eccCCCCcceEE-EEeehHHHHHHHHHHH
Confidence 45677788988888887765 2 255554 23332 4444555555555444
No 9
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=4.52 E-value=7.3e+02 Score=15.35 Aligned_cols=26 Identities=8% Similarity=0.076 Sum_probs=10.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHH--HhcCC
Q 035534 71 FIGADAISKLIIVIVLAFWSM--CSKKG 96 (291)
Q Consensus 71 ~i~~~~~~~~i~~~~~~~~~~--~~~~~ 96 (291)
.+...+.+.++..++.+++-| ++|++
T Consensus 12 Ii~svl~GLLLL~Lii~~LwK~GFFKR~ 39 (54)
T 2l8s_A 12 ILLSAFAGLLLLMLLILALWKIGFFKRP 39 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCcccCC
Confidence 333444444433333344333 44443
No 10
>2onk_C Molybdate/tungstate ABC transporter, permease protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: f.58.1.1
Probab=4.31 E-value=1.4e+03 Score=18.35 Aligned_cols=135 Identities=9% Similarity=-0.067 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccchhhhhccccccccccchhHHHHHHhhccch-------------hhHHHHHH
Q 035534 72 IGADAISKLIIVIVLAFWSMCSKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQMA-------------VDLVVQSS 138 (291)
Q Consensus 72 i~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~~~-------------~~~~~~~~ 138 (291)
.....++.++...+++...|..++ .++....+......=-...-.+....+|++.+ ....++..
T Consensus 82 ~~~~~l~~~lg~~~a~~l~~~~~~---~~~~~~~~~~~~~~iP~~v~~~~~~~~~~~~g~~~~~lg~~~~~~~~~~il~~ 158 (284)
T 2onk_C 82 LISTLIAVIFGTPLAYILARKSFP---GKSVVEGIVDLPVVIPHTVAGIALLVVFGSSGLIGSFSPLKFVDALPGIVVAM 158 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSCCCS---SHHHHHHHHHHHHHSCHHHHHHHHHHHHSTTSTTTTTCSSCCTTSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHccCcc---hHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCChHhhhccccccchHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHhhcccCCCCcccccCCCCCCCCCchhhHHHHHHHHHhhchhHHHHHHHHHHHHhhhhcCCCcchh
Q 035534 139 VFQSIVWLTIFLFVLEFRRSGNDSKDLEEGHVTSSSRPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFVANRWHFKLPSI 218 (291)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~~~~~~~~lP~~ 218 (291)
......+......-.-..-.++-.|..+.+ +.+.++.+++...-..+.+...+.+..++.... +...|..
T Consensus 159 ~~~~~p~~~~~~~~~l~~i~~~l~eAA~~~------Gas~~~~f~~I~lP~~~p~i~~~~~l~~~~~~~----~f~~~~~ 228 (284)
T 2onk_C 159 LFVSVPIYINQAKEGFASVDVRLEHVARTL------GSSPLRVFFTVSLPLSVRHIVAGAIMSWARGIS----EFGAVVV 228 (284)
T ss_dssp HHHHHHHHHHHHHHHHHHSCHHHHHHHHHT------TCCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH----CCHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHHc------CCCHhhHHHHhhHHhhHHHHHHHHHHHHHHHHH----HHHHHHH
Q ss_pred H
Q 035534 219 I 219 (291)
Q Consensus 219 i 219 (291)
+
T Consensus 229 l 229 (284)
T 2onk_C 229 I 229 (284)
T ss_dssp T
T ss_pred H
Done!