Query 035535
Match_columns 518
No_of_seqs 584 out of 3919
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 03:48:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035535.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035535hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0553 TPR repeat-containing 99.8 5.7E-20 1.2E-24 175.5 12.0 104 2-123 80-184 (304)
2 KOG0543 FKBP-type peptidyl-pro 99.7 2.3E-16 5.1E-21 156.8 15.5 133 2-137 207-340 (397)
3 KOG4234 TPR repeat-containing 99.7 8E-16 1.7E-20 138.4 12.4 108 2-122 94-202 (271)
4 PF00856 SET: SET domain; Int 99.6 6.6E-16 1.4E-20 139.3 8.8 49 307-355 110-162 (162)
5 KOG0548 Molecular co-chaperone 99.6 3.4E-15 7.4E-20 152.2 13.0 115 2-138 357-472 (539)
6 KOG0547 Translocase of outer m 99.6 2.5E-14 5.5E-19 143.9 13.2 117 2-136 114-232 (606)
7 KOG0548 Molecular co-chaperone 99.5 2.6E-14 5.7E-19 145.7 9.5 104 3-124 2-106 (539)
8 smart00317 SET SET (Su(var)3-9 99.5 4.8E-14 1E-18 120.4 9.2 44 311-354 69-116 (116)
9 KOG0550 Molecular chaperone (D 99.5 9.8E-14 2.1E-18 137.3 10.8 115 2-130 248-362 (486)
10 PRK15359 type III secretion sy 99.5 4E-13 8.6E-18 120.0 13.8 108 4-129 25-133 (144)
11 PLN03088 SGT1, suppressor of 99.5 2.8E-13 6E-18 139.1 13.7 114 3-138 2-116 (356)
12 KOG4648 Uncharacterized conser 99.5 1.3E-13 2.8E-18 133.3 9.3 115 3-139 97-212 (536)
13 KOG0545 Aryl-hydrocarbon recep 99.5 1.2E-12 2.6E-17 121.5 14.5 130 3-135 178-308 (329)
14 KOG0551 Hsp90 co-chaperone CNS 99.4 7.1E-13 1.5E-17 128.0 10.4 101 2-116 80-180 (390)
15 PRK15363 pathogenicity island 99.4 6.5E-12 1.4E-16 111.2 13.0 98 2-117 34-131 (157)
16 KOG2084 Predicted histone tail 99.4 2.5E-12 5.5E-17 137.6 12.5 80 307-386 197-278 (482)
17 PRK10370 formate-dependent nit 99.4 1.3E-11 2.8E-16 116.1 14.2 119 2-139 72-194 (198)
18 KOG4642 Chaperone-dependent E3 99.3 2.7E-12 5.9E-17 118.8 8.7 119 2-138 9-129 (284)
19 TIGR02552 LcrH_SycD type III s 99.3 5.2E-11 1.1E-15 104.6 14.2 104 2-123 16-120 (135)
20 KOG0376 Serine-threonine phosp 99.3 5.1E-12 1.1E-16 128.2 6.6 117 2-140 3-120 (476)
21 PRK11189 lipoprotein NlpI; Pro 99.3 4.6E-11 1E-15 119.8 12.6 102 3-122 64-166 (296)
22 TIGR00990 3a0801s09 mitochondr 99.2 8.2E-11 1.8E-15 130.0 13.6 97 3-118 127-223 (615)
23 KOG4626 O-linked N-acetylgluco 99.2 7.6E-11 1.6E-15 121.9 11.0 112 3-132 388-500 (966)
24 PF13414 TPR_11: TPR repeat; P 99.2 5.3E-11 1.1E-15 91.9 7.6 68 1-86 1-69 (69)
25 KOG4626 O-linked N-acetylgluco 99.1 1.5E-10 3.2E-15 119.8 8.2 119 3-139 252-371 (966)
26 KOG4442 Clathrin coat binding 99.1 7.7E-11 1.7E-15 123.5 5.7 61 315-382 193-257 (729)
27 TIGR02795 tol_pal_ybgF tol-pal 99.1 1.7E-09 3.6E-14 92.3 12.0 105 3-122 2-110 (119)
28 TIGR00990 3a0801s09 mitochondr 99.1 1.5E-09 3.4E-14 119.9 14.3 112 3-132 331-443 (615)
29 PRK15331 chaperone protein Sic 99.1 1.1E-09 2.5E-14 97.4 10.6 116 2-135 36-151 (165)
30 KOG0624 dsRNA-activated protei 99.0 9.1E-10 2E-14 107.0 10.1 104 2-123 37-141 (504)
31 PF12895 Apc3: Anaphase-promot 99.0 6.9E-10 1.5E-14 89.3 7.7 83 16-115 2-84 (84)
32 COG3063 PilF Tfp pilus assembl 99.0 2.4E-09 5.3E-14 99.3 12.2 104 3-124 35-138 (250)
33 cd00189 TPR Tetratricopeptide 99.0 3.3E-09 7.2E-14 84.6 10.8 97 5-119 2-99 (100)
34 PF13414 TPR_11: TPR repeat; P 99.0 1.4E-09 3.1E-14 83.8 7.7 63 57-119 5-69 (69)
35 PRK12370 invasion protein regu 99.0 3.8E-09 8.2E-14 115.2 13.8 90 15-122 316-406 (553)
36 KOG1126 DNA-binding cell divis 99.0 7.2E-10 1.6E-14 116.2 7.6 120 2-139 420-540 (638)
37 PRK15179 Vi polysaccharide bio 99.0 3.5E-09 7.6E-14 116.7 13.3 120 2-139 85-205 (694)
38 PRK09782 bacteriophage N4 rece 99.0 8.7E-09 1.9E-13 117.8 15.3 112 3-132 609-721 (987)
39 PRK15359 type III secretion sy 98.9 6.9E-09 1.5E-13 92.6 11.3 98 23-141 13-111 (144)
40 PRK02603 photosystem I assembl 98.9 2.1E-08 4.5E-13 92.3 13.7 88 3-105 35-122 (172)
41 PRK11189 lipoprotein NlpI; Pro 98.9 1.6E-08 3.6E-13 101.4 14.1 96 2-116 97-192 (296)
42 PRK12370 invasion protein regu 98.9 1.5E-08 3.3E-13 110.5 14.4 105 19-141 354-460 (553)
43 CHL00033 ycf3 photosystem I as 98.9 2.2E-08 4.8E-13 91.7 13.3 99 3-116 35-140 (168)
44 KOG1155 Anaphase-promoting com 98.9 2.2E-08 4.7E-13 101.1 13.5 94 5-116 366-459 (559)
45 TIGR02521 type_IV_pilW type IV 98.9 4E-08 8.7E-13 93.0 14.1 99 3-119 31-129 (234)
46 KOG1155 Anaphase-promoting com 98.9 1.6E-08 3.5E-13 102.1 11.5 115 9-141 336-451 (559)
47 PF13432 TPR_16: Tetratricopep 98.9 8.5E-09 1.8E-13 78.5 7.3 64 59-122 1-65 (65)
48 TIGR03302 OM_YfiO outer membra 98.8 4.5E-08 9.7E-13 94.6 13.7 108 2-124 32-151 (235)
49 KOG4555 TPR repeat-containing 98.8 3.1E-08 6.6E-13 83.9 10.7 97 3-117 43-143 (175)
50 TIGR02521 type_IV_pilW type IV 98.8 5.9E-08 1.3E-12 91.9 13.9 102 3-122 65-169 (234)
51 KOG1308 Hsp70-interacting prot 98.8 1.5E-09 3.3E-14 105.8 2.2 99 2-118 113-211 (377)
52 PRK10370 formate-dependent nit 98.8 4.8E-08 1E-12 91.9 12.1 106 16-139 52-161 (198)
53 PRK09782 bacteriophage N4 rece 98.8 4.6E-08 9.9E-13 112.0 14.0 104 17-139 590-694 (987)
54 PRK15174 Vi polysaccharide exp 98.8 4.8E-08 1E-12 108.5 13.7 60 57-116 286-345 (656)
55 KOG0547 Translocase of outer m 98.8 5E-08 1.1E-12 99.1 12.4 78 57-134 396-474 (606)
56 KOG1126 DNA-binding cell divis 98.8 2.2E-08 4.7E-13 105.3 9.9 100 4-121 490-590 (638)
57 KOG1080 Histone H3 (Lys4) meth 98.8 7.7E-09 1.7E-13 115.7 6.8 60 315-382 939-1002(1005)
58 COG4235 Cytochrome c biogenesi 98.8 9E-08 1.9E-12 92.9 13.3 115 1-133 154-272 (287)
59 COG5010 TadD Flp pilus assembl 98.8 7.9E-08 1.7E-12 91.1 12.4 120 4-141 101-221 (257)
60 PF13429 TPR_15: Tetratricopep 98.8 1.9E-08 4.2E-13 100.0 8.7 120 3-140 146-266 (280)
61 PF13432 TPR_16: Tetratricopep 98.8 1.8E-08 4E-13 76.6 6.5 64 8-89 2-65 (65)
62 COG3063 PilF Tfp pilus assembl 98.7 1E-07 2.2E-12 88.7 11.8 109 3-129 69-180 (250)
63 PRK15179 Vi polysaccharide bio 98.7 1E-07 2.3E-12 105.2 14.2 98 1-116 118-215 (694)
64 KOG1125 TPR repeat-containing 98.7 2.6E-08 5.7E-13 103.2 8.6 97 5-119 432-529 (579)
65 PRK15174 Vi polysaccharide exp 98.7 7.6E-08 1.6E-12 107.0 12.8 114 8-139 217-335 (656)
66 PLN02789 farnesyltranstransfer 98.7 1.5E-07 3.3E-12 94.9 13.5 105 3-125 71-179 (320)
67 TIGR02552 LcrH_SycD type III s 98.7 9.9E-08 2.1E-12 83.6 9.5 97 24-138 4-101 (135)
68 PF13512 TPR_18: Tetratricopep 98.7 2.7E-07 5.8E-12 80.6 11.9 104 3-121 10-132 (142)
69 PRK10803 tol-pal system protei 98.7 3E-07 6.5E-12 90.1 13.1 103 4-121 143-250 (263)
70 KOG2589 Histone tail methylase 98.7 1.7E-08 3.7E-13 98.4 4.2 64 311-383 191-256 (453)
71 KOG1173 Anaphase-promoting com 98.6 2.2E-07 4.7E-12 96.2 11.9 114 6-130 417-531 (611)
72 KOG4162 Predicted calmodulin-b 98.6 2.5E-07 5.3E-12 98.8 11.7 102 3-122 684-788 (799)
73 PRK10049 pgaA outer membrane p 98.6 3.7E-07 8E-12 103.4 13.4 111 3-132 49-160 (765)
74 PF14559 TPR_19: Tetratricopep 98.6 1.4E-07 3.1E-12 72.2 6.9 67 13-97 1-67 (68)
75 PF13371 TPR_9: Tetratricopept 98.6 2.4E-07 5.1E-12 72.1 8.2 65 11-93 3-67 (73)
76 TIGR03302 OM_YfiO outer membra 98.6 8.1E-07 1.8E-11 85.8 13.6 105 4-123 71-201 (235)
77 TIGR02917 PEP_TPR_lipo putativ 98.6 5E-07 1.1E-11 103.1 13.9 105 3-125 125-230 (899)
78 KOG1310 WD40 repeat protein [G 98.6 1.4E-07 3.1E-12 96.5 7.9 102 2-121 373-478 (758)
79 TIGR02917 PEP_TPR_lipo putativ 98.6 5.5E-07 1.2E-11 102.7 13.8 108 6-132 773-881 (899)
80 PF13525 YfiO: Outer membrane 98.5 2.3E-06 5.1E-11 80.9 15.4 121 2-138 4-139 (203)
81 PRK10866 outer membrane biogen 98.5 1.6E-06 3.4E-11 84.3 14.5 121 2-138 31-173 (243)
82 PLN02789 farnesyltranstransfer 98.5 1E-06 2.2E-11 89.0 13.1 114 2-133 105-228 (320)
83 KOG0550 Molecular chaperone (D 98.5 7.8E-08 1.7E-12 96.0 5.0 94 2-113 48-141 (486)
84 PRK11788 tetratricopeptide rep 98.5 1.5E-06 3.2E-11 90.4 14.7 63 57-119 182-245 (389)
85 PRK11788 tetratricopeptide rep 98.5 1.3E-06 2.9E-11 90.7 13.7 96 7-120 184-281 (389)
86 PRK11447 cellulose synthase su 98.5 1.1E-06 2.3E-11 104.1 14.2 102 4-123 604-706 (1157)
87 PRK10049 pgaA outer membrane p 98.5 1.1E-06 2.4E-11 99.6 13.6 102 4-123 360-462 (765)
88 KOG2076 RNA polymerase III tra 98.5 2E-06 4.4E-11 93.4 14.7 99 3-119 139-272 (895)
89 PRK11447 cellulose synthase su 98.5 8.7E-07 1.9E-11 104.9 13.0 111 8-136 274-399 (1157)
90 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.3E-06 2.9E-11 89.6 12.0 60 57-116 77-139 (453)
91 PF13371 TPR_9: Tetratricopept 98.5 4.8E-07 1E-11 70.3 6.7 61 62-122 2-63 (73)
92 PLN03098 LPA1 LOW PSII ACCUMUL 98.4 4.9E-07 1.1E-11 92.8 8.3 58 83-140 69-130 (453)
93 PF09976 TPR_21: Tetratricopep 98.4 2.3E-06 5E-11 76.3 11.6 94 6-115 51-144 (145)
94 PF12688 TPR_5: Tetratrico pep 98.4 3.4E-06 7.4E-11 72.3 12.1 98 4-116 2-102 (120)
95 COG1729 Uncharacterized protei 98.4 1.9E-06 4.1E-11 82.8 11.3 104 4-122 142-249 (262)
96 KOG0624 dsRNA-activated protei 98.4 3.5E-06 7.5E-11 82.5 13.1 101 5-123 157-258 (504)
97 COG4785 NlpI Lipoprotein NlpI, 98.4 9.1E-07 2E-11 81.5 8.4 103 2-122 64-167 (297)
98 KOG2003 TPR repeat-containing 98.4 4.7E-07 1E-11 91.1 6.1 113 3-133 490-603 (840)
99 COG4783 Putative Zn-dependent 98.4 5E-06 1.1E-10 85.2 13.4 117 4-138 307-424 (484)
100 PLN03088 SGT1, suppressor of 98.4 1.7E-06 3.8E-11 88.9 10.3 83 2-102 35-117 (356)
101 PF14559 TPR_19: Tetratricopep 98.3 9E-07 1.9E-11 67.7 5.1 57 65-121 1-58 (68)
102 PF06552 TOM20_plant: Plant sp 98.3 3.1E-06 6.7E-11 76.3 8.7 86 19-122 7-114 (186)
103 PF13424 TPR_12: Tetratricopep 98.3 2.1E-06 4.6E-11 67.7 6.8 62 55-116 5-73 (78)
104 KOG1125 TPR repeat-containing 98.3 5.6E-06 1.2E-10 86.2 11.1 130 1-130 317-506 (579)
105 PRK15363 pathogenicity island 98.3 6.2E-06 1.3E-10 73.3 9.7 85 57-141 37-122 (157)
106 PF13424 TPR_12: Tetratricopep 98.3 5.7E-06 1.2E-10 65.2 8.5 72 2-84 4-75 (78)
107 COG4783 Putative Zn-dependent 98.2 1.6E-05 3.5E-10 81.6 13.6 94 6-117 343-436 (484)
108 KOG0553 TPR repeat-containing 98.2 4.5E-06 9.7E-11 80.8 9.1 82 5-104 117-198 (304)
109 PF12968 DUF3856: Domain of Un 98.2 4.2E-05 9E-10 63.9 13.5 103 8-116 14-127 (144)
110 PF13429 TPR_15: Tetratricopep 98.2 7.5E-06 1.6E-10 81.3 11.2 118 6-139 113-231 (280)
111 KOG0546 HSP90 co-chaperone CPR 98.2 7.5E-07 1.6E-11 87.8 3.8 122 3-124 222-345 (372)
112 cd00189 TPR Tetratricopeptide 98.2 1.3E-05 2.9E-10 63.3 10.3 76 57-132 2-78 (100)
113 PRK14574 hmsH outer membrane p 98.2 1.1E-05 2.4E-10 91.0 13.0 118 2-119 33-167 (822)
114 KOG3060 Uncharacterized conser 98.2 1.2E-05 2.7E-10 75.9 10.6 110 6-133 89-199 (289)
115 CHL00033 ycf3 photosystem I as 98.2 7.1E-06 1.5E-10 75.0 8.9 112 9-136 5-120 (168)
116 cd05804 StaR_like StaR_like; a 98.2 1.9E-05 4.1E-10 81.0 12.3 94 5-116 116-213 (355)
117 COG5010 TadD Flp pilus assembl 98.2 2.2E-05 4.8E-10 74.7 11.6 108 8-133 71-179 (257)
118 KOG1128 Uncharacterized conser 98.1 6.8E-06 1.5E-10 87.6 8.8 114 7-138 489-603 (777)
119 KOG0543 FKBP-type peptidyl-pro 98.1 2.4E-05 5.2E-10 78.9 10.9 95 4-116 258-353 (397)
120 KOG1129 TPR repeat-containing 98.1 3.9E-06 8.6E-11 81.7 5.2 155 3-166 290-464 (478)
121 PRK10153 DNA-binding transcrip 98.0 8.8E-05 1.9E-09 79.8 15.2 118 5-123 341-488 (517)
122 COG2940 Proteins containing SE 98.0 2.5E-06 5.5E-11 91.2 3.1 69 315-383 405-478 (480)
123 COG2956 Predicted N-acetylgluc 98.0 8.7E-05 1.9E-09 72.5 13.2 102 5-119 143-245 (389)
124 TIGR02795 tol_pal_ybgF tol-pal 98.0 4.6E-05 1E-09 64.5 10.0 66 57-122 4-73 (119)
125 PRK02603 photosystem I assembl 98.0 4.4E-05 9.6E-10 70.1 10.6 78 57-134 37-118 (172)
126 KOG1085 Predicted methyltransf 98.0 1.3E-05 2.8E-10 76.1 6.9 43 316-358 334-380 (392)
127 KOG1082 Histone H3 (Lys9) meth 98.0 1.5E-05 3.3E-10 82.1 7.9 43 316-358 273-323 (364)
128 PF03704 BTAD: Bacterial trans 98.0 0.00018 3.8E-09 64.1 13.9 113 4-116 7-123 (146)
129 PRK14574 hmsH outer membrane p 98.0 4.9E-05 1.1E-09 85.8 12.3 108 4-130 103-211 (822)
130 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 4.5E-05 9.7E-10 78.8 10.7 91 8-116 205-295 (395)
131 KOG1173 Anaphase-promoting com 98.0 4E-05 8.6E-10 79.8 9.9 114 9-140 386-507 (611)
132 KOG2002 TPR-containing nuclear 98.0 5.4E-05 1.2E-09 83.2 11.4 118 2-134 269-388 (1018)
133 KOG2076 RNA polymerase III tra 98.0 0.00012 2.6E-09 80.0 13.9 113 4-134 208-325 (895)
134 KOG1840 Kinesin light chain [C 97.9 0.00013 2.8E-09 77.5 13.9 104 3-116 283-394 (508)
135 KOG2002 TPR-containing nuclear 97.9 4.7E-05 1E-09 83.7 10.7 124 15-138 624-766 (1018)
136 PF09976 TPR_21: Tetratricopep 97.9 0.00016 3.5E-09 64.3 12.4 98 3-115 11-111 (145)
137 KOG1128 Uncharacterized conser 97.9 3.8E-05 8.2E-10 82.1 9.5 103 3-123 519-621 (777)
138 KOG1840 Kinesin light chain [C 97.9 7.3E-05 1.6E-09 79.3 11.1 103 4-116 200-310 (508)
139 KOG4234 TPR repeat-containing 97.9 5.2E-05 1.1E-09 69.3 8.4 68 5-90 136-203 (271)
140 cd05804 StaR_like StaR_like; a 97.9 0.00013 2.7E-09 74.9 12.3 118 3-120 43-180 (355)
141 COG4700 Uncharacterized protei 97.9 0.00025 5.3E-09 64.3 12.2 118 3-139 89-210 (251)
142 PF12569 NARP1: NMDA receptor- 97.8 0.00022 4.8E-09 76.4 13.6 85 55-139 194-279 (517)
143 TIGR00540 hemY_coli hemY prote 97.8 0.00016 3.5E-09 76.0 12.5 121 3-140 263-388 (409)
144 PF14938 SNAP: Soluble NSF att 97.8 0.00048 1E-08 68.6 15.1 120 3-134 114-244 (282)
145 PF13431 TPR_17: Tetratricopep 97.8 1.8E-05 3.8E-10 51.8 3.1 33 78-110 2-34 (34)
146 PF15015 NYD-SP12_N: Spermatog 97.8 0.00026 5.6E-09 71.3 12.4 128 6-133 179-307 (569)
147 KOG1156 N-terminal acetyltrans 97.8 0.00013 2.8E-09 77.2 10.8 116 5-138 9-125 (700)
148 TIGR00540 hemY_coli hemY prote 97.8 0.00035 7.6E-09 73.4 14.0 117 3-137 84-202 (409)
149 PRK11906 transcriptional regul 97.8 0.00023 5E-09 73.5 12.1 102 5-124 257-374 (458)
150 PRK14720 transcript cleavage f 97.8 0.00025 5.3E-09 79.8 13.1 114 2-116 30-176 (906)
151 COG4105 ComL DNA uptake lipopr 97.8 0.00069 1.5E-08 64.8 13.9 104 2-120 33-148 (254)
152 PRK11906 transcriptional regul 97.7 0.00015 3.2E-09 74.9 10.0 86 16-119 317-403 (458)
153 PF00515 TPR_1: Tetratricopept 97.7 5.1E-05 1.1E-09 49.4 4.3 32 57-88 3-34 (34)
154 KOG1174 Anaphase-promoting com 97.7 0.00038 8.3E-09 70.1 12.2 99 2-118 333-467 (564)
155 PF12895 Apc3: Anaphase-promot 97.7 0.0001 2.2E-09 58.9 6.9 60 3-81 25-84 (84)
156 KOG4162 Predicted calmodulin-b 97.7 0.00027 5.9E-09 76.1 11.8 119 5-141 652-773 (799)
157 KOG1083 Putative transcription 97.7 3.4E-05 7.3E-10 84.9 5.0 41 316-356 1251-1295(1306)
158 PRK10747 putative protoheme IX 97.6 0.00075 1.6E-08 70.7 13.8 115 3-135 84-200 (398)
159 PF13428 TPR_14: Tetratricopep 97.6 0.00011 2.3E-09 51.2 4.9 41 57-97 3-43 (44)
160 KOG1129 TPR repeat-containing 97.6 0.00017 3.7E-09 70.5 7.9 104 2-123 255-359 (478)
161 COG2956 Predicted N-acetylgluc 97.6 0.0012 2.6E-08 64.7 13.1 98 3-118 180-278 (389)
162 PF12688 TPR_5: Tetratrico pep 97.6 0.00064 1.4E-08 58.3 9.8 66 57-122 3-72 (120)
163 KOG1156 N-terminal acetyltrans 97.5 0.0011 2.3E-08 70.5 12.6 93 6-116 78-170 (700)
164 PF14938 SNAP: Soluble NSF att 97.5 0.0015 3.2E-08 65.1 13.1 97 9-117 80-183 (282)
165 KOG1127 TPR repeat-containing 97.5 0.00024 5.1E-09 78.4 7.7 95 4-116 563-657 (1238)
166 PRK10747 putative protoheme IX 97.5 0.001 2.2E-08 69.6 12.1 114 4-139 264-378 (398)
167 KOG3060 Uncharacterized conser 97.5 0.0035 7.5E-08 59.7 14.0 95 7-119 124-222 (289)
168 PF00515 TPR_1: Tetratricopept 97.5 0.00021 4.6E-09 46.4 4.3 32 89-120 1-33 (34)
169 PF13431 TPR_17: Tetratricopep 97.4 9.4E-05 2E-09 48.3 2.3 34 25-76 1-34 (34)
170 PRK10803 tol-pal system protei 97.4 0.001 2.2E-08 65.3 10.4 72 57-128 144-220 (263)
171 PRK14720 transcript cleavage f 97.4 0.00072 1.5E-08 76.1 10.1 52 55-121 150-202 (906)
172 PF07719 TPR_2: Tetratricopept 97.4 0.00035 7.6E-09 45.2 4.5 32 57-88 3-34 (34)
173 COG4235 Cytochrome c biogenesi 97.4 0.0021 4.6E-08 62.8 11.6 90 17-124 136-229 (287)
174 PF09295 ChAPs: ChAPs (Chs5p-A 97.3 0.0021 4.6E-08 66.5 12.2 106 15-141 181-287 (395)
175 KOG1174 Anaphase-promoting com 97.3 0.0021 4.5E-08 65.0 11.2 103 3-123 300-403 (564)
176 PF07719 TPR_2: Tetratricopept 97.3 0.00045 9.8E-09 44.6 4.5 33 89-121 1-34 (34)
177 KOG1130 Predicted G-alpha GTPa 97.3 0.00035 7.5E-09 70.3 5.2 99 6-116 198-302 (639)
178 KOG1127 TPR repeat-containing 97.2 0.0038 8.3E-08 69.2 13.2 100 5-122 4-108 (1238)
179 PRK10866 outer membrane biogen 97.2 0.0072 1.6E-07 58.7 14.0 114 4-132 70-219 (243)
180 KOG2003 TPR repeat-containing 97.2 0.0025 5.5E-08 64.9 10.6 95 4-116 525-619 (840)
181 PF13525 YfiO: Outer membrane 97.2 0.0068 1.5E-07 57.2 13.2 106 3-123 42-176 (203)
182 PRK10941 hypothetical protein; 97.1 0.0045 9.8E-08 60.8 10.9 81 53-134 179-260 (269)
183 PF12569 NARP1: NMDA receptor- 97.1 0.01 2.2E-07 63.8 14.3 94 7-118 198-291 (517)
184 PF06552 TOM20_plant: Plant sp 97.0 0.0046 9.9E-08 56.1 9.4 71 2-90 24-115 (186)
185 PRK15331 chaperone protein Sic 97.0 0.0062 1.3E-07 54.7 10.1 69 57-125 39-108 (165)
186 PF04733 Coatomer_E: Coatomer 97.0 0.0038 8.2E-08 62.3 9.7 97 8-124 136-237 (290)
187 KOG2376 Signal recognition par 97.0 0.0082 1.8E-07 63.3 12.1 113 3-118 12-139 (652)
188 PF04733 Coatomer_E: Coatomer 97.0 0.007 1.5E-07 60.4 11.2 87 17-121 181-269 (290)
189 KOG4340 Uncharacterized conser 97.0 0.0024 5.1E-08 62.0 7.3 92 3-112 144-264 (459)
190 KOG1338 Uncharacterized conser 96.9 0.0022 4.8E-08 64.1 7.2 81 277-357 177-261 (466)
191 KOG4151 Myosin assembly protei 96.9 0.0024 5.2E-08 69.5 7.9 110 2-125 52-164 (748)
192 KOG1130 Predicted G-alpha GTPa 96.9 0.0022 4.7E-08 64.8 6.8 99 4-116 18-122 (639)
193 KOG0495 HAT repeat protein [RN 96.9 0.0088 1.9E-07 63.8 11.5 129 6-134 587-731 (913)
194 PF13428 TPR_14: Tetratricopep 96.9 0.0017 3.6E-08 45.0 4.2 35 4-38 2-36 (44)
195 COG4785 NlpI Lipoprotein NlpI, 96.8 0.0046 9.9E-08 57.6 7.9 67 3-87 99-165 (297)
196 PF13181 TPR_8: Tetratricopept 96.8 0.0019 4.1E-08 41.8 3.7 31 57-87 3-33 (34)
197 KOG4648 Uncharacterized conser 96.8 0.0055 1.2E-07 60.6 8.2 67 6-90 134-200 (536)
198 PRK10153 DNA-binding transcrip 96.8 0.0047 1E-07 66.6 8.7 71 5-94 422-492 (517)
199 KOG1141 Predicted histone meth 96.7 0.00062 1.3E-08 73.3 1.7 58 317-381 1191-1258(1262)
200 PF14853 Fis1_TPR_C: Fis1 C-te 96.7 0.0049 1.1E-07 44.5 5.8 39 57-95 3-41 (53)
201 COG1729 Uncharacterized protei 96.7 0.011 2.5E-07 57.1 10.1 75 58-132 144-222 (262)
202 PF13512 TPR_18: Tetratricopep 96.6 0.014 2.9E-07 51.3 9.0 68 57-124 12-83 (142)
203 KOG0495 HAT repeat protein [RN 96.5 0.026 5.7E-07 60.3 12.0 102 5-124 653-755 (913)
204 KOG4814 Uncharacterized conser 96.5 0.033 7.2E-07 59.3 12.6 100 5-116 356-455 (872)
205 KOG4555 TPR repeat-containing 96.5 0.026 5.7E-07 48.4 9.7 62 57-118 45-106 (175)
206 KOG3785 Uncharacterized conser 96.5 0.0067 1.4E-07 60.3 7.0 89 11-116 30-118 (557)
207 KOG2053 Mitochondrial inherita 96.5 0.025 5.5E-07 62.4 11.8 92 11-120 17-109 (932)
208 KOG2376 Signal recognition par 96.4 0.025 5.4E-07 59.8 10.7 56 57-113 48-103 (652)
209 PF13181 TPR_8: Tetratricopept 96.4 0.0065 1.4E-07 39.2 4.3 30 90-119 2-32 (34)
210 COG3118 Thioredoxin domain-con 96.3 0.081 1.8E-06 51.8 13.2 94 5-116 136-263 (304)
211 COG0457 NrfG FOG: TPR repeat [ 96.2 0.12 2.7E-06 46.8 13.7 60 57-116 97-157 (291)
212 KOG4507 Uncharacterized conser 96.2 0.016 3.4E-07 61.1 8.0 94 15-125 619-713 (886)
213 COG2976 Uncharacterized protei 96.2 0.11 2.3E-06 48.0 12.3 96 6-118 92-189 (207)
214 KOG3081 Vesicle coat complex C 96.1 0.081 1.8E-06 51.0 11.7 70 58-127 172-246 (299)
215 PF13176 TPR_7: Tetratricopept 96.1 0.011 2.5E-07 38.9 4.2 31 5-35 1-31 (36)
216 COG0457 NrfG FOG: TPR repeat [ 96.1 0.097 2.1E-06 47.6 12.2 93 12-120 139-234 (291)
217 KOG1079 Transcriptional repres 96.0 0.0054 1.2E-07 65.3 3.6 43 315-357 665-711 (739)
218 KOG2796 Uncharacterized conser 96.0 0.056 1.2E-06 51.9 9.9 67 56-122 253-320 (366)
219 KOG4340 Uncharacterized conser 95.9 0.087 1.9E-06 51.5 11.1 87 12-116 19-105 (459)
220 KOG1941 Acetylcholine receptor 95.9 0.051 1.1E-06 54.4 9.5 99 6-116 125-233 (518)
221 PF10300 DUF3808: Protein of u 95.8 0.06 1.3E-06 57.5 10.8 96 6-116 270-374 (468)
222 PF13174 TPR_6: Tetratricopept 95.8 0.015 3.3E-07 36.9 3.8 29 91-119 2-31 (33)
223 KOG1337 N-methyltransferase [G 95.7 0.005 1.1E-07 65.9 2.1 62 308-374 229-291 (472)
224 smart00028 TPR Tetratricopepti 95.7 0.019 4.1E-07 35.2 4.0 31 57-87 3-33 (34)
225 PF04781 DUF627: Protein of un 95.6 0.1 2.2E-06 43.6 9.0 93 9-116 2-105 (111)
226 PF13176 TPR_7: Tetratricopept 95.6 0.018 3.8E-07 38.0 3.5 25 92-116 2-26 (36)
227 PF09986 DUF2225: Uncharacteri 95.5 0.26 5.7E-06 46.8 12.7 98 15-123 89-199 (214)
228 PRK04841 transcriptional regul 95.5 0.15 3.2E-06 59.3 13.1 99 6-116 494-600 (903)
229 KOG2471 TPR repeat-containing 95.5 0.026 5.6E-07 58.4 5.9 113 3-125 240-372 (696)
230 KOG0545 Aryl-hydrocarbon recep 95.4 0.11 2.3E-06 49.5 9.3 71 6-94 233-303 (329)
231 COG3071 HemY Uncharacterized e 95.4 0.12 2.5E-06 52.5 10.1 112 7-140 267-379 (400)
232 KOG3824 Huntingtin interacting 95.3 0.056 1.2E-06 52.9 7.3 69 56-124 117-186 (472)
233 PRK10941 hypothetical protein; 95.3 0.1 2.2E-06 51.3 9.2 76 5-98 183-258 (269)
234 KOG1586 Protein required for f 95.3 0.64 1.4E-05 44.1 13.8 106 8-125 118-232 (288)
235 PF14853 Fis1_TPR_C: Fis1 C-te 95.2 0.055 1.2E-06 39.1 5.3 35 90-124 2-37 (53)
236 PF13174 TPR_6: Tetratricopept 95.2 0.027 5.8E-07 35.7 3.4 32 57-88 2-33 (33)
237 PF03704 BTAD: Bacterial trans 95.1 0.11 2.3E-06 46.0 8.3 63 3-83 62-124 (146)
238 KOG0376 Serine-threonine phosp 95.1 0.024 5.2E-07 58.8 4.4 76 7-100 42-117 (476)
239 KOG3824 Huntingtin interacting 95.1 0.057 1.2E-06 52.9 6.7 75 7-99 120-194 (472)
240 COG4976 Predicted methyltransf 95.0 0.03 6.6E-07 52.6 4.4 61 11-89 3-63 (287)
241 PF10602 RPN7: 26S proteasome 95.0 0.33 7.1E-06 44.7 11.2 98 4-116 37-140 (177)
242 PF12862 Apc5: Anaphase-promot 94.9 0.13 2.8E-06 42.0 7.6 65 12-85 7-71 (94)
243 KOG1941 Acetylcholine receptor 94.9 0.39 8.4E-06 48.3 12.0 103 6-116 165-273 (518)
244 smart00028 TPR Tetratricopepti 94.9 0.039 8.5E-07 33.6 3.6 30 90-119 2-32 (34)
245 COG4105 ComL DNA uptake lipopr 94.9 0.17 3.6E-06 48.8 9.1 68 57-124 36-107 (254)
246 PLN03218 maturation of RBCL 1; 94.8 0.37 7.9E-06 56.6 13.6 94 4-116 543-641 (1060)
247 PLN03218 maturation of RBCL 1; 94.8 0.36 7.9E-06 56.6 13.4 60 57-116 651-711 (1060)
248 PRK04841 transcriptional regul 94.8 0.24 5.3E-06 57.5 12.2 97 7-116 456-558 (903)
249 PLN03081 pentatricopeptide (PP 94.7 0.13 2.9E-06 57.9 9.7 119 5-141 428-547 (697)
250 COG4700 Uncharacterized protei 94.7 1.1 2.3E-05 41.2 13.2 97 3-116 124-220 (251)
251 KOG0551 Hsp90 co-chaperone CNS 94.7 0.29 6.3E-06 48.7 10.3 66 4-87 120-185 (390)
252 PF14561 TPR_20: Tetratricopep 94.6 0.35 7.5E-06 39.2 9.2 41 76-116 9-49 (90)
253 KOG3081 Vesicle coat complex C 94.5 1.1 2.4E-05 43.4 13.5 60 57-116 209-268 (299)
254 COG2912 Uncharacterized conser 94.3 0.25 5.5E-06 48.0 9.1 83 53-136 179-262 (269)
255 KOG1585 Protein required for f 94.2 0.76 1.6E-05 44.0 11.6 103 6-120 113-221 (308)
256 COG3071 HemY Uncharacterized e 94.2 1 2.3E-05 45.8 13.2 103 3-123 84-188 (400)
257 KOG3785 Uncharacterized conser 94.2 0.49 1.1E-05 47.5 10.7 61 60-120 156-217 (557)
258 KOG2796 Uncharacterized conser 94.1 0.06 1.3E-06 51.7 4.2 66 5-88 254-319 (366)
259 PLN03081 pentatricopeptide (PP 94.1 0.58 1.2E-05 52.8 12.9 97 4-119 392-492 (697)
260 KOG4642 Chaperone-dependent E3 94.1 0.059 1.3E-06 51.1 4.0 61 60-120 15-76 (284)
261 PF05843 Suf: Suppressor of fo 94.0 0.43 9.3E-06 47.4 10.5 98 5-120 3-102 (280)
262 PF14561 TPR_20: Tetratricopep 93.9 0.25 5.4E-06 40.0 6.9 58 56-113 23-82 (90)
263 KOG1585 Protein required for f 93.8 2.9 6.2E-05 40.2 14.6 97 8-116 36-137 (308)
264 PF10579 Rapsyn_N: Rapsyn N-te 93.8 0.42 9.1E-06 37.3 7.5 67 3-84 6-72 (80)
265 KOG1586 Protein required for f 93.5 1.5 3.4E-05 41.6 12.2 92 13-116 83-181 (288)
266 PLN03077 Protein ECB2; Provisi 93.5 0.36 7.8E-06 55.8 10.1 117 7-141 593-710 (857)
267 KOG4507 Uncharacterized conser 93.5 0.23 5E-06 52.7 7.4 101 8-124 217-319 (886)
268 PF04184 ST7: ST7 protein; In 93.4 0.52 1.1E-05 49.4 9.8 62 54-115 258-321 (539)
269 COG4976 Predicted methyltransf 93.3 0.12 2.7E-06 48.7 4.6 59 64-122 4-63 (287)
270 KOG2471 TPR repeat-containing 93.0 0.097 2.1E-06 54.3 3.8 94 6-101 286-381 (696)
271 PF13374 TPR_10: Tetratricopep 92.9 0.19 4.1E-06 33.5 4.1 28 57-84 4-31 (42)
272 PF09613 HrpB1_HrpK: Bacterial 92.9 4.1 8.9E-05 36.6 13.5 111 3-132 10-120 (160)
273 PF08631 SPO22: Meiosis protei 92.7 4.1 8.9E-05 40.3 15.0 133 3-141 35-171 (278)
274 PF12862 Apc5: Anaphase-promot 92.7 1 2.2E-05 36.7 8.8 69 65-133 8-85 (94)
275 COG3629 DnrI DNA-binding trans 92.4 0.78 1.7E-05 45.2 9.0 67 50-116 148-214 (280)
276 PLN03077 Protein ECB2; Provisi 92.3 2 4.3E-05 49.7 14.0 97 3-119 554-655 (857)
277 PF10952 DUF2753: Protein of u 92.2 1.2 2.7E-05 37.8 8.7 83 4-89 2-88 (140)
278 PF12968 DUF3856: Domain of Un 92.1 1.8 3.9E-05 36.8 9.5 70 8-84 60-129 (144)
279 KOG2610 Uncharacterized conser 92.1 0.99 2.1E-05 45.1 9.3 34 4-37 104-137 (491)
280 KOG2610 Uncharacterized conser 92.0 1.3 2.9E-05 44.2 10.0 52 61-112 181-232 (491)
281 PF04184 ST7: ST7 protein; In 92.0 1.4 3E-05 46.4 10.7 92 10-119 175-290 (539)
282 PF10300 DUF3808: Protein of u 91.7 0.79 1.7E-05 49.0 9.1 85 16-118 246-334 (468)
