BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035535
(518 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 66.6 bits (161), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y DML+ E+RK++ + F C
Sbjct: 238 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 297
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 298 DCFRCQTQD 306
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y DML+ E+RK++ + F C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 262
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 263 DCFRCQTQD 271
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y DML+ E+RK++ + F C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 261
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 262 DCFRCQTQD 270
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y DML+ E+RK++ + F C
Sbjct: 202 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 261
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 262 DCFRCQTQD 270
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 44/69 (63%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y DML+ E+RK++ + F C
Sbjct: 204 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFEC 263
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 264 DCFRCQTQD 272
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 62.0 bits (149), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 317 SFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPL-EKRKEMSKTWGFHC 375
S +NHSC PN V G ++++ A RD++ GEE+T Y D L E+RK++ + F C
Sbjct: 203 SLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQLRDQYCFEC 262
Query: 376 KCKRCKFEE 384
C RC+ ++
Sbjct: 263 DCFRCQTQD 271
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
+ +NHSC PN + G V A +++K GEE+ +Y D+L P E R + + ++ F
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
C+C+ C ++ +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
+ +NHSC PN + G V A +++K GEE+ +Y D+L P E R + + ++ F
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
C+C+ C ++ +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 54.3 bits (129), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 46/81 (56%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
+ +NHSC PN + G V A +++K GEE+ +Y D+L P E R + + ++ F
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
C+C+ C ++ +K E+ ++
Sbjct: 262 CECQECTTKDKDKAKVEIRKL 282
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 45/81 (55%), Gaps = 1/81 (1%)
Query: 316 ASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFH 374
+ +NHSC PN + G V A +++ G+E+ +Y D+L P E R + + ++ F
Sbjct: 202 VALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFT 261
Query: 375 CKCKRCKFEEGMSSKQELSEI 395
C+C+ C ++ +K E+ ++
Sbjct: 262 CECRECTTKDKDKAKVEVRKL 282
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/45 (46%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
Query: 316 ASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLL 359
A+FINH C PN + V G D V A RD++ GEEI+ Y D
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFF 250
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 41.2 bits (95), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 36/78 (46%), Gaps = 14/78 (17%)
Query: 318 FINHSCSPNARRV-------------HVGDYIIVHASRDVKAGEEITFAYFDML-LPLEK 363
+NH C PN + H I + A + GEE+T +Y D L L E+
Sbjct: 203 LVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRALGKISEGEELTVSYIDFLHLSEER 262
Query: 364 RKEMSKTWGFHCKCKRCK 381
R+++ K + F C C+ C+
Sbjct: 263 RRQLKKQYYFDCSCEHCQ 280
>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1
Sti1 From Homo Sapiens, Northeast Structural Genomics
Consortium Target Hr4403e
Length = 133
Score = 41.2 bits (95), Expect = 0.002, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 34/57 (59%)
Query: 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
NRA ++L +F AL+DCE+ +++E + K K L ++ Y+ A+D +++ L
Sbjct: 55 NRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKAL 111
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 39/70 (55%), Gaps = 10/70 (14%)
Query: 316 ASFINHSCSPN--ARRVHVG--DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTW 371
A FINHSC PN +R +++ +I++ A R + GEE+T +D P+E + S
Sbjct: 125 ARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELT---YDYKFPIE---DASNKL 178
Query: 372 GFHCKCKRCK 381
+C K+C+
Sbjct: 179 PCNCGAKKCR 188
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 26/41 (63%), Gaps = 5/41 (12%)
Query: 170 AVQISKSEISGRGLFATKNVEAGTLFL-----VTKAIATER 205
AV + +S I GRGLF +N++AG + + V ++I T++
Sbjct: 53 AVGVYRSPIHGRGLFCKRNIDAGEMVIEYAGNVIRSIQTDK 93
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 34/67 (50%), Gaps = 10/67 (14%)
Query: 316 ASFINHSCSPNARRVHV-GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFH 374
A+FINH C PN + V G+ V RD++ G+E+T Y + EK + H
Sbjct: 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG-EKNE--------H 227
