Query 035534
Match_columns 291
No_of_seqs 125 out of 1059
Neff 8.5
Searched_HMMs 13730
Date Mon Mar 25 05:41:10 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035534.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035534hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2iuba2 f.17.3.1 (A:286-349) M 24.6 65 0.0047 19.0 4.7 26 39-65 6-31 (64)
2 d2r6gg1 f.58.1.1 (G:7-296) Mal 9.8 3.4E+02 0.025 20.3 7.9 33 175-207 190-222 (290)
3 d3d31c1 f.58.1.1 (C:13-260) Su 7.7 3.8E+02 0.028 19.3 8.1 32 176-207 167-198 (248)
4 d1v54g_ f.23.2.1 (G:) Mitochon 6.1 1.5E+02 0.011 18.8 2.2 23 38-60 12-34 (84)
5 d1q90g_ f.23.26.1 (G:) PetG su 4.1 2.6E+02 0.019 13.6 1.8 11 193-203 4-14 (30)
6 d1pw4a_ f.38.1.1 (A:) Glycerol 3.6 8.1E+02 0.059 18.3 13.3 21 184-204 240-260 (447)
7 d2e74f1 f.23.25.1 (F:1-32) Pet 3.4 3.2E+02 0.024 13.2 3.7 24 132-155 6-29 (32)
8 d1t4aa_ d.284.1.1 (A:) PurS su 3.1 3.3E+02 0.024 16.6 2.2 15 181-195 57-71 (80)
9 d1gtda_ d.284.1.1 (A:) PurS su 2.8 2.1E+02 0.015 17.7 0.9 25 171-195 47-71 (82)
10 d1rc2a_ f.19.1.1 (A:) Aquapori 2.4 9.6E+02 0.07 16.8 7.4 90 50-142 62-152 (231)
No 1
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=24.63 E-value=65 Score=19.00 Aligned_cols=26 Identities=12% Similarity=0.084 Sum_probs=16.5
Q ss_pred hhHHHHHHHHHHhHHHHHHHhccCCCC
Q 035534 39 CAAINRLVCYFTLPLFTIEFTTHVDPF 65 (291)
Q Consensus 39 ~~~l~~lv~~v~lP~lif~~i~~~~~~ 65 (291)
.+.++ .+--+++|..+..++...+.+
T Consensus 6 mk~lT-~it~iflP~t~i~gifGMN~~ 31 (64)
T d2iuba2 6 MKVLT-IIATIFMPLTFIAGIYGMNFE 31 (64)
T ss_dssp HHHHH-HHHHHHHHHHHHTTSCC----
T ss_pred HHHHH-HHHHHHHHHHHHHhhhccCCC
Confidence 44444 455699999999999987644
No 2
>d2r6gg1 f.58.1.1 (G:7-296) Maltose transport system permease protein MalG {Escherichia coli [TaxId: 562]}
Probab=9.82 E-value=3.4e+02 Score=20.29 Aligned_cols=33 Identities=15% Similarity=0.259 Sum_probs=20.8
Q ss_pred CCchhhHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 035534 175 RPPFWHLMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 175 ~~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~ 207 (291)
..+.++.++++..-..+.....+.++.++.+..
T Consensus 190 GAs~~~~f~~I~lPl~~p~i~~~~il~fi~~~~ 222 (290)
T d2r6gg1 190 GATPWQAFRLVLLPLSVPILAVVFILSFIAAIT 222 (290)
T ss_dssp TCCHHHHHHHTTHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHhhhhhhhhHHHHHhhhhcc
Confidence 345555566665555666666677777777665
No 3
>d3d31c1 f.58.1.1 (C:13-260) Sulfate/molybdate ABC transporter, permease protein {Methanosarcina acetivorans [TaxId: 2214]}
Probab=7.73 E-value=3.8e+02 Score=19.28 Aligned_cols=32 Identities=25% Similarity=0.306 Sum_probs=20.8
Q ss_pred CchhhHHHHHHHHHhhchhHHHHHHHHHHHHh
Q 035534 176 PPFWHLMKVVWLKLAKNPNSYACVIGLAWAFV 207 (291)
Q Consensus 176 ~~~~~~~~~~~~~~~~nP~~ia~ilGl~l~~~ 207 (291)
.+.++.++++..-..+.+.+.+.++++..+..
T Consensus 167 as~~~~~~~I~lP~~~p~i~~~~~l~f~~~~~ 198 (248)
T d3d31c1 167 APLWKAFFFVTLPLSARYLLIGSVMTWARAIS 198 (248)
T ss_dssp CCHHHHHHHTHHHHHHHHHHHHHHHHHHHHHT
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555566655555666677777777777765
No 4
>d1v54g_ f.23.2.1 (G:) Mitochondrial cytochrome c oxidase subunit VIa {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.10 E-value=1.5e+02 Score=18.77 Aligned_cols=23 Identities=13% Similarity=0.057 Sum_probs=17.4
Q ss_pred hhhHHHHHHHHHHhHHHHHHHhc
Q 035534 38 ECAAINRLVCYFTLPLFTIEFTT 60 (291)
Q Consensus 38 ~~~~l~~lv~~v~lP~lif~~i~ 60 (291)
+.+.-.++.+++++||++...+.