283 PF06957 COPI_C: Coatomer (COP 91.6 0.89 1.9E-05 47.4 9.0 128 4-135 205-346 (422)
284 KOG1915 Cell cycle control pro 91.6 1.6 3.6E-05 45.5 10.5 91 10-119 411-501 (677)
285 PF13374 TPR_10: Tetratricopep 91.3 0.44 9.6E-06 31.7 4.5 33 3-35 2-34 (42)
286 KOG1915 Cell cycle control pro 91.1 5.1 0.00011 42.0 13.5 99 3-119 73-172 (677)
287 PF02259 FAT: FAT domain; Int 90.8 3.5 7.5E-05 41.8 12.5 98 5-102 186-305 (352)
288 PRK13184 pknD serine/threonine 90.3 2 4.4E-05 49.5 11.0 99 10-124 482-588 (932)
289 KOG3364 Membrane protein invol 90.2 1.3 2.8E-05 38.5 7.1 76 57-133 34-115 (149)
290 KOG1070 rRNA processing protei 90.2 2.8 6.1E-05 49.2 11.7 93 10-120 1537-1632(1710)
291 PF08631 SPO22: Meiosis protei 89.9 5.4 0.00012 39.5 12.6 90 13-112 3-107 (278)
292 KOG3364 Membrane protein invol 89.0 3 6.6E-05 36.3 8.4 39 57-95 73-111 (149)
293 KOG1308 Hsp70-interacting prot 88.9 0.18 4E-06 50.2 1.2 57 65-121 124-181 (377)
294 KOG2396 HAT (Half-A-TPR) repea 88.8 4.9 0.00011 42.4 11.4 87 21-125 89-177 (568)
295 PF05843 Suf: Suppressor of fo 88.1 7.5 0.00016 38.5 12.2 97 5-119 37-138 (280)
296 COG2912 Uncharacterized conser 87.5 2.8 6E-05 40.9 8.3 74 7-98 185-258 (269)
297 KOG1081 Transcription factor N 87.2 0.26 5.6E-06 52.3 1.1 42 317-358 373-418 (463)
298 cd02681 MIT_calpain7_1 MIT: do 86.9 3.7 8E-05 32.0 7.1 34 2-35 5-38 (76)
299 PF10516 SHNi-TPR: SHNi-TPR; 86.8 1.1 2.5E-05 29.8 3.7 28 57-84 3-30 (38)
300 COG2976 Uncharacterized protei 86.7 15 0.00031 34.3 11.9 96 17-115 48-152 (207)
301 KOG2053 Mitochondrial inherita 86.1 5.5 0.00012 44.8 10.5 82 7-107 47-128 (932)
302 PF07721 TPR_4: Tetratricopept 85.8 1.1 2.3E-05 27.0 2.9 23 91-113 3-25 (26)
303 PF04910 Tcf25: Transcriptiona 85.8 14 0.00031 38.0 13.0 115 2-116 39-166 (360)
304 COG4649 Uncharacterized protei 85.5 22 0.00048 32.5 12.1 106 5-124 96-202 (221)
305 PF09986 DUF2225: Uncharacteri 85.3 5 0.00011 38.1 8.7 74 13-98 135-209 (214)
306 PF07079 DUF1347: Protein of u 85.3 3.9 8.6E-05 42.6 8.3 73 62-137 469-541 (549)
307 cd02682 MIT_AAA_Arch MIT: doma 85.0 6.2 0.00013 30.7 7.5 62 2-66 5-67 (75)
308 COG3947 Response regulator con 84.8 4.8 0.0001 39.6 8.2 95 22-116 243-340 (361)
309 COG3914 Spy Predicted O-linked 84.7 7 0.00015 42.0 10.1 93 14-124 78-178 (620)
310 TIGR03504 FimV_Cterm FimV C-te 84.3 1.9 4E-05 29.8 3.9 25 93-117 3-27 (44)
311 PF10255 Paf67: RNA polymerase 83.8 2.3 5E-05 44.2 6.1 60 56-116 123-191 (404)
312 PF07720 TPR_3: Tetratricopept 83.7 3.4 7.3E-05 27.2 4.7 32 4-35 2-35 (36)
313 PF10373 EST1_DNA_bind: Est1 D 83.4 2.6 5.7E-05 41.2 6.3 60 74-134 1-62 (278)
314 PRK15180 Vi polysaccharide bio 83.4 9 0.0002 40.2 9.9 92 7-116 293-384 (831)
315 PF04212 MIT: MIT (microtubule 83.3 7.9 0.00017 29.3 7.5 33 2-34 4-36 (69)
316 PF10373 EST1_DNA_bind: Est1 D 83.2 5.3 0.00011 39.1 8.3 62 22-101 1-62 (278)
317 PF10602 RPN7: 26S proteasome 82.9 31 0.00067 31.6 12.7 69 56-124 37-108 (177)
318 KOG0686 COP9 signalosome, subu 82.8 8.1 0.00018 39.7 9.3 97 5-116 152-256 (466)
319 cd02683 MIT_1 MIT: domain cont 82.5 7.7 0.00017 30.3 7.2 34 2-35 5-38 (77)
320 KOG1070 rRNA processing protei 82.5 15 0.00032 43.7 12.1 99 2-116 1563-1661(1710)
321 TIGR02561 HrpB1_HrpK type III 82.4 17 0.00036 32.4 9.9 84 6-107 13-96 (153)
322 PF10516 SHNi-TPR: SHNi-TPR; 81.5 2.8 6.1E-05 27.9 3.8 31 4-34 2-32 (38)
323 COG4455 ImpE Protein of avirul 80.3 12 0.00027 35.4 8.8 76 63-139 9-85 (273)
324 PF02259 FAT: FAT domain; Int 80.0 24 0.00052 35.5 12.1 107 2-122 145-292 (352)
325 COG3898 Uncharacterized membra 80.0 37 0.0008 35.1 12.6 100 12-123 197-297 (531)
326 PF07720 TPR_3: Tetratricopept 79.3 5.1 0.00011 26.3 4.4 24 90-113 2-25 (36)
327 PF09613 HrpB1_HrpK: Bacterial 78.9 25 0.00054 31.7 10.1 66 57-122 12-78 (160)
328 PF07721 TPR_4: Tetratricopept 78.9 2.8 6.1E-05 25.1 2.9 23 57-79 3-25 (26)
329 cd02678 MIT_VPS4 MIT: domain c 78.2 13 0.00027 28.8 7.2 33 2-34 5-37 (75)
330 PF04910 Tcf25: Transcriptiona 77.7 12 0.00027 38.5 9.0 68 57-124 42-140 (360)
331 PF04781 DUF627: Protein of un 77.4 8.8 0.00019 32.2 6.3 63 5-85 35-108 (111)
332 KOG0546 HSP90 co-chaperone CPR 77.3 1.8 3.9E-05 43.6 2.6 72 9-98 281-352 (372)
333 PF08424 NRDE-2: NRDE-2, neces 77.1 23 0.00051 35.8 10.8 82 24-123 6-100 (321)
334 KOG2041 WD40 repeat protein [G 76.3 13 0.00028 40.8 8.7 82 4-115 797-878 (1189)
335 PF11817 Foie-gras_1: Foie gra 76.3 22 0.00048 34.5 10.0 83 20-114 155-243 (247)
336 PF13281 DUF4071: Domain of un 76.3 40 0.00086 34.9 12.0 63 8-87 184-258 (374)
337 COG3898 Uncharacterized membra 75.3 76 0.0017 32.9 13.3 89 8-116 125-215 (531)
338 COG3118 Thioredoxin domain-con 75.2 16 0.00034 36.2 8.4 58 58-115 137-194 (304)
339 cd02656 MIT MIT: domain contai 75.2 17 0.00038 27.9 7.3 33 3-35 6-38 (75)
340 KOG4814 Uncharacterized conser 75.1 30 0.00065 37.8 11.0 68 55-122 354-428 (872)
341 PF14863 Alkyl_sulf_dimr: Alky 74.4 9.2 0.0002 33.7 6.1 50 3-70 70-119 (141)
342 KOG2047 mRNA splicing factor [ 74.3 58 0.0013 35.8 12.8 28 57-84 427-454 (835)
343 cd02680 MIT_calpain7_2 MIT: do 73.8 5.6 0.00012 31.0 4.0 34 2-35 5-38 (75)
344 PF11817 Foie-gras_1: Foie gra 73.8 18 0.0004 35.0 8.7 64 7-82 182-245 (247)
345 cd02684 MIT_2 MIT: domain cont 73.3 19 0.0004 28.0 6.9 34 2-35 5-38 (75)
346 PF07079 DUF1347: Protein of u 73.3 16 0.00035 38.2 8.3 59 3-80 462-520 (549)
347 KOG2047 mRNA splicing factor [ 73.2 56 0.0012 35.9 12.4 114 3-118 425-541 (835)
348 KOG0530 Protein farnesyltransf 72.2 61 0.0013 31.7 11.3 84 15-116 55-140 (318)
349 PF14863 Alkyl_sulf_dimr: Alky 71.9 11 0.00024 33.2 6.0 51 57-107 72-122 (141)
350 KOG1550 Extracellular protein 70.2 57 0.0012 35.8 12.4 89 7-117 292-392 (552)
351 KOG2300 Uncharacterized conser 70.2 86 0.0019 33.4 12.6 94 7-119 371-475 (629)
352 TIGR03504 FimV_Cterm FimV C-te 70.2 8.4 0.00018 26.6 3.8 26 59-84 3-28 (44)
353 smart00745 MIT Microtubule Int 69.8 28 0.00061 26.8 7.4 33 3-35 8-40 (77)
354 KOG3617 WD40 and TPR repeat-co 69.2 49 0.0011 37.4 11.2 111 6-116 861-994 (1416)
355 COG3914 Spy Predicted O-linked 68.4 43 0.00094 36.3 10.3 88 21-124 49-138 (620)
356 COG3629 DnrI DNA-binding trans 68.3 20 0.00044 35.4 7.5 64 3-84 153-216 (280)
357 cd02677 MIT_SNX15 MIT: domain 67.7 40 0.00086 26.2 7.6 34 2-35 5-38 (75)
358 COG0790 FOG: TPR repeat, SEL1 67.5 62 0.0013 31.8 11.2 97 3-118 109-220 (292)
359 KOG0529 Protein geranylgeranyl 67.5 56 0.0012 33.9 10.6 84 15-116 87-176 (421)
360 KOG1550 Extracellular protein 66.8 40 0.00086 37.0 10.3 98 6-118 247-357 (552)
361 KOG2461 Transcription factor B 65.4 3.6 7.9E-05 42.7 1.8 41 318-358 103-146 (396)
362 TIGR02561 HrpB1_HrpK type III 64.3 61 0.0013 28.8 8.9 63 57-119 12-74 (153)
363 KOG1310 WD40 repeat protein [G 64.2 15 0.00032 39.2 5.9 66 6-89 411-479 (758)
364 KOG0292 Vesicle coat complex C 63.9 79 0.0017 36.1 11.5 113 4-119 992-1115(1202)
365 KOG2300 Uncharacterized conser 63.9 85 0.0018 33.4 11.2 98 6-114 49-152 (629)
366 COG2909 MalT ATP-dependent tra 63.7 1.7E+02 0.0037 33.5 14.2 100 8-116 420-524 (894)
367 KOG2114 Vacuolar assembly/sort 63.6 36 0.00077 38.4 8.9 30 3-32 368-397 (933)
368 PF09670 Cas_Cas02710: CRISPR- 63.5 81 0.0018 32.8 11.4 65 5-85 133-199 (379)
369 COG5191 Uncharacterized conser 62.7 16 0.00036 36.3 5.6 69 57-125 109-179 (435)
370 COG5191 Uncharacterized conser 62.0 13 0.00028 37.0 4.7 29 65-93 152-180 (435)
371 KOG0985 Vesicle coat protein c 61.7 1.3E+02 0.0029 35.0 12.9 119 9-134 1054-1178(1666)
372 KOG3617 WD40 and TPR repeat-co 61.4 53 0.0011 37.2 9.6 106 11-116 808-939 (1416)
373 KOG2396 HAT (Half-A-TPR) repea 59.9 46 0.001 35.4 8.5 61 15-93 117-178 (568)
374 KOG1464 COP9 signalosome, subu 59.8 24 0.00052 34.5 6.0 50 67-116 39-92 (440)
375 PF04053 Coatomer_WDAD: Coatom 59.8 66 0.0014 34.2 10.0 26 4-29 348-373 (443)
376 KOG1839 Uncharacterized protei 59.7 27 0.00058 41.2 7.5 106 2-117 972-1085(1236)
377 PF08424 NRDE-2: NRDE-2, neces 58.1 2E+02 0.0044 29.0 13.0 80 19-116 47-129 (321)
378 PF10345 Cohesin_load: Cohesin 57.8 1.1E+02 0.0024 33.9 11.9 108 9-116 307-431 (608)
379 KOG0985 Vesicle coat protein c 57.3 70 0.0015 37.1 9.8 72 4-106 1195-1266(1666)
380 COG4941 Predicted RNA polymera 57.1 64 0.0014 32.7 8.6 62 57-118 331-395 (415)
381 PF11207 DUF2989: Protein of u 57.0 35 0.00077 31.9 6.5 56 6-76 144-199 (203)
382 PHA02537 M terminase endonucle 56.3 91 0.002 29.9 9.4 111 14-131 94-220 (230)
383 PF10579 Rapsyn_N: Rapsyn N-te 56.2 73 0.0016 25.1 7.1 59 58-116 9-70 (80)
384 PF10345 Cohesin_load: Cohesin 56.1 1.7E+02 0.0038 32.4 13.1 104 3-119 59-169 (608)
385 KOG4563 Cell cycle-regulated h 55.9 35 0.00076 34.8 6.7 34 2-35 40-73 (400)
386 COG2909 MalT ATP-dependent tra 55.0 1.1E+02 0.0024 34.9 10.9 83 8-103 463-551 (894)
387 KOG3783 Uncharacterized conser 54.8 1.4E+02 0.003 32.3 11.1 71 7-94 271-341 (546)
388 KOG0530 Protein farnesyltransf 54.1 89 0.0019 30.6 8.8 81 18-116 93-174 (318)
389 cd02679 MIT_spastin MIT: domai 53.9 77 0.0017 24.9 7.0 31 3-33 8-38 (79)
390 PF11207 DUF2989: Protein of u 53.9 79 0.0017 29.7 8.3 50 58-108 144-197 (203)
391 cd02682 MIT_AAA_Arch MIT: doma 53.5 56 0.0012 25.4 6.1 23 57-79 8-30 (75)
392 PF13281 DUF4071: Domain of un 53.5 2.2E+02 0.0048 29.5 12.2 63 57-119 181-257 (374)
393 TIGR02059 swm_rep_I cyanobacte 53.3 23 0.00049 29.1 4.0 24 335-358 76-99 (101)
394 PF08666 SAF: SAF domain; Int 52.5 9.7 0.00021 28.0 1.8 18 337-354 3-20 (63)
395 smart00386 HAT HAT (Half-A-TPR 51.5 24 0.00052 21.3 3.3 22 17-38 1-22 (33)
396 COG4455 ImpE Protein of avirul 51.2 61 0.0013 30.9 7.0 66 7-90 5-70 (273)
397 COG3947 Response regulator con 49.6 51 0.0011 32.7 6.5 57 6-80 282-338 (361)
398 COG0790 FOG: TPR repeat, SEL1 49.5 1.3E+02 0.0027 29.6 9.8 75 19-116 171-264 (292)
399 KOG0890 Protein kinase of the 49.3 3.8E+02 0.0083 34.4 14.9 99 5-116 1631-1729(2382)
400 cd02680 MIT_calpain7_2 MIT: do 48.6 86 0.0019 24.4 6.5 16 101-116 18-33 (75)
401 PRK15180 Vi polysaccharide bio 48.5 48 0.001 35.1 6.5 92 10-119 330-422 (831)
402 PF15015 NYD-SP12_N: Spermatog 48.4 73 0.0016 33.3 7.6 85 59-143 180-283 (569)
403 KOG2155 Tubulin-tyrosine ligas 48.1 17 0.00036 37.7 3.1 58 315-372 204-267 (631)
404 KOG2041 WD40 repeat protein [G 47.6 1.4E+02 0.003 33.4 9.8 70 54-134 795-864 (1189)
405 PF02064 MAS20: MAS20 protein 46.1 25 0.00055 30.1 3.5 30 7-36 67-96 (121)
406 KOG1839 Uncharacterized protei 45.6 52 0.0011 39.0 6.8 103 3-116 932-1042(1236)
407 PF12854 PPR_1: PPR repeat 45.2 49 0.0011 21.0 4.0 27 88-114 6-32 (34)
408 PF09205 DUF1955: Domain of un 44.9 1.5E+02 0.0032 26.1 7.9 34 84-117 115-148 (161)
409 PF01239 PPTA: Protein prenylt 44.5 51 0.0011 20.3 4.0 29 74-102 2-30 (31)
410 PF11846 DUF3366: Domain of un 44.5 64 0.0014 29.8 6.4 48 71-119 127-175 (193)
411 KOG0276 Vesicle coat complex C 44.1 50 0.0011 36.0 6.0 51 61-116 643-693 (794)
412 PF09797 NatB_MDM20: N-acetylt 43.9 1.1E+02 0.0024 31.4 8.6 48 68-115 196-243 (365)
413 KOG1258 mRNA processing protei 42.8 4.8E+02 0.01 28.6 13.0 98 4-119 298-397 (577)
414 PF04053 Coatomer_WDAD: Coatom 42.2 1.1E+02 0.0023 32.6 8.3 30 87-116 345-374 (443)
415 PF12739 TRAPPC-Trs85: ER-Golg 41.1 3.5E+02 0.0076 28.4 12.0 101 4-116 209-327 (414)
416 PF07219 HemY_N: HemY protein 40.8 70 0.0015 26.6 5.4 32 3-34 59-90 (108)
417 PF10938 YfdX: YfdX protein; 39.8 1.1E+02 0.0023 27.5 6.7 70 3-83 75-145 (155)
418 COG4649 Uncharacterized protei 39.5 1.5E+02 0.0033 27.3 7.4 53 66-118 69-123 (221)
419 KOG2168 Cullins [Cell cycle co 37.9 3.7E+02 0.0081 30.8 11.7 100 7-124 626-742 (835)
420 PF04190 DUF410: Protein of un 37.2 4E+02 0.0087 25.9 11.1 96 4-113 11-114 (260)
421 TIGR02710 CRISPR-associated pr 34.7 5.3E+02 0.011 26.8 11.6 60 8-80 135-196 (380)
422 COG5159 RPN6 26S proteasome re 33.0 4.8E+02 0.01 26.1 10.2 60 7-76 7-66 (421)
423 COG5091 SGT1 Suppressor of G2 32.2 1.4E+02 0.0031 29.2 6.5 95 11-116 3-106 (368)
424 cd02679 MIT_spastin MIT: domai 31.5 1.4E+02 0.003 23.5 5.3 17 70-86 4-20 (79)
425 KOG2581 26S proteasome regulat 31.0 1.1E+02 0.0024 31.8 5.8 58 63-120 217-279 (493)
426 KOG0276 Vesicle coat complex C 30.4 2.6E+02 0.0057 30.7 8.7 30 3-32 666-695 (794)
427 KOG4056 Translocase of outer m 30.3 86 0.0019 27.4 4.2 31 7-37 85-115 (143)
428 KOG3807 Predicted membrane pro 30.2 6.1E+02 0.013 25.9 10.7 30 88-117 272-303 (556)
429 KOG3616 Selective LIM binding 29.2 3.7E+02 0.008 30.4 9.6 25 90-114 662-686 (1636)
430 PF07219 HemY_N: HemY protein 28.9 3.3E+02 0.0072 22.4 7.9 47 57-103 61-107 (108)
431 KOG0739 AAA+-type ATPase [Post 28.9 1.5E+02 0.0033 29.8 6.1 31 5-35 12-42 (439)
432 KOG4151 Myosin assembly protei 28.8 63 0.0014 36.2 4.0 81 11-109 101-181 (748)
433 PRK13184 pknD serine/threonine 28.7 4.6E+02 0.0099 30.8 11.0 65 57-121 554-624 (932)
434 KOG1914 mRNA cleavage and poly 28.7 3.4E+02 0.0073 29.6 9.0 71 27-116 10-80 (656)
435 PF01535 PPR: PPR repeat; Int 28.1 95 0.0021 18.3 3.3 25 58-82 3-27 (31)
436 PF04212 MIT: MIT (microtubule 28.0 1.1E+02 0.0024 22.9 4.2 14 103-116 19-32 (69)
437 PF10255 Paf67: RNA polymerase 28.0 1E+02 0.0023 32.2 5.3 66 9-84 128-193 (404)
438 KOG2561 Adaptor protein NUB1, 27.9 5.2E+02 0.011 27.4 9.9 103 5-116 165-294 (568)
439 TIGR00985 3a0801s04tom mitocho 27.4 75 0.0016 28.2 3.5 31 7-37 94-125 (148)
440 KOG0890 Protein kinase of the 27.3 5.4E+02 0.012 33.2 11.5 63 3-85 1670-1732(2382)
441 KOG1497 COP9 signalosome, subu 26.9 5.4E+02 0.012 26.1 9.5 81 53-135 101-189 (399)
442 smart00317 SET SET (Su(var)3-9 26.4 77 0.0017 25.7 3.4 18 181-198 98-115 (116)
443 PF09670 Cas_Cas02710: CRISPR- 26.0 7.3E+02 0.016 25.7 11.2 62 56-117 132-197 (379)
444 cd02683 MIT_1 MIT: domain cont 25.4 3.2E+02 0.007 21.2 7.1 22 60-81 11-32 (77)
445 KOG0529 Protein geranylgeranyl 25.3 8.1E+02 0.017 25.7 11.0 60 65-124 85-147 (421)
446 KOG1497 COP9 signalosome, subu 24.9 7.4E+02 0.016 25.2 10.7 99 7-116 107-211 (399)
447 smart00858 SAF This domain fam 24.8 48 0.001 24.1 1.6 16 337-352 3-18 (64)
448 PF08969 USP8_dimer: USP8 dime 24.6 1.4E+02 0.003 25.0 4.6 32 2-33 37-68 (115)
449 PF00244 14-3-3: 14-3-3 protei 24.1 2.5E+02 0.0054 27.0 6.8 55 19-83 142-197 (236)
450 PF10077 DUF2314: Uncharacteri 23.8 58 0.0012 28.4 2.1 17 359-375 117-133 (133)
451 KOG4563 Cell cycle-regulated h 23.7 1.3E+02 0.0028 30.9 4.8 55 58-112 44-106 (400)
452 smart00671 SEL1 Sel1-like repe 23.1 1.5E+02 0.0032 18.3 3.6 27 90-116 2-32 (36)
453 PF08238 Sel1: Sel1 repeat; I 23.0 1.6E+02 0.0034 18.6 3.8 28 89-116 1-35 (39)
454 PRK10316 hypothetical protein; 22.8 3.4E+02 0.0073 25.6 7.0 61 5-82 129-196 (209)
455 PF05053 Menin: Menin; InterP 22.7 8.9E+02 0.019 26.6 10.9 67 71-139 302-372 (618)
456 PF11846 DUF3366: Domain of un 22.5 2.3E+02 0.005 25.9 6.1 30 57-86 146-175 (193)
457 PF13041 PPR_2: PPR repeat fam 22.4 2.6E+02 0.0056 19.0 6.0 28 57-84 5-32 (50)
458 PF03745 DUF309: Domain of unk 22.0 3.4E+02 0.0073 20.1 6.3 59 7-77 3-61 (62)
459 KOG2422 Uncharacterized conser 21.8 1.1E+03 0.024 26.0 11.7 114 2-115 283-404 (665)
460 KOG3616 Selective LIM binding 21.7 3E+02 0.0065 31.1 7.3 21 95-115 771-791 (1636)
461 PF13812 PPR_3: Pentatricopept 21.7 2E+02 0.0043 17.3 4.0 27 57-83 3-29 (34)
462 cd00280 TRFH Telomeric Repeat 21.5 4.8E+02 0.01 24.3 7.5 50 60-110 116-165 (200)
463 PF15297 CKAP2_C: Cytoskeleton 21.2 5.5E+02 0.012 26.3 8.7 72 61-134 106-183 (353)
464 PF02184 HAT: HAT (Half-A-TPR) 21.0 1.8E+02 0.0038 18.7 3.3 26 70-96 2-27 (32)
465 TIGR00756 PPR pentatricopeptid 20.5 2E+02 0.0043 17.1 3.8 22 61-82 6-27 (35)
466 cd02681 MIT_calpain7_1 MIT: do 20.5 1.8E+02 0.0038 22.7 4.0 14 68-81 19-32 (76)
No 1
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.82 E-value=5.7e-20 Score=175.55 Aligned_cols=104 Identities=31% Similarity=0.549 Sum_probs=100.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+|.+||.+++.++|++|++.|++||.++|.++. +|+|||.+|.++|+|+.|++||+.|
T Consensus 80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAV------------------yycNRAAAy~~Lg~~~~AVkDce~A 141 (304)
T KOG0553|consen 80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAV------------------YYCNRAAAYSKLGEYEDAVKDCESA 141 (304)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcch------------------HHHHHHHHHHHhcchHHHHHHHHHH
Confidence 5789999999999999999999999999999999988 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
|.+||.+.|+|-|+|.+|+.+|+|++|++.|+++| ++|++..
T Consensus 142 l~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~ 184 (304)
T KOG0553|consen 142 LSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNES 184 (304)
T ss_pred HhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHH
Confidence 99999999999999999999999999999999999 8886653
No 2
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.70 E-value=2.3e-16 Score=156.76 Aligned_cols=133 Identities=17% Similarity=0.339 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+...+..||.+|+.|+|..|+..|.+|+...+.... .++++.......+..+++|+|.|++++++|.+|+..|+++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~---~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS---FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc---CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 3567899999999999999999999999998876543 2334445566677889999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~ 137 (518)
|+++|+|+||+||+|+|+..+|+|+.|+..|++++ ..|+|.....++..+.++.++
T Consensus 284 Le~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~ 340 (397)
T KOG0543|consen 284 LELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIRE 340 (397)
T ss_pred HhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 777654433444444333333
No 3
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.66 E-value=8e-16 Score=138.38 Aligned_cols=108 Identities=26% Similarity=0.461 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++..||.+|+.|+|++|...|+.||+++|.... .+..++|.|||.|+++++.++.|+.+|.+|
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-------------e~rsIly~Nraaa~iKl~k~e~aI~dcsKa 160 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-------------EERSILYSNRAAALIKLRKWESAIEDCSKA 160 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-------------HHHHHHHhhhHHHHHHhhhHHHHHHHHHhh
Confidence 4678999999999999999999999999999988653 234569999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
|+++|++.+|+.|+|.+|..+..|++|+.+|++.+ .+|...
T Consensus 161 iel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ 202 (271)
T KOG4234|consen 161 IELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRR 202 (271)
T ss_pred HhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchH
Confidence 99999999999999999999999999999999999 777544
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.63 E-value=6.6e-16 Score=139.34 Aligned_cols=49 Identities=41% Similarity=0.738 Sum_probs=44.3
Q ss_pred cceeEeecccccccCCCCCCceEEee----CCEEEEEEcCCCCCCCeEEeecC
Q 035535 307 LYGLGLWALASFINHSCSPNARRVHV----GDYIIVHASRDVKAGEEITFAYF 355 (518)
Q Consensus 307 ~~~~gl~~~~s~~NHsC~PN~~~~~~----~~~~~v~A~rdI~~Geeit~sY~ 355 (518)
..+.+|||.++++||||.|||.+.++ ++.++|+|+|||++||||||||+
T Consensus 110 ~~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 110 RDGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred ccccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 45789999999999999999999998 78999999999999999999996
No 5
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=3.4e-15 Score=152.16 Aligned_cols=115 Identities=24% Similarity=0.410 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+++.+..||.+|+.|+|..|+.+|++||..+|+++. +|+|||.||.+++++..|+.||+.+
T Consensus 357 ~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~------------------lYsNRAac~~kL~~~~~aL~Da~~~ 418 (539)
T KOG0548|consen 357 KAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR------------------LYSNRAACYLKLGEYPEALKDAKKC 418 (539)
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 3677899999999999999999999999999999987 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
+++||++.++|+|+|.++..+.+|+.|+++|++++ .+| .+ .++...+.+|-+.
T Consensus 419 ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp---~~-~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 419 IELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDP---SN-AEAIDGYRRCVEA 472 (539)
T ss_pred HhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hh-HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 664 23 4555666666553
No 6
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=2.5e-14 Score=143.89 Aligned_cols=117 Identities=25% Similarity=0.384 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+.+++++||.+|+.|+|++||.+|++||+++|+.+. .|.|||.||..+|+|++.+++|.+|
T Consensus 114 ~A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epi------------------FYsNraAcY~~lgd~~~Vied~TkA 175 (606)
T KOG0547|consen 114 YAAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPI------------------FYSNRAACYESLGDWEKVIEDCTKA 175 (606)
T ss_pred HHHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCch------------------hhhhHHHHHHHHhhHHHHHHHHHHH
Confidence 4778999999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc--cccCCcHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD--AQASGSLETVNGFLEKSK 136 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~--p~~~~~~~~l~~~l~~~~ 136 (518)
|+++|+++|+|+|++.++..+|++++|+.+..-.-+. -++......+.+.+.+..
T Consensus 176 LEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a 232 (606)
T KOG0547|consen 176 LELNPDYVKALLRRASAHEQLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQA 232 (606)
T ss_pred hhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHH
Confidence 9999999999999999999999999999988765433 233333344445554443
No 7
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=2.6e-14 Score=145.74 Aligned_cols=104 Identities=22% Similarity=0.372 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.+++.+||.+|..|+|+.|+.+|+.||.++|.+.. +|+||+.||.++|+|++|++|..+.+
T Consensus 2 a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhv------------------lySnrsaa~a~~~~~~~al~da~k~~ 63 (539)
T KOG0548|consen 2 AVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHV------------------LYSNRSAAYASLGSYEKALKDATKTR 63 (539)
T ss_pred hhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccc------------------hhcchHHHHHHHhhHHHHHHHHHHHH
Confidence 567899999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
+++|+++|+|.|+|.++..+|+|++|+..|.++| .+|++...
T Consensus 64 ~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~d~~n~~L 106 (539)
T KOG0548|consen 64 RLNPDWAKGYSRKGAALFGLGDYEEAILAYSEGLEKDPSNKQL 106 (539)
T ss_pred hcCCchhhHHHHhHHHHHhcccHHHHHHHHHHHhhcCCchHHH
Confidence 9999999999999999999999999999999999 77765543
No 8
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=99.52 E-value=4.8e-14 Score=120.42 Aligned_cols=44 Identities=45% Similarity=0.750 Sum_probs=39.3
Q ss_pred EeecccccccCCCCCCceEEeeC--C--EEEEEEcCCCCCCCeEEeec
Q 035535 311 GLWALASFINHSCSPNARRVHVG--D--YIIVHASRDVKAGEEITFAY 354 (518)
Q Consensus 311 gl~~~~s~~NHsC~PN~~~~~~~--~--~~~v~A~rdI~~Geeit~sY 354 (518)
.++|.++++||||.|||...+.. + .+.++|+|||++|||||++|
T Consensus 69 ~~~~~~~~iNHsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFINHSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeCCCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 37888999999999999987653 2 69999999999999999999
No 9
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.50 E-value=9.8e-14 Score=137.30 Aligned_cols=115 Identities=22% Similarity=0.364 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
..+.+++.||.+|+.|+|..|.++|+.||.++|++.. -.+.+|.|||.+..++|+..+|+.||+.|
T Consensus 248 ~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~--------------~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 248 KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK--------------TNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc--------------hhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 4678999999999999999999999999999999765 12349999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNG 130 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~ 130 (518)
+++||...|+|.++|.|+..+++|++|+++|++++....+......+.+
T Consensus 314 l~iD~syikall~ra~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~ 362 (486)
T KOG0550|consen 314 LKIDSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLRE 362 (486)
T ss_pred hhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHH
Confidence 9999999999999999999999999999999999954333433333333
No 10
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.50 E-value=4e-13 Score=119.95 Aligned_cols=108 Identities=13% Similarity=0.150 Sum_probs=99.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++..|+|++|+..|.+++.++|.+.. +|.++|.++..+|++++|+..++++++
T Consensus 25 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~y~~Al~ 86 (144)
T PRK15359 25 ETVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWR------------------AHIALAGTWMMLKEYTTAINFYGHALM 86 (144)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 44667899999999999999999999999999877 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN 129 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~ 129 (518)
++|+++.+++++|.++..+|++++|+..|++++ ..|+++.......