Query: 375 CKCKRCK 381
C+C C+
Sbjct: 228 CECHTCE 234
>pdb|1ML9|A Chain A, Structure Of The Neurospora Set Domain Protein Dim-5, A
Histone Lysine Methyltransferase
pdb|1PEG|A Chain A, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
pdb|1PEG|B Chain B, Structural Basis For The Product Specificity Of Histone
Lysine Methyltransferases
Length = 302
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/76 (38%), Positives = 36/76 (47%), Gaps = 15/76 (19%)
Query: 318 FINHSCSPN-ARRVHVGDYIIVH-------ASRDVKAGEEITFAYFDMLLPLE------- 362
FINHSC PN A VGD+ H A +D+ G E+TF Y + L LE
Sbjct: 223 FINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPS 282
Query: 363 KRKEMSKTWGFHCKCK 378
K EM+K KC+
Sbjct: 283 KISEMTKCLCGTAKCR 298
>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt
pdb|2VYI|B Chain B, Crystal Structure Of The Tpr Domain Of Human Sgt
Length = 131
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 22/57 (38%), Positives = 37/57 (64%)
Query: 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
NRA A S+L ++ A++DCE+A+ I+ ++ KA G L SLN++ A+ +K+ L
Sbjct: 51 NRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKAL 107
>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1
Length = 258
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 54/130 (41%), Gaps = 23/130 (17%)
Query: 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETXXXXXXXXXXXXXXXXXXXN 60
E ++ R + E + +W +V+ YT+ I N
Sbjct: 137 EKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------ARGYSN 178
Query: 61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ 120
RA A ++L F A+ DC +A++ + + +A + K +++ Y+ AL ETL DA
Sbjct: 179 RAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL----ETL-DAA 233
Query: 121 ASGSLETVNG 130
+ E NG
Sbjct: 234 RTKDAEVNNG 243
>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1
Length = 126
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 30/127 (23%), Positives = 53/127 (41%), Gaps = 23/127 (18%)
Query: 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETXXXXXXXXXXXXXXXXXXXNRAE 63
++ R + E + +W +V+ YT+ I NRA
Sbjct: 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPED------------------ARGYSNRAA 46
Query: 64 ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG 123
A ++L F A+ DC +A++ + + +A + K +++ Y+ AL ETL DA +
Sbjct: 47 ALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASAL----ETL-DAARTK 101
Query: 124 SLETVNG 130
E NG
Sbjct: 102 DAEVNNG 108
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 315 LASFINHSCSPNARRVHVG--------DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE 366
++ FINH C PN V V I +SRD++ GEE+ F Y D ++
Sbjct: 197 ISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIK---- 252
Query: 367 MSKTWGFHCKCKRCK 381
SK + C ++CK
Sbjct: 253 -SKYFTCQCGSEKCK 266
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 37.4 bits (85), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 13/75 (17%)
Query: 315 LASFINHSCSPNARRVHVG--------DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKE 366
++ FINH C PN V V I +SRD++ GEE+ F Y D ++
Sbjct: 195 ISRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDIK---- 250
Query: 367 MSKTWGFHCKCKRCK 381
SK + C ++CK
Sbjct: 251 -SKYFTCQCGSEKCK 264
>pdb|2R3A|A Chain A, Methyltransferase Domain Of Human Suppressor Of
Variegation 3-9 Homolog 2
Length = 300
Score = 35.8 bits (81), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 27/48 (56%), Gaps = 8/48 (16%)
Query: 315 LASFINHSCSPNARRVHVG--------DYIIVHASRDVKAGEEITFAY 354
++ F+NHSC PN + +V I + ++R + AGEE+TF Y
Sbjct: 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDY 262
>pdb|3OPE|A Chain A, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
pdb|3OPE|B Chain B, Structural Basis Of Auto-Inhibitory Mechanism Of Histone
Methyltransferase
Length = 222
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 4/54 (7%)
Query: 316 ASFINHSCSPNAR----RVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRK 365
A FINHSC PN V+ I ++A +D+ AG E+T+ Y +EK++
Sbjct: 147 ARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQQ 200
>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From
C.Elegans
Length = 126
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/74 (28%), Positives = 38/74 (51%), Gaps = 1/74 (1%)
Query: 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD 118
NRA ++L +F AL DC+ ++++S K + K L+++ +S A +++ L VD
Sbjct: 52 NRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVD 111
Query: 119 AQASGSLETVNGFL 132
+ E V L
Sbjct: 112 PSNEEAREGVRNCL 125
>pdb|3OOI|A Chain A, Crystal Structure Of Human Histone-Lysine
N-Methyltransferase Nsd1 Set Domain In Complex With
S-Adenosyl-L-Methionine
Length = 232
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
Query: 316 ASFINHSCSPNARR----VHVGDYIIVHASRDVKAGEEITFAY 354
A F+NH C PN V+ + + A D+KAG E+TF Y
Sbjct: 166 ARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNY 208