T Consensus 12 ~~~lWkkis~~va~P~i~l~~~n 34 (84)
T d1v54g_ 12 GARTWRFLTFGLALPSVALCTLN 34 (84)
T ss_dssp CHHHHHHHHHHTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556678899999999987664
No 5
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=4.06 E-value=2.6e+02 Score=13.61 Aligned_cols=11 Identities=36% Similarity=0.555 Sum_probs=5.0
Q ss_pred hhHHHHHHHHH
Q 035534 193 PNSYACVIGLA 203 (291)
Q Consensus 193 P~~ia~ilGl~ 203 (291)
|.+-++++|++
T Consensus 4 ~ll~GivlGli 14 (30)
T d1q90g_ 4 PLLCGIVLGLV 14 (30)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHhHHHhhH
Confidence 44444444443
No 6
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=3.58 E-value=8.1e+02 Score=18.27 Aligned_cols=21 Identities=10% Similarity=0.045 Sum_probs=12.9
Q ss_pred HHHHHHhhchhHHHHHHHHHH
Q 035534 184 VVWLKLAKNPNSYACVIGLAW 204 (291)
Q Consensus 184 ~~~~~~~~nP~~ia~ilGl~l 204 (291)
...++.++||.++.......+
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~ 260 (447)
T d1pw4a_ 240 IFMQYVLPNKLLWYIAIANVF 260 (447)
T ss_dssp HHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHhhh
Confidence 345667788877765554443
No 7
>d2e74f1 f.23.25.1 (F:1-32) PetM subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.38 E-value=3.2e+02 Score=13.24 Aligned_cols=24 Identities=13% Similarity=-0.078 Sum_probs=16.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhh
Q 035534 132 DLVVQSSVFQSIVWLTIFLFVLEF 155 (291)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~~~~~~ 155 (291)
.++.+.+.+-.++-|.+|..++..
T Consensus 6 l~aa~lsfglifvgwglgalllki 29 (32)
T d2e74f1 6 LYAALLSFGLIFVGWGLGVLLLKI 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHhHHHHHHhhh
Confidence 355666666667778888877754
No 8
>d1t4aa_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Bacillus subtilis [TaxId: 1423]}
Probab=3.13 E-value=3.3e+02 Score=16.55 Aligned_cols=15 Identities=33% Similarity=0.228 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhchhH
Q 035534 181 LMKVVWLKLAKNPNS 195 (291)
Q Consensus 181 ~~~~~~~~~~~nP~~ 195 (291)
..+....+++.||.+
T Consensus 57 ~v~~~c~~lLaNpvI 71 (80)
T d1t4aa_ 57 LVKEMCEKLLANTVI 71 (80)
T ss_dssp HHHHHHHHTTCCTTT
T ss_pred HHHHHHHHhcCCcce
Confidence 467788899999964
No 9
>d1gtda_ d.284.1.1 (A:) PurS subunit of FGAM synthetase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=2.83 E-value=2.1e+02 Score=17.67 Aligned_cols=25 Identities=16% Similarity=0.044 Sum_probs=0.0
Q ss_pred CCCCCCchhhHHHHHHHHHhhchhH
Q 035534 171 TSSSRPPFWHLMKVVWLKLAKNPNS 195 (291)
Q Consensus 171 e~~~~~~~~~~~~~~~~~~~~nP~~ 195 (291)
|++++....+..+...++++.||.+
T Consensus 47 ~~~~~e~a~~~v~~~c~~lLaNpvI 71 (82)
T d1gtda_ 47 DEDSLEAVEREVEDMCQRLLCNPVI 71 (82)
T ss_dssp CCSCHHHHHHHHHHHHHHTTCCTTT
T ss_pred cCCCHHHHHHHHHHHHHHHcCCcce
No 10
>d1rc2a_ f.19.1.1 (A:) Aquaporin Z {Escherichia coli [TaxId: 562]}
Probab=2.44 E-value=9.6e+02 Score=16.83 Aligned_cols=90 Identities=12% Similarity=0.013 Sum_probs=0.0
Q ss_pred HhHHHHHHHhccCCCCCcchhhHHHHHHHHHHHHHHHHHHHHH-hcCCcccchhhhhccccccccccchhHHHHHHhhcc
Q 035534 50 TLPLFTIEFTTHVDPFNMNYRFIGADAISKLIIVIVLAFWSMC-SKKGSYFSWCITNFSLCTLTNTLVLGVPLMKAMYGQ 128 (291)
Q Consensus 50 ~lP~lif~~i~~~~~~~~~~~~i~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~N~~~~G~Pi~~~l~G~ 128 (291)
+.|+..+......+.+ +.-...+.+++++.-+++..+.+. .+++...+..........++++..-+.+..+.++.|
T Consensus 62 ~NPAVTla~~~~g~~~---~~~~~~Yi~aQ~lGa~~g~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E 138 (231)
T d1rc2a_ 62 FNPAVTIGLWAGGRFP---AKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVE 138 (231)
T ss_dssp CSHHHHHHHHHTTCSC---TTTHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHCTTCCCCTTSSSSCCCHHHHHHHH
T ss_pred CCCchhHHHHhcCCCc---HHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccCCcccchhhhhHHH
Q ss_pred chhhHHHHHHHHHH
Q 035534 129 MAVDLVVQSSVFQS 142 (291)
Q Consensus 129 ~~~~~~~~~~~~~~ 142 (291)
.-.....+..+...
T Consensus 139 ~i~t~~l~~~i~~~ 152 (231)
T d1rc2a_ 139 LVLSAGFLLVIHGA 152 (231)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhh
Done!