T Consensus 87 l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 87 LDASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred cCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 999999999999999999999999999999999 8887776543333
No 11
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.49 E-value=2.8e-13 Score=139.08 Aligned_cols=114 Identities=25% Similarity=0.417 Sum_probs=102.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..|..+|+.+|..|+|++|+..|++||+++|+++. +|+++|.+++++|+|++|+.++++|+
T Consensus 2 ~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~------------------a~~~~a~~~~~~g~~~eAl~~~~~Al 63 (356)
T PLN03088 2 AKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAE------------------LYADRAQANIKLGNFTEAVADANKAI 63 (356)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 457889999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
+++|+++.+|+++|.+|+.+|+|++|+..|++++ ..|+++. +...+.+|...
T Consensus 64 ~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~----~~~~l~~~~~k 116 (356)
T PLN03088 64 ELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSR----FTKLIKECDEK 116 (356)
T ss_pred HhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHH
Confidence 9999999999999999999999999999999999 7776543 44445555443
No 12
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=99.47 E-value=1.3e-13 Score=133.26 Aligned_cols=115 Identities=18% Similarity=0.245 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
..+++++||.||++|.|++||++|++++..+|.++. .+.|||.+|+++.+|..|..||+.|+
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV------------------~~~NRA~AYlk~K~FA~AE~DC~~Ai 158 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPV------------------YHINRALAYLKQKSFAQAEEDCEAAI 158 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCCCCcc------------------chhhHHHHHHHHHHHHHHHHhHHHHH
Confidence 456899999999999999999999999999999887 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
.+|..+.|||-|+|.+-..||...+|.++++.+| +.|. ..++.+.+..+..+.
T Consensus 159 aLd~~Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LEP~----~~ELkK~~a~i~Sl~ 212 (536)
T KOG4648|consen 159 ALDKLYVKAYSRRMQARESLGNNMEAKKDCETVLALEPK----NIELKKSLARINSLR 212 (536)
T ss_pred HhhHHHHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhCcc----cHHHHHHHHHhcchH
Confidence 9999999999999999999999999999999999 7764 245666665555443
No 13
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.2e-12 Score=121.48 Aligned_cols=130 Identities=17% Similarity=0.195 Sum_probs=110.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...++++||.+|+.|+|.+|+..|..||....+-.....+...++.++.+....++.|.++|++..|+|.++++.|..+|
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998765544333444556778888888999999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
..+|+|+||||++|++.....+.++|..+|.++| ++|. ....+...++.+
T Consensus 258 ~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps---lasvVsrElr~l 308 (329)
T KOG0545|consen 258 RHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS---LASVVSRELRLL 308 (329)
T ss_pred hcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh---hHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 6653 334444444433
No 14
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=7.1e-13 Score=128.00 Aligned_cols=101 Identities=28% Similarity=0.449 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.|+.++..||.+|+.++|..|+..|+++|...-.+++ +.+.+|.|||.|.+.+|+|..|+.||.+|
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~d--------------lnavLY~NRAAa~~~l~NyRs~l~Dcs~a 145 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPD--------------LNAVLYTNRAAAQLYLGNYRSALNDCSAA 145 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCcc--------------HHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999999999988655544 33459999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.++|+|.|+++|-|.|++.|.++.+|.+..+..+
T Consensus 146 l~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 146 LKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 99999999999999999999999999999988877
No 15
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.38 E-value=6.5e-12 Score=111.18 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=94.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
..+.+...|..++..|++++|...|+-...++|.+.. .|+|+|.|+..+|+|.+|+..|.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~------------------y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFD------------------YWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4678889999999999999999999999999999987 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+.++|+++.++++.|.|++.+|+.+.|.++|+.++.
T Consensus 96 ~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 96 AQIKIDAPQAPWAAAECYLACDNVCYAIKALKAVVR 131 (157)
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999993
No 16
>KOG2084 consensus Predicted histone tail methylase containing SET domain [Chromatin structure and dynamics]
Probab=99.38 E-value=2.5e-12 Score=137.59 Aligned_cols=80 Identities=33% Similarity=0.606 Sum_probs=72.7
Q ss_pred cceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCC-eEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535 307 LYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGE-EITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE 384 (518)
Q Consensus 307 ~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Ge-eit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~ 384 (518)
..+.|+||..+++||||.||+...|++....+++..++.+++ ||+++|++..+++..|+. |...|.|.|.|++|.+|+
T Consensus 197 ~~~~~l~~~~~~~~hsC~pn~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~~~~~~~~r~~~l~~~~~f~c~c~rc~d~~ 276 (482)
T KOG2084|consen 197 FLGRGLFPGSSLFNHSCFPNISVIFDGRGLALLVPAGIDAGEEELTISYTDPLLSTASRQKQLRQSKLFSCQCPRCLDPT 276 (482)
T ss_pred cceeeecccchhcccCCCCCeEEEECCceeEEEeecccCCCCCEEEEeecccccCHHHHHHHHhhccceeeecCCCCCCC
Confidence 368999999999999999999999999999999999888887 999999999999999986 777888999999999886
Q ss_pred CC
Q 035535 385 GM 386 (518)
Q Consensus 385 ~~ 386 (518)
+.
T Consensus 277 ~~ 278 (482)
T KOG2084|consen 277 EL 278 (482)
T ss_pred cc
Confidence 43
No 17
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.35 E-value=1.3e-11 Score=116.15 Aligned_cols=119 Identities=14% Similarity=0.189 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhccC--HHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR-SRLRD--FDNALRDC 78 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~-~~lg~--~~~Al~~~ 78 (518)
+++.|...|..+...|++++|+..|.+|+.+.|+++. ++.++|.++ ...|+ +++|.+.+
T Consensus 72 ~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~------------------~~~~lA~aL~~~~g~~~~~~A~~~l 133 (198)
T PRK10370 72 NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAE------------------LYAALATVLYYQAGQHMTPQTREMI 133 (198)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcCCCCcHHHHHHH
Confidence 5778999999999999999999999999999999887 999999985 67787 59999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+++++++|+++.+++.+|.+++.+|+|++|+.+|++++ ..|.+.+....+ +-++..+.++
T Consensus 134 ~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i-~~i~~a~~~~ 194 (198)
T PRK10370 134 DKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQLV-ESINMAKLLQ 194 (198)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHHHH-HHHHHHHHHh
Confidence 99999999999999999999999999999999999999 777655544444 4455554443
No 18
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=2.7e-12 Score=118.81 Aligned_cols=119 Identities=19% Similarity=0.350 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+++.||.+|..+.|..||.+|++||.+.|..+. .|-|||.||+++++++.+.+||.+|
T Consensus 9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~------------------Y~tnralchlk~~~~~~v~~dcrra 70 (284)
T KOG4642|consen 9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVAS------------------YYTNRALCHLKLKHWEPVEEDCRRA 70 (284)
T ss_pred HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcch------------------hhhhHHHHHHHhhhhhhhhhhHHHH
Confidence 4688999999999999999999999999999999887 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-h-ccccCCcHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-V-DAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~-~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++++|+.++++|.+|.+++....|++|+..+++|. + ..........+...+..++.+
T Consensus 71 lql~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~ 129 (284)
T KOG4642|consen 71 LQLDPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKK 129 (284)
T ss_pred HhcChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhC
Confidence 99999999999999999999999999999999995 2 211222334566666665543
No 19
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.30 E-value=5.2e-11 Score=104.64 Aligned_cols=104 Identities=13% Similarity=0.210 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++......|..++..|++++|+..|++++..+|.++. ++.++|.++.++|++++|+..++++
T Consensus 16 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~ 77 (135)
T TIGR02552 16 QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSR------------------YWLGLAACCQMLKEYEEAIDAYALA 77 (135)
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566788999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++++|+++..++.+|.++...|++++|+..|++++ ..|+++.
T Consensus 78 ~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 78 AALDPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred HhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 99999999999999999999999999999999999 7775544
No 20
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=99.27 E-value=5.1e-12 Score=128.24 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+++++|.+|+.+.|+.|+..|++||+++|+.+. .+.|||.++++.++|..|+.|+.+|
T Consensus 3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~------------------~~anRa~a~lK~e~~~~Al~Da~ka 64 (476)
T KOG0376|consen 3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAI------------------YFANRALAHLKVESFGGALHDALKA 64 (476)
T ss_pred hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCccee------------------eechhhhhheeechhhhHHHHHHhh
Confidence 4678999999999999999999999999999999987 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
++++|...|+|+|+|.+...+++|.+|+..|++.. ..|+++. +.+.+..|.....
T Consensus 65 ie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~----~~r~~~Ec~~~vs 120 (476)
T KOG0376|consen 65 IELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPD----ATRKIDECNKIVS 120 (476)
T ss_pred hhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHH----HHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 7775554 4455556655543
No 21
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.25 E-value=4.6e-11 Score=119.80 Aligned_cols=102 Identities=17% Similarity=0.107 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.+.++|..+...|++++|+..|++++.++|+++. +|.++|.++..+|++++|+..+++++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~Al 125 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMAD------------------AYNYLGIYLTQAGNFDAAYEAFDSVL 125 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 566889999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+++|++..+|+++|.+++..|++++|++.|++++ ..|+++
T Consensus 126 ~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~ 166 (296)
T PRK11189 126 ELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP 166 (296)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence 9999999999999999999999999999999999 777665
No 22
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.22 E-value=8.2e-11 Score=130.05 Aligned_cols=97 Identities=21% Similarity=0.329 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..++++|+.+|+.|+|++|+..|+++|.+.|+ +. .|.|+|.||+++|+|++|++++++|+
T Consensus 127 a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~-~~------------------~~~n~a~~~~~l~~~~~Ai~~~~~al 187 (615)
T TIGR00990 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPD-PV------------------YYSNRAACHNALGDWEKVVEDTTAAL 187 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-hH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567899999999999999999999999999885 33 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
+++|++.++|+++|.+|..+|+|++|+.+|.++...
T Consensus 188 ~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~ 223 (615)
T TIGR00990 188 ELDPDYSKALNRRANAYDGLGKYADALLDLTASCII 223 (615)
T ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999888743
No 23
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.20 E-value=7.6e-11 Score=121.91 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++...+.|..+-++|++++|+.+|++||++.|..++ +|.|+|.+|-.+|+-..|++++.+||
T Consensus 388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAd------------------a~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFAD------------------ALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHH------------------HHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 556677777777888888888888888888877766 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
.++|..+.|+-++|.+|...|+..+|++.|+.++ +.|+.|+..-++...+
T Consensus 450 ~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 450 QINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred hcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 9999999999999999999999999999999999 8888887655544443
No 24
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.20 E-value=5.3e-11 Score=91.91 Aligned_cols=68 Identities=22% Similarity=0.361 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHH
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCE 79 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~ 79 (518)
+++..|...|..++..|+|++|+..|+++|+++|+++. +++|+|.++.++| ++.+|+++++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~------------------~~~~~g~~~~~~~~~~~~A~~~~~ 62 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAE------------------AYYNLGLAYMKLGKDYEEAIEDFE 62 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHH------------------HHHHHHHHHHHTTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhCccHHHHHHHHH
Confidence 46889999999999999999999999999999999877 9999999999999 7999999999
Q ss_pred HHHhcCC
Q 035535 80 QALKIES 86 (518)
Q Consensus 80 ~al~l~p 86 (518)
++++++|
T Consensus 63 ~al~l~P 69 (69)
T PF13414_consen 63 KALKLDP 69 (69)
T ss_dssp HHHHHST
T ss_pred HHHHcCc
Confidence 9999998
No 25
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.11 E-value=1.5e-10 Score=119.78 Aligned_cols=119 Identities=15% Similarity=0.204 Sum_probs=86.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.++.+.||.+-..+.|+.|+.+|.+|+.+.|+++. ++.|+|-+|...|..+-|+..|++||
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~------------------a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAV------------------AHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchh------------------hccceEEEEeccccHHHHHHHHHHHH
Confidence 466778888888888888888888888888887766 67777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+++|+.+.||.++|.++-..|+..+|.++|.+|+ ..|.+++...++....+...+++
T Consensus 314 ~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e 371 (966)
T KOG4626|consen 314 ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIE 371 (966)
T ss_pred hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccch
Confidence 7777777777777777777777777777777777 66666666556655555544443
No 26
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.10 E-value=7.7e-11 Score=123.55 Aligned_cols=61 Identities=36% Similarity=0.482 Sum_probs=46.2
Q ss_pred ccccccCCCCCCceEE---eeC-CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCC
Q 035535 315 LASFINHSCSPNARRV---HVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKF 382 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~---~~~-~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~ 382 (518)
.+.|+||||+|||..- +.| -+|-|+|.|+|++|||||+.|-....+.+..+ +.|.-+.|+.
T Consensus 193 laRFiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYqf~rYGr~AQ~-------CyCgeanC~G 257 (729)
T KOG4442|consen 193 LARFINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQFDRYGRDAQP-------CYCGEANCRG 257 (729)
T ss_pred HHHhhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecccccccccccc-------cccCCccccc
Confidence 4679999999999743 333 28899999999999999999987665543222 4466688875
No 27
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.07 E-value=1.7e-09 Score=92.29 Aligned_cols=105 Identities=16% Similarity=0.108 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.+...|..+++.|+|++|+..|.+++...|++.. . ..+++++|.++++.|++++|+..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~----~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 66 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY----A-----------PNAHYWLGEAYYAQGKYADAAKAFLAVV 66 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc----c-----------HHHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 467889999999999999999999999999887532 0 1178999999999999999999999999
Q ss_pred hcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
..+|++ +.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 67 ~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 110 (119)
T TIGR02795 67 KKYPKSPKAPDALLKLGMSLQELGDKEKAKATLQQVIKRYPGSS 110 (119)
T ss_pred HHCCCCCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCCh
Confidence 998885 6789999999999999999999999999 666544
No 28
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.06 E-value=1.5e-09 Score=119.93 Aligned_cols=112 Identities=18% Similarity=0.157 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|++++.++|.... +|.++|.++..+|++++|+.++++++
T Consensus 331 a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~------------------~~~~la~~~~~~g~~~eA~~~~~~al 392 (615)
T TIGR00990 331 AIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQ------------------SYIKRASMNLELGDPDKAEEDFDKAL 392 (615)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778888888889999999999999888887665 77788888888888888888888888
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+++|+++.+|+.+|.+++.+|++++|+.+|++++ ..|++......+...+
T Consensus 393 ~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~ 443 (615)
T TIGR00990 393 KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQ 443 (615)
T ss_pred HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888 6665544333333333
No 29
>PRK15331 chaperone protein SicA; Provisional
Probab=99.06 E-value=1.1e-09 Score=97.37 Aligned_cols=116 Identities=14% Similarity=0.137 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+...|-.+|.+|+|++|...|+-...++|.++. .+..+|.|+..+++|++|+..+..|
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~------------------Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPD------------------YTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHH------------------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4677888999999999999999999999999999876 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~ 135 (518)
..++++++...|+.|.|++.+|+.+.|+.+|..++..|.+....+....++..+
T Consensus 98 ~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a~~~~~~~~l~~~A~~~L~~l 151 (165)
T PRK15331 98 FTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELVNERTEDESLRAKALVYLEAL 151 (165)
T ss_pred HHcccCCCCccchHHHHHHHhCCHHHHHHHHHHHHhCcchHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999997665544444444444433
No 30
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.04 E-value=9.1e-10 Score=107.05 Aligned_cols=104 Identities=18% Similarity=0.231 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++...+.|+.++..|++.+|+..|..|++.+|++.. +++.||.+|+.+|+-..|+.|++++
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~------------------aifrRaT~yLAmGksk~al~Dl~rV 98 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQ------------------AIFRRATVYLAMGKSKAALQDLSRV 98 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHH------------------HHHHHHHHHhhhcCCccchhhHHHH
Confidence 4678889999999999999999999999999999865 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
|++.|+..-|...+|.+++.+|++++|..+|++.+ ..|++..
T Consensus 99 lelKpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~ 141 (504)
T KOG0624|consen 99 LELKPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGL 141 (504)
T ss_pred HhcCccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcch
Confidence 99999999999999999999999999999999999 6664443
No 31
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.04 E-value=6.9e-10 Score=89.33 Aligned_cols=83 Identities=17% Similarity=0.335 Sum_probs=73.1
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
+|+|+.|+..|++++...|.+.. ...++++|.|++++|+|++|+..+++ ++.+|.++..++.+
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~----------------~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~ 64 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPN----------------SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLL 64 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHH----------------HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChh----------------HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHH
Confidence 68999999999999999986311 11788899999999999999999999 89999999999999
Q ss_pred HHHHHhccChHHHHHHHHHH
Q 035535 96 GKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 96 g~al~~lg~~~~A~~~~~~a 115 (518)
|.+++.+|+|++|++.|+++
T Consensus 65 a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 65 ARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhCCHHHHHHHHhcC
Confidence 99999999999999999875
No 32
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.04 E-value=2.4e-09 Score=99.34 Aligned_cols=104 Identities=18% Similarity=0.141 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.....+|..++..|++..|...+++||+.+|++.. +|.-+|..|.++|+.+.|-+.|++|+
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~------------------a~~~~A~~Yq~~Ge~~~A~e~YrkAl 96 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYL------------------AHLVRAHYYQKLGENDLADESYRKAL 96 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcCChhhHHHHHHHHH
Confidence 456678999999999999999999999999999877 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS 124 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~ 124 (518)
+++|++...+.+.|.-++..|+|++|.+.|++|+.+|..+.-
T Consensus 97 sl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~ 138 (250)
T COG3063 97 SLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEP 138 (250)
T ss_pred hcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCc
Confidence 999999999999999999999999999999999988877653
No 33
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.01 E-value=3.3e-09 Score=84.64 Aligned_cols=97 Identities=25% Similarity=0.398 Sum_probs=90.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|++++|+..+.+++...|.+.. ++.++|.++...+++++|++.+++++.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 63 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNAD------------------AYYNLAAAYYKLGKYEEALEDYEKALEL 63 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4678999999999999999999999999887654 8999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.|.+..+++.+|.++...|++++|...+.+++ ..|
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 64 DPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99 (100)
T ss_pred CCcchhHHHHHHHHHHHHHhHHHHHHHHHHHHccCC
Confidence 99999999999999999999999999999988 443
No 34
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.00 E-value=1.4e-09 Score=83.81 Aligned_cols=63 Identities=22% Similarity=0.380 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hcc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDA 119 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p 119 (518)
+|.++|.+++..|+|++|+..++++++++|+++.+|+++|.++..+| ++++|+++|++++ ++|
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 89999999999999999999999999999999999999999999999 7999999999999 665
No 35
>PRK12370 invasion protein regulator; Provisional
Probab=98.99 E-value=3.8e-09 Score=115.17 Aligned_cols=90 Identities=13% Similarity=0.032 Sum_probs=56.0
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC 94 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~ 94 (518)
..+++++|+..+++|++++|+++. ++..+|.++...|++++|+..+++|++++|+++.+++.
T Consensus 316 ~~~~~~~A~~~~~~Al~ldP~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~ 377 (553)
T PRK12370 316 KQNAMIKAKEHAIKATELDHNNPQ------------------ALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYY 377 (553)
T ss_pred cchHHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 345566666666666666666554 56666666666666666666666666666666666666
Q ss_pred HHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 95 KGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+|.++...|++++|+..|++++ .+|.++
T Consensus 378 lg~~l~~~G~~~eAi~~~~~Al~l~P~~~ 406 (553)
T PRK12370 378 YGWNLFMAGQLEEALQTINECLKLDPTRA 406 (553)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCCh
Confidence 6666666666666666666666 555443
No 36
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.99 E-value=7.2e-10 Score=116.20 Aligned_cols=120 Identities=15% Similarity=0.244 Sum_probs=105.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
..+.|...||.+--+++++.||.+|.+||.++|+.+- +|.-+|.=+....+|+.|...|+.|
T Consensus 420 sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY------------------ayTLlGhE~~~~ee~d~a~~~fr~A 481 (638)
T KOG1126|consen 420 SPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY------------------AYTLLGHESIATEEFDKAMKSFRKA 481 (638)
T ss_pred CcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch------------------hhhhcCChhhhhHHHHhHHHHHHhh
Confidence 4688999999999999999999999999999999876 8888899999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
|.++|.|..|||-+|.+|+..++++.|.-.|++|+ ..|.+....--+...++++++.+
T Consensus 482 l~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d 540 (638)
T KOG1126|consen 482 LGVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKD 540 (638)
T ss_pred hcCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhh
Confidence 99999999999999999999999999999999999 77766654444555555555444
No 37
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.99 E-value=3.5e-09 Score=116.70 Aligned_cols=120 Identities=13% Similarity=0.034 Sum_probs=102.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.++..|......|.+++|...+..+++++|++.. ++.+++.++.+++++++|+..++++
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~------------------a~~~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSE------------------AFILMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3677888999999999999999999999999999876 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+..+|+++.+++.+|.++..+|+|++|+..|++++ ..|+++...-.+...+.+..+.+
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~ 205 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALW 205 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHH
Confidence 99999999999999999999999999999999999 66666665555566665554443
No 38
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.96 E-value=8.7e-09 Score=117.83 Aligned_cols=112 Identities=10% Similarity=-0.089 Sum_probs=87.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+.+.|..+.+.|++++|+..|.+++.++|+++. ++.|+|.++..+|++++|+..+++|+
T Consensus 609 ~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~------------------a~~nLG~aL~~~G~~eeAi~~l~~AL 670 (987)
T PRK09782 609 ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSN------------------YQAALGYALWDSGDIAQSREMLERAH 670 (987)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345667788888888888888888888888888766 88888888888888888888888888
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+++|+++.+++.+|.++..+|++++|+..|++++ ..|+..........+.
T Consensus 671 ~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~ 721 (987)
T PRK09782 671 KGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQN 721 (987)
T ss_pred HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHH
Confidence 8888888888888888888888888888888888 6765544433333333
No 39
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.95 E-value=6.9e-09 Score=92.55 Aligned_cols=98 Identities=13% Similarity=0.183 Sum_probs=87.5
Q ss_pred HHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 035535 23 VQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSL 102 (518)
Q Consensus 23 i~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~l 102 (518)
...|+++++++|++ +.++|.++...|+|++|+..+++++.++|.++.+|+.+|.++..+
T Consensus 13 ~~~~~~al~~~p~~---------------------~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~ 71 (144)
T PRK15359 13 EDILKQLLSVDPET---------------------VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMML 71 (144)
T ss_pred HHHHHHHHHcCHHH---------------------HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 46789999998873 457899999999999999999999999999999999999999999
Q ss_pred cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 103 NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 103 g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
|+|++|+..|++++ ..|+++.....+...+...++.++.
T Consensus 72 g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eA 111 (144)
T PRK15359 72 KEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLA 111 (144)
T ss_pred hhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999 8998888888787777776666543
No 40
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.92 E-value=2.1e-08 Score=92.31 Aligned_cols=88 Identities=17% Similarity=0.104 Sum_probs=78.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..+...|++++|+..|.+++...|+... ...++.++|.++.++|++++|+..+++++
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---------------~~~~~~~la~~~~~~g~~~~A~~~~~~al 99 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---------------RSYILYNMGIIYASNGEHDKALEYYHQAL 99 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556788999999999999999999999998776431 01289999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccCh
Q 035535 83 KIESSHFKALLCKGKILLSLNRY 105 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~ 105 (518)
+++|.+..+++.+|.++..+|+.
T Consensus 100 ~~~p~~~~~~~~lg~~~~~~g~~ 122 (172)
T PRK02603 100 ELNPKQPSALNNIAVIYHKRGEK 122 (172)
T ss_pred HhCcccHHHHHHHHHHHHHcCCh
Confidence 99999999999999999998884
No 41
>PRK11189 lipoprotein NlpI; Provisional
Probab=98.92 E-value=1.6e-08 Score=101.37 Aligned_cols=96 Identities=13% Similarity=0.012 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..+...|+|++|+..|.++++++|++.. ++.|+|.++...|++++|+++++++
T Consensus 97 ~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 97 MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------------AYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4577889999999999999999999999999999876 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++++|+++...+.. ..+...+++++|+..|.+++
T Consensus 159 l~~~P~~~~~~~~~-~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 159 YQDDPNDPYRALWL-YLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHhCCCCHHHHHHH-HHHHccCCHHHHHHHHHHHH
Confidence 99988765211111 12233455566666654443
No 42
>PRK12370 invasion protein regulator; Provisional
Probab=98.91 E-value=1.5e-08 Score=110.47 Aligned_cols=105 Identities=15% Similarity=0.002 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI 98 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a 98 (518)
+++|+..|++|++++|+++. +++++|.++..+|++++|+..++++++++|.++.+++.++.+
T Consensus 354 ~~~A~~~~~~Al~l~P~~~~------------------a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~ 415 (553)
T PRK12370 354 YIVGSLLFKQANLLSPISAD------------------IKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWI 415 (553)
T ss_pred HHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence 67899999999999999877 899999999999999999999999999999999888888888
Q ss_pred HHhccChHHHHHHHHHHH-hc-cccCCcHHHHHHHHHHHHHHHHH
Q 035535 99 LLSLNRYSMALDCFKETL-VD-AQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 99 l~~lg~~~~A~~~~~~al-~~-p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
++..|++++|+..+++++ .. |+++.....+...+...++.++.
T Consensus 416 ~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA 460 (553)
T PRK12370 416 TYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELA 460 (553)
T ss_pred HHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHH
Confidence 999999999999999998 43 55554445555555555554433
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=2.2e-08 Score=91.66 Aligned_cols=99 Identities=17% Similarity=0.060 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+.|+... ...++.|+|.++..+|++++|+..+++|+
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~---------------~~~~~~~lg~~~~~~g~~~eA~~~~~~Al 99 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYD---------------RSYILYNIGLIHTSNGEHTKALEYYFQAL 99 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchh---------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567788999999999999999999999998765321 11289999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHH-------hccChHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILL-------SLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~-------~lg~~~~A~~~~~~al 116 (518)
.++|.+..++..+|.++. .+|++++|+..+.+++
T Consensus 100 ~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 100 ERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 999999999999999999 8888876655555543
No 44
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.89 E-value=2.2e-08 Score=101.14 Aligned_cols=94 Identities=17% Similarity=0.252 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.|.-.|-++...++-..|++.|++|++++|.+.. +|+.+|++|--++...=|+-++++|+++
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyR------------------AWYGLGQaYeim~Mh~YaLyYfqkA~~~ 427 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYR------------------AWYGLGQAYEIMKMHFYALYYFQKALEL 427 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHH------------------HHhhhhHHHHHhcchHHHHHHHHHHHhc
Confidence 4444555555555555555555555555555443 5555555555555555555555555555
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|++...|..+|.||..+++.++|+.||++++
T Consensus 428 kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai 459 (559)
T KOG1155|consen 428 KPNDSRLWVALGECYEKLNRLEEAIKCYKRAI 459 (559)
T ss_pred CCCchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 55555555555555555555555555555555
No 45
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.87 E-value=4e-08 Score=92.99 Aligned_cols=99 Identities=15% Similarity=0.155 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|++.+++++
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~al 92 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYL------------------AYLALALYYQQLGELEKAEDSFRRAL 92 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567788999999999999999999999999888765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
+.+|.+..+++.+|.++...|++++|++.|++++..+
T Consensus 93 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 129 (234)
T TIGR02521 93 TLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP 129 (234)
T ss_pred hhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999543
No 46
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.86 E-value=1.6e-08 Score=102.06 Aligned_cols=115 Identities=18% Similarity=0.237 Sum_probs=108.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
.||-+--+++.++|+.+|++||.++|.... +|.-.|.=|+.+++-..|++.+++|++++|.+
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~------------------aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D 397 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKLNPKYLS------------------AWTLMGHEYVEMKNTHAAIESYRRAVDINPRD 397 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhcCcchhH------------------HHHHhhHHHHHhcccHHHHHHHHHHHhcCchh
Confidence 477788899999999999999999999877 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
.+|||-+|++|..++-+.=|+-+|++|+ ..|.|+-.+..+.+...++.++++.
T Consensus 398 yRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eA 451 (559)
T KOG1155|consen 398 YRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEA 451 (559)
T ss_pred HHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHH
Confidence 9999999999999999999999999999 8999998889999988888887765
No 47
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.86 E-value=8.5e-09 Score=78.47 Aligned_cols=64 Identities=31% Similarity=0.422 Sum_probs=58.8
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 59 SNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 59 ~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+.+|..+++.|+|++|+..++++++.+|+++.+++.+|.++..+|++++|+..|++++ ..|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 3678999999999999999999999999999999999999999999999999999999 888654
No 48
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.84 E-value=4.5e-08 Score=94.58 Aligned_cols=108 Identities=15% Similarity=0.163 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+...|..++..|+|++|+..|++++...|.++. ...+++++|.++++.|++++|+..++++
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~---------------~~~a~~~la~~~~~~~~~~~A~~~~~~~ 96 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPY---------------AEQAQLDLAYAYYKSGDYAEAIAAADRF 96 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchh---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999987653 0117899999999999999999999999
Q ss_pred HhcCCCchH---HHHHHHHHHHhc--------cChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFK---ALLCKGKILLSL--------NRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~k---a~~~~g~al~~l--------g~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++.+|+++. +++.+|.+++.. |++++|++.|++++ ..|+++..
T Consensus 97 l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 151 (235)
T TIGR03302 97 IRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYA 151 (235)
T ss_pred HHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhH
Confidence 999998876 799999999987 89999999999999 77765543
No 49
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.84 E-value=3.1e-08 Score=83.86 Aligned_cols=97 Identities=23% Similarity=0.278 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
..++-.+|..+-..|+.+.|++.|.++|.+.|..++ +|.|||+++.-.|+.++|++|+++|+
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raS------------------ayNNRAQa~RLq~~~e~ALdDLn~Al 104 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERAS------------------AYNNRAQALRLQGDDEEALDDLNKAL 104 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccchH------------------hhccHHHHHHHcCChHHHHHHHHHHH
Confidence 345667899999999999999999999999999988 99999999999999999999999999
Q ss_pred hcCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 83 KIESSH----FKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 83 ~l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
++..+. -.+|..+|.+|..+|+-+.|..+|..+..
T Consensus 105 eLag~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 105 ELAGDQTRTACQAFVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred HhcCccchHHHHHHHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 996543 35789999999999999999999999883
No 50
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=98.83 E-value=5.9e-08 Score=91.85 Aligned_cols=102 Identities=16% Similarity=0.166 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++...|++++|+..+++++
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~~~~~~~~~g~~~~A~~~~~~~~ 126 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGD------------------VLNNYGTFLCQQGKYEQAMQQFEQAI 126 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 456677899999999999999999999999887654 67777777777777777777777777
Q ss_pred hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
... |.....++.+|.++...|++++|...|.+++ ..|+++
T Consensus 127 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 169 (234)
T TIGR02521 127 EDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP 169 (234)
T ss_pred hccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh
Confidence 653 4455667777777777777777777777777 555433
No 51
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.81 E-value=1.5e-09 Score=105.85 Aligned_cols=99 Identities=20% Similarity=0.264 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+...+.++..++..|++++||+.|+.||.++|..+. +|.+|+.+++++++...|+.||+.|
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~------------------l~~kr~sv~lkl~kp~~airD~d~A 174 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAI------------------LYAKRASVFLKLKKPNAAIRDCDFA 174 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhcccccccccCCchhh------------------hcccccceeeeccCCchhhhhhhhh
Confidence 4567788899999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
++++|+..+.|-.+|.+...+|+|++|..+|..+...
T Consensus 175 ~ein~Dsa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 175 IEINPDSAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hccCcccccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999943
No 52
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.80 E-value=4.8e-08 Score=91.94 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=91.8
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
.++.++++..+.+++..+|++.. +|.++|.++..+|++++|+..+++|++++|+++..++.+
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~------------------~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~l 113 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSE------------------QWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAAL 113 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 56779999999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHH-HhccC--hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 96 GKIL-LSLNR--YSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 96 g~al-~~lg~--~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
|.++ ...|+ +++|.+.+++++ .+|+++.....+.......++.+
T Consensus 114 A~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~ 161 (198)
T PRK10370 114 ATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYA 161 (198)
T ss_pred HHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHH
Confidence 9986 67787 599999999999 88888776555555544444333
No 53
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=98.80 E-value=4.6e-08 Score=111.99 Aligned_cols=104 Identities=12% Similarity=0.105 Sum_probs=86.1
Q ss_pred hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535 17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG 96 (518)
Q Consensus 17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g 96 (518)
|++++|+..|.+++.++|+ +. ++.++|.++.++|++++|+..++++++++|+++.+++.+|
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-~~------------------a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG 650 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-AN------------------AYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALG 650 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-HH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 5555555555555555553 32 8999999999999999999999999999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 97 KILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 97 ~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
.++...|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus 651 ~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~ 694 (987)
T PRK09782 651 YALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMA 694 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 99999999999999999999 88888877666666666655544
No 54
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.79 E-value=4.8e-08 Score=108.53 Aligned_cols=60 Identities=18% Similarity=0.128 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.++|.++.+.|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++
T Consensus 286 a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al 345 (656)
T PRK15174 286 IVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLA 345 (656)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 444555555555555555555555555555555555555555555555555555555544
No 55
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.79 E-value=5e-08 Score=99.11 Aligned_cols=78 Identities=14% Similarity=0.224 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
+|+.||+.++-+++|++|+.|++++++++|.+.-+|..++.++++.+++++++..|+.+. ..|.-|+...-..+.+..
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~~Evy~~fAeiLtD 474 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNCPEVYNLFAEILTD 474 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHhh
Confidence 455555555555555555555555555555555555555555555555555555555555 444444433333344433
No 56
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.79 E-value=2.2e-08 Score=105.30 Aligned_cols=100 Identities=21% Similarity=0.249 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
.+|...|..+.++++++.|.-.|++|+.++|.+.. ..+..|..+.++|+.++|+..+++|+.
T Consensus 490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsv------------------i~~~~g~~~~~~k~~d~AL~~~~~A~~ 551 (638)
T KOG1126|consen 490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSV------------------ILCHIGRIQHQLKRKDKALQLYEKAIH 551 (638)
T ss_pred HHHHhhhhheeccchhhHHHHHHHhhhcCCccchh------------------HHhhhhHHHHHhhhhhHHHHHHHHHHh
Confidence 34555555555555555555555555555555443 444555555555555555555555555
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+||.++-.-|.+|.+++.+++|++|+..+++.- ..|++
T Consensus 552 ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~e 590 (638)
T KOG1126|consen 552 LDPKNPLCKYHRASILFSLGRYVEALQELEELKELVPQE 590 (638)
T ss_pred cCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcch
Confidence 555555555555555555555555555555554 44433
No 57
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=98.78 E-value=7.7e-09 Score=115.73 Aligned_cols=60 Identities=37% Similarity=0.577 Sum_probs=45.5
Q ss_pred ccccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCC
Q 035535 315 LASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKF 382 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~ 382 (518)
.+.+|||||.|||..- +.|+ +|+|.|.|+|.+|||||..|-.+.... ..-..|.-+.|+.