>pdb|3F9W|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9W|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20
ADOHCY
pdb|3F9X|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9X|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y334f H4-Lys20me2
Adohcy
pdb|3F9Y|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
pdb|3F9Y|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-y334f / H4-lys20me1
/ Adohcy
Length = 166
Score = 33.9 bits (76), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 315 LASFINHS-CSPNARRVHVGD---YIIVHASRDVKAGEEITFAYFD 356
L INHS C ++H D ++I+ ASRD+ AGEE+ F Y D
Sbjct: 107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGD 152
>pdb|4IJ8|A Chain A, Crystal Structure Of The Complex Of Setd8 With Sam
pdb|4IJ8|B Chain B, Crystal Structure Of The Complex Of Setd8 With Sam
Length = 165
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 29/46 (63%), Gaps = 4/46 (8%)
Query: 315 LASFINHSCSPNAR-RVHVGD---YIIVHASRDVKAGEEITFAYFD 356
L INHS S N + ++H D ++I+ ASRD+ AGEE+ + Y D
Sbjct: 106 LGRLINHSKSGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 151
>pdb|2KCK|A Chain A, Nmr Solution Structure Of The Northeast Structural
Genomics Consortium (Nesg) Target Mrr121a
Length = 112
Score = 33.9 bits (76), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 22/34 (64%)
Query: 79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCF 112
E+A++++ K L KGK L +L RY A+DC+
Sbjct: 30 EKAIQLDPEESKYWLMKGKALYNLERYEEAVDCY 63
>pdb|1ZKK|A Chain A, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|B Chain B, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|C Chain C, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
pdb|1ZKK|D Chain D, Crystal Structure Of Hset8 In Ternary Complex With H4
Peptide (16-24) And Adohcy
Length = 167
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 315 LASFINHS-CSPNARRVHVGD---YIIVHASRDVKAGEEITFAYFD 356
L INHS C ++H D ++I+ ASRD+ AGEE+ + Y D
Sbjct: 108 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 153
>pdb|3F9Z|A Chain A, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|B Chain B, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|C Chain C, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
pdb|3F9Z|D Chain D, Structural Insights Into Lysine Multiple Methylation By
Set Domain Methyltransferases, Set8-Y245f H4-Lys20
ADOHCY
Length = 166
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 315 LASFINHS-CSPNARRVHVGD---YIIVHASRDVKAGEEITFAYFD 356
L INHS C ++H D ++I+ ASRD+ AGEE+ + Y D
Sbjct: 107 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 152
>pdb|2BQZ|A Chain A, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
pdb|2BQZ|E Chain E, Crystal Structure Of A Ternary Complex Of The Human
Histone Methyltransferase Pr-Set7 (Also Known As Set8)
Length = 161
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 27/46 (58%), Gaps = 4/46 (8%)
Query: 315 LASFINHS-CSPNARRVHVGD---YIIVHASRDVKAGEEITFAYFD 356
L INHS C ++H D ++I+ ASRD+ AGEE+ + Y D
Sbjct: 102 LGRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLYDYGD 147
>pdb|1KT0|A Chain A, Structure Of The Large Fkbp-like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 67 RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
+LR++ A+ C++AL ++S++ K L +G+ L +N + A F++ L
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
>pdb|1KT1|A Chain A, Structure Of The Large Fkbp-Like Protein, Fkbp51, Involved
In Steroid Receptor Complexes
Length = 457
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/50 (30%), Positives = 31/50 (62%)
Query: 67 RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116
+LR++ A+ C++AL ++S++ K L +G+ L +N + A F++ L
Sbjct: 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVL 378
>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus
Fumigatus
Length = 164
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 27/133 (20%), Positives = 55/133 (41%), Gaps = 19/133 (14%)
Query: 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETXXXXXXXXXXXXXXXXXXXNRAEA 64
+L+S+ + R+E+ +++ +YTQ + + + NRA A
Sbjct: 13 KLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI------------------YLSNRAAA 54
Query: 65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS 124
S + A D E A ++ + KA G + Y A + + E ++A+ +G
Sbjct: 55 YSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAY-EKGIEAEGNGG 113
Query: 125 LETVNGFLEKSKK 137
+ + LE +K+
Sbjct: 114 SDAMKRGLETTKR 126
>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of
Human Smooth Muscle Cell Associated Protein-1, Isoform 2
Length = 148
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 30/133 (22%), Positives = 54/133 (40%), Gaps = 22/133 (16%)
Query: 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETXXXXXXXXXXXXXXXXXXXNRA 62
++QLR + EL ++ ++ YTQ + L + + NRA
Sbjct: 28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHR---------------NRA 72