T Consensus 939 iAr~InHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYkF~~e~~--------kipClCgap~Crg 1002 (1005)
T KOG1080|consen 939 IARFINHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYKFPTEDD--------KIPCLCGAPNCRG 1002 (1005)
T ss_pred hhheeecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecccccccc--------ccccccCCCcccc
Confidence 4789999999999743 3343 899999999999999999998765431 2334555577763
No 58
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.78 E-value=9e-08 Score=92.91 Aligned_cols=115 Identities=13% Similarity=0.052 Sum_probs=100.2
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHH
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR---DFDNALRD 77 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg---~~~~Al~~ 77 (518)
++++.|...|..++..|++..|...|.+|+++.|+++. .+.-.|.+++... .-.++...
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~------------------~~~g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPE------------------ILLGLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcCCcccHHHHHH
Confidence 35788999999999999999999999999999999987 7888888887764 46789999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
+++|+.+||++..+++.+|..++..|+|.+|...++..+ ..|.+......++..+.
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia 272 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIA 272 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 999999999999999999999999999999999999999 67665555444544443
No 59
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.77 E-value=7.9e-08 Score=91.13 Aligned_cols=120 Identities=17% Similarity=0.130 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+-+..+|..++..|+|.+|+..++++..+.|++.. +|.-+|.+|.++|++++|-..+.++++
T Consensus 101 ~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~------------------~~~~lgaaldq~Gr~~~Ar~ay~qAl~ 162 (257)
T COG5010 101 ELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWE------------------AWNLLGAALDQLGRFDEARRAYRQALE 162 (257)
T ss_pred HHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChh------------------hhhHHHHHHHHccChhHHHHHHHHHHH
Confidence 34556899999999999999999999999999988 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccc-cCCcHHHHHHHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ-ASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~-~~~~~~~l~~~l~~~~~~~~~ 141 (518)
+.|+.+..+.++|..|+-.|+++.|...+..+...|. ++...+++..+.....++.+.
T Consensus 163 L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A 221 (257)
T COG5010 163 LAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA 221 (257)
T ss_pred hccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence 9999999999999999999999999999999996554 444456666666555555544
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.77 E-value=1.9e-08 Score=99.98 Aligned_cols=120 Identities=17% Similarity=0.131 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.-|...|..+.+.|++++|+..|++|++++|++.. +..+++.++...|+++++.+.+....
T Consensus 146 ~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~------------------~~~~l~~~li~~~~~~~~~~~l~~~~ 207 (280)
T PF13429_consen 146 ARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD------------------ARNALAWLLIDMGDYDEAREALKRLL 207 (280)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHCCChHHHHHHHHHHH
Confidence 455777888888888888999999999988888766 77778888888888888777777777
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+..|+++..+..+|.++..+|++++|+..|++++ ..|+|+.....+..++...++.++
T Consensus 208 ~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~ 266 (280)
T PF13429_consen 208 KAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDE 266 (280)
T ss_dssp HH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-------
T ss_pred HHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccc
Confidence 7777788888888888888888888888888888 677777776777777766655543
No 61
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.77 E-value=1.8e-08 Score=76.62 Aligned_cols=64 Identities=17% Similarity=0.212 Sum_probs=59.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
.+|..+++.|+|++|+..|++++...|.++. +++.+|.++..+|++++|+..++++++++|+
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~ 63 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQDPDNPE------------------AWYLLGRILYQQGRYDEALAYYERALELDPD 63 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCCSTTHHH------------------HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 5799999999999999999999999999877 9999999999999999999999999999998
Q ss_pred ch
Q 035535 88 HF 89 (518)
Q Consensus 88 ~~ 89 (518)
++
T Consensus 64 ~p 65 (65)
T PF13432_consen 64 NP 65 (65)
T ss_dssp -H
T ss_pred CC
Confidence 75
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.75 E-value=1e-07 Score=88.70 Aligned_cols=109 Identities=17% Similarity=0.118 Sum_probs=97.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...|..++..+.+.|+.+.|-+.|++|+.++|++.+ ++.|.|.-+...|+|++|...+++|+
T Consensus 69 ~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~Gd------------------VLNNYG~FLC~qg~~~eA~q~F~~Al 130 (250)
T COG3063 69 YLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGD------------------VLNNYGAFLCAQGRPEEAMQQFERAL 130 (250)
T ss_pred HHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccc------------------hhhhhhHHHHhCCChHHHHHHHHHHH
Confidence 456777888999999999999999999999999988 99999999999999999999999998
Q ss_pred hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535 83 KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN 129 (518)
Q Consensus 83 ~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~ 129 (518)
.-- |....+|-++|.|-+..|+++.|..+|++++ .+|+++.....+.
T Consensus 131 ~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a 180 (250)
T COG3063 131 ADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELA 180 (250)
T ss_pred hCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHH
Confidence 763 5667899999999999999999999999999 8988887644443
No 63
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.74 E-value=1e-07 Score=105.15 Aligned_cols=98 Identities=8% Similarity=-0.023 Sum_probs=94.9
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
++++.+...++.+++.+++++|+..+++++..+|+++. +++++|.++.++|+|++|+..|++
T Consensus 118 d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~------------------~~~~~a~~l~~~g~~~~A~~~y~~ 179 (694)
T PRK15179 118 DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR------------------EILLEAKSWDEIGQSEQADACFER 179 (694)
T ss_pred CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH------------------HHHHHHHHHHHhcchHHHHHHHHH
Confidence 35778899999999999999999999999999999987 999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++..+|++++++..+|.++..+|+.++|...|++++
T Consensus 180 ~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~ 215 (694)
T PRK15179 180 LSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGL 215 (694)
T ss_pred HHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999
No 64
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=2.6e-08 Score=103.19 Aligned_cols=97 Identities=12% Similarity=0.164 Sum_probs=91.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-...+|..|+-.|+|+.|+++|+.||...|++.. +|..+|.++..-.+..+|+..|.+|+++
T Consensus 432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~------------------lWNRLGAtLAN~~~s~EAIsAY~rALqL 493 (579)
T KOG1125|consen 432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYL------------------LWNRLGATLANGNRSEEAISAYNRALQL 493 (579)
T ss_pred HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHH------------------HHHHhhHHhcCCcccHHHHHHHHHHHhc
Confidence 3445789999999999999999999999999876 9999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.|.++.++|++|.++..+|.|.+|..+|-.|| ..+
T Consensus 494 qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 494 QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999 443
No 65
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=98.73 E-value=7.6e-08 Score=106.95 Aligned_cols=114 Identities=11% Similarity=0.054 Sum_probs=96.6
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH----HHHHHHHHHh
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN----ALRDCEQALK 83 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~----Al~~~~~al~ 83 (518)
..|..++..|++++|+..|.+++...|+++. ++.++|.++..+|++++ |+..++++++
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~------------------~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~ 278 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARGLDGAA------------------LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ 278 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh
Confidence 3467778888899999999998888887765 89999999999999986 8999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
++|+++.++..+|.++...|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus 279 l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~ 335 (656)
T PRK15174 279 FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYT 335 (656)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 999999999999999999999999999999999 88877765555555554444433
No 66
>PLN02789 farnesyltranstransferase
Probab=98.72 E-value=1.5e-07 Score=94.88 Aligned_cols=105 Identities=11% Similarity=0.134 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH--HHHHHHHH
Q 035535 3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF--DNALRDCE 79 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~--~~Al~~~~ 79 (518)
...|..+|..+...| ++++|+..+++++..+|.+.. +|.+|+.++.+++++ ++++..++
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyq------------------aW~~R~~~l~~l~~~~~~~el~~~~ 132 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQ------------------IWHHRRWLAEKLGPDAANKELEFTR 132 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchH------------------HhHHHHHHHHHcCchhhHHHHHHHH
Confidence 345556666666655 456666666666666666554 677777666666653 56666666
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
+++++||.|..+|..+|.++..+|+|++|++++.+++ .+|.+...+
T Consensus 133 kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW 179 (320)
T PLN02789 133 KILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAW 179 (320)
T ss_pred HHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHH
Confidence 7777777777777777777777777777777777777 555554443
No 67
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.68 E-value=9.9e-08 Score=83.64 Aligned_cols=97 Identities=13% Similarity=0.107 Sum_probs=83.2
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 035535 24 QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN 103 (518)
Q Consensus 24 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg 103 (518)
+.|.+++...|++.. +..++|.+++..|++++|+..+++++.++|.++.+++.+|.++..+|
T Consensus 4 ~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~ 65 (135)
T TIGR02552 4 ATLKDLLGLDSEQLE------------------QIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLK 65 (135)
T ss_pred hhHHHHHcCChhhHH------------------HHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence 468899999888765 88999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 104 RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 104 ~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++++|+..|++++ ..|.++.....+.......++.
T Consensus 66 ~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~ 101 (135)
T TIGR02552 66 EYEEAIDAYALAAALDPDDPRPYFHAAECLLALGEP 101 (135)
T ss_pred HHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCH
Confidence 9999999999999 7776666555555555444443
No 68
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.68 E-value=2.7e-07 Score=80.60 Aligned_cols=104 Identities=15% Similarity=0.175 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+.+.+.|...++.|+|.+|++.++......|...-. ..+.+.++.+|++.++|++|+..+++-+
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---------------~qAqL~l~yayy~~~~y~~A~a~~~rFi 74 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---------------EQAQLDLAYAYYKQGDYEEAIAAYDRFI 74 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---------------HHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 5788999999999999999999999999988876541 1288899999999999999999999999
Q ss_pred hcCCCchH---HHHHHHHHHHhccC---------------hHHHHHHHHHHH-hcccc
Q 035535 83 KIESSHFK---ALLCKGKILLSLNR---------------YSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~~k---a~~~~g~al~~lg~---------------~~~A~~~~~~al-~~p~~ 121 (518)
+++|+|++ ++|.+|.+++.... ..+|...|++.+ ..|+.
T Consensus 75 rLhP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S 132 (142)
T PF13512_consen 75 RLHPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS 132 (142)
T ss_pred HhCCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence 99999865 89999999999877 778888888888 66643
No 69
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.66 E-value=3e-07 Score=90.10 Aligned_cols=103 Identities=11% Similarity=0.062 Sum_probs=89.3
Q ss_pred HHHHHHHHHH-HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 4 QQLRSKATEL-LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 4 ~~l~~~Gn~~-~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
..+...+..+ ++.|+|++|+..|++.+...|+... .++ +++.+|.+|+..|+|++|+..+.+++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~----a~~-----------A~y~LG~~y~~~g~~~~A~~~f~~vv 207 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY----QPN-----------ANYWLGQLNYNKGKKDDAAYYFASVV 207 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc----hHH-----------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4566677776 6679999999999999999998742 111 89999999999999999999999999
Q ss_pred hcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+..|+ .+.+++.+|.++..+|++++|...|++++ ..|+.
T Consensus 208 ~~yP~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~yP~s 250 (263)
T PRK10803 208 KNYPKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKYPGT 250 (263)
T ss_pred HHCCCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence 98877 47799999999999999999999999999 66643
No 70
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=98.66 E-value=1.7e-08 Score=98.42 Aligned_cols=64 Identities=39% Similarity=0.665 Sum_probs=53.3
Q ss_pred Eeecc-cccccCCCCCCceEEeeC-CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCC
Q 035535 311 GLWAL-ASFINHSCSPNARRVHVG-DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFE 383 (518)
Q Consensus 311 gl~~~-~s~~NHsC~PN~~~~~~~-~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~ 383 (518)
-||.. ++++||+|.|||.+.-.| +++.|+++|||++|||||-=|++.+.+. -.-.|.|.-|...
T Consensus 191 qLwLGPaafINHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs~fFG~---------~N~~CeC~TCER~ 256 (453)
T KOG2589|consen 191 QLWLGPAAFINHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGSGFFGE---------NNEECECVTCERR 256 (453)
T ss_pred hheeccHHhhcCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecccccCC---------CCceeEEeecccc
Confidence 46665 589999999999988877 8999999999999999999999876442 3357999888765
No 71
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=2.2e-07 Score=96.19 Aligned_cols=114 Identities=18% Similarity=0.223 Sum_probs=86.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+.+.|..+|..+.|.+|+.+|..++...+.... ... -....+.|+|.++.+++.|++|+..+++||.+.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~--e~~---------~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~ 485 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLN--EKI---------FWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS 485 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccc--ccc---------chhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC
Confidence 455666666677777777777777644333211 000 012268999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
|.++.++-..|.+|..+|+++.|++.|.++| +.|++.-..+-+..
T Consensus 486 ~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ 531 (611)
T KOG1173|consen 486 PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKL 531 (611)
T ss_pred CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHH
Confidence 9999999999999999999999999999999 88765433333333
No 72
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.61 E-value=2.5e-07 Score=98.80 Aligned_cols=102 Identities=16% Similarity=0.234 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH--HHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR--DCEQ 80 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~--~~~~ 80 (518)
+..++..|..+..+|++.+|.+.|..|+.++|+++. ....+|.++++.|+..-|.. ....
T Consensus 684 ~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~------------------s~~Ala~~lle~G~~~la~~~~~L~d 745 (799)
T KOG4162|consen 684 ASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVP------------------SMTALAELLLELGSPRLAEKRSLLSD 745 (799)
T ss_pred HHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcH------------------HHHHHHHHHHHhCCcchHHHHHHHHH
Confidence 345688899999999999999999999999999987 88899999999999888888 9999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
|+++||.++++||.+|.++..+|+.++|.+||+.|+ +.+.+|
T Consensus 746 alr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 746 ALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred HHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 999999999999999999999999999999999999 766655
No 73
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.60 E-value=3.7e-07 Score=103.44 Aligned_cols=111 Identities=14% Similarity=0.107 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..+...|++++|+..|++++.++|.++. ++.+++.++...|++++|+..+++++
T Consensus 49 a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~l~~~g~~~eA~~~l~~~l 110 (765)
T PRK10049 49 ARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDD------------------YQRGLILTLADAGQYDEALVKAKQLV 110 (765)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345788999999999999999999999999999876 88899999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+.+|+++. ++.+|.++...|++++|+..|++++ ..|+++.....+..++
T Consensus 111 ~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l 160 (765)
T PRK10049 111 SGAPDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQAL 160 (765)
T ss_pred HhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 99999999 9999999999999999999999999 8887765544444444
No 74
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.59 E-value=1.4e-07 Score=72.23 Aligned_cols=67 Identities=15% Similarity=0.134 Sum_probs=50.5
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHH
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKAL 92 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~ 92 (518)
+++.|+|++|+..|++++...|++.. +++++|.|+++.|++++|...+++++..+|+++..+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPE------------------ARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHH------------------HHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 45678888888888888888887766 777888888888888888888888888888776666
Q ss_pred HHHHH
Q 035535 93 LCKGK 97 (518)
Q Consensus 93 ~~~g~ 97 (518)
.-++.
T Consensus 63 ~l~a~ 67 (68)
T PF14559_consen 63 QLLAQ 67 (68)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 55544
No 75
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.59 E-value=2.4e-07 Score=72.08 Aligned_cols=65 Identities=23% Similarity=0.328 Sum_probs=38.6
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
+.+++.++|++|+..+++++.++|.++. ++..+|.++.++|+|.+|+.+++++++.+|+++.
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~ 64 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPE------------------LWLQRARCLFQLGRYEEALEDLERALELSPDDPD 64 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccch------------------hhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHH
Confidence 4455566666666666666666665554 5666666666666666666666666666665555
Q ss_pred HHH
Q 035535 91 ALL 93 (518)
Q Consensus 91 a~~ 93 (518)
+..
T Consensus 65 ~~~ 67 (73)
T PF13371_consen 65 ARA 67 (73)
T ss_pred HHH
Confidence 443
No 76
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.58 E-value=8.1e-07 Score=85.75 Aligned_cols=105 Identities=14% Similarity=0.133 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--------cCHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL--------RDFDNAL 75 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l--------g~~~~Al 75 (518)
..+...|..+++.|+|++|+..|.++++..|+++.. ..+++++|.+++.. |++++|+
T Consensus 71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~---------------~~a~~~~g~~~~~~~~~~~~~~~~~~~A~ 135 (235)
T TIGR03302 71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA---------------DYAYYLRGLSNYNQIDRVDRDQTAAREAF 135 (235)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch---------------HHHHHHHHHHHHHhcccccCCHHHHHHHH
Confidence 467889999999999999999999999999987641 11688899999876 8999999
Q ss_pred HHHHHHHhcCCCchHHH-----------------HHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 76 RDCEQALKIESSHFKAL-----------------LCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 76 ~~~~~al~l~p~~~ka~-----------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+.+++++..+|++..++ +.+|..++..|++++|+..|++++ ..|+.|.
T Consensus 136 ~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~ 201 (235)
T TIGR03302 136 EAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPA 201 (235)
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcc
Confidence 99999999999986442 467888999999999999999999 6665543
No 77
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.58 E-value=5e-07 Score=103.05 Aligned_cols=105 Identities=21% Similarity=0.279 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++..+|.+.. ++..+|.+++..|++++|+..+++++
T Consensus 125 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 186 (899)
T TIGR02917 125 AELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLY------------------AKLGLAQLALAENRFDEARALIDEVL 186 (899)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChh------------------hHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778999999999999999999999999998766 88899999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
+.+|.+..+++.+|.++...|++++|+..|++++ ..|.++...
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~ 230 (899)
T TIGR02917 187 TADPGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVL 230 (899)
T ss_pred HhCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHH
Confidence 9999999999999999999999999999999999 777655443
No 78
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=98.56 E-value=1.4e-07 Score=96.46 Aligned_cols=102 Identities=26% Similarity=0.313 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---cCHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL---RDFDNALRDC 78 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l---g~~~~Al~~~ 78 (518)
.++..+.+||..|..+.+..||..|.+++...|.... +|.|||.++++. |+-..|+.||
T Consensus 373 ~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~------------------~l~nraa~lmkRkW~~d~~~AlrDc 434 (758)
T KOG1310|consen 373 NIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIY------------------LLENRAAALMKRKWRGDSYLALRDC 434 (758)
T ss_pred HHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchhH------------------HHHhHHHHHHhhhccccHHHHHHhH
Confidence 5788899999999999999999999999999998776 999999999986 5788999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
..|+++||...||+|+++.++..++++.+|+++...+. ..|.+
T Consensus 435 h~Alrln~s~~kah~~la~aL~el~r~~eal~~~~alq~~~Ptd 478 (758)
T KOG1310|consen 435 HVALRLNPSIQKAHFRLARALNELTRYLEALSCHWALQMSFPTD 478 (758)
T ss_pred HhhccCChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHhhcCchh
Confidence 99999999999999999999999999999999988777 55533
No 79
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=98.56 E-value=5.5e-07 Score=102.70 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=59.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+...|..+...|++++|+..|++++...|+++. ++.+++.++...|+ .+|+..+++++++.
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~------------------~~~~l~~~~~~~~~-~~A~~~~~~~~~~~ 833 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAV------------------VLNNLAWLYLELKD-PRALEYAEKALKLA 833 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence 344455555555555555555555555554433 55555555555555 55666666666666
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
|+++..+..+|.++..+|++++|+..|++++ ..|.++.....+...+
T Consensus 834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~ 881 (899)
T TIGR02917 834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALAL 881 (899)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHH
Confidence 6665556666666666666666666666666 4444443333333333
No 80
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.55 E-value=2.3e-06 Score=80.88 Aligned_cols=121 Identities=19% Similarity=0.194 Sum_probs=92.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+...|..++..|+|.+|+..|++.+...|..... + .+.+.+|.++++.|+|.+|+..+++.
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a----~-----------~A~l~la~a~y~~~~y~~A~~~~~~f 68 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYA----P-----------QAQLMLAYAYYKQGDYEEAIAAYERF 68 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTH----H-----------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHH----H-----------HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46789999999999999999999999999999886541 1 28899999999999999999999999
Q ss_pred HhcCCCch---HHHHHHHHHHHhcc-----------ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 82 LKIESSHF---KALLCKGKILLSLN-----------RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~---ka~~~~g~al~~lg-----------~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++..|+++ .++|.+|.+++.+. ...+|+..|+..+ ..|+.+ -.......+..++..
T Consensus 69 i~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~-y~~~A~~~l~~l~~~ 139 (203)
T PF13525_consen 69 IKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSE-YAEEAKKRLAELRNR 139 (203)
T ss_dssp HHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTST-THHHHHHHHHHHHHH
T ss_pred HHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCch-HHHHHHHHHHHHHHH
Confidence 99999875 58999999987764 3358999999999 777544 334454545454443
No 81
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.55 E-value=1.6e-06 Score=84.31 Aligned_cols=121 Identities=13% Similarity=0.069 Sum_probs=95.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+...|..++..|+|++|+..|++.+...|..+. ...+.+++|.+++++++|++|+..+++.
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~---------------a~~a~l~la~ayy~~~~y~~A~~~~e~f 95 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPY---------------SQQVQLDLIYAYYKNADLPLAQAAIDRF 95 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH---------------HHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3567888999999999999999999999999987643 1126789999999999999999999999
Q ss_pred HhcCCCch---HHHHHHHHHHHhccC------------------hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 82 LKIESSHF---KALLCKGKILLSLNR------------------YSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~---ka~~~~g~al~~lg~------------------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++.+|+++ .++|.+|.++..+++ ..+|++.|++.+ ..|+ +.........+..++..
T Consensus 96 i~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~-S~ya~~A~~rl~~l~~~ 173 (243)
T PRK10866 96 IRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPN-SQYTTDATKRLVFLKDR 173 (243)
T ss_pred HHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHH
Confidence 99999874 579999998766541 257889999999 7774 33334444444444433
No 82
>PLN02789 farnesyltranstransferase
Probab=98.53 E-value=1e-06 Score=88.98 Aligned_cols=114 Identities=11% Similarity=0.103 Sum_probs=98.2
Q ss_pred HHHHHHHHHHHHHhhhcH--HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEW--KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~--~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
+.+.|..+|..+.+.|++ ++++..+.++|+.+|.+.. +|.+|+-++..+|+|++|+++++
T Consensus 105 nyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~------------------AW~~R~w~l~~l~~~~eeL~~~~ 166 (320)
T PLN02789 105 NYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYH------------------AWSHRQWVLRTLGGWEDELEYCH 166 (320)
T ss_pred chHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHhhhHHHHHHHHH
Confidence 345688888888777764 7889999999999999877 99999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhc---cCh----HHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 80 QALKIESSHFKALLCKGKILLSL---NRY----SMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~l---g~~----~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
++|++||.|..+|+.++.++..+ +.+ ++++++..+++ ..|++...+..+..++.
T Consensus 167 ~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~ 228 (320)
T PLN02789 167 QLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFK 228 (320)
T ss_pred HHHHHCCCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHh
Confidence 99999999999999999999876 334 47888888999 89988887766666664
No 83
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.53 E-value=7.8e-08 Score=95.98 Aligned_cols=94 Identities=23% Similarity=0.375 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+++.+.+||.+++..+|.+|+..|+.||+.+|+++. .|.|||.+++.+++|++|+-++++.
T Consensus 48 ~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~------------------yy~nRAa~~m~~~~~~~a~~dar~~ 109 (486)
T KOG0550|consen 48 QAEEAKEEGNAFYKQKTYGNALKNYTFAIDMCPDNAS------------------YYSNRAATLMMLGRFEEALGDARQS 109 (486)
T ss_pred HHHHHHhhcchHHHHhhHHHHHHHHHHHHHhCccchh------------------hhchhHHHHHHHHhHhhcccchhhh
Confidence 4788999999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
++++|...+++.+.++++..+++..+|.+.|+
T Consensus 110 ~r~kd~~~k~~~r~~~c~~a~~~~i~A~~~~~ 141 (486)
T KOG0550|consen 110 VRLKDGFSKGQLREGQCHLALSDLIEAEEKLK 141 (486)
T ss_pred eecCCCccccccchhhhhhhhHHHHHHHHHhh
Confidence 99999999999999999999999999988877
No 84
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.53 E-value=1.5e-06 Score=90.36 Aligned_cols=63 Identities=19% Similarity=0.237 Sum_probs=49.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.+.++|.++.+.|++++|+..++++++.+|++..+++.+|.++...|++++|++.|++++ ..|
T Consensus 182 ~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 182 FYCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 566777778888888888888888888888888888888888888888888888888877 444
No 85
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=98.51 E-value=1.3e-06 Score=90.71 Aligned_cols=96 Identities=11% Similarity=0.052 Sum_probs=78.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...|..+++.|++++|+..|.++++..|+... ++..+|.++.+.|++++|++.++++++.+|
T Consensus 184 ~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~~~~~~p 245 (389)
T PRK11788 184 CELAQQALARGDLDAARALLKKALAADPQCVR------------------ASILLGDLALAQGDYAAAIEALERVEEQDP 245 (389)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHHHCh
Confidence 44556666666777777777777666665443 788999999999999999999999999998
Q ss_pred Cc-hHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 87 SH-FKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 87 ~~-~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
.+ ..++..++.+|...|++++|+..+++++ ..|+
T Consensus 246 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~ 281 (389)
T PRK11788 246 EYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPG 281 (389)
T ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 77 4578899999999999999999999999 6664
No 86
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.50 E-value=1.1e-06 Score=104.14 Aligned_cols=102 Identities=10% Similarity=0.007 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..+.+.|++++|+..|++++...|+++. ++.+++.++...|++++|++.++++++
T Consensus 604 ~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~------------------a~~~la~~~~~~g~~~eA~~~l~~ll~ 665 (1157)
T PRK11447 604 RIDLTLADWAQQRGDYAAARAAYQRVLTREPGNAD------------------ARLGLIEVDIAQGDLAAARAQLAKLPA 665 (1157)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 45667899999999999999999999999999876 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
.+|+++.++..+|.++..+|++++|++.|++++ ..|+++.
T Consensus 666 ~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~ 706 (1157)
T PRK11447 666 TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPP 706 (1157)
T ss_pred cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCc
Confidence 999999999999999999999999999999999 6655543
No 87
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.49 E-value=1.1e-06 Score=99.62 Aligned_cols=102 Identities=9% Similarity=-0.041 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+..+|..+...|++++|++.+++++...|.++. ++.++|.++...|++++|++.++++++
T Consensus 360 ~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~------------------l~~~lA~l~~~~g~~~~A~~~l~~al~ 421 (765)
T PRK10049 360 QGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQG------------------LRIDYASVLQARGWPRAAENELKKAEV 421 (765)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999876 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++|++..+++.+|.++..+|+|++|...+++++ ..|+++.
T Consensus 422 l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~ 462 (765)
T PRK10049 422 LEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPG 462 (765)
T ss_pred hCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHH
Confidence 999999999999999999999999999999999 7876663
No 88
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.49 E-value=2e-06 Score=93.39 Aligned_cols=99 Identities=17% Similarity=0.266 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--------------- 67 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--------------- 67 (518)
++.+..++|.+|.+|++++|...+.++|..+|.++. +|+.+|.+|-.
T Consensus 139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~------------------ay~tL~~IyEqrGd~eK~l~~~llAA 200 (895)
T KOG2076|consen 139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPI------------------AYYTLGEIYEQRGDIEKALNFWLLAA 200 (895)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchh------------------hHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 677889999999999999999999999999999876 44444554444
Q ss_pred -------------------ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 68 -------------------LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 68 -------------------lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+|++.+|.-.+.+||+.+|.+.+..++++..|..+|++..|+..|.+++ ..|
T Consensus 201 HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p 272 (895)
T KOG2076|consen 201 HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP 272 (895)
T ss_pred hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC
Confidence 4455555555666666666666666666666666666666666666655 444
No 89
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=98.48 E-value=8.7e-07 Score=104.94 Aligned_cols=111 Identities=17% Similarity=0.159 Sum_probs=80.3
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
.+|..++..|++++|+..|++++..+|+++. ++.++|.+++++|++++|+..++++++++|+
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~------------------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~ 335 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANPKDSE------------------ALGALGQAYSQQGDRARAVAQFEKALALDPH 335 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 4588889999999999999999999998766 7778888888888888888888888887776
Q ss_pred chH--------------HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 88 HFK--------------ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 88 ~~k--------------a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
+.. .+..+|.++...|++++|+..|++++ ..|+++.....+..++...+
T Consensus 336 ~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g 399 (1157)
T PRK11447 336 SSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARK 399 (1157)
T ss_pred ccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 542 12344667777777777777777777 66655444334444444333
No 90
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.47 E-value=1.3e-06 Score=89.63 Aligned_cols=60 Identities=20% Similarity=0.144 Sum_probs=36.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH---HHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA---LLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka---~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+++|+|.+|+++|+|++|+..|++||+++|++..+ ||++|.+|..+|++++|+++|++|+
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 56666666666666666666666666666665533 6666666666666666666666666
No 91
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=4.8e-07 Score=70.32 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=56.9
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
..+|++.++|++|++.+++++.++|+++..|+.+|.++..+|+|++|+++|++++ ..|+++
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 4678999999999999999999999999999999999999999999999999999 777443
No 92
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.45 E-value=4.9e-07 Score=92.79 Aligned_cols=58 Identities=14% Similarity=0.091 Sum_probs=46.7
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc---HHHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS---LETVNGFLEKSKKLEY 140 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~---~~~l~~~l~~~~~~~~ 140 (518)
..+|+++.+|+++|.+|+.+|+|++|+.+|++++ +.|++... +.++.-.+..+.+.++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dE 130 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKK 130 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHH
Confidence 3689999999999999999999999999999999 88877643 4555555555555443
No 93
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.44 E-value=2.3e-06 Score=76.32 Aligned_cols=94 Identities=17% Similarity=0.114 Sum_probs=50.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
....|..++..|+|++|+..|.+++...|+.. +..++.+++|.+++..|+|++|+..++. +.-.
T Consensus 51 ~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~---------------l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~ 114 (145)
T PF09976_consen 51 ALQLAKAAYEQGDYDEAKAALEKALANAPDPE---------------LKPLARLRLARILLQQGQYDEALATLQQ-IPDE 114 (145)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH---------------HHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCc
Confidence 33455556666666666666666665442221 1112555566666666666666665544 2223
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
+-.+.++..+|.+|...|++++|+..|++|
T Consensus 115 ~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 115 AFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 333445555666666666666666666555
No 94
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.44 E-value=3.4e-06 Score=72.31 Aligned_cols=98 Identities=22% Similarity=0.126 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+.+.|..+-..|+.++|+..|++++........ ..-++.++|.++..+|++++|+..+++++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~---------------~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD---------------RRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45788899999999999999999999986543321 112889999999999999999999999999
Q ss_pred cCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IESS---HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
-.|+ +......++.++..+|++++|+..+-.++
T Consensus 67 ~~p~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 67 EFPDDELNAALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HCCCccccHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 8887 77888889999999999999999998887
No 95
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.43 E-value=1.9e-06 Score=82.80 Aligned_cols=104 Identities=18% Similarity=0.151 Sum_probs=93.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+.+.+-.+++.|+|.+|.+.|..-|...|+... +++ +++-+|++++.+|+|+.|...+..+.+
T Consensus 142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~----~~n-----------A~yWLGe~~y~qg~y~~Aa~~f~~~~k 206 (262)
T COG1729 142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY----TPN-----------AYYWLGESLYAQGDYEDAAYIFARVVK 206 (262)
T ss_pred hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc----cch-----------hHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 45788999999999999999999999999998764 222 899999999999999999999999999
Q ss_pred cCCCch---HHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSHF---KALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~~---ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
-.|+++ .+++.+|.++..+|+.++|...|++++ ..|+.+
T Consensus 207 ~~P~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~ 249 (262)
T COG1729 207 DYPKSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTD 249 (262)
T ss_pred hCCCCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCH
Confidence 888764 579999999999999999999999999 776544
No 96
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.43 E-value=3.5e-06 Score=82.54 Aligned_cols=101 Identities=14% Similarity=0.162 Sum_probs=94.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.++.+...++..|++..||+..++.|++.|.+++ ++-.||.||...|+...|+.|...|-++
T Consensus 157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~------------------l~~~Rakc~i~~~e~k~AI~Dlk~askL 218 (504)
T KOG0624|consen 157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDAS------------------LRQARAKCYIAEGEPKKAIHDLKQASKL 218 (504)
T ss_pred HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhH------------------HHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 4566777788999999999999999999999987 8999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
..++..++|..+..++..|+.+.++...+++| ++|++..
T Consensus 219 s~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpdHK~ 258 (504)
T KOG0624|consen 219 SQDNTEGHYKISQLLYTVGDAENSLKEIRECLKLDPDHKL 258 (504)
T ss_pred cccchHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcchhh
Confidence 99999999999999999999999999999999 8887654
No 97
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.42 E-value=9.1e-07 Score=81.48 Aligned_cols=103 Identities=16% Similarity=0.096 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+.-+.++|+.+=..|-+.-|.--|++++.+.|..++ ++.-+|.-+..-|+|+.|.+.++.+
T Consensus 64 RA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~------------------vfNyLG~Yl~~a~~fdaa~eaFds~ 125 (297)
T COG4785 64 RAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSV 125 (297)
T ss_pred HHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHH------------------HHHHHHHHHHhcccchHHHHHhhhH
Confidence 4667788899988999999999999999999999887 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+++||.+--++.++|.+++--|+|.-|.+.|.+.- .+|+||
T Consensus 126 ~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DP 167 (297)
T COG4785 126 LELDPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQDDPNDP 167 (297)
T ss_pred hccCCcchHHHhccceeeeecCchHhhHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999988 778776
No 98
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=4.7e-07 Score=91.11 Aligned_cols=113 Identities=15% Similarity=0.139 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.++.++||..|..|++++|.+.|.+||.-+..... +++|.|..+-++|+.++|++.+-+.-
T Consensus 490 ~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~e------------------alfniglt~e~~~~ldeald~f~klh 551 (840)
T KOG2003|consen 490 AAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTE------------------ALFNIGLTAEALGNLDEALDCFLKLH 551 (840)
T ss_pred HHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHH------------------HHHHhcccHHHhcCHHHHHHHHHHHH
Confidence 567889999999999999999999999976544433 99999999999999999999998887
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
.+=-+++..++.++.+|..+.+..+|++.|-++. ..|++|.....+..++.
T Consensus 552 ~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlyd 603 (840)
T KOG2003|consen 552 AILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYD 603 (840)
T ss_pred HHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhh
Confidence 7777899999999999999999999999999999 88888866555555544
No 99
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.37 E-value=5e-06 Score=85.21 Aligned_cols=117 Identities=12% Similarity=0.108 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..++..+...+..|++++|...++..+...|+++. ++.-++.++++.++..+|++.+++++.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~------------------~~~~~~~i~~~~nk~~~A~e~~~kal~ 368 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPY------------------YLELAGDILLEANKAKEAIERLKKALA 368 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHh
Confidence 34566777888888999999999998888888876 777788899999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++|+.+-..+.+|.+|...|++.+|+..++..+ .+|++|..+..+.+.....+..
T Consensus 369 l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 369 LDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR 424 (484)
T ss_pred cCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence 999888888999999999999999999999988 8888888887777777665544
No 100
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.37 E-value=1.7e-06 Score=88.94 Aligned_cols=83 Identities=13% Similarity=0.088 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+..+|..++..|+|++|+..+++|+.++|.++. +|+++|.+++.+|+|++|+..++++
T Consensus 35 ~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~------------------a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 35 NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAK------------------AYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhc
Q 035535 82 LKIESSHFKALLCKGKILLSL 102 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~l 102 (518)
++++|++..+...++.+...+
T Consensus 97 l~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 97 ASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred HHhCCCCHHHHHHHHHHHHHH
Confidence 999999999888877766555
No 101
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.32 E-value=9e-07 Score=67.74 Aligned_cols=57 Identities=23% Similarity=0.269 Sum_probs=52.0
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+++.|+|++|+..+++++..+|++..+++.+|.+|...|++++|...+++++ ..|++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~ 58 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDN 58 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCH
Confidence 3678999999999999999999999999999999999999999999999999 66643
No 102
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.29 E-value=3.1e-06 Score=76.32 Aligned_cols=86 Identities=22% Similarity=0.300 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc----------CHHHHHHHHHHHHhcCCCc
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR----------DFDNALRDCEQALKIESSH 88 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg----------~~~~Al~~~~~al~l~p~~ 88 (518)
|+.|.+.|......+|.+++ .+.|=|.+++.+. -+++|+.-+++||.++|+.
T Consensus 7 FE~ark~aea~y~~nP~Dad------------------nL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~ 68 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDAD------------------NLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK 68 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred HHHHHHHHHHHHHhCcHhHH------------------HHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch
Confidence 78899999999999999877 7777777777664 3678999999999999999
Q ss_pred hHHHHHHHHHHHhccC-----------hHHHHHHHHHHH-hccccC
Q 035535 89 FKALLCKGKILLSLNR-----------YSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 89 ~ka~~~~g~al~~lg~-----------~~~A~~~~~~al-~~p~~~ 122 (518)
..+++.+|.+|..++. |++|.++|++|. .+|++.
T Consensus 69 hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne 114 (186)
T PF06552_consen 69 HDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNE 114 (186)
T ss_dssp HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-H
T ss_pred HHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 9999999999997765 788999999999 777543
No 103
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.29 E-value=2.1e-06 Score=67.68 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhc----CCC---chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 55 CLALSNRAEARSRLRDFDNALRDCEQALKI----ESS---HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l----~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.++.|+|.+|..+|+|++|+..+++++++ .++ ...+++++|.++..+|++++|++.|++++
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 348999999999999999999999999976 222 36789999999999999999999999998
No 104
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.27 E-value=5.6e-06 Score=86.21 Aligned_cols=130 Identities=14% Similarity=0.141 Sum_probs=100.3
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------------------------------------
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK--------------------------------------- 41 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~--------------------------------------- 41 (518)
+++++|..+|......++=..||..+.++++++|++...-+
T Consensus 317 ~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~ 396 (579)
T KOG1125|consen 317 QHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENE 396 (579)
T ss_pred HHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccc
Confidence 37899999999999999999999999999999998533200
Q ss_pred --------hhhHHHHHHHHH-H-----------HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535 42 --------QEASQLSKLKKS-L-----------CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS 101 (518)
Q Consensus 42 --------~~~~~~~~~~~~-l-----------~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~ 101 (518)
.....+.++.+. + .-++.-+|..|.-.|+|++|+..++.||..+|++...|.|+|..+..
T Consensus 397 ~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN 476 (579)
T KOG1125|consen 397 DFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLAN 476 (579)
T ss_pred cccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcC
Confidence 000001111110 0 12556678888889999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 102 LNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 102 lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
-.+.++|+..|++|+ +.|++....-++..
T Consensus 477 ~~~s~EAIsAY~rALqLqP~yVR~RyNlgI 506 (579)
T KOG1125|consen 477 GNRSEEAISAYNRALQLQPGYVRVRYNLGI 506 (579)
T ss_pred CcccHHHHHHHHHHHhcCCCeeeeehhhhh
Confidence 999999999999999 88877655444433
No 105
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.26 E-value=6.2e-06 Score=73.34 Aligned_cols=85 Identities=12% Similarity=0.112 Sum_probs=76.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
..+.+|.-++..|++++|...++.+..+||.++..|+.+|.++..+|+|++|+.+|.+++ ++|++|.....+...+-.+
T Consensus 37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~l 116 (157)
T PRK15363 37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLAC 116 (157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHc
Confidence 678889999999999999999999999999999999999999999999999999999999 8999998777777777666
Q ss_pred HHHHHH
Q 035535 136 KKLEYQ 141 (518)
Q Consensus 136 ~~~~~~ 141 (518)
++....
T Consensus 117 G~~~~A 122 (157)
T PRK15363 117 DNVCYA 122 (157)
T ss_pred CCHHHH
Confidence 665543
No 106
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.25 E-value=5.7e-06 Score=65.17 Aligned_cols=72 Identities=21% Similarity=0.259 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+.+.|..++..|+|++|+..|++++++...... . ......++.|+|.++..+|++++|++.+++|
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~---~--------~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGD---D--------HPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTT---H--------HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC---C--------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999998433221 0 1123458999999999999999999999999
Q ss_pred Hhc
Q 035535 82 LKI 84 (518)
Q Consensus 82 l~l 84 (518)
+++
T Consensus 73 l~i 75 (78)
T PF13424_consen 73 LDI 75 (78)
T ss_dssp HHH
T ss_pred Hhh
Confidence 976
No 107
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.24 E-value=1.6e-05 Score=81.59 Aligned_cols=94 Identities=17% Similarity=0.029 Sum_probs=88.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+-..|..+++.++..+|++.+.+++.++|+.+. +..|+|.++++.|++.+|+..++..+.-+
T Consensus 343 ~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~------------------l~~~~a~all~~g~~~eai~~L~~~~~~~ 404 (484)
T COG4783 343 LELAGDILLEANKAKEAIERLKKALALDPNSPL------------------LQLNLAQALLKGGKPQEAIRILNRYLFND 404 (484)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHHhcCCCccH------------------HHHHHHHHHHhcCChHHHHHHHHHHhhcC
Confidence 345788999999999999999999999999865 89999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
|+++..|..+|++|-.+|+-.+|...+-+.+.
T Consensus 405 p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~ 436 (484)
T COG4783 405 PEDPNGWDLLAQAYAELGNRAEALLARAEGYA 436 (484)
T ss_pred CCCchHHHHHHHHHHHhCchHHHHHHHHHHHH
Confidence 99999999999999999999999999888883
No 108
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.24 E-value=4.5e-06 Score=80.84 Aligned_cols=82 Identities=13% Similarity=0.099 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-+-+++-+|.+.|.|+.|++....||.++|.+.. +|..+|.+|+.+|+|++|++.|.+||++
T Consensus 117 yycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ysk------------------ay~RLG~A~~~~gk~~~A~~aykKaLel 178 (304)
T KOG0553|consen 117 YYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSK------------------AYGRLGLAYLALGKYEEAIEAYKKALEL 178 (304)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHH------------------HHHHHHHHHHccCcHHHHHHHHHhhhcc
Confidence 4567899999999999999999999999999876 9999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccC
Q 035535 85 ESSHFKALLCKGKILLSLNR 104 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~ 104 (518)
||+|....-.+..+-..+++
T Consensus 179 dP~Ne~~K~nL~~Ae~~l~e 198 (304)
T KOG0553|consen 179 DPDNESYKSNLKIAEQKLNE 198 (304)
T ss_pred CCCcHHHHHHHHHHHHHhcC
Confidence 99998555555444444433
No 109
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=98.24 E-value=4.2e-05 Score=63.88 Aligned_cols=103 Identities=17% Similarity=0.231 Sum_probs=79.9
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh----
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK---- 83 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~---- 83 (518)
..|...++.|-|++|...|++|.+....-+ +++..+....-++++.-++.++..+|+|++++...+++|.
T Consensus 14 s~ae~ql~~g~~~eAa~s~r~AM~~srtiP------~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR 87 (144)
T PF12968_consen 14 SDAERQLQDGAYEEAAASCRKAMEVSRTIP------AEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR 87 (144)
T ss_dssp HHHHHHHHHT-HHHHHHHHHHHHHHHTTS-------TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHhccCC------hHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence 456667788999999999999999875544 2444555555677999999999999999999999999985
Q ss_pred ---cCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 ---IESSH----FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 ---l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.+. ..+.+.+|.++..+|+.++|+..|+++-
T Consensus 88 RGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 88 RGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp H--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred ccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 45554 4566899999999999999999999886
No 110
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.24 E-value=7.5e-06 Score=81.35 Aligned_cols=118 Identities=19% Similarity=0.208 Sum_probs=86.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+......+...++++++...+.++....+...+ + .+|..+|.++.+.|++++|+.++++|++++
T Consensus 113 l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~-----------~~~~~~a~~~~~~G~~~~A~~~~~~al~~~ 176 (280)
T PF13429_consen 113 LLSALQLYYRLGDYDEAEELLEKLEELPAAPDS-----A-----------RFWLALAEIYEQLGDPDKALRDYRKALELD 176 (280)
T ss_dssp -----H-HHHTT-HHHHHHHHHHHHH-T---T------H-----------HHHHHHHHHHHHCCHHHHHHHHHHHHHHH-
T ss_pred hhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCC-----H-----------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 344455677888888888888887754321111 1 189999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
|++..++..++.++...|+++++.+.++... ..|+++.....+......+++.+
T Consensus 177 P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~ 231 (280)
T PF13429_consen 177 PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYE 231 (280)
T ss_dssp TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HH
T ss_pred CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999998888 55778877677776666655544
No 111
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=7.5e-07 Score=87.75 Aligned_cols=122 Identities=16% Similarity=0.208 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHH-HHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQ-LSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~-~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++.|+..|+.++|..|...|.++++.....+.......++ ...+.......+.|.+.+-++++.+..|+..+..+
T Consensus 222 ~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~ 301 (372)
T KOG0546|consen 222 EEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEA 301 (372)
T ss_pred hhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccc
Confidence 45678899999999999999999999998764311100111111 12234445568889999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++.++...+++|+++.++..+.++++|++.++.+. ..|++...
T Consensus 302 ~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i 345 (372)
T KOG0546|consen 302 LRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAI 345 (372)
T ss_pred cccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHH
Confidence 99999999999999999999999999999999999 77655433
No 112
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.22 E-value=1.3e-05 Score=63.33 Aligned_cols=76 Identities=24% Similarity=0.336 Sum_probs=65.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+++++|.++...|++++|+..++++++..|.+..+++.+|.++...+++++|++.|++++ ..|.++.....+....
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAY 78 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999 6665553333333333
No 113
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.22 E-value=1.1e-05 Score=91.00 Aligned_cols=118 Identities=11% Similarity=-0.002 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccch---------hhhhhHHHHH-HHHH------HHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITE---------TKQEASQLSK-LKKS------LCLALSNRAEAR 65 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~---------~~~~~~~~~~-~~~~------l~~~~~nra~a~ 65 (518)
.++..+..+...++.|++..|++.|.++++.+|.++.. .....++... ..+. -...+...|.++
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly 112 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAY 112 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHH
Confidence 45667889999999999999999999999999997420 0000000000 0000 011222335566
Q ss_pred HhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 66 SRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 66 ~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
..+|+|++|++.++++++.+|+++.+++.++.++...+++++|++.++++. .+|
T Consensus 113 ~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp 167 (822)
T PRK14574 113 RNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDP 167 (822)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCc
Confidence 666777777777777777777776666666666677777777777776666 444
No 114
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.19 E-value=1.2e-05 Score=75.90 Aligned_cols=110 Identities=15% Similarity=0.135 Sum_probs=92.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
.+-+|..+-..|+|++|++.|+..|+-+|.+.. .+-..-.+.-.+|+.-+|++....-++.-
T Consensus 89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v------------------~~KRKlAilka~GK~l~aIk~ln~YL~~F 150 (289)
T KOG3060|consen 89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTV------------------IRKRKLAILKAQGKNLEAIKELNEYLDKF 150 (289)
T ss_pred HHHHHHHHHHhhchhhHHHHHHHHhccCcchhH------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHHh
Confidence 345678888899999999999999999998865 55555566677889899999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
+.+..||..++.+|..+|+|++|.-||++.+ ..|.+|--...+.+++=
T Consensus 151 ~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Y 199 (289)
T KOG3060|consen 151 MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLY 199 (289)
T ss_pred cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 77777655555555443
No 115
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.18 E-value=7.1e-06 Score=75.03 Aligned_cols=112 Identities=11% Similarity=0.140 Sum_probs=87.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
..+.+|-.++|..+...+...+...+... ...++++.|.++..+|+|++|+..+++++.+.|++
T Consensus 5 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~----------------~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~ 68 (168)
T CHL00033 5 QRNDNFIDKTFTIVADILLRILPTTSGEK----------------EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDP 68 (168)
T ss_pred cccccccccccccchhhhhHhccCCchhH----------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccc
Confidence 45667777888888888866655433321 12389999999999999999999999999997763
Q ss_pred ---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 89 ---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 89 ---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
+.+|+.+|.++..+|++++|+..|++++ ..|........+..+.....
T Consensus 69 ~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~ 120 (168)
T CHL00033 69 YDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG 120 (168)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence 4589999999999999999999999999 77766555555555555433
No 116
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.15 E-value=1.9e-05 Score=81.00 Aligned_cols=94 Identities=13% Similarity=0.058 Sum_probs=80.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..+...|++++|+..+++++.+.|+++. ++..+|.++...|++++|+..+++++..
T Consensus 116 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~------------------~~~~la~i~~~~g~~~eA~~~l~~~l~~ 177 (355)
T cd05804 116 LLGMLAFGLEEAGQYDRAEEAARRALELNPDDAW------------------AVHAVAHVLEMQGRFKEGIAFMESWRDT 177 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcH------------------HHHHHHHHHHHcCCHHHHHHHHHhhhhc
Confidence 3445677888999999999999999999988866 8888999999999999999999999998
Q ss_pred CCCch----HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESSHF----KALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~----ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|..+ ..|+.+|.++...|++++|+..|++++
T Consensus 178 ~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~ 213 (355)
T cd05804 178 WDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHI 213 (355)
T ss_pred cCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 76432 356788999999999999999999987
No 117
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.15 E-value=2.2e-05 Score=74.68 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=85.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
+..+.+...|+-+.+.....++....|.+.. ++.-.+..+++.|+|.+|+..+.++..++|+
T Consensus 71 ~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~------------------ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~ 132 (257)
T COG5010 71 KLATALYLRGDADSSLAVLQKSAIAYPKDRE------------------LLAAQGKNQIRNGNFGEAVSVLRKAARLAPT 132 (257)
T ss_pred HHHHHHHhcccccchHHHHhhhhccCcccHH------------------HHHHHHHHHHHhcchHHHHHHHHHHhccCCC
Confidence 3455555566656666665565555555433 4445889999999999999999999999999
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
++++|.-+|.+|..+|++++|...|.+++ +.|++|....++...+-
T Consensus 133 d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~ 179 (257)
T COG5010 133 DWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLL 179 (257)
T ss_pred ChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence 99999999999999999999999999999 88888876555554443
No 118
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.15 E-value=6.8e-06 Score=87.63 Aligned_cols=114 Identities=16% Similarity=0.125 Sum_probs=93.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
+..|+..+.+++|++|..+++.+++++|-... .|+++|.|.++++++..|.++|.+++.++|
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~------------------~wf~~G~~ALqlek~q~av~aF~rcvtL~P 550 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQLG------------------TWFGLGCAALQLEKEQAAVKAFHRCVTLEP 550 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccchh------------------HHHhccHHHHHHhhhHHHHHHHHHHhhcCC
Confidence 34455566779999999999999999998876 899999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++..+|.+++.+|..+++-.+|...+++|+ -.-++...+++...+..+....
T Consensus 551 d~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 551 DNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred CchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccH
Confidence 999999999999999999999999999999 3434444444444444443333
No 119
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=2.4e-05 Score=78.87 Aligned_cols=95 Identities=23% Similarity=0.265 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+.+.+..+.+.++|.+|+...+++|.++|++.. +++.+|.|++.+|+|+.|+.++++|++
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~K------------------ALyRrG~A~l~~~e~~~A~~df~ka~k 319 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVK------------------ALYRRGQALLALGEYDLARDDFQKALK 319 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchh------------------HHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 34567888899999999999999999999999987 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHH-HHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMA-LDCFKETL 116 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A-~~~~~~al 116 (518)
++|.|-.+...+..+.....++.+. .+.|....
T Consensus 320 ~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~mF 353 (397)
T KOG0543|consen 320 LEPSNKAARAELIKLKQKIREYEEKEKKMYANMF 353 (397)
T ss_pred hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999977777777777777666655 55566665
No 120
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.08 E-value=3.9e-06 Score=81.68 Aligned_cols=155 Identities=18% Similarity=0.260 Sum_probs=107.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---------hhhhHHHHH-HHHHHH------HHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---------KQEASQLSK-LKKSLC------LALSNRAEARS 66 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---------~~~~~~~~~-~~~~l~------~~~~nra~a~~ 66 (518)
+.-+...+.++-..+++++|+++|..+++..|.+.+.- ..+|+-.-. .++.+. .+++|+|.|.+
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~ 369 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCL 369 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHH
Confidence 34455677778888899999999999999888765421 122331111 111211 37999999999
Q ss_pred hccCHHHHHHHHHHHHhcC--C-CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHHh
Q 035535 67 RLRDFDNALRDCEQALKIE--S-SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQS 142 (518)
Q Consensus 67 ~lg~~~~Al~~~~~al~l~--p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~~ 142 (518)
--++|+-++..+++|+..- | .-...||++|.+....|++..|.++|+-++ .+|++.....++..+-.
T Consensus 370 yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~--------- 440 (478)
T KOG1129|consen 370 YAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAA--------- 440 (478)
T ss_pred hhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHh---------
Confidence 9999999999999999874 3 246789999999999999999999999999 77766665555544332
Q ss_pred hhcccchhHhHhhccCCCCccccc
Q 035535 143 RTGALDLSDWILNGLRGKCPELAE 166 (518)
Q Consensus 143 ~~g~~d~~~~~~~~~~~~~p~~~~ 166 (518)
+.|..+-..-+.+......|+..+
T Consensus 441 r~G~i~~Arsll~~A~s~~P~m~E 464 (478)
T KOG1129|consen 441 RSGDILGARSLLNAAKSVMPDMAE 464 (478)
T ss_pred hcCchHHHHHHHHHhhhhCccccc
Confidence 344444333344444444566443
No 121
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.05 E-value=8.8e-05 Score=79.80 Aligned_cols=118 Identities=13% Similarity=0.124 Sum_probs=89.3
Q ss_pred HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhhcccchhhh-----------h---hHHHHH----HHHHH--------H
Q 035535 5 QLRSKATELLLR---EEWKESVQVYTQFIDLCQSQITETKQ-----------E---ASQLSK----LKKSL--------C 55 (518)
Q Consensus 5 ~l~~~Gn~~~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~-----------~---~~~~~~----~~~~l--------~ 55 (518)
.+..+|..++.+ +++..|+.+|++|++++|+++..... + ...+.. ..+.+ .
T Consensus 341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~ 420 (517)
T PRK10153 341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP 420 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence 456677777654 44889999999999999997432110 0 011111 11100 1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
.+|.-+|..+...|++++|...+++|+.++| +..+|..+|.++...|++++|++.|++|+ ++|.+|.
T Consensus 421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 421 RIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 3566678888889999999999999999999 57899999999999999999999999999 8887764
No 122
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=98.03 E-value=2.5e-06 Score=91.21 Aligned_cols=69 Identities=41% Similarity=0.694 Sum_probs=55.7
Q ss_pred ccccccCCCCCCceEEeeCC----EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCC
Q 035535 315 LASFINHSCSPNARRVHVGD----YIIVHASRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFE 383 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~~~~----~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~ 383 (518)
.+.++||||.||+....... .+.++|+|||.+||||+++|.........+.. ....|++.|.|.+|+..
T Consensus 405 ~~r~~nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (480)
T COG2940 405 VARFINHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPSLEDNRELKKLLEKRWGCACGEDRCSHT 478 (480)
T ss_pred ccceeecCCCCCcceecccccccceeeecccccchhhhhhccccccccccchhhhhhhhhhhccccCCCccCCC
Confidence 45799999999999876532 88999999999999999999987654333233 45689999999999864
No 123
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.03 E-value=8.7e-05 Score=72.54 Aligned_cols=102 Identities=17% Similarity=0.274 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
++...-+.|-+..+|++||+.-++...+.+... ...++..|+.+|..++...+.+.|+....+|++.
T Consensus 143 AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-------------~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 143 ALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-------------RVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-------------hhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 445555666666677777776666666655432 2356679999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
||+.+.|-..+|.+....|+|+.|++.++.++ .+|
T Consensus 210 ~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~ 245 (389)
T COG2956 210 DKKCVRASIILGRVELAKGDYQKAVEALERVLEQNP 245 (389)
T ss_pred CccceehhhhhhHHHHhccchHHHHHHHHHHHHhCh
Confidence 99999999999999999999999999999999 554
No 124
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.01 E-value=4.6e-05 Score=64.53 Aligned_cols=66 Identities=17% Similarity=0.172 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.+++.|..+++.|++++|++.++++++.+|++ ..+++.+|.++...|++++|+..|++++ ..|+++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 73 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSP 73 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCC
Confidence 78999999999999999999999999999876 5799999999999999999999999999 677654
No 125
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.01 E-value=4.4e-05 Score=70.07 Aligned_cols=78 Identities=21% Similarity=0.286 Sum_probs=65.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+++++|..+...|++++|+..++++++++|+. ..+++.+|.++..+|+|++|+..|++++ ..|.++.....+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 89999999999999999999999999987753 5689999999999999999999999999 7776654444444444
Q ss_pred HH
Q 035535 133 EK 134 (518)
Q Consensus 133 ~~ 134 (518)
..
T Consensus 117 ~~ 118 (172)
T PRK02603 117 HK 118 (172)
T ss_pred HH
Confidence 33
No 126
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=98.01 E-value=1.3e-05 Score=76.14 Aligned_cols=43 Identities=35% Similarity=0.489 Sum_probs=36.4
Q ss_pred cccccCCCCCCceEEe---eC-CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535 316 ASFINHSCSPNARRVH---VG-DYIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 316 ~s~~NHsC~PN~~~~~---~~-~~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
..+||||-.+|+..-. +| .++++.|.|||.+||||+..|+|..
T Consensus 334 GRLINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRS 380 (392)
T KOG1085|consen 334 GRLINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRS 380 (392)
T ss_pred hhhhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccc
Confidence 4789999999997543 33 3899999999999999999999853
No 127
>KOG1082 consensus Histone H3 (Lys9) methyltransferase SUV39H1/Clr4, required for transcriptional silencing [Chromatin structure and dynamics; Transcription]
Probab=98.00 E-value=1.5e-05 Score=82.06 Aligned_cols=43 Identities=47% Similarity=0.593 Sum_probs=36.6
Q ss_pred cccccCCCCCCceEEee--C------CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535 316 ASFINHSCSPNARRVHV--G------DYIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 316 ~s~~NHsC~PN~~~~~~--~------~~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
+.++||||.||+.+... + -++.+.|+++|++|+|+|+.|+...
T Consensus 273 ~RfinHSC~PN~~~~~v~~~~~~~~~~~i~ffa~~~I~p~~ELT~dYg~~~ 323 (364)
T KOG1082|consen 273 ARFINHSCSPNLLYQAVFQDEFVLLYLRIGFFALRDISPGEELTLDYGKAY 323 (364)
T ss_pred cccccCCCCccceeeeeeecCCccchheeeeeeccccCCCcccchhhcccc
Confidence 57999999999987643 3 1688999999999999999999764
No 128
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.00 E-value=0.00018 Score=64.05 Aligned_cols=113 Identities=19% Similarity=0.187 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---hhhhHHH-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---KQEASQL-SKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---~~~~~~~-~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
+.+...|......++.+.++..+.+++.+.....-++ ..+.... ..+......++..++..+...|++++|+..++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 4455567778888999999999999999876554322 1223322 34555666778888899999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+++.++|.+..+|..+-.+|...|++.+|++.|++..
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 129
>PRK14574 hmsH outer membrane protein; Provisional
Probab=97.98 E-value=4.9e-05 Score=85.81 Aligned_cols=108 Identities=10% Similarity=0.098 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..+...|+|++|++.|+++++.+|+++. ++..++.++...+++++|++.+++++.
T Consensus 103 ~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~------------------~l~gLa~~y~~~~q~~eAl~~l~~l~~ 164 (822)
T PRK14574 103 RGLASAARAYRNEKRWDQALALWQSSLKKDPTNPD------------------LISGMIMTQADAGRGGVVLKQATELAE 164 (822)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHhhcCCHHHHHHHHHHhcc
Confidence 34455677888999999999999999999999876 777889999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
.+|.+... ..++.++..++++.+|++.|++++ ..|++++....+..
T Consensus 165 ~dp~~~~~-l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~ 211 (822)
T PRK14574 165 RDPTVQNY-MTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLE 211 (822)
T ss_pred cCcchHHH-HHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99985544 445666666788877999999999 77766554333333
No 130
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.97 E-value=4.5e-05 Score=78.77 Aligned_cols=91 Identities=18% Similarity=0.192 Sum_probs=70.6
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
..+..++..++-.+|+....++|...|.+.. ++.--|..+++.++|+.|++.+++|+++.|+
T Consensus 205 ~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~------------------LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~ 266 (395)
T PF09295_consen 205 LLARVYLLMNEEVEAIRLLNEALKENPQDSE------------------LLNLQAEFLLSKKKYELALEIAKKAVELSPS 266 (395)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCch
Confidence 3556666667777788888888877776654 6777788888888888888888888888888
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..++|+.++.+|..+|+|++|+..+..+-
T Consensus 267 ~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 267 EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 88888888888888888888887776543
No 131
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.95 E-value=4e-05 Score=79.79 Aligned_cols=114 Identities=16% Similarity=0.224 Sum_probs=90.2
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc----
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI---- 84 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l---- 84 (518)
.|.++.+.++++-|-..|.+|+.++|.++- .+.-+|.+.+..+.|.+|+.++..++..
T Consensus 386 lgmey~~t~n~kLAe~Ff~~A~ai~P~Dpl------------------v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~ 447 (611)
T KOG1173|consen 386 LGMEYMRTNNLKLAEKFFKQALAIAPSDPL------------------VLHELGVVAYTYEEYPEALKYFQKALEVIKSV 447 (611)
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcCCCcch------------------hhhhhhheeehHhhhHHHHHHHHHHHHHhhhc
Confidence 466666677777777777777777777765 7888999999999999999999999933
Q ss_pred C---CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 85 E---SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 85 ~---p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+ +.+...+.++|.++..+++|++|+.+|+++| ..|.++.....+.-.....+.+..
T Consensus 448 ~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~ 507 (611)
T KOG1173|consen 448 LNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDK 507 (611)
T ss_pred cccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHH
Confidence 1 2356678999999999999999999999999 888888777666666655555543
No 132
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.95 E-value=5.4e-05 Score=83.20 Aligned_cols=118 Identities=11% Similarity=0.185 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+...+|.+|-.|+|..+...+..|+...-..+ +.+-.++++|.+|..+|+|++|..+|.++
T Consensus 269 nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~---------------~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s 333 (1018)
T KOG2002|consen 269 NPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKS---------------IKAESFYQLGRSYHAQGDFEKAFKYYMES 333 (1018)
T ss_pred CcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhH---------------HHHHHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 345677788999999999999999999987653222 12337999999999999999999999999
Q ss_pred HhcCCCc-hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 82 LKIESSH-FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 82 l~l~p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
++.+|++ .-+++.+|+.+...|+++.|..+|++.+ ..|++......+..+...
T Consensus 334 ~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 334 LKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAH 388 (1018)
T ss_pred HccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHh
Confidence 9999988 7889999999999999999999999999 788777665555444433
No 133
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=97.95 E-value=0.00012 Score=80.01 Aligned_cols=113 Identities=16% Similarity=0.170 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.|+..+...-+.|++.+|+-+|++||...|.+.. .+++++..|.++|++..|+.-+.+++.
T Consensus 208 e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~~------------------~~~ers~L~~~~G~~~~Am~~f~~l~~ 269 (895)
T KOG2076|consen 208 ELWKRLADLSEQLGNINQARYCYSRAIQANPSNWE------------------LIYERSSLYQKTGDLKRAMETFLQLLQ 269 (895)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcchH------------------HHHHHHHHHHHhChHHHHHHHHHHHHh
Confidence 67889999999999999999999999999999876 899999999999999999999999999
Q ss_pred cCC----CchHHH-HHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 035535 84 IES----SHFKAL-LCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEK 134 (518)
Q Consensus 84 l~p----~~~ka~-~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~ 134 (518)
++| ...... ++.+..+...++-+.|++.+..++....+......+..+.+-
T Consensus 270 ~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael 325 (895)
T KOG2076|consen 270 LDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAEL 325 (895)
T ss_pred hCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHH
Confidence 999 223333 455888999999999999999998644444455555544433
No 134
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.95 E-value=0.00013 Score=77.48 Aligned_cols=104 Identities=15% Similarity=0.253 Sum_probs=88.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+.|..|.+.|+|++|..++.+|+++...... .+.. .+...+.|.+.++..+++|++|+..+.+++
T Consensus 283 a~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~---~~~~-------~v~~~l~~~~~~~~~~~~~Eea~~l~q~al 352 (508)
T KOG1840|consen 283 AATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLG---ASHP-------EVAAQLSELAAILQSMNEYEEAKKLLQKAL 352 (508)
T ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhc---cChH-------HHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 567889999999999999999999999998765221 1111 234489999999999999999999999999
Q ss_pred hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++ +|.-++.+-++|.+|+.+|+|++|.+.|++|+
T Consensus 353 ~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai 394 (508)
T KOG1840|consen 353 KIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAI 394 (508)
T ss_pred HHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 86 23457889999999999999999999999999
No 135
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.94 E-value=4.7e-05 Score=83.67 Aligned_cols=124 Identities=11% Similarity=0.094 Sum_probs=90.3
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhh---------hhhH---HH-HHHHHHH---HHHHHHHHHHHHhccCHHHHHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETK---------QEAS---QL-SKLKKSL---CLALSNRAEARSRLRDFDNALRDC 78 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~---~~-~~~~~~l---~~~~~nra~a~~~lg~~~~Al~~~ 78 (518)
.++.++.|++.|.++|+.+|.+..... .+.. ++ .+.+... +.+|.|+|.||+.+|+|..|++.|
T Consensus 624 ~kk~~~KAlq~y~kvL~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmY 703 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVLRNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMY 703 (1018)
T ss_pred HHHHHHHHHHHHHHHHhcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHH
Confidence 455667777777777777665432100 0000 00 1111111 248999999999999999999999
Q ss_pred HHHHhcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 79 EQALKIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 79 ~~al~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
+.+++.. .+++..+.++|++++..|.|.+|.+.+.+|+ ..|.++....++..++.+....
T Consensus 704 e~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s 766 (1018)
T KOG2002|consen 704 ENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAES 766 (1018)
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHH
Confidence 9999863 4678999999999999999999999999999 8898888777777777665443
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.93 E-value=0.00016 Score=64.35 Aligned_cols=98 Identities=23% Similarity=0.167 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..........+..+++..+...+.+.+.-.|+.+. -..+.+.+|.+++..|+|++|+..++.++
T Consensus 11 a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~y---------------a~~A~l~lA~~~~~~g~~~~A~~~l~~~~ 75 (145)
T PF09976_consen 11 ASALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPY---------------AALAALQLAKAAYEQGDYDEAKAALEKAL 75 (145)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344556666677788999988889988888777632 12388899999999999999999999999
Q ss_pred hcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 83 KIESSH---FKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 83 ~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
...|+. ..+.+++|.+++..|+|++|+..++..
T Consensus 76 ~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 76 ANAPDPELKPLARLRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred hhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 987654 568999999999999999999999763
No 137
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.93 E-value=3.8e-05 Score=82.10 Aligned_cols=103 Identities=17% Similarity=0.184 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+.|...|..+.+.++++.|.+.|++++.++|++.. +|.|++.+|+++++-.+|...+.+|+
T Consensus 519 ~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~e------------------aWnNls~ayi~~~~k~ra~~~l~EAl 580 (777)
T KOG1128|consen 519 LGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAE------------------AWNNLSTAYIRLKKKKRAFRKLKEAL 580 (777)
T ss_pred hhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchh------------------hhhhhhHHHHHHhhhHHHHHHHHHHh
Confidence 467899999999999999999999999999999987 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG 123 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~ 123 (518)
+.+-.+++.|-+--.+....|.+++|++.|.+.+..+.+..
T Consensus 581 Kcn~~~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~ 621 (777)
T KOG1128|consen 581 KCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYK 621 (777)
T ss_pred hcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcc
Confidence 99999999999999999999999999999999996554444
No 138
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.90 E-value=7.3e-05 Score=79.34 Aligned_cols=103 Identities=16% Similarity=0.151 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++.+|+|+.|+..+.+|++..-.... . ....+.....++|..|..+++|.+|+..|++|+.
T Consensus 200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G--~--------~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~ 269 (508)
T KOG1840|consen 200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSG--L--------KHLVVASMLNILALVYRSLGKYDEAVNLYEEALT 269 (508)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccC--c--------cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45667899999999999999999999998322111 0 0011223555799999999999999999999997
Q ss_pred c--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 I--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+ +|.-+-++.++|.+|+..|+|++|..++++|+
T Consensus 270 i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al 310 (508)
T KOG1840|consen 270 IREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERAL 310 (508)
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHH
Confidence 6 45557789999999999999999999999999
No 139
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.89 E-value=5.2e-05 Score=69.26 Aligned_cols=68 Identities=24% Similarity=0.429 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-+-++|.++++.+.|+.||...++||++.|.+.. ++..||.+|-++..|++|++||.+.+++
T Consensus 136 ly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~k------------------Al~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 136 LYSNRAAALIKLRKWESAIEDCSKAIELNPTYEK------------------ALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHH------------------HHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 3567889999999999999999999999998765 8889999999999999999999999999
Q ss_pred CCCchH
Q 035535 85 ESSHFK 90 (518)
Q Consensus 85 ~p~~~k 90 (518)
+|....
T Consensus 198 dPs~~e 203 (271)
T KOG4234|consen 198 DPSRRE 203 (271)
T ss_pred CcchHH
Confidence 997643
No 140
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=97.88 E-value=0.00013 Score=74.87 Aligned_cols=118 Identities=11% Similarity=0.111 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh------------hhhHHHHH-------HHHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK------------QEASQLSK-------LKKSLCLALSNRAE 63 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~------------~~~~~~~~-------~~~~l~~~~~nra~ 63 (518)
.+....+|..++..|++++|+..+.++++..|.+...-. .......+ .......++.++|.
T Consensus 43 ~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~ 122 (355)
T cd05804 43 RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAF 122 (355)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHH
Confidence 345667889999999999999999999999988753110 00000000 00011235667888
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 64 ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 64 a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
++...|++++|+..++++++++|+++.++..+|.+++..|++++|+..+++++ ..|.
T Consensus 123 ~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~ 180 (355)
T cd05804 123 GLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC 180 (355)
T ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC
Confidence 99999999999999999999999999999999999999999999999999998 5553
No 141
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.87 E-value=0.00025 Score=64.28 Aligned_cols=118 Identities=18% Similarity=0.186 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLC-QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+.-...|+.+...|++.+|..+|.+++.-- ..++. .+..+|.+.+.++++.+|...++..
T Consensus 89 vqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a------------------~lLglA~Aqfa~~~~A~a~~tLe~l 150 (251)
T COG4700 89 VQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAA------------------MLLGLAQAQFAIQEFAAAQQTLEDL 150 (251)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHH------------------HHHHHHHHHHhhccHHHHHHHHHHH
Confidence 3455678999999999999999999998632 22222 7889999999999999999999999
Q ss_pred HhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESS--HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
.+.+|. .+....-.|++|..+|+|.+|...|+.++ -.| .+...-...+.+.+..+..
T Consensus 151 ~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp-g~~ar~~Y~e~La~qgr~~ 210 (251)
T COG4700 151 MEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP-GPQARIYYAEMLAKQGRLR 210 (251)
T ss_pred hhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC-CHHHHHHHHHHHHHhcchh
Confidence 999985 46778888999999999999999999999 444 3444445556666555443
No 142
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.84 E-value=0.00022 Score=76.40 Aligned_cols=85 Identities=18% Similarity=0.220 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
..+++-+|+.|-.+|++++|++.+++||+.+|+.+..|+.+|++|-..|++.+|.++++.|. +++.|.-......+.+-
T Consensus 194 lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L 273 (517)
T PF12569_consen 194 LWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL 273 (517)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH
Confidence 34678899999999999999999999999999999999999999999999999999999999 77554433333333333
Q ss_pred HHHHHH
Q 035535 134 KSKKLE 139 (518)
Q Consensus 134 ~~~~~~ 139 (518)
++.+.+
T Consensus 274 Ra~~~e 279 (517)
T PF12569_consen 274 RAGRIE 279 (517)
T ss_pred HCCCHH
Confidence 333333
No 143
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.84 E-value=0.00016 Score=76.02 Aligned_cols=121 Identities=12% Similarity=0.042 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.......|..+...|++++|+..+++++...|++... ....-+....+..++..++++.+++++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~----------------~~~~l~~~~~l~~~~~~~~~~~~e~~l 326 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAI----------------SLPLCLPIPRLKPEDNEKLEKLIEKQA 326 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccc----------------hhHHHHHhhhcCCCChHHHHHHHHHHH
Confidence 4556678899999999999999999999999987530 011223344455688999999999999
Q ss_pred hcCCCch--HHHHHHHHHHHhccChHHHHHHHHH--HH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 83 KIESSHF--KALLCKGKILLSLNRYSMALDCFKE--TL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 83 ~l~p~~~--ka~~~~g~al~~lg~~~~A~~~~~~--al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+.+|+++ ..+..+|.+++..|+|++|.++|++ ++ ..|++. ....+..++.+.++.++
T Consensus 327 k~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~-~~~~La~ll~~~g~~~~ 388 (409)
T TIGR00540 327 KNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDAN-DLAMAADAFDQAGDKAE 388 (409)
T ss_pred HhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHH-HHHHHHHHHHHcCCHHH
Confidence 9999999 8888999999999999999999994 65 455333 34466666665555443
No 144
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.83 E-value=0.00048 Score=68.59 Aligned_cols=120 Identities=18% Similarity=0.194 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+..+.+.|..+... |++++|+++|.+|+++...... ......++.+.|.++.++|+|++|++.++++
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~------------~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGS------------PHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-------------HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC------------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677888888888 9999999999999998765432 1122338889999999999999999999999
Q ss_pred HhcC---C---CchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH--HHHHHHHHH
Q 035535 82 LKIE---S---SHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL--ETVNGFLEK 134 (518)
Q Consensus 82 l~l~---p---~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~--~~l~~~l~~ 134 (518)
.... + .+++ .++..+.+++..|++-.|.+.|++.. .+|...... ..+..+++.
T Consensus 182 ~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 182 AKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 8752 1 1244 45688889999999999999999999 778766552 334444443
No 145
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.83 E-value=1.8e-05 Score=51.79 Aligned_cols=33 Identities=15% Similarity=0.280 Sum_probs=31.2
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccChHHHHH
Q 035535 78 CEQALKIESSHFKALLCKGKILLSLNRYSMALD 110 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~ 110 (518)
|++||+++|+++.+|+++|.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 689999999999999999999999999999963
No 146
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=97.81 E-value=0.00026 Score=71.34 Aligned_cols=128 Identities=15% Similarity=0.212 Sum_probs=95.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
....|...|++++|..|+..|.-||+++..-.....+.....++...+-..+--.+..||+++++.+.|+....+.|-++
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln 258 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN 258 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence 34567788999999999999999999986543322211112223333444466689999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
|.++.-+++.|.++..+.+|.+|.+.+--+. ..--...+.+.+..++.
T Consensus 259 P~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~g~~~q~~S~lIk 307 (569)
T PF15015_consen 259 PSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLSGGSEQRISKLIK 307 (569)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHhHHHHHH
Confidence 9999999999999999999999999988776 32112233344554443
No 147
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.80 E-value=0.00013 Score=77.18 Aligned_cols=116 Identities=13% Similarity=0.193 Sum_probs=100.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+..+....|..++|...+....+.|...|.+++ .+.-.|..+..+|+-++|...+..++..
T Consensus 9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHge------------------slAmkGL~L~~lg~~~ea~~~vr~glr~ 70 (700)
T KOG1156|consen 9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGE------------------SLAMKGLTLNCLGKKEEAYELVRLGLRN 70 (700)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccch------------------hHHhccchhhcccchHHHHHHHHHHhcc
Confidence 4566778889999999999999999999999987 7888899999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
|+...-.|.-+|.++..-.+|++|+.||+.|+ ..|+|.+....+.-+..+++.+
T Consensus 71 d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~ 125 (700)
T KOG1156|consen 71 DLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY 125 (700)
T ss_pred CcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 7777666555555544444443
No 148
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=97.79 E-value=0.00035 Score=73.43 Aligned_cols=117 Identities=17% Similarity=0.162 Sum_probs=94.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+.....+|-..+..|+|+.|.....++.+..|+... .+.-.|.+..++|+++.|.+++.++.
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~------------------~~llaA~aa~~~g~~~~A~~~l~~a~ 145 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVL------------------NLIKAAEAAQQRGDEARANQHLEEAA 145 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 445567888899999999999999999988776543 67788999999999999999999999
Q ss_pred hcCCCch-HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535 83 KIESSHF-KALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 83 ~l~p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~ 137 (518)
+..|++. ......+.++...|++++|.+.+++.+ ..|+++.....+..+....++
T Consensus 146 ~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d 202 (409)
T TIGR00540 146 ELAGNDNILVEIARTRILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGA 202 (409)
T ss_pred HhCCcCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhh
Confidence 9999875 455557999999999999999999999 778777554444444443333
No 149
>PRK11906 transcriptional regulator; Provisional
Probab=97.78 E-value=0.00023 Score=73.52 Aligned_cols=102 Identities=13% Similarity=0.040 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhhh---cHHHHHHHHHHHH---HHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc---------c
Q 035535 5 QLRSKATELLLRE---EWKESVQVYTQFI---DLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL---------R 69 (518)
Q Consensus 5 ~l~~~Gn~~~~~g---~~~~Ai~~y~~Al---~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l---------g 69 (518)
.+..+|...+.++ ..+.|+.++.+|+ .++|..+. +|.-+|.||+.. .
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~------------------a~~~lA~~h~~~~~~g~~~~~~ 318 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTE------------------CYCLLAECHMSLALHGKSELEL 318 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHH------------------HHHHHHHHHHHHHHhcCCCchH
Confidence 3455666665443 5678999999999 88888766 888888887765 2
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.-.+|++.+++|+++||.++.+++.+|.++...++++.|...|++|+ +.|+.+..
T Consensus 319 ~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~ 374 (458)
T PRK11906 319 AAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASL 374 (458)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHH
Confidence 45789999999999999999999999999999999999999999999 77765544
No 150
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.78 E-value=0.00025 Score=79.78 Aligned_cols=114 Identities=13% Similarity=0.122 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hh--------------hHHHHHHHHHHH---
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QE--------------ASQLSKLKKSLC--- 55 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~--------------~~~~~~~~~~l~--- 55 (518)
+.++|....+.+...+++++|++....+++..|+...--. .. .+..-..-..++
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i 109 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKI 109 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHH
Confidence 4567778888888999999999999999998887543100 00 000000111122
Q ss_pred -------HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 56 -------LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 56 -------~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+++.+|.||-++|++++|...+++++++||+|+.++.++|..|... +.++|++.+.+|+
T Consensus 110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV 176 (906)
T PRK14720 110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAI 176 (906)
T ss_pred HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHH
Confidence 57888889999999999999999999999999999999999888888 8999999998888
No 151
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.75 E-value=0.00069 Score=64.83 Aligned_cols=104 Identities=16% Similarity=0.137 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..|.++|...++.|+|.+|+..|.......|..+.. + .+...++.++++.++|++|+..+++-
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~----~-----------qa~l~l~yA~Yk~~~y~~A~~~~drF 97 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYS----E-----------QAQLDLAYAYYKNGEYDLALAYIDRF 97 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc----H-----------HHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 36789999999999999999999999999888876541 1 17889999999999999999999999
Q ss_pred HhcCCCchH---HHHHHHHHHHhcc--------ChHHHHHHHHHHH-hccc
Q 035535 82 LKIESSHFK---ALLCKGKILLSLN--------RYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 82 l~l~p~~~k---a~~~~g~al~~lg--------~~~~A~~~~~~al-~~p~ 120 (518)
+.+.|+++. ++|-+|.+++..- --.+|+..|+..+ .-|+
T Consensus 98 i~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 98 IRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred HHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 999998765 6888899877432 2347788888888 6664
No 152
>PRK11906 transcriptional regulator; Provisional
Probab=97.75 E-value=0.00015 Score=74.92 Aligned_cols=86 Identities=9% Similarity=0.019 Sum_probs=80.9
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
..+-.+|..+-.+|++++|.++. ++..+|.++.-.++++.|+..+++|+.++|+.+.+||..
T Consensus 317 ~~~~~~a~~~A~rAveld~~Da~------------------a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~ 378 (458)
T PRK11906 317 ELAAQKALELLDYVSDITTVDGK------------------ILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYR 378 (458)
T ss_pred hHHHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHH
Confidence 44567899999999999999987 999999999999999999999999999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHHH-hcc
Q 035535 96 GKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 96 g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
|.++...|+.++|.+.+++++ +.|
T Consensus 379 ~~~~~~~G~~~~a~~~i~~alrLsP 403 (458)
T PRK11906 379 ALVHFHNEKIEEARICIDKSLQLEP 403 (458)
T ss_pred HHHHHHcCCHHHHHHHHHHHhccCc
Confidence 999999999999999999999 776
No 153
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.73 E-value=5.1e-05 Score=49.40 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
+|+++|.+++.+|+|++|+.++++|++++|++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 78888888888888888888888888888864
No 154
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.00038 Score=70.10 Aligned_cols=99 Identities=14% Similarity=0.087 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH----------
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF---------- 71 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~---------- 71 (518)
+.+.+..+|+.+...|+.++|+-.|+.|+.+.|.... .|-.+-.+|+..|++
T Consensus 333 ~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~------------------~Y~GL~hsYLA~~~~kEA~~~An~~ 394 (564)
T KOG1174|consen 333 NHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLE------------------IYRGLFHSYLAQKRFKEANALANWT 394 (564)
T ss_pred cchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHH------------------HHHHHHHHHHhhchHHHHHHHHHHH
Confidence 4678889999999999999999999999999987654 333333333333333
Q ss_pred --------------------------HHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 72 --------------------------DNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 72 --------------------------~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
++|...++++|.++|.+.+|-..+|..+...|++++++..+++++.+
T Consensus 395 ~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~ 467 (564)
T KOG1174|consen 395 IRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII 467 (564)
T ss_pred HHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh
Confidence 56777777777888888888888888888888888888888888833
No 155
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.73 E-value=0.0001 Score=58.95 Aligned_cols=60 Identities=17% Similarity=0.221 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
...+...|..+|+.|+|++|+..+++ +..+|.+.. ..+-+|.|++++|+|++|++.+++|
T Consensus 25 ~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~------------------~~~l~a~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 25 SAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPD------------------IHYLLARCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHH------------------HHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHhcC
Confidence 34567789999999999999999999 777776544 6667799999999999999999875
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.72 E-value=0.00027 Score=76.13 Aligned_cols=119 Identities=13% Similarity=0.092 Sum_probs=104.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.|...+..+.+.++-++|..+..+|-.++|..+. .|+.+|.++...|++.+|.+.|..|+.+
T Consensus 652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~------------------~~~~~G~~~~~~~~~~EA~~af~~Al~l 713 (799)
T KOG4162|consen 652 LWLLAADLFLLSGNDDEARSCLLEASKIDPLSAS------------------VYYLRGLLLEVKGQLEEAKEAFLVALAL 713 (799)
T ss_pred HHHHHHHHHHhcCCchHHHHHHHHHHhcchhhHH------------------HHHHhhHHHHHHHhhHHHHHHHHHHHhc
Confidence 3445566666677778888899999888887766 8999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHH--HHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALD--CFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~--~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
||+++.+...+|.++...|+-..|.. .+..++ .+|.+++.+..+....++.+..++.
T Consensus 714 dP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~A 773 (799)
T KOG4162|consen 714 DPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQA 773 (799)
T ss_pred CCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHH
Confidence 99999999999999999999998888 899999 9999999999999999888777644
No 157
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=97.72 E-value=3.4e-05 Score=84.88 Aligned_cols=41 Identities=44% Similarity=0.684 Sum_probs=34.9
Q ss_pred cccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCC
Q 035535 316 ASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFD 356 (518)
Q Consensus 316 ~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~ 356 (518)
+.++||+|.|||... .+|. ++.++|+|||++|||||..|-.
T Consensus 1251 ~RfinhscKPNc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~ 1295 (1306)
T KOG1083|consen 1251 ARFINHSCKPNCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNF 1295 (1306)
T ss_pred ccccccccCCCCccccccccceeeeeeeecCCCCCCceEEEeccc
Confidence 578899999999754 4454 8999999999999999999854
No 158
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.65 E-value=0.00075 Score=70.69 Aligned_cols=115 Identities=16% Similarity=0.120 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+......|-..+..|+|++|.....++-...+. +. +.+...+.+-.+.|+++.|..++.+|.
T Consensus 84 ~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~-----------------l~~llaA~aA~~~g~~~~A~~~l~~A~ 145 (398)
T PRK10747 84 ARKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PV-----------------VNYLLAAEAAQQRGDEARANQHLERAA 145 (398)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hH-----------------HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344566788888889999998555554332111 11 144555666699999999999999999
Q ss_pred hcCCCchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 83 KIESSHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 83 ~l~p~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
+.+|++.- .....+..+...|++++|++.+++.+ ..|+++.....+...+.+.
T Consensus 146 ~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~ 200 (398)
T PRK10747 146 ELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRT 200 (398)
T ss_pred hcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 99998854 34566999999999999999999999 7777765555454444433
No 159
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.63 E-value=0.00011 Score=51.16 Aligned_cols=41 Identities=27% Similarity=0.177 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGK 97 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~ 97 (518)
++..+|.+|..+|++++|++.++++++.+|+++.+++.+|.
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 78899999999999999999999999999999999998875
No 160
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.63 E-value=0.00017 Score=70.52 Aligned_cols=104 Identities=17% Similarity=0.171 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+++.+.-....|.+-.+...|+..|.+.++..|.+.. .+...|.++..++++++|++.++.+
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT------------------~l~g~ARi~eam~~~~~a~~lYk~v 316 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVT------------------YLLGQARIHEAMEQQEDALQLYKLV 316 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhh------------------hhhhhHHHHHHHHhHHHHHHHHHHH
Confidence 3566677888899999999999999999999999876 8889999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++.+|.|+++.-..|.-|+--++.+.|+.+|++.+ .--.+|+
T Consensus 317 lk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~spe 359 (478)
T KOG1129|consen 317 LKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPE 359 (478)
T ss_pred HhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChH
Confidence 99999999999999999999999999999999999 4433443
No 161
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.59 E-value=0.0012 Score=64.71 Aligned_cols=98 Identities=11% Similarity=0.084 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++-+-+.+..+....+.+.|.....+|+..+|+... +-.-+|.+.+..|+|.+|++.++.++
T Consensus 180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvR------------------Asi~lG~v~~~~g~y~~AV~~~e~v~ 241 (389)
T COG2956 180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVR------------------ASIILGRVELAKGDYQKAVEALERVL 241 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCcccee------------------hhhhhhHHHHhccchHHHHHHHHHHH
Confidence 345567788888999999999999999999999876 77788999999999999999999999
Q ss_pred hcCCCc-hHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 83 KIESSH-FKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 83 ~l~p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
+.||.. +...-.+..||..+|+.++.+..+.++...
T Consensus 242 eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~ 278 (389)
T COG2956 242 EQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET 278 (389)
T ss_pred HhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc
Confidence 999987 567888999999999999999999999943
No 162
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.00064 Score=58.30 Aligned_cols=66 Identities=29% Similarity=0.238 Sum_probs=59.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+++++|-++-.+|+.++|+..|++++....+ -..++..+|.++..+|++++|+..+++++ ..|+++
T Consensus 3 ~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~ 72 (120)
T PF12688_consen 3 ALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDE 72 (120)
T ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc
Confidence 7899999999999999999999999997543 36799999999999999999999999999 667533
No 163
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.53 E-value=0.0011 Score=70.46 Aligned_cols=93 Identities=16% Similarity=0.245 Sum_probs=71.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
|...|-.+-..++|.+||.+|+.|+.+.|++.. +|.-+|....++++|+.....-.+.++++
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~q------------------ilrDlslLQ~QmRd~~~~~~tr~~LLql~ 139 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKIEKDNLQ------------------ILRDLSLLQIQMRDYEGYLETRNQLLQLR 139 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcHH------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhh
Confidence 455666666777788888888888888777765 77777777888888888777777778888
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
|.+-..|+..+.++..+|+|..|...++...
T Consensus 140 ~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 140 PSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8777778888888888888888877777666
No 164
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.51 E-value=0.0015 Score=65.06 Aligned_cols=97 Identities=19% Similarity=0.281 Sum_probs=71.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHHHhcC--
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQALKIE-- 85 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~al~l~-- 85 (518)
.+-..++..++.+|+.+|++|+.+.-.... ....+.++.++|.+|... |++++|++.+++|+++-
T Consensus 80 ~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~------------~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~ 147 (282)
T PF14938_consen 80 EAANCYKKGDPDEAIECYEKAIEIYREAGR------------FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQ 147 (282)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHCT-------------HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhCHHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 344445566888888888888887644332 112234889999999998 99999999999999872
Q ss_pred -C---CchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 86 -S---SHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 86 -p---~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
. .....+...|.++..+|+|++|++.|++...
T Consensus 148 e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~ 183 (282)
T PF14938_consen 148 EGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAK 183 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred CCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 1 1245677899999999999999999999883
No 165
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.50 E-value=0.00024 Score=78.36 Aligned_cols=95 Identities=12% Similarity=0.077 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..|..+|-.+.+.+++.+|+..++.|++.+|.+.. +|..+|.+|...|+|..|++.+++|..
T Consensus 563 ~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n------------------~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 563 ENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYN------------------LWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhhhccccccCccchhhHHHHHHHHhcCCchhHH------------------HHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 34556777777788888888888888888887765 788888888888888888888888888
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++|.+.-+.|..+.....+|+|.+|+..+...+
T Consensus 625 LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 625 LRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred cCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 888888788888888888888888888877766
No 166
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=97.47 E-value=0.001 Score=69.63 Aligned_cols=114 Identities=13% Similarity=0.077 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
......+..+...|+.++|.....+++...| ++. +..- ...+..++++++++.+++.++
T Consensus 264 ~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~-~~~------------------l~~l--~~~l~~~~~~~al~~~e~~lk 322 (398)
T PRK10747 264 ALQVAMAEHLIECDDHDTAQQIILDGLKRQY-DER------------------LVLL--IPRLKTNNPEQLEKVLRQQIK 322 (398)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CHH------------------HHHH--HhhccCCChHHHHHHHHHHHh
Confidence 3455668889999999999999999998433 322 2222 223345999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
.+|+++..++.+|.++...++|++|.+.|++++ ..|+++ ....+..++++..+.+
T Consensus 323 ~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~-~~~~La~~~~~~g~~~ 378 (398)
T PRK10747 323 QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY-DYAWLADALDRLHKPE 378 (398)
T ss_pred hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH-HHHHHHHHHHHcCCHH
Confidence 999999999999999999999999999999999 666443 2245666665554443
No 167
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.47 E-value=0.0035 Score=59.69 Aligned_cols=95 Identities=17% Similarity=0.178 Sum_probs=84.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
+.+--.+-.+|+--+||+....-++..+++++ +|..+|..|+.+|+|++|.-.+++.+-++|
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D~E------------------AW~eLaeiY~~~~~f~kA~fClEE~ll~~P 185 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMNDQE------------------AWHELAEIYLSEGDFEKAAFCLEELLLIQP 185 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHH------------------HHHHHHHHHHhHhHHHHHHHHHHHHHHcCC
Confidence 33444555678888999999999999999987 999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhcc---ChHHHHHHHHHHH-hcc
Q 035535 87 SHFKALLCKGKILLSLN---RYSMALDCFKETL-VDA 119 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg---~~~~A~~~~~~al-~~p 119 (518)
.++-.+-|+|.+++-+| +++-|..+|.+++ ..|
T Consensus 186 ~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~ 222 (289)
T KOG3060|consen 186 FNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNP 222 (289)
T ss_pred CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhCh
Confidence 99999999999999776 6788999999999 554
No 168
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.45 E-value=0.00021 Score=46.40 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
+++|+++|.++..+|+|++|+.+|++++ .+|+
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 4789999999999999999999999999 7764
No 169
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.44 E-value=9.4e-05 Score=48.34 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=31.4
Q ss_pred HHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535 25 VYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76 (518)
Q Consensus 25 ~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~ 76 (518)
+|++||+++|+++. +|+|+|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n~~------------------a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAE------------------AYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHH------------------HHHHHHHHHHHCcCHHhhcC
Confidence 48999999999987 99999999999999999863
No 170
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.42 E-value=0.001 Score=65.31 Aligned_cols=72 Identities=14% Similarity=0.046 Sum_probs=63.6
Q ss_pred HHHHHHHHH-HhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535 57 ALSNRAEAR-SRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV 128 (518)
Q Consensus 57 ~~~nra~a~-~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l 128 (518)
..++.|..+ ++.|+|++|+..++..++..|++ +.++|.+|.+|+..|+|++|+..|++++ ..|+++.....+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl 220 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAM 220 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHH
Confidence 678888887 66799999999999999999988 5799999999999999999999999999 778776654444
No 171
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.40 E-value=0.00072 Score=76.14 Aligned_cols=52 Identities=10% Similarity=0.110 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
..++.|+|..|... +.++|++.+.+|+.. +..-++|..+.+.+.+.+ ..|.+
T Consensus 150 ~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~--------------~i~~kq~~~~~e~W~k~~~~~~~d 202 (906)
T PRK14720 150 PEIVKKLATSYEEE-DKEKAITYLKKAIYR--------------FIKKKQYVGIEEIWSKLVHYNSDD 202 (906)
T ss_pred HHHHHHHHHHHHHh-hHHHHHHHHHHHHHH--------------HHhhhcchHHHHHHHHHHhcCccc
Confidence 46899999999999 999999999999877 556668888888888887 55543
No 172
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.36 E-value=0.00035 Score=45.19 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=23.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
+++++|.+++++|+|++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 67777777777777777777777777777764
No 173
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.0021 Score=62.81 Aligned_cols=90 Identities=14% Similarity=0.123 Sum_probs=78.4
Q ss_pred hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535 17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG 96 (518)
Q Consensus 17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g 96 (518)
.+.++-+...+.-|..+|++.. -|.-+|.+|+.+|++..|+..|.+|+++.|+++..+.-.|
T Consensus 136 ~~~~~l~a~Le~~L~~nP~d~e------------------gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~a 197 (287)
T COG4235 136 QEMEALIARLETHLQQNPGDAE------------------GWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLA 197 (287)
T ss_pred ccHHHHHHHHHHHHHhCCCCch------------------hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3466778888888999999887 8999999999999999999999999999999999999999
Q ss_pred HHHHhcc---ChHHHHHHHHHHH-hccccCCc
Q 035535 97 KILLSLN---RYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 97 ~al~~lg---~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.+++... .-.+|.+.|++++ .+|++...
T Consensus 198 eaL~~~a~~~~ta~a~~ll~~al~~D~~~ira 229 (287)
T COG4235 198 EALYYQAGQQMTAKARALLRQALALDPANIRA 229 (287)
T ss_pred HHHHHhcCCcccHHHHHHHHHHHhcCCccHHH
Confidence 9998764 4568999999999 78765543
No 174
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.35 E-value=0.0021 Score=66.53 Aligned_cols=106 Identities=16% Similarity=0.186 Sum_probs=93.4
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC 94 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~ 94 (518)
..++++.|++.+++....+|. +..-+|.+++..++..+|++...++++.+|.+...+.-
T Consensus 181 ~t~~~~~ai~lle~L~~~~pe---------------------v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~ 239 (395)
T PF09295_consen 181 LTQRYDEAIELLEKLRERDPE---------------------VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNL 239 (395)
T ss_pred hcccHHHHHHHHHHHHhcCCc---------------------HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 457899999999998887765 44457888889999999999999999999999999999
Q ss_pred HHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 95 KGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
.+..+...++|+.|+...++++ ..|++-..+..+.+.+...++.+..
T Consensus 240 Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~A 287 (395)
T PF09295_consen 240 QAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENA 287 (395)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHH
Confidence 9999999999999999999999 8888888888888888777776654
No 175
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.32 E-value=0.0021 Score=64.96 Aligned_cols=103 Identities=13% Similarity=0.045 Sum_probs=79.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.|.-.|..+|..++|+.|+.+-.++|+.+|++.. +|.-.|.++..+++.++|+-.|+.|.
T Consensus 300 a~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~------------------alilKG~lL~~~~R~~~A~IaFR~Aq 361 (564)
T KOG1174|consen 300 ASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHE------------------ALILKGRLLIALERHTQAVIAFRTAQ 361 (564)
T ss_pred hhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccch------------------HHHhccHHHHhccchHHHHHHHHHHH
Confidence 456667777778888888888888888888887766 77778888888888888888888888
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
.+-|.....|--+-.+|+..|++.+|.-.-+.++ ..|++..
T Consensus 362 ~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~ 403 (564)
T KOG1174|consen 362 MLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSAR 403 (564)
T ss_pred hcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchh
Confidence 8888888888777888888888888887777777 5554433
No 176
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.31 E-value=0.00045 Score=44.64 Aligned_cols=33 Identities=24% Similarity=0.454 Sum_probs=29.0
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+++|+.+|.+++.+|+|++|+++|++++ ..|+|
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 4789999999999999999999999999 77753
No 177
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.27 E-value=0.00035 Score=70.33 Aligned_cols=99 Identities=13% Similarity=0.164 Sum_probs=81.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI- 84 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l- 84 (518)
+-+.||.++-.|+|++||..-..-|.+.....+ +...-.++.|+|.||.-+|+|+.|+++|++++.+
T Consensus 198 ~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD------------rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LA 265 (639)
T KOG1130|consen 198 YGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD------------RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLA 265 (639)
T ss_pred hcccCceeeeeccHHHHHHHHHHHHHHHHHhhh------------HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHH
Confidence 446789999999999999999999998766543 1111239999999999999999999999988754
Q ss_pred ---CCC--chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ---ESS--HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ---~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
... .++.-|.+|..|.-+.+|+.|+.++++-+
T Consensus 266 ielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHL 302 (639)
T KOG1130|consen 266 IELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHL 302 (639)
T ss_pred HHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHH
Confidence 322 35677999999999999999999998866
No 178
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.25 E-value=0.0038 Score=69.22 Aligned_cols=100 Identities=15% Similarity=0.176 Sum_probs=88.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHh
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQALK 83 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~al~ 83 (518)
.....+...+..++|++|++...+++..+|++.. ++.-+|.++..++. .++|.+.|..|.+
T Consensus 4 ~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYn------------------A~vFLGvAl~sl~q~le~A~ehYv~AaK 65 (1238)
T KOG1127|consen 4 TALKSAKDALRNKEYEEALEQSKKVLKEDPDNYN------------------AQVFLGVALWSLGQDLEKAAEHYVLAAK 65 (1238)
T ss_pred hHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcch------------------hhhHHHHHHHhccCCHHHHHHHHHHHHh
Confidence 3455678888999999999999999999999987 99999999999998 9999999999999
Q ss_pred cCCCchHHHHHHHHHHHh---ccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSHFKALLCKGKILLS---LNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~---lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++|++.-||-.++..|.. ...++++..+|++++ ..++..
T Consensus 66 ldpdnlLAWkGL~nLye~~~dIl~ld~~~~~yq~~~l~le~q~ 108 (1238)
T KOG1127|consen 66 LDPDNLLAWKGLGNLYERYNDILDLDRAAKCYQRAVLILENQS 108 (1238)
T ss_pred cChhhhHHHHHHHHHHHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence 999999999999988876 567899999999988 555433
No 179
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.24 E-value=0.0072 Score=58.74 Aligned_cols=114 Identities=13% Similarity=0.082 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------------
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD------------- 70 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~------------- 70 (518)
......|..+++.++|.+|+..|++.+...|+++.. + -+++.+|.++..++.
T Consensus 70 ~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~----~-----------~a~Y~~g~~~~~~~~~~~~~~~~~~~~~ 134 (243)
T PRK10866 70 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI----D-----------YVLYMRGLTNMALDDSALQGFFGVDRSD 134 (243)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch----H-----------HHHHHHHHhhhhcchhhhhhccCCCccc
Confidence 345678999999999999999999999999998761 1 178888888765541
Q ss_pred -----HHHHHHHHHHHHhcCCCch---HHH--------------HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHH
Q 035535 71 -----FDNALRDCEQALKIESSHF---KAL--------------LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLET 127 (518)
Q Consensus 71 -----~~~Al~~~~~al~l~p~~~---ka~--------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~ 127 (518)
..+|+..+++.++.-|+.. .+. +..|.-|+..|.|..|+.-++.++ .-|+.+...+.
T Consensus 135 rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~ea 214 (243)
T PRK10866 135 RDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDA 214 (243)
T ss_pred cCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHH
Confidence 3578899999999998742 222 344667899999999999999999 77766655444
Q ss_pred HHHHH
Q 035535 128 VNGFL 132 (518)
Q Consensus 128 l~~~l 132 (518)
+..+.
T Consensus 215 l~~l~ 219 (243)
T PRK10866 215 LPLME 219 (243)
T ss_pred HHHHH
Confidence 44433
No 180
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.21 E-value=0.0025 Score=64.86 Aligned_cols=95 Identities=14% Similarity=0.074 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+++.+.|-.+-..|+.++|+++|-+.-.+.-+++. +++.+|.+|--+.+..+|++.+-++..
T Consensus 525 ealfniglt~e~~~~ldeald~f~klh~il~nn~e------------------vl~qianiye~led~aqaie~~~q~~s 586 (840)
T KOG2003|consen 525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAE------------------VLVQIANIYELLEDPAQAIELLMQANS 586 (840)
T ss_pred HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHH------------------HHHHHHHHHHHhhCHHHHHHHHHHhcc
Confidence 45566666666666666666666555544444443 556666666666666666666666666
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+-|+++..+-.+|..|-+.|+-.+|.+|+-...
T Consensus 587 lip~dp~ilskl~dlydqegdksqafq~~ydsy 619 (840)
T KOG2003|consen 587 LIPNDPAILSKLADLYDQEGDKSQAFQCHYDSY 619 (840)
T ss_pred cCCCCHHHHHHHHHHhhcccchhhhhhhhhhcc
Confidence 666666666666666666666555555544433
No 181
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.21 E-value=0.0068 Score=57.19 Aligned_cols=106 Identities=15% Similarity=0.157 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------CH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-----------DF 71 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-----------~~ 71 (518)
.+.+...|..+++.|+|.+|+..|++.+...|+++.. + -+++.+|.+++++. ..
T Consensus 42 ~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~----~-----------~A~Y~~g~~~~~~~~~~~~~~~D~~~~ 106 (203)
T PF13525_consen 42 PQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA----D-----------YALYMLGLSYYKQIPGILRSDRDQTST 106 (203)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH----H-----------HHHHHHHHHHHHHHHHHH-TT---HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch----h-----------hHHHHHHHHHHHhCccchhcccChHHH
Confidence 3566788999999999999999999999999998651 1 17788888876653 34
Q ss_pred HHHHHHHHHHHhcCCCch-----------------HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 72 DNALRDCEQALKIESSHF-----------------KALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 72 ~~Al~~~~~al~l~p~~~-----------------ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
.+|+..++..+..-|++. .--+..|.-|+..|.|..|+..++.++ .-|+.+.
T Consensus 107 ~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~ 176 (203)
T PF13525_consen 107 RKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPA 176 (203)
T ss_dssp HHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHH
T ss_pred HHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCch
Confidence 689999999999999752 123445888999999999999999999 5564443
No 182
>PRK10941 hypothetical protein; Provisional
Probab=97.09 E-value=0.0045 Score=60.77 Aligned_cols=81 Identities=17% Similarity=0.138 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 53 SLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 53 ~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
.+...+.|+=.+|++.++++.|+...+..+.++|+++.-+--+|.+|.++|.+..|..+++..+ .-|++|.. ..+...
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a-~~ik~q 257 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPIS-EMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhH-HHHHHH
Confidence 4445888999999999999999999999999999999988889999999999999999999999 77876654 444444
Q ss_pred HHH
Q 035535 132 LEK 134 (518)
Q Consensus 132 l~~ 134 (518)
+..
T Consensus 258 l~~ 260 (269)
T PRK10941 258 IHS 260 (269)
T ss_pred HHH
Confidence 443
No 183
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.07 E-value=0.01 Score=63.82 Aligned_cols=94 Identities=12% Similarity=0.047 Sum_probs=85.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.-.+..+-..|++++|++..++||+..|..++ +|...|.++-+.|++.+|.+..+.|-++|+
T Consensus 198 ~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~e------------------ly~~KarilKh~G~~~~Aa~~~~~Ar~LD~ 259 (517)
T PF12569_consen 198 YFLAQHYDYLGDYEKALEYIDKAIEHTPTLVE------------------LYMTKARILKHAGDLKEAAEAMDEARELDL 259 (517)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhCCh
Confidence 44677777899999999999999999999877 999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
.+--.-..-++.+++.|+.++|.+.+......
T Consensus 260 ~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~ 291 (517)
T PF12569_consen 260 ADRYINSKCAKYLLRAGRIEEAEKTASLFTRE 291 (517)
T ss_pred hhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCC
Confidence 88777777788899999999999999887743
No 184
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.03 E-value=0.0046 Score=56.13 Aligned_cols=71 Identities=14% Similarity=0.130 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHHhh----------hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 035535 2 LMQQLRSKATELLLR----------EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD- 70 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~----------g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~- 70 (518)
+++.|.+-|..++.. .-+++|+..|++||.++|+... +++++|.+|..++.
T Consensus 24 DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hd------------------Alw~lGnA~ts~A~l 85 (186)
T PF06552_consen 24 DADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHD------------------ALWCLGNAYTSLAFL 85 (186)
T ss_dssp -HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHH------------------HHHHHHHHHHHHHhh
Confidence 456777777777644 3468899999999999999877 99999999988764
Q ss_pred ----------HHHHHHHHHHHHhcCCCchH
Q 035535 71 ----------FDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 71 ----------~~~Al~~~~~al~l~p~~~k 90 (518)
|++|...+++|...+|++.-
T Consensus 86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 86 TPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred cCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 88999999999999998753
No 185
>PRK15331 chaperone protein SicA; Provisional
Probab=97.02 E-value=0.0062 Score=54.67 Aligned_cols=69 Identities=9% Similarity=-0.052 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
..+..|.-++..|++++|...+.-..-.||.+++-++-+|.++..+++|++|+..|..+. .++++|...
T Consensus 39 ~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~ 108 (165)
T PRK15331 39 GLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPV 108 (165)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCcc
Confidence 677888899999999999999999999999999999999999999999999999999999 777777543
No 186
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.00 E-value=0.0038 Score=62.31 Aligned_cols=97 Identities=19% Similarity=0.111 Sum_probs=60.4
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--cc--CHHHHHHHHHHHHh
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--LR--DFDNALRDCEQALK 83 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--lg--~~~~Al~~~~~al~ 83 (518)
-.-..+++.++++.|...+...-+.+.+. ...+++.++.. .| ++.+|...|+...+
T Consensus 136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~--------------------~l~qLa~awv~l~~g~e~~~~A~y~f~El~~ 195 (290)
T PF04733_consen 136 LAVQILLKMNRPDLAEKELKNMQQIDEDS--------------------ILTQLAEAWVNLATGGEKYQDAFYIFEELSD 195 (290)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHCCSCCH--------------------HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcH--------------------HHHHHHHHHHHHHhCchhHHHHHHHHHHHHh
Confidence 34455666777777777666655443322 44455554443 23 57788888888766
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
..|.++..+..+|.++..+|+|++|.+.+++++ .+|.+++.
T Consensus 196 ~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~ 237 (290)
T PF04733_consen 196 KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDT 237 (290)
T ss_dssp CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHH
Confidence 666777777788888888888888888888887 66655543
No 187
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.98 E-value=0.0082 Score=63.32 Aligned_cols=113 Identities=18% Similarity=0.268 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hhhH----HHHHHHH--HHHHHHHHHHHHHHh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QEAS----QLSKLKK--SLCLALSNRAEARSR 67 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~----~~~~~~~--~l~~~~~nra~a~~~ 67 (518)
++.+...-|.+...|+|++|+....+.+...|++.+.-. +.-+ .+.+... ......+..|.|+++
T Consensus 12 ~~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yr 91 (652)
T KOG2376|consen 12 LEALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYR 91 (652)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHH
Confidence 456777888899999999999999999999877644100 0001 0111110 111223688999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 68 LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 68 lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
+++.++|+..++ .+++...+.+.-.|+++|.+++|++|+..|+..+..
T Consensus 92 lnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn 139 (652)
T KOG2376|consen 92 LNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKN 139 (652)
T ss_pred cccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 999999999998 677888899999999999999999999999998843
No 188
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.97 E-value=0.007 Score=60.41 Aligned_cols=87 Identities=16% Similarity=0.165 Sum_probs=67.0
Q ss_pred hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535 17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKG 96 (518)
Q Consensus 17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g 96 (518)
.++.+|.-.|++..+..+..+. .+...|.|++.+|+|++|.+.+.+|++.+|+++.++.+++
T Consensus 181 e~~~~A~y~f~El~~~~~~t~~------------------~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNli 242 (290)
T PF04733_consen 181 EKYQDAFYIFEELSDKFGSTPK------------------LLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLI 242 (290)
T ss_dssp TCCCHHHHHHHHHHCCS--SHH------------------HHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHH
Confidence 3699999999997655444332 7888999999999999999999999999999999999999
Q ss_pred HHHHhccChHH-HHHHHHHHH-hcccc
Q 035535 97 KILLSLNRYSM-ALDCFKETL-VDAQA 121 (518)
Q Consensus 97 ~al~~lg~~~~-A~~~~~~al-~~p~~ 121 (518)
.+...+|+..+ +.+.+.+.. ..|++
T Consensus 243 v~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 243 VCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 99999999955 445555544 45543
No 189
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.96 E-value=0.0024 Score=62.01 Aligned_cols=92 Identities=17% Similarity=0.184 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+.|-.+|+.|+|++|++.|+.|++...-.+. +-+|.|.|+++.++|..|++...+.+
T Consensus 144 Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpl------------------lAYniALaHy~~~qyasALk~iSEIi 205 (459)
T KOG4340|consen 144 ADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPL------------------LAYNLALAHYSSRQYASALKHISEII 205 (459)
T ss_pred cchhccchheeeccccHHHHHHHHHHHHhhcCCCch------------------hHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456778899999999999999999999998766654 78899999999999999999988877
Q ss_pred hc----CCC-------------------------chHHHHHHHHHHHhccChHHHHHHH
Q 035535 83 KI----ESS-------------------------HFKALLCKGKILLSLNRYSMALDCF 112 (518)
Q Consensus 83 ~l----~p~-------------------------~~ka~~~~g~al~~lg~~~~A~~~~ 112 (518)
+. .|. -..|+..++.++++.++|+.|.+.+
T Consensus 206 eRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaL 264 (459)
T KOG4340|consen 206 ERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEAL 264 (459)
T ss_pred HhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHh
Confidence 54 332 2456677788888888888887654
No 190
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.94 E-value=0.0022 Score=64.14 Aligned_cols=81 Identities=17% Similarity=0.081 Sum_probs=56.9
Q ss_pred chhhhhhhhccccccchhhh-h--hhhhCCCCCcceeEeecccccccCCCC-CCceEEeeCCEEEEEEcCCCCCCCeEEe
Q 035535 277 LDMGKILSILDVNSLVEDAI-S--AKVLGKNKGLYGLGLWALASFINHSCS-PNARRVHVGDYIIVHASRDVKAGEEITF 352 (518)
Q Consensus 277 ~d~~~~~~i~~~N~f~~~~~-~--~~~~g~~~~~~~~gl~~~~s~~NHsC~-PN~~~~~~~~~~~v~A~rdI~~Geeit~ 352 (518)
.|+..+.+++...+|.+... + ..-........|-.+-|.+.++||+=. -|+...+..+.+.+.|.|+|++|+|+..
T Consensus 177 EdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~nanl~y~~NcL~mva~r~iekgdev~n 256 (466)
T KOG1338|consen 177 EDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKANANLRYEDNCLEMVADRNIEKGDEVDN 256 (466)
T ss_pred HHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhcccceeccCcceeeeecCCCCCcccccc
Confidence 34666666666666665422 1 000111222556788899999999865 5676777888999999999999999999
Q ss_pred ecCCC
Q 035535 353 AYFDM 357 (518)
Q Consensus 353 sY~~~ 357 (518)
+|+-.
T Consensus 257 ~dg~~ 261 (466)
T KOG1338|consen 257 SDGLK 261 (466)
T ss_pred ccccC
Confidence 99843
No 191
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.0024 Score=69.46 Aligned_cols=110 Identities=20% Similarity=0.304 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--LRDFDNALRDCE 79 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--lg~~~~Al~~~~ 79 (518)
.+..++.+||.+|++++|.+|.-.|..++.+.|.+.. ..+....|.+.|++. +++|..++.+++
T Consensus 52 ra~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~--------------~~a~~~~~~~s~~m~~~l~~~~~~~~E~~ 117 (748)
T KOG4151|consen 52 RALELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHH--------------VVATLRSNQASCYMQLGLGEYPKAIPECE 117 (748)
T ss_pred HHHHHHhhhhHHhhhhhhhccchhhhhhheeccccch--------------hhhhHHHHHHHHHhhcCccchhhhcCchh
Confidence 3567899999999999999999999999999885432 123378888888766 569999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
-|+...|..-+++++++.+|..+++.+-|++.+.-.. ..|.++...
T Consensus 118 la~~~~p~i~~~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~ 164 (748)
T KOG4151|consen 118 LALESQPRISKALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVSAS 164 (748)
T ss_pred hhhhccchHHHHHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcchHH
Confidence 9999999999999999999999999999999966665 666655443
No 192
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.90 E-value=0.0022 Score=64.78 Aligned_cols=99 Identities=18% Similarity=0.242 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
-++-.+|..+++.|+++..+..|..||+.-..+. +.+..+|+.+|.+|+.+++|++|+++-..-|.
T Consensus 18 leLalEGERLck~gdcraGv~ff~aA~qvGTeDl--------------~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDlt 83 (639)
T KOG1130|consen 18 LELALEGERLCKMGDCRAGVDFFKAALQVGTEDL--------------STLSAIYSQLGNAYFYLKDYEKALKYHTHDLT 83 (639)
T ss_pred HHHHHHHHHHHhccchhhhHHHHHHHHHhcchHH--------------HHHHHHHHHhcchhhhHhhHHHHHhhhhhhHH
Confidence 4677899999999999999999999999765443 35666899999999999999999996554443
Q ss_pred c----C--CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 I----E--SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l----~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+ . -..+|+--++|..+--+|.|++|+-+..+-+
T Consensus 84 lar~lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhL 122 (639)
T KOG1130|consen 84 LARLLGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHL 122 (639)
T ss_pred HHHHhcchhccccccccccchhhhhcccchHHHHHHHHh
Confidence 3 2 2457888899999999999999999988766
No 193
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.90 E-value=0.0088 Score=63.76 Aligned_cols=129 Identities=18% Similarity=0.105 Sum_probs=91.8
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh------hhhhHHHHHHHHHHH---------HHHHHHHHHHHhccC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITET------KQEASQLSKLKKSLC---------LALSNRAEARSRLRD 70 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~------~~~~~~~~~~~~~l~---------~~~~nra~a~~~lg~ 70 (518)
|...+...+..|+..+|.....+|++..|++.+-= ...-.+.+..+.+++ .+|+.-+.....+++
T Consensus 587 wlM~ake~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~ 666 (913)
T KOG0495|consen 587 WLMYAKEKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDN 666 (913)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhh
Confidence 44456677778888888888888888888752200 000001112222222 145555666667899
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
.++|+..++++|+.-|+..|.|+.+|+++..+++.+.|.+.|...+ .-|..+.-+-.+..+-++
T Consensus 667 ~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk 731 (913)
T KOG0495|consen 667 VEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEK 731 (913)
T ss_pred HHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999 777666655555444443
No 194
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.87 E-value=0.0017 Score=45.05 Aligned_cols=35 Identities=9% Similarity=-0.049 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccc
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT 38 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~ 38 (518)
+.+...|..+...|++++|+..|+++++.+|+++.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~ 36 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPE 36 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHH
Confidence 46788999999999999999999999999999976
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.84 E-value=0.0046 Score=57.57 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.+.-.|.-+...|+|+.|.+.|+-.++++|...- ++.|||.+++--|+|.-|.+|+.+--
T Consensus 99 ~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Y------------------a~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 99 PEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNY------------------AHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred HHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchH------------------HHhccceeeeecCchHhhHHHHHHHH
Confidence 445566788888999999999999999999999866 89999999999999999999999888
Q ss_pred hcCCC
Q 035535 83 KIESS 87 (518)
Q Consensus 83 ~l~p~ 87 (518)
+-||+
T Consensus 161 Q~D~~ 165 (297)
T COG4785 161 QDDPN 165 (297)
T ss_pred hcCCC
Confidence 77776
No 196
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.78 E-value=0.0019 Score=41.77 Aligned_cols=31 Identities=29% Similarity=0.429 Sum_probs=21.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
+|+++|.++.++|++++|+..++++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5667777777777777777777777777664
No 197
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.76 E-value=0.0055 Score=60.59 Aligned_cols=67 Identities=24% Similarity=0.324 Sum_probs=61.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
..+++.+||+.+.|..|..-++.|+.++..+.. +|+.|+.+...+|...+|.+||+.+|++.
T Consensus 134 ~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~K------------------AYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 134 HINRALAYLKQKSFAQAEEDCEAAIALDKLYVK------------------AYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred hhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHH------------------HHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 467899999999999999999999999876654 99999999999999999999999999999
Q ss_pred CCchH
Q 035535 86 SSHFK 90 (518)
Q Consensus 86 p~~~k 90 (518)
|.+..
T Consensus 196 P~~~E 200 (536)
T KOG4648|consen 196 PKNIE 200 (536)
T ss_pred cccHH
Confidence 98643
No 198
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=96.76 E-value=0.0047 Score=66.63 Aligned_cols=71 Identities=15% Similarity=0.036 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|-.+...|++++|...|++|++++|+ .. +|..+|.++...|++++|++.+++|+.+
T Consensus 422 ~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~------------------a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 422 IYEILAVQALVKGKTDEAYQAINKAIDLEMS-WL------------------NYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3455677778899999999999999999984 44 8999999999999999999999999999
Q ss_pred CCCchHHHHH
Q 035535 85 ESSHFKALLC 94 (518)
Q Consensus 85 ~p~~~ka~~~ 94 (518)
+|.++..|..
T Consensus 483 ~P~~pt~~~~ 492 (517)
T PRK10153 483 RPGENTLYWI 492 (517)
T ss_pred CCCCchHHHH
Confidence 9998875443
No 199
>KOG1141 consensus Predicted histone methyl transferase [Chromatin structure and dynamics]
Probab=96.74 E-value=0.00062 Score=73.34 Aligned_cols=58 Identities=33% Similarity=0.653 Sum_probs=41.8
Q ss_pred ccccCCCCCCceEE--eeCC------EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535 317 SFINHSCSPNARRV--HVGD------YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK 381 (518)
Q Consensus 317 s~~NHsC~PN~~~~--~~~~------~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~ 381 (518)
.++||||.||..+. |.+. -+.+++.+-|++|+|||..|....-.. ...-..|+| ..|+
T Consensus 1191 RfLNHSC~PNl~VQnVfvdTHdlrfPwVAFFt~kyVkAgtELTWDY~Ye~g~v-------~~keL~C~CGa~~Cr 1258 (1262)
T KOG1141|consen 1191 RFLNHSCDPNLHVQNVFVDTHDLRFPWVAFFTRKYVKAGTELTWDYQYEQGQV-------ATKELTCHCGAENCR 1258 (1262)
T ss_pred hhhccCCCccceeeeeeeeccccCCchhhhhhhhhhccCceeeeecccccccc-------ccceEEEecChhhhh
Confidence 59999999999753 4432 467889999999999999997653222 123366777 4554
No 200
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.73 E-value=0.0049 Score=44.55 Aligned_cols=39 Identities=28% Similarity=0.372 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
.++.+|.+++++|+|.+|...++.+|+++|+|.++.--+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~ 41 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLK 41 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 677888888888888888888888888888887765443
No 201
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.011 Score=57.12 Aligned_cols=75 Identities=16% Similarity=0.104 Sum_probs=65.7
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
.+|.|.-+++.|+|..|...|..-++.-|+. +.|+|-+|.+++.+|+|++|...|..++ ..|+.+..-+.+-++-
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 7899999999999999999999999998875 6799999999999999999999999999 7787776655544433
No 202
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.63 E-value=0.014 Score=51.32 Aligned_cols=68 Identities=12% Similarity=0.120 Sum_probs=62.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.+++.|...++.|+|.+|++.++.....-|. -.++.+.+|-+|+..++|++|+..+++.+ +.|.++..
T Consensus 12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 7899999999999999999999999988764 46899999999999999999999999999 89988864
No 203
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.55 E-value=0.026 Score=60.30 Aligned_cols=102 Identities=8% Similarity=-0.033 Sum_probs=91.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-|...++...-.++.++|+.+++++|...|.... +|..+|+++-++++.+.|.+.|...++.
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~K------------------l~lmlGQi~e~~~~ie~aR~aY~~G~k~ 714 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHK------------------LWLMLGQIEEQMENIEMAREAYLQGTKK 714 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHH------------------HHHHHhHHHHHHHHHHHHHHHHHhcccc
Confidence 3455566666788999999999999999999876 9999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
-|.....|..++..-...|..-.|...|.++. ..|.+...
T Consensus 715 cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~l 755 (913)
T KOG0495|consen 715 CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALL 755 (913)
T ss_pred CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchh
Confidence 99999999999999999999999999999999 77766544
No 204
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.53 E-value=0.033 Score=59.29 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=86.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-+.+.+..+|+.++|..|++.|...+...|.+..+. ..+-..-+++.||+++.+.+.|++.+.+|-+.
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~------------~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSD------------RFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhh------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 357788899999999999999999999888765411 11336778999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
||.++-.-+..-.+....+.-++|+.+..+..
T Consensus 424 d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 424 DRQSPLCQLLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred ccccHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 99999888888899999999999999998877
No 205
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.53 E-value=0.026 Score=48.41 Aligned_cols=62 Identities=26% Similarity=0.163 Sum_probs=57.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
.+---|.++..-|+.+.|++-+.++|.+-|.++.+|.++++++.-.|+.++|++++.+++..
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 45566888889999999999999999999999999999999999999999999999999943
No 206
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.51 E-value=0.0067 Score=60.25 Aligned_cols=89 Identities=11% Similarity=0.079 Sum_probs=73.3
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
..++...+|..|+...+-.+.++....+ ..-.-+|.|++.+|+|++|+..++.+.+.+..+.+
T Consensus 30 edfls~rDytGAislLefk~~~~~EEE~-----------------~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~e 92 (557)
T KOG3785|consen 30 EDFLSNRDYTGAISLLEFKLNLDREEED-----------------SLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAE 92 (557)
T ss_pred HHHHhcccchhHHHHHHHhhccchhhhH-----------------HHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcc
Confidence 4567788999999999888755433211 14456799999999999999999999998877899
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 91 ALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+.++|.+++-+|.|.+|...-.++-
T Consensus 93 l~vnLAcc~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 93 LGVNLACCKFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred cchhHHHHHHHHHHHHHHHHHHhhCC
Confidence 99999999999999999998777664
No 207
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.47 E-value=0.025 Score=62.37 Aligned_cols=92 Identities=15% Similarity=0.137 Sum_probs=79.7
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
-.....++|.+|+....+.++..|+... +..--|..++++|++++|...++..-...+++..
T Consensus 17 ~d~ld~~qfkkal~~~~kllkk~Pn~~~------------------a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~ 78 (932)
T KOG2053|consen 17 YDLLDSSQFKKALAKLGKLLKKHPNALY------------------AKVLKALSLFRLGKGDEALKLLEALYGLKGTDDL 78 (932)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHhcCchhHHHHHhhhccCCCCchH
Confidence 3456789999999999999999999765 6777899999999999999666555556677888
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 91 ALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
.+-.+-.+|..++++++|..+|+++. ..|+
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~ 109 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQKYPS 109 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc
Confidence 88999999999999999999999999 7764
No 208
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.39 E-value=0.025 Score=59.83 Aligned_cols=56 Identities=20% Similarity=0.188 Sum_probs=35.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
++.-.-.|+.++++|++|+.+.+.-....-.+.. .|.++.|.|++++.++|+.+++
T Consensus 48 a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~-~fEKAYc~Yrlnk~Dealk~~~ 103 (652)
T KOG2376|consen 48 AIRCKVVALIQLDKYEDALKLIKKNGALLVINSF-FFEKAYCEYRLNKLDEALKTLK 103 (652)
T ss_pred hHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchh-hHHHHHHHHHcccHHHHHHHHh
Confidence 4555566777788888887544443322222222 2677788888888888888877
No 209
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.39 E-value=0.0065 Score=39.15 Aligned_cols=30 Identities=33% Similarity=0.533 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++|+.+|.++..+|++++|+.+|++++ ..|
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~ 32 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNP 32 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 689999999999999999999999999 665
No 210
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.081 Score=51.82 Aligned_cols=94 Identities=20% Similarity=0.182 Sum_probs=77.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH------
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDC------ 78 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~------ 78 (518)
.-..++..+...|++.+|...+..++...|.... +..-++.||+..|+.+.|...+
T Consensus 136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~------------------~~~~la~~~l~~g~~e~A~~iL~~lP~~ 197 (304)
T COG3118 136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSE------------------AKLLLAECLLAAGDVEAAQAILAALPLQ 197 (304)
T ss_pred HHHHHhhhhhhccchhhHHHHHHHHHHhCcccch------------------HHHHHHHHHHHcCChHHHHHHHHhCccc
Confidence 3456788899999999999999999999999866 7788888888888875544322
Q ss_pred ----------------------------HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 79 ----------------------------EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 79 ----------------------------~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+.+..||++..+-+.+|..|...|++++|++.+-..+
T Consensus 198 ~~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 198 AQDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred chhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334489999999999999999999999999998877
No 211
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.22 E-value=0.12 Score=46.85 Aligned_cols=60 Identities=27% Similarity=0.277 Sum_probs=26.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGK-ILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al 116 (518)
.+.+.+..+..++++..++..+..++..++.........+. ++...++++.|...|.+++
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 157 (291)
T COG0457 97 ALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKAL 157 (291)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44444444444444444444444444444443333333333 4444444444444444443
No 212
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.20 E-value=0.016 Score=61.11 Aligned_cols=94 Identities=22% Similarity=0.180 Sum_probs=83.7
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC 94 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~ 94 (518)
..|+...|+.+...|+...|..... ...|+|.+.++-+-...|-..+.++|.++...+-.+|.
T Consensus 619 ~~gn~~~a~~cl~~a~~~~p~~~~v-----------------~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~ 681 (886)
T KOG4507|consen 619 AVGNSTFAIACLQRALNLAPLQQDV-----------------PLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLS 681 (886)
T ss_pred ecCCcHHHHHHHHHHhccChhhhcc-----------------cHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHh
Confidence 4688899999999999998876541 57899999999999999999999999999888899999
Q ss_pred HHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 95 KGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 95 ~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
+|.+++.+.+.+.|++.|+.|+ ++|+++...
T Consensus 682 ~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~ 713 (886)
T KOG4507|consen 682 LGNAYLALKNISGALEAFRQALKLTTKCPECE 713 (886)
T ss_pred cchhHHHHhhhHHHHHHHHHHHhcCCCChhhH
Confidence 9999999999999999999999 887766543
No 213
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.18 E-value=0.11 Score=47.96 Aligned_cols=96 Identities=17% Similarity=0.129 Sum_probs=74.6
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
....+..++..+++++|+...+.++..-.+ ..+..++-.++|.+.+.+|.+++|+..++..-.
T Consensus 92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~D---------------e~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~-- 154 (207)
T COG2976 92 ALELAKAEVEANNLDKAEAQLKQALAQTKD---------------ENLKALAALRLARVQLQQKKADAALKTLDTIKE-- 154 (207)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccchh---------------HHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--
Confidence 456778889999999999999999965322 223445888999999999999999987665322
Q ss_pred CCch-HHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535 86 SSHF-KALLCKGKILLSLNRYSMALDCFKETL-VD 118 (518)
Q Consensus 86 p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al-~~ 118 (518)
+.+. ..--.+|-++...|+-++|+..|++++ ..
T Consensus 155 ~~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 155 ESWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred ccHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 2222 224578999999999999999999999 44
No 214
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.11 E-value=0.081 Score=50.97 Aligned_cols=70 Identities=24% Similarity=0.239 Sum_probs=55.6
Q ss_pred HHHHHHHHHhc----cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHH
Q 035535 58 LSNRAEARSRL----RDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLET 127 (518)
Q Consensus 58 ~~nra~a~~~l----g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~ 127 (518)
+..+|.++.++ +++.+|.-.|+..-+.-|..+..+.-++.+...+++|++|...++.+| .++++|+...+
T Consensus 172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~N 246 (299)
T KOG3081|consen 172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLAN 246 (299)
T ss_pred HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHH
Confidence 44466666554 468889999999888677788999999999999999999999999999 77777654433
No 215
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.08 E-value=0.011 Score=38.85 Aligned_cols=31 Identities=13% Similarity=0.308 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.|.+.|+.+.+.|+|++|+.+|+++|.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4678999999999999999999998876544
No 216
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=96.08 E-value=0.097 Score=47.59 Aligned_cols=93 Identities=26% Similarity=0.406 Sum_probs=74.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhhc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ch
Q 035535 12 ELLLREEWKESVQVYTQFIDLCQS-QITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS-HF 89 (518)
Q Consensus 12 ~~~~~g~~~~Ai~~y~~Al~~~p~-~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-~~ 89 (518)
.++..|+++.|+..|.+++...|. ... ...+..++..+...+++..|+..+.+++...+. ..
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (291)
T COG0457 139 ALYELGDYEEALELYEKALELDPELNEL----------------AEALLALGALLEALGRYEEALELLEKALKLNPDDDA 202 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCccch----------------HHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch
Confidence 788899999999999999886663 111 115566666688888999999999999999888 68
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
..+..++..+...++++.|...+.+++ ..|.
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 234 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPD 234 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc
Confidence 888999999999999999999999888 5543
No 217
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=96.00 E-value=0.0054 Score=65.29 Aligned_cols=43 Identities=40% Similarity=0.529 Sum_probs=35.6
Q ss_pred ccccccCCCCCCceEE---eeCC-EEEEEEcCCCCCCCeEEeecCCC
Q 035535 315 LASFINHSCSPNARRV---HVGD-YIIVHASRDVKAGEEITFAYFDM 357 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~---~~~~-~~~v~A~rdI~~Geeit~sY~~~ 357 (518)
.+.+.|||-.|||... +.|+ +|-|+|.|.|.+|||||+.|...
T Consensus 665 k~rFANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrYs 711 (739)
T KOG1079|consen 665 KIRFANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRYS 711 (739)
T ss_pred hhhhccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeeccC
Confidence 3468999999999743 3354 89999999999999999999753
No 218
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.98 E-value=0.056 Score=51.91 Aligned_cols=67 Identities=22% Similarity=0.196 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.++-|.+.+|+-.++|..|...+++.+..||.++.+-.++|.|++-+|+..+|++.++.++ .+|...
T Consensus 253 ~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~~ 320 (366)
T KOG2796|consen 253 MVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRHY 320 (366)
T ss_pred HHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCccc
Confidence 4788899999999999999999999999999999999999999999999999999999999 777544
No 219
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.94 E-value=0.087 Score=51.47 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=77.7
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH
Q 035535 12 ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA 91 (518)
Q Consensus 12 ~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka 91 (518)
.+.+..+|.+||++.+--.+..|..-. .++-+|.||+...+|..|...+++.-.+.|...+-
T Consensus 19 ~lI~d~ry~DaI~~l~s~~Er~p~~rA------------------gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 19 RLIRDARYADAIQLLGSELERSPRSRA------------------GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred HHHHHhhHHHHHHHHHHHHhcCccchH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 347888999999999988888886544 78899999999999999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+.-++.++..+.|.+|+.......
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~ 105 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLL 105 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhc
Confidence 9999999999999999998876554
No 220
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.88 E-value=0.051 Score=54.37 Aligned_cols=99 Identities=15% Similarity=0.150 Sum_probs=82.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+-..|+++...+.|+++++.|++|+.+..+..++ .+-..++..++..+-++++|++|+-...+|.++-
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~------------~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv 192 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDA------------MLELQVCVSLGSLFAQLKDYEKALFFPCKAAELV 192 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCc------------eeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHH
Confidence 4457999999999999999999999997665431 1112378899999999999999999999998873
Q ss_pred CC----------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 86 SS----------HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 86 p~----------~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.. +.-++|+++.+|..+|+..+|.++.+++.
T Consensus 193 ~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~ 233 (518)
T KOG1941|consen 193 NSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAM 233 (518)
T ss_pred HhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 22 23478999999999999999999999988
No 221
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.84 E-value=0.06 Score=57.54 Aligned_cols=96 Identities=20% Similarity=0.144 Sum_probs=73.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+...|..+..+|+.++|++.|++++..... .++...++++.++-+++-+.+|++|..++.+..+.+
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--------------~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s 335 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIESQSE--------------WKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES 335 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccchhh--------------HHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc
Confidence 456788888999999999999999853222 122334589999999999999999999999998865
Q ss_pred CCchHHH--HHHHHHHHhccCh-------HHHHHHHHHHH
Q 035535 86 SSHFKAL--LCKGKILLSLNRY-------SMALDCFKETL 116 (518)
Q Consensus 86 p~~~ka~--~~~g~al~~lg~~-------~~A~~~~~~al 116 (518)
. +.+++ |..|.++..+++. ++|.+.|+++-
T Consensus 336 ~-WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 336 K-WSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred c-cHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 4 45554 5678889999988 56666555554
No 222
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.78 E-value=0.015 Score=36.91 Aligned_cols=29 Identities=21% Similarity=0.323 Sum_probs=19.2
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 91 ALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++|++|.++..+|++++|++.|++++ ..|
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 56666677766667777777666666 444
No 223
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=95.74 E-value=0.005 Score=65.89 Aligned_cols=62 Identities=27% Similarity=0.283 Sum_probs=49.6
Q ss_pred ceeEeecccccccCCCCCCceEEee-CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeE
Q 035535 308 YGLGLWALASFINHSCSPNARRVHV-GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFH 374 (518)
Q Consensus 308 ~~~gl~~~~s~~NHsC~PN~~~~~~-~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~ 374 (518)
.-.++.|...+.||+|.+....+.. +..+.+.+.++|.+||||+|+|++... .+|+.+|||.
T Consensus 229 ~~~~L~P~~D~~NH~~~~~~~~~~~~d~~~~l~~~~~v~~geevfi~YG~~~N-----~eLL~~YGFv 291 (472)
T KOG1337|consen 229 DNEALAPLIDLLNHSPEVIKAGYNQEDEAVELVAERDVSAGEEVFINYGPKSN-----AELLLHYGFV 291 (472)
T ss_pred cchhhhhhHHhhccCchhccccccCCCCcEEEEEeeeecCCCeEEEecCCCch-----HHHHHhcCCC
Confidence 3468999999999999993333332 348999999999999999999998432 2577899997
No 224
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=95.72 E-value=0.019 Score=35.18 Aligned_cols=31 Identities=39% Similarity=0.539 Sum_probs=27.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
++.++|.++..++++++|+..++++++++|+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 6888899999999999999999999988875
No 225
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=95.62 E-value=0.1 Score=43.61 Aligned_cols=93 Identities=15% Similarity=0.149 Sum_probs=75.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----------CHHHHHHH
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-----------DFDNALRD 77 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-----------~~~~Al~~ 77 (518)
++..+|.+|++-+|++..+..+...+++..+ ...+.--|.++.++. -.-.|++.
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~---------------~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~ 66 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDESS---------------WLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVEC 66 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCCch---------------HHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHH
Confidence 5678999999999999999999988776531 014555566655543 24578999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.++..+.|..+..+|.+|.=+-....|+++..-.+++|
T Consensus 67 ~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~kak~~L 105 (111)
T PF04781_consen 67 FSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKAKRGL 105 (111)
T ss_pred HHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence 999999999999999999999888889999999999888
No 226
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=95.57 E-value=0.018 Score=37.96 Aligned_cols=25 Identities=24% Similarity=0.448 Sum_probs=12.4
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
|..+|.+|..+|+|++|+++|++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4445555555555555555555544
No 227
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=95.52 E-value=0.26 Score=46.81 Aligned_cols=98 Identities=19% Similarity=0.129 Sum_probs=70.9
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHHHHHHHHhcCC-
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-------FDNALRDCEQALKIES- 86 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-------~~~Al~~~~~al~l~p- 86 (518)
....+++|++.|.-||-...-.... ....+.++..+|=.|..+|+ +..|++.+.+|++...
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~~~~~-----------~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~ 157 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQIKKEK-----------PSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDF 157 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHHhCCC-----------HHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4457899999999998764322110 11233467777777777777 4567777777776542
Q ss_pred -----CchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC
Q 035535 87 -----SHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASG 123 (518)
Q Consensus 87 -----~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~ 123 (518)
+....+|.+|...+.+|++++|.+.|.+++..+..+.
T Consensus 158 ~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~ 199 (214)
T PF09986_consen 158 PIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASK 199 (214)
T ss_pred CCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence 2367899999999999999999999999997765554
No 228
>PRK04841 transcriptional regulator MalT; Provisional
Probab=95.47 E-value=0.15 Score=59.30 Aligned_cols=99 Identities=14% Similarity=0.100 Sum_probs=68.1
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+...|..+...|++++|...|.+++........ ......++.++|.+++..|++++|...+++++.+-
T Consensus 494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~ 561 (903)
T PRK04841 494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDV------------YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLI 561 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 344566666777777777777777766543221 00112366788888888999999988888888752
Q ss_pred C--------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 86 S--------SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 86 p--------~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
. ...-.+..+|.+++..|++++|...+.+++
T Consensus 562 ~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 600 (903)
T PRK04841 562 EEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGL 600 (903)
T ss_pred HHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhH
Confidence 1 122345567888888899999988888887
No 229
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.47 E-value=0.026 Score=58.40 Aligned_cols=113 Identities=15% Similarity=0.140 Sum_probs=84.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHH-HHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQF-IDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~A-l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+..+.-+.+..|..|+|..|....... |...|.. ..+|+ -.-|+++.|+|-++++++.|..+...+.+|
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~----~~T~q------~~~cif~NNlGcIh~~~~~y~~~~~~F~kA 309 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGG----TITPQ------LSSCIFNNNLGCIHYQLGCYQASSVLFLKA 309 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhcccccccCc----cccch------hhhheeecCcceEeeehhhHHHHHHHHHHH
Confidence 456677888999999999998876543 2222221 11221 134668899999999999999999999999
Q ss_pred Hh---------cCC---------CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 82 LK---------IES---------SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 82 l~---------l~p---------~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
++ +.| .....+|+.|..|+..|+.-.|.+||.+++ ....+|--+
T Consensus 310 L~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlW 372 (696)
T KOG2471|consen 310 LRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLW 372 (696)
T ss_pred HHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHH
Confidence 95 122 246789999999999999999999999999 554455443
No 230
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.41 E-value=0.11 Score=49.55 Aligned_cols=71 Identities=20% Similarity=0.241 Sum_probs=63.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+.+....++..|+|-++++..+..|...|.+.. +|+.||.++...=+..+|..|+.++|+++
T Consensus 233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvK------------------A~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVK------------------AYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHH------------------HHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 556778889999999999999999999999876 99999999999999999999999999999
Q ss_pred CCchHHHHH
Q 035535 86 SSHFKALLC 94 (518)
Q Consensus 86 p~~~ka~~~ 94 (518)
|.-..+--+
T Consensus 295 pslasvVsr 303 (329)
T KOG0545|consen 295 PSLASVVSR 303 (329)
T ss_pred hhhHHHHHH
Confidence 976555433
No 231
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.39 E-value=0.12 Score=52.49 Aligned_cols=112 Identities=15% Similarity=0.139 Sum_probs=81.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...+..+...|++++|.+...+++...-+.. .-+=.-.++.+++..=++..++.++..|
T Consensus 267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~---------------------L~~~~~~l~~~d~~~l~k~~e~~l~~h~ 325 (400)
T COG3071 267 VAYAERLIRLGDHDEAQEIIEDALKRQWDPR---------------------LCRLIPRLRPGDPEPLIKAAEKWLKQHP 325 (400)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHhccChh---------------------HHHHHhhcCCCCchHHHHHHHHHHHhCC
Confidence 3456667889999999999999997642210 1111234567888888888888888888
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+++-.++.+|..++..+.|.+|..+|+.++ ..| ...+...+...+.+..+.++
T Consensus 326 ~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~-s~~~~~~la~~~~~~g~~~~ 379 (400)
T COG3071 326 EDPLLLSTLGRLALKNKLWGKASEALEAALKLRP-SASDYAELADALDQLGEPEE 379 (400)
T ss_pred CChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC-ChhhHHHHHHHHHHcCChHH
Confidence 888888888999998899999988888888 444 33455666777766655443
No 232
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.31 E-value=0.056 Score=52.91 Aligned_cols=69 Identities=17% Similarity=0.221 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++-.+.|.-..+.|+.++|...++.|+.++|+++.++...|.....-++.-+|-++|-+|+ ..|.+++.
T Consensus 117 ~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseA 186 (472)
T KOG3824|consen 117 ILALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEA 186 (472)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHH
Confidence 3566777888899999999999999999999999999999999999999999999999999 88877654
No 233
>PRK10941 hypothetical protein; Provisional
Probab=95.27 E-value=0.1 Score=51.33 Aligned_cols=76 Identities=11% Similarity=0.086 Sum_probs=66.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-+.+.-..+.+.++|+.|+.+.+..+.+.|+++. -+--||.+|.++|.+..|+.|++.-++.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~------------------e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPY------------------EIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 3456667889999999999999999999999876 6778999999999999999999999999
Q ss_pred CCCchHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKI 98 (518)
Q Consensus 85 ~p~~~ka~~~~g~a 98 (518)
.|+.+.+-.-+.++
T Consensus 245 ~P~dp~a~~ik~ql 258 (269)
T PRK10941 245 CPEDPISEMIRAQI 258 (269)
T ss_pred CCCchhHHHHHHHH
Confidence 99998876655444
No 234
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.26 E-value=0.64 Score=44.14 Aligned_cols=106 Identities=15% Similarity=0.137 Sum_probs=76.7
Q ss_pred HHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 8 SKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 8 ~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
..|..+-.. .++++||.+|++|-+......+. +.. ..++...|.--..+++|.+|+..++++....-
T Consensus 118 ~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~---ssA---------NKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~ 185 (288)
T KOG1586|consen 118 EIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV---SSA---------NKCLLKVAQYAAQLEQYSKAIDIYEQVARSSL 185 (288)
T ss_pred hHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh---hhH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344444444 68999999999999887655431 111 12677777777889999999999999876543
Q ss_pred Cc------hHHH-HHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 87 SH------FKAL-LCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 87 ~~------~ka~-~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
+| +|.| +..|.|++...+.-.|...+++.. .+|...+..
T Consensus 186 ~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~F~dsR 232 (288)
T KOG1586|consen 186 DNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPAFTDSR 232 (288)
T ss_pred cchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccccH
Confidence 33 4554 456778888788888999999998 888877653
No 235
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.21 E-value=0.055 Score=39.07 Aligned_cols=35 Identities=14% Similarity=0.138 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
..+|.+|.+++.+|+|++|.++.+.+| ..|++.+.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa 37 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQA 37 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHH
Confidence 357899999999999999999999999 77765543
No 236
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.20 E-value=0.027 Score=35.73 Aligned_cols=32 Identities=25% Similarity=0.302 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
+++++|.++.++|++++|+..++++++..|++
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 78999999999999999999999999999874
No 237
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.15 E-value=0.11 Score=45.97 Aligned_cols=63 Identities=19% Similarity=0.166 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...+..+...|++++|+..+.+++..+|.+.. +|..+-.+|..+|++.+|+..|++..
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~------------------~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEE------------------AYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HH------------------HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345667788888999999999999999999999866 89999999999999999999888774
Q ss_pred h
Q 035535 83 K 83 (518)
Q Consensus 83 ~ 83 (518)
.
T Consensus 124 ~ 124 (146)
T PF03704_consen 124 R 124 (146)
T ss_dssp H
T ss_pred H
Confidence 3
No 238
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=95.10 E-value=0.024 Score=58.78 Aligned_cols=76 Identities=22% Similarity=0.173 Sum_probs=67.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
-+++.++++.++|..|+.-..+||+++|.... +|+.+|.+.+++++|.+|+.+++....+.|
T Consensus 42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K------------------~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~P 103 (476)
T KOG0376|consen 42 ANRALAHLKVESFGGALHDALKAIELDPTYIK------------------AYVRRGTAVMALGEFKKALLDLEKVKKLAP 103 (476)
T ss_pred chhhhhheeechhhhHHHHHHhhhhcCchhhh------------------eeeeccHHHHhHHHHHHHHHHHHHhhhcCc
Confidence 34667788999999999999999999998766 999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILL 100 (518)
Q Consensus 87 ~~~ka~~~~g~al~ 100 (518)
+.+++.-....|-.
T Consensus 104 nd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 104 NDPDATRKIDECNK 117 (476)
T ss_pred CcHHHHHHHHHHHH
Confidence 99987765555543
No 239
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.10 E-value=0.057 Score=52.86 Aligned_cols=75 Identities=13% Similarity=0.138 Sum_probs=66.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.+.+....+.|+.++|...|..|+.++|.++. ++...|+..-..++.-+|-..|-+||.++|
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~------------------~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNPQ------------------ILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCHH------------------HHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 34566677899999999999999999999987 888889888888899999999999999999
Q ss_pred CchHHHHHHHHHH
Q 035535 87 SHFKALLCKGKIL 99 (518)
Q Consensus 87 ~~~ka~~~~g~al 99 (518)
.|.+|+.++++..
T Consensus 182 ~nseALvnR~RT~ 194 (472)
T KOG3824|consen 182 GNSEALVNRARTT 194 (472)
T ss_pred CchHHHhhhhccc
Confidence 9999999887654
No 240
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.01 E-value=0.03 Score=52.64 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=55.9
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF 89 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ 89 (518)
..+++.++.+.|.+.|.+|+.+.|.... .|+..+.-..+.|+++.|.+.+++.+++||.+.
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~~------------------gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWAA------------------GWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhhh------------------hhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 3567889999999999999999998776 899999999999999999999999999999763
No 241
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=94.97 E-value=0.33 Score=44.73 Aligned_cols=98 Identities=16% Similarity=0.187 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+..+|+-+.+.|++++|++.|.++.+....... ....+++.-.+.+..+++..+.....+|-.
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---------------~id~~l~~irv~i~~~d~~~v~~~i~ka~~ 101 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---------------KIDMCLNVIRVAIFFGDWSHVEKYIEKAES 101 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---------------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 45678899999999999999999998876533211 122778888888889999999999888876
Q ss_pred cC--CCch----HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IE--SSHF----KALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~--p~~~----ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+- +.++ +.-...|..++..++|..|.+.|-.+.
T Consensus 102 ~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 102 LIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 53 2222 223344677778889999998887776
No 242
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.93 E-value=0.13 Score=41.98 Aligned_cols=65 Identities=22% Similarity=0.413 Sum_probs=49.4
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 12 ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 12 ~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
...+.|+|.+|++.+.+..+......... ....+..+..|+|.++...|++++|+..+++|+++-
T Consensus 7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~---------~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 7 NALRSGDYSEALDALHRYFDYAKQSNNSS---------SNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhhcccch---------hhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 35678999999999999998876554311 012344578889999999999999999999988773
No 243
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=94.91 E-value=0.39 Score=48.31 Aligned_cols=103 Identities=19% Similarity=0.241 Sum_probs=83.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc-
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI- 84 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l- 84 (518)
....|..+-+.+||++|+-+-.+|.++...... +++. ....+.+++.+|.++.++|+...|.+.|++|.++
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l------~d~~--~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~kla 236 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL------KDWS--LKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLA 236 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc------Cchh--HHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHH
Confidence 345677788889999999999999998765432 1111 1123458999999999999999999999999887
Q ss_pred -----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 -----ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 -----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|.+......+|-+|...|+.+.|..-|++|.
T Consensus 237 l~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 237 LQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 24567778889999999999999999999998
No 244
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.91 E-value=0.039 Score=33.63 Aligned_cols=30 Identities=33% Similarity=0.582 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.+++++|.++..++++++|..+|++++ ..|
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 578999999999999999999999998 554
No 245
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.87 E-value=0.17 Score=48.77 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=62.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
-+++-|...++-|+|++|+..++.+....|.. .++.+.++.+++..++|++|+..+++.+ +.|++++.
T Consensus 36 ~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~ 107 (254)
T COG4105 36 ELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA 107 (254)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh
Confidence 78999999999999999999999999988754 6899999999999999999999999999 88887764
No 246
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.80 E-value=0.37 Score=56.59 Aligned_cols=94 Identities=7% Similarity=0.006 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHH----hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDL----CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~----~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
..+....+.+.+.|++++|.+.|.+.... .|+.. .|..+-.+|.+.|++++|++.++
T Consensus 543 vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------------------TynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------------------TVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------------------HHHHHHHHHHHCCCHHHHHHHHH
Confidence 34556667777778888888888777653 33321 45556666777777777777777
Q ss_pred HHHhcC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 80 QALKIE-SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 80 ~al~l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+.+.+ +.+...|..+..+|...|++++|++.|++..
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~ 641 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 777665 3455666667777777777777777777666
No 247
>PLN03218 maturation of RBCL 1; Provisional
Probab=94.76 E-value=0.36 Score=56.62 Aligned_cols=60 Identities=13% Similarity=0.078 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIE-SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|..+..++.+.|++++|++.++.+.+.. +.+...|..+..+|...|++++|.+.|++..
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~ 711 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIK 711 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34444444455555555555555544432 2234444455555555555555555555443
No 248
>PRK04841 transcriptional regulator MalT; Provisional
Probab=94.75 E-value=0.24 Score=57.46 Aligned_cols=97 Identities=14% Similarity=0.069 Sum_probs=77.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...|..++..|++++|...+.+++...+.... .....++.++|.++...|++++|...+++++....
T Consensus 456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~-------------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~ 522 (903)
T PRK04841 456 ALRAQVAINDGDPEEAERLAELALAELPLTWY-------------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMAR 522 (903)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccH-------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 34677888999999999999999986543211 01123678899999999999999999999997632
Q ss_pred C------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 87 S------HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 87 ~------~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
. ...++..+|.+++..|++++|...+++++
T Consensus 523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al 558 (903)
T PRK04841 523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAF 558 (903)
T ss_pred hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 1 13467788999999999999999999998
No 249
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.74 E-value=0.13 Score=57.93 Aligned_cols=119 Identities=6% Similarity=-0.025 Sum_probs=93.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...-+.+.+.|+.++|.+.|+...+..+-.+. . ..|..+..++.+.|++++|.+.+++. ..
T Consensus 428 T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~-----~-----------~~y~~li~~l~r~G~~~eA~~~~~~~-~~ 490 (697)
T PLN03081 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPR-----A-----------MHYACMIELLGREGLLDEAYAMIRRA-PF 490 (697)
T ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCC-----c-----------cchHhHHHHHHhcCCHHHHHHHHHHC-CC
Confidence 4556677888999999999999998864333222 0 16788889999999999999988764 34
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
.| +...|..+..++...|+++.|...+++.+ ..|++......+...+.+.++.++.
T Consensus 491 ~p-~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A 547 (697)
T PLN03081 491 KP-TVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEA 547 (697)
T ss_pred CC-CHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHH
Confidence 45 45678899999999999999999999999 7887777777777777777776654
No 250
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=94.67 E-value=1.1 Score=41.23 Aligned_cols=97 Identities=12% Similarity=0.068 Sum_probs=79.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
..-+..+++..|..+++.+|....+...+..|..-+ |+ ...-.|.++..+|++.+|...++.++
T Consensus 124 ~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~-----pd-----------~~Ll~aR~laa~g~~a~Aesafe~a~ 187 (251)
T COG4700 124 AAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS-----PD-----------GHLLFARTLAAQGKYADAESAFEVAI 187 (251)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC-----CC-----------chHHHHHHHHhcCCchhHHHHHHHHH
Confidence 456778899999999999999999999998876543 22 45566778889999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..-| .+.+..+.+.-+..+|+-++|...+....
T Consensus 188 ~~yp-g~~ar~~Y~e~La~qgr~~ea~aq~~~v~ 220 (251)
T COG4700 188 SYYP-GPQARIYYAEMLAKQGRLREANAQYVAVV 220 (251)
T ss_pred HhCC-CHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 9988 45666777888999999988887776554
No 251
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=0.29 Score=48.66 Aligned_cols=66 Identities=18% Similarity=0.310 Sum_probs=59.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
--+.+++-+.+-.|+|..|+.-.++|+.++|.+.. +++.-|.|++.+.+|.+|+.+|+..++
T Consensus 120 vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~K------------------a~~R~Akc~~eLe~~~~a~nw~ee~~~ 181 (390)
T KOG0551|consen 120 VLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLK------------------AYIRGAKCLLELERFAEAVNWCEEGLQ 181 (390)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhh------------------hhhhhhHHHHHHHHHHHHHHHHhhhhh
Confidence 34667888888999999999999999999999987 999999999999999999999999988
Q ss_pred cCCC
Q 035535 84 IESS 87 (518)
Q Consensus 84 l~p~ 87 (518)
++-.
T Consensus 182 ~d~e 185 (390)
T KOG0551|consen 182 IDDE 185 (390)
T ss_pred hhHH
Confidence 7643
No 252
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.61 E-value=0.35 Score=39.20 Aligned_cols=41 Identities=27% Similarity=0.297 Sum_probs=20.6
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 76 RDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 76 ~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..++++++.+|++..+.|.+|..+...|+|++|++.+-.++
T Consensus 9 ~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v 49 (90)
T PF14561_consen 9 AALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELV 49 (90)
T ss_dssp HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 34445555555555555555555555555555555555555
No 253
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.48 E-value=1.1 Score=43.36 Aligned_cols=60 Identities=18% Similarity=0.136 Sum_probs=55.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+...|.|++.+++|++|....+.||.-+++++..+-++-.+-..+|.-.++...+-.-+
T Consensus 209 llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 209 LLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 677899999999999999999999999999999999999999999999988887776666
No 254
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=94.34 E-value=0.25 Score=48.01 Aligned_cols=83 Identities=22% Similarity=0.185 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 53 SLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 53 ~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
.+.....|+=.++...++++.|+...++.+.++|.++.-+--+|.+|.++|.+.-|++++...+ ..|+++.. ..+...
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a-~~ir~~ 257 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIA-EMIRAQ 257 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHH-HHHHHH
Confidence 3444677888899999999999999999999999999999999999999999999999999988 77765543 445544
Q ss_pred HHHHH
Q 035535 132 LEKSK 136 (518)
Q Consensus 132 l~~~~ 136 (518)
+.+++
T Consensus 258 l~~l~ 262 (269)
T COG2912 258 LLELR 262 (269)
T ss_pred HHHHH
Confidence 44433
No 255
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.19 E-value=0.76 Score=43.96 Aligned_cols=103 Identities=17% Similarity=0.188 Sum_probs=70.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH---
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL--- 82 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al--- 82 (518)
-..++-...+.-+.++|++.|++++.+...... .++-.-.+...+.++.++..|.+|-..+.+-.
T Consensus 113 aleKAak~lenv~Pd~AlqlYqralavve~~dr------------~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~ 180 (308)
T KOG1585|consen 113 ALEKAAKALENVKPDDALQLYQRALAVVEEDDR------------DQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAA 180 (308)
T ss_pred HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccch------------HHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHH
Confidence 344555666777788888888888887654322 11222367788888999999998877666543
Q ss_pred -hcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHHhccc
Q 035535 83 -KIE--SSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQ 120 (518)
Q Consensus 83 -~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~ 120 (518)
+.+ |+-.+++...-.+++...+|..|..+|+..-..|+
T Consensus 181 ~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~ 221 (308)
T KOG1585|consen 181 DKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPA 221 (308)
T ss_pred HHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcc
Confidence 333 34456666666667777899999999998775554
No 256
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=94.15 E-value=1 Score=45.82 Aligned_cols=103 Identities=17% Similarity=0.221 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+....+.|-.-+-.|+|.+|.....++-+..+... ++|.--|.+--++|+++.|=.+..++-
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~------------------l~~l~aA~AA~qrgd~~~an~yL~eaa 145 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPV------------------LAYLLAAEAAQQRGDEDRANRYLAEAA 145 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchH------------------HHHHHHHHHHHhcccHHHHHHHHHHHh
Confidence 44556678888889999999999888654433221 277778888889999999999999999
Q ss_pred hcCC-CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 83 KIES-SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 83 ~l~p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+..+ +....+..++..+...|+|..|.....+++ ..|.++.
T Consensus 146 e~~~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~pr~~~ 188 (400)
T COG3071 146 ELAGDDTLAVELTRARLLLNRRDYPAARENVDQLLEMTPRHPE 188 (400)
T ss_pred ccCCCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHhCcCChH
Confidence 9943 345667888999999999999999999998 6665543
No 257
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.15 E-value=0.49 Score=47.47 Aligned_cols=61 Identities=11% Similarity=0.100 Sum_probs=45.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
.+|.+++..-.|.+|++.+.+++.-+|.....-..+|.||+.+.-|+-+.+.+.-.+ ..|+
T Consensus 156 SLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pd 217 (557)
T KOG3785|consen 156 SLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPD 217 (557)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCC
Confidence 344455555568888888888888888777766778888888888888888887777 5553
No 258
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.12 E-value=0.06 Score=51.70 Aligned_cols=66 Identities=20% Similarity=0.255 Sum_probs=59.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-.++.+-.+..+++|..|...|++.+..+|.++. +-.|.|.|++-+|+..+|++..+.+++.
T Consensus 254 V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~------------------a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 254 VLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAV------------------ANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred HHhhhhhheecccchHHHHHHHhhccccCCCchh------------------hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3566677778899999999999999999999876 8899999999999999999999999999
Q ss_pred CCCc
Q 035535 85 ESSH 88 (518)
Q Consensus 85 ~p~~ 88 (518)
+|..
T Consensus 316 ~P~~ 319 (366)
T KOG2796|consen 316 DPRH 319 (366)
T ss_pred CCcc
Confidence 9975
No 259
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=94.09 E-value=0.58 Score=52.82 Aligned_cols=97 Identities=6% Similarity=-0.029 Sum_probs=78.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
..|......+.+.|++++|++.|++.+... |+.. .|..+-.++.+.|..++|.+.++..
T Consensus 392 ~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~-------------------T~~~ll~a~~~~g~~~~a~~~f~~m 452 (697)
T PLN03081 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHV-------------------TFLAVLSACRYSGLSEQGWEIFQSM 452 (697)
T ss_pred eeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHH-------------------HHHHHHHHHhcCCcHHHHHHHHHHH
Confidence 357778889999999999999999988643 3321 6778888999999999999999999
Q ss_pred HhcCC--CchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 82 LKIES--SHFKALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 82 l~l~p--~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
.+..+ .+...|..+..+|...|++++|.+.+++.-..|
T Consensus 453 ~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p 492 (697)
T PLN03081 453 SENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKP 492 (697)
T ss_pred HHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCC
Confidence 76422 245678899999999999999999988764433
No 260
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.07 E-value=0.059 Score=51.09 Aligned_cols=61 Identities=13% Similarity=0.174 Sum_probs=55.2
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
.-+..++.-.+|..|+..+.+||.++|+.+..|.+++.+++.+.+++.+..+.++|+ ++|+
T Consensus 15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 345667777899999999999999999999999999999999999999999999999 7764
No 261
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=94.05 E-value=0.43 Score=47.40 Aligned_cols=98 Identities=15% Similarity=0.005 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHh
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALK 83 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~ 83 (518)
.|....+..-+.+..+.|-..|.+|+...+.... +|...|..-++ .++.+.|...++.+++
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~------------------vy~~~A~~E~~~~~d~~~A~~Ife~glk 64 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYH------------------VYVAYALMEYYCNKDPKRARKIFERGLK 64 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-TH------------------HHHHHHHHHHHTCS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHH------------------HHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 3556667777778899999999999843333333 78888888666 4666669999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
.-|.+...|..-..-+..+++.+.|...|++++ ..|.
T Consensus 65 ~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~ 102 (280)
T PF05843_consen 65 KFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPK 102 (280)
T ss_dssp HHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSC
T ss_pred HCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCc
Confidence 999999999999999999999999999999999 5543
No 262
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=93.90 E-value=0.25 Score=40.04 Aligned_cols=58 Identities=16% Similarity=0.010 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHH
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
.+.+.+|..++..|++++|++.+-.+++.++++ ..+.-.+-.++..+|.-+.-...|+
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~plv~~~R 82 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDPLVSEYR 82 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-HHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCChHHHHHH
Confidence 488999999999999999999999999999877 4444444445555554443333333
No 263
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.80 E-value=2.9 Score=40.16 Aligned_cols=97 Identities=12% Similarity=0.079 Sum_probs=66.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI--- 84 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l--- 84 (518)
.-++.+-..++|++|-.+..+|++...++.+ +=+. +-+|-..+...-.+..+.++...+++|..+
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrs-----lfhA-------AKayEqaamLake~~klsEvvdl~eKAs~lY~E 103 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRS-----LFHA-------AKAYEQAAMLAKELSKLSEVVDLYEKASELYVE 103 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhccc-----HHHH-------HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 3445555677899999988888876555432 0011 115566666777788999999999999876
Q ss_pred --CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 --ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 --~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|+-+-.-.-++--....-+.++|++.|++++
T Consensus 104 ~GspdtAAmaleKAak~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 104 CGSPDTAAMALEKAAKALENVKPDDALQLYQRAL 137 (308)
T ss_pred hCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Confidence 34444444444444556678999999999998
No 264
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=93.76 E-value=0.42 Score=37.34 Aligned_cols=67 Identities=16% Similarity=0.153 Sum_probs=54.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+....++|-.+|.+.+.++|+..++++++..++.+. .-.++.-+..+|...|+|.+.++++.+=+
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---------------rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRED---------------RFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHH---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455678999999999999999999999998776432 22377788899999999999999877655
Q ss_pred hc
Q 035535 83 KI 84 (518)
Q Consensus 83 ~l 84 (518)
++
T Consensus 71 ~~ 72 (80)
T PF10579_consen 71 EI 72 (80)
T ss_pred HH
Confidence 54
No 265
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.51 E-value=1.5 Score=41.64 Aligned_cols=92 Identities=24% Similarity=0.238 Sum_probs=57.3
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHhcC------
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALKIE------ 85 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~l~------ 85 (518)
.|++++..+|+.+..++|++..+...- ++-+-.+..+|..|-. +.++++|+..|++|-+.-
T Consensus 83 cykk~~~~eAv~cL~~aieIyt~~Grf------------~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ 150 (288)
T KOG1586|consen 83 CYKKVDPEEAVNCLEKAIEIYTDMGRF------------TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESV 150 (288)
T ss_pred HhhccChHHHHHHHHHHHHHHHhhhHH------------HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhh
Confidence 345566777777777777765543220 0011134455666644 377888888888887652
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..--|.+..-+.--..+++|.+|+..|++..
T Consensus 151 ssANKC~lKvA~yaa~leqY~~Ai~iyeqva 181 (288)
T KOG1586|consen 151 SSANKCLLKVAQYAAQLEQYSKAIDIYEQVA 181 (288)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2224566666666677888888888888877
No 266
>PLN03077 Protein ECB2; Provisional
Probab=93.49 E-value=0.36 Score=55.85 Aligned_cols=117 Identities=6% Similarity=-0.057 Sum_probs=90.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...-..+.+.|++++|...|+...+..+-.+. . ..|..+..++.+.|++++|.+.+++. .+.|
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-----~-----------~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~p 655 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEEKYSITPN-----L-----------KHYACVVDLLGRAGKLTEAYNFINKM-PITP 655 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHHHhCCCCc-----h-----------HHHHHHHHHHHhCCCHHHHHHHHHHC-CCCC
Confidence 33445678899999999999999855443332 1 17888999999999999999999875 4566
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
+ +..|-.+-.++..-++.+.|....++++ ..|+++.....+..++...++.++.
T Consensus 656 d-~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 656 D-PAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred C-HHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 4 5667777778888899999999999999 8898888877777777766665543
No 267
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=93.45 E-value=0.23 Score=52.73 Aligned_cols=101 Identities=16% Similarity=0.123 Sum_probs=83.5
Q ss_pred HHHHHHH-hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 8 SKATELL-LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 8 ~~Gn~~~-~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
..+..|+ .+|+..+|+.+|..|+-..|.... -+++..+|.++.+.|...+|--.+..|+.--|
T Consensus 217 ~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k----------------di~lLSlaTiL~RaG~sadA~iILhAA~~dA~ 280 (886)
T KOG4507|consen 217 NMASFYWRIKGEPYQAVECAMRALHFSSRHNK----------------DIALLSLATVLHRAGFSADAAVILHAALDDAD 280 (886)
T ss_pred HHHHHHHHHcCChhhhhHHHHHHhhhCCcccc----------------cchhhhHHHHHHHcccccchhheeehhccCCc
Confidence 3444444 478999999999999999887654 13788999999999999999888888888878
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
....-+|-+|.++..++.|.....+|..+. ..|...+.
T Consensus 281 ~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~~p~f~q~ 319 (886)
T KOG4507|consen 281 FFTSNYYTLGNIYAMLGEYNHSVLCYDHALQARPGFEQA 319 (886)
T ss_pred cccccceeHHHHHHHHhhhhhhhhhhhhhhccCcchhHH
Confidence 777779999999999999999999999998 66554433
No 268
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=93.36 E-value=0.52 Score=49.44 Aligned_cols=62 Identities=18% Similarity=0.123 Sum_probs=49.5
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 54 LCLALSNRAEARSRLRDFDNALRDCEQALKIESS--HFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 54 l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
+.-+...+|.|..++|+.++|++.+...++..|. +...++++-.+|+.++.|.++...+.+.
T Consensus 258 ~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 258 LVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3345667888888889999999988888877664 5668888888889999888888777764
No 269
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=93.27 E-value=0.12 Score=48.69 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=54.0
Q ss_pred HHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 64 ARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 64 a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
...+.++.+.|.+.+.+|+++-|.+...|+|+|......|+++.|.+.|++.+ ++|.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 45567899999999999999999999999999999999999999999999999 777554
No 270
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=92.99 E-value=0.097 Score=54.34 Aligned_cols=94 Identities=9% Similarity=-0.039 Sum_probs=69.0
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHH-HhhcccchhhhhhHHHHHHH-HHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 6 LRSKATELLLREEWKESVQVYTQFID-LCQSQITETKQEASQLSKLK-KSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~-~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
|.+.|-++|+.|.|..++.+|.+||+ .+..-.. ...+...+.+. .-.+.+++|.|..|+..|++-.|.+.+.++..
T Consensus 286 ~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~--g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 286 NNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRN--GLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred ecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhc--cCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 56789999999999999999999996 2211100 00000000000 00123899999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHh
Q 035535 84 IESSHFKALLCKGKILLS 101 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~ 101 (518)
.--.+|..|.|+|.|...
T Consensus 364 vfh~nPrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRNPRLWLRLAECCIM 381 (696)
T ss_pred HHhcCcHHHHHHHHHHHH
Confidence 988899999999988754
No 271
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=92.87 E-value=0.19 Score=33.52 Aligned_cols=28 Identities=39% Similarity=0.430 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
++.|+|.+|..+|+|++|+..+++++++
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 6778888888888888888888887765
No 272
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.86 E-value=4.1 Score=36.61 Aligned_cols=111 Identities=14% Similarity=-0.033 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+........++.+++...+...-.+.|..+. +-.--|..++..|+|.+|+..++.+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e------------------~~~~~~~l~i~r~~w~dA~rlLr~l~ 71 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPE------------------LDLFDGWLHIVRGDWDDALRLLRELE 71 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 345677778888889999999999888788888876 66667888999999999999999998
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l 132 (518)
+-.|..+-+--.++.|++.+++.+-=.. -.+++..+.++.....+..++
T Consensus 72 ~~~~~~p~~kALlA~CL~~~~D~~Wr~~-A~evle~~~d~~a~~Lv~~Ll 120 (160)
T PF09613_consen 72 ERAPGFPYAKALLALCLYALGDPSWRRY-ADEVLESGADPDARALVRALL 120 (160)
T ss_pred ccCCCChHHHHHHHHHHHHcCChHHHHH-HHHHHhcCCChHHHHHHHHHH
Confidence 8888888666677899999998875332 334554443555433333333
No 273
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=92.72 E-value=4.1 Score=40.32 Aligned_cols=133 Identities=15% Similarity=0.086 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH---HHHHH
Q 035535 3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN---ALRDC 78 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~---Al~~~ 78 (518)
+..+.+-|..+++++ +|++|+...++|+++..........+++ ...+...++..++.+|+..+.++. |....
T Consensus 35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~----~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l 110 (278)
T PF08631_consen 35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPD----GSELRLSILRLLANAYLEWDTYESVEKALNAL 110 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCc----HHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 456788999999999 9999999999999996431110111111 222344588889999999887654 33333
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHHHH
Q 035535 79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
+.+-.--|+.+..++-.=.++...++.+++.+.+.+.+...+.++ ..+...+...+++.+.
T Consensus 111 ~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~~~e--~~~~~~l~~i~~l~~~ 171 (278)
T PF08631_consen 111 RLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVDHSE--SNFDSILHHIKQLAEK 171 (278)
T ss_pred HHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhccccc--chHHHHHHHHHHHHhh
Confidence 333334577777776666777778999999999999995433232 2344445555554433
No 274
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=92.65 E-value=1 Score=36.70 Aligned_cols=69 Identities=20% Similarity=0.228 Sum_probs=50.0
Q ss_pred HHhccCHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535 65 RSRLRDFDNALRDCEQALKIES---------SHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLE 133 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p---------~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~ 133 (518)
.++.++|.+|++.+.+.+..-. ...-++..+|.++...|++++|+..+++++..-....+...+...+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHH
Confidence 4678999999998888886532 13467889999999999999999999999933222333344444433
No 275
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=92.35 E-value=0.78 Score=45.20 Aligned_cols=67 Identities=21% Similarity=0.191 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 50 LKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 50 ~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+......++..++..+...++++.++...++.+.++|-+.++|.++-.+|+..|+...|+..|++.-
T Consensus 148 l~e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 148 LEELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 4555677899999999999999999999999999999999999999999999999999999999876
No 276
>PLN03077 Protein ECB2; Provisional
Probab=92.31 E-value=2 Score=49.74 Aligned_cols=97 Identities=10% Similarity=0.116 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH--hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDL--CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~--~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
...|......+.+.|+.++|++.|++..+. .|+.. .|..+-.++.+.|.+++|++.++.
T Consensus 554 ~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~-------------------T~~~ll~a~~~~g~v~ea~~~f~~ 614 (857)
T PLN03077 554 VVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV-------------------TFISLLCACSRSGMVTQGLEYFHS 614 (857)
T ss_pred hhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc-------------------cHHHHHHHHhhcChHHHHHHHHHH
Confidence 345888889999999999999999998864 34432 455566778899999999999999
Q ss_pred HHhc---CCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 81 ALKI---ESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 81 al~l---~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
..+. .| +...|..+..+|.+.|++++|.+.+++.-..|
T Consensus 615 M~~~~gi~P-~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~p 655 (857)
T PLN03077 615 MEEKYSITP-NLKHYACVVDLLGRAGKLTEAYNFINKMPITP 655 (857)
T ss_pred HHHHhCCCC-chHHHHHHHHHHHhCCCHHHHHHHHHHCCCCC
Confidence 8843 34 56789999999999999999999998864444
No 277
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=92.24 E-value=1.2 Score=37.81 Aligned_cols=83 Identities=17% Similarity=0.103 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH--
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA-- 81 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a-- 81 (518)
+.+...|+.+++.+++-.||-+|++|+.+..+... .+..+.+++.-.......|+|.-+..+|+.+-.+++++-|
T Consensus 2 e~htllAd~a~~~~~~l~si~hYQqAls~se~~~~---~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE 78 (140)
T PF10952_consen 2 EKHTLLADQAFKEADPLRSILHYQQALSLSEEIDE---SNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASE 78 (140)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcc---cccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHH
Confidence 45678999999999999999999999998765432 1122334444455667889999999999999999987655
Q ss_pred --HhcCCCch
Q 035535 82 --LKIESSHF 89 (518)
Q Consensus 82 --l~l~p~~~ 89 (518)
+.+-|.-+
T Consensus 79 ~VltLiPQCp 88 (140)
T PF10952_consen 79 KVLTLIPQCP 88 (140)
T ss_pred HHHHhccCCC
Confidence 44555543
No 278
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=92.10 E-value=1.8 Score=36.75 Aligned_cols=70 Identities=17% Similarity=0.078 Sum_probs=53.2
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.++..+...|+|++++..-.+||.+.....+.+ ++-.++...+-++||.++-.+|+.++|+..++.+-++
T Consensus 60 ~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~-------qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM 129 (144)
T PF12968_consen 60 GLSGALAGLGRYDECLQSADRALRYFNRRGELH-------QDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM 129 (144)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TT-------STHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHhhccccc-------cccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence 456677889999999999999999876554322 2233456678999999999999999999999988664
No 279
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.08 E-value=0.99 Score=45.08 Aligned_cols=34 Identities=18% Similarity=0.263 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhccc
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQI 37 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~ 37 (518)
+.....+..++.+|++.+|...+.+.|+-.|.+.
T Consensus 104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d~PtDl 137 (491)
T KOG2610|consen 104 EKRHAKAAILWGRGKHHEAAIEWDKLLDDYPTDL 137 (491)
T ss_pred HhhhhhHHHhhccccccHHHHHHHHHHHhCchhh
Confidence 4556677888999999999999999999888764
No 280
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.00 E-value=1.3 Score=44.20 Aligned_cols=52 Identities=19% Similarity=0.137 Sum_probs=25.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHH
Q 035535 61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCF 112 (518)
Q Consensus 61 ra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~ 112 (518)
.|.++...|-|++|.+.+++|+++||.+.-+...++.++...+++.++.+..
T Consensus 181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM 232 (491)
T KOG2610|consen 181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFM 232 (491)
T ss_pred HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHH
Confidence 4444444555555555555555555555444444555555555555544443
No 281
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=91.95 E-value=1.4 Score=46.40 Aligned_cols=92 Identities=13% Similarity=0.046 Sum_probs=63.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-----HHhccCHHHHHHHHHHHHhc
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-----RSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-----~~~lg~~~~Al~~~~~al~l 84 (518)
-..+.+..+.+.-|+.-.+||+++|+.+. +|.-+|.= .-...-|.+|++..+..+..
T Consensus 175 Mq~AWRERnp~aRIkaA~eALei~pdCAd------------------AYILLAEEeA~Ti~Eae~l~rqAvkAgE~~lg~ 236 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALEINPDCAD------------------AYILLAEEEASTIVEAEELLRQAVKAGEASLGK 236 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHHhhhhhhH------------------HHhhcccccccCHHHHHHHHHHHHHHHHHhhch
Confidence 45567888999999999999999998765 44444431 11222244455555544443
Q ss_pred CC----------------C--chHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 85 ES----------------S--HFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 85 ~p----------------~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+. . ..-+..++|.+...+|+.++|++.|+..+ ..|
T Consensus 237 s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p 290 (539)
T PF04184_consen 237 SQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP 290 (539)
T ss_pred hhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC
Confidence 21 1 13455789999999999999999999999 455
No 282
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.72 E-value=0.79 Score=49.04 Aligned_cols=85 Identities=12% Similarity=0.134 Sum_probs=71.0
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC----chHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS----HFKA 91 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~----~~ka 91 (518)
..+.+.|.+.........|+..- .++..|..+...|+.++|++.+++++..... +.-.
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~l------------------fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~ 307 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSAL------------------FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLC 307 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHH
Confidence 44567788888888888887654 8899999999999999999999999965443 3346
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
+|.+|.++..+++|++|.++|.+....
T Consensus 308 ~~El~w~~~~~~~w~~A~~~f~~L~~~ 334 (468)
T PF10300_consen 308 YFELAWCHMFQHDWEEAAEYFLRLLKE 334 (468)
T ss_pred HHHHHHHHHHHchHHHHHHHHHHHHhc
Confidence 899999999999999999999998854
No 283
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=91.65 E-value=0.89 Score=47.40 Aligned_cols=128 Identities=12% Similarity=0.196 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC---HHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD---FDNALRDCEQ 80 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~---~~~Al~~~~~ 80 (518)
....+.|..++..|+|.+|+..|+..|...|-... .+.++..+.++++.++.--.-...+.+.+ .+...++.++
T Consensus 205 ~~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv---~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR 281 (422)
T PF06957_consen 205 EERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVV---ESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKR 281 (422)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--B---SSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeee---cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHH
Confidence 34456899999999999999999999998876544 23334444555554443333333333221 1122233333
Q ss_pred HH---------hcCCCchHHHHHHHHH-HHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 81 AL---------KIESSHFKALLCKGKI-LLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 81 al---------~l~p~~~ka~~~~g~a-l~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
.+ ++.|.|...-+|.|.. .++.++|..|...-++.| +.|. +...