Query: 63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQAS 122
+L D+D A + +A++ + KAL + + L L R A ++D Q
Sbjct: 73 ACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQALEKLGRLDQA-------VLDLQRC 125
Query: 123 GSLETVNGFLEKS 135
SLE N +++
Sbjct: 126 VSLEPKNKVFQEA 138
>pdb|2IGQ|A Chain A, Human Euchromatic Histone Methyltransferase 1
pdb|2IGQ|B Chain B, Human Euchromatic Histone Methyltransferase 1
pdb|2RFI|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|2RFI|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Dimethylated H3k9 Peptide
pdb|3MO0|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO0|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E11
pdb|3MO2|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO2|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E67
pdb|3MO5|A Chain A, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|B Chain B, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|C Chain C, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3MO5|D Chain D, Human G9a-Like (Glp, Also Known As Ehmt1) In Complex With
Inhibitor E72
pdb|3SWC|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SWC|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me2 Peptide
pdb|3SW9|A Chain A, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
pdb|3SW9|B Chain B, Glp (G9a-Like Protein) Set Domain In Complex With
Dnmt3ak44me0 Peptide
Length = 285
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 315 LASFINHSCSPNARRVHV--------GDYIIVHASRDVKAGEEITFAY 354
++ FINH C PN V V I ++R ++AGE++ F Y
Sbjct: 214 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 261
>pdb|3HNA|A Chain A, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
pdb|3HNA|B Chain B, Crystal Structure Of Catalytic Domain Of Human Euchromatic
Histone Methyltransferase 1 In Complex With Sah And
Mono- Methylated H3k9 Peptide
Length = 287
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 315 LASFINHSCSPNARRVHV--------GDYIIVHASRDVKAGEEITFAY 354
++ FINH C PN V V I ++R ++AGE++ F Y
Sbjct: 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 263
>pdb|3FPD|A Chain A, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
pdb|3FPD|B Chain B, G9a-Like Protein Lysine Methyltransferase Inhibition By
Bix- 01294
Length = 261
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
Query: 315 LASFINHSCSPNARRVHV--------GDYIIVHASRDVKAGEEITFAY 354
++ FINH C PN V V I ++R ++AGE++ F Y
Sbjct: 190 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDY 237
>pdb|3VTX|A Chain A, Crystal Structure Of Mama Protein
pdb|3VTX|B Chain B, Crystal Structure Of Mama Protein
pdb|3VTY|A Chain A, Crystal Structure Of Mama
pdb|3VTY|B Chain B, Crystal Structure Of Mama
pdb|3VTY|C Chain C, Crystal Structure Of Mama
pdb|3VTY|D Chain D, Crystal Structure Of Mama
Length = 184
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 14/48 (29%), Positives = 28/48 (58%)
Query: 70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117
DFD A+R ++ LK + ++ + LL GK + + + A++ K+ +V
Sbjct: 20 DFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVV 67
>pdb|2IE3|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Tumor- Inducing Toxins
pdb|2IE4|A Chain A, Structure Of The Protein Phosphatase 2a Core Enzyme Bound
To Okadaic Acid
pdb|2NPP|A Chain A, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|2NPP|D Chain D, Structure Of The Protein Phosphatase 2a Holoenzyme
pdb|3K7V|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-1
pdb|3K7W|A Chain A, Protein Phosphatase 2a Core Complex Bound To
Dinophysistoxin-2
Length = 589
Score = 28.5 bits (62), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 34/128 (26%), Positives = 52/128 (40%), Gaps = 33/128 (25%)
Query: 71 FDNALRDCEQALKIESSHFKALLCKGKILLSLN-----RYSMALDCFKETLVDA--QASG 123
F N ++DCE ++ +SH C+ LS + S L C KE + DA
Sbjct: 287 FQNLMKDCEAEVRAAASHKVKEFCEN---LSADCRENVIMSQILPCIKELVSDANQHVKS 343
Query: 124 SLETV----NGFLEKSKKLEYQSRTGALDLSDWILNGLRGKCPE-----------LAEYI 168
+L +V + L K +E+ L L L+ +CPE + E I
Sbjct: 344 ALASVIMGLSPILGKDNTIEH--------LLPLFLAQLKDECPEVRLNIISNLDCVNEVI 395
Query: 169 GAVQISKS 176
G Q+S+S
Sbjct: 396 GIRQLSQS 403
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.382
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,296,836
Number of Sequences: 62578
Number of extensions: 438886
Number of successful extensions: 994
Number of sequences better than 100.0: 49
Number of HSP's better than 100.0 without gapping: 26
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 942
Number of HSP's gapped (non-prelim): 52
length of query: 518
length of database: 14,973,337
effective HSP length: 103
effective length of query: 415
effective length of database: 8,527,803
effective search space: 3539038245
effective search space used: 3539038245
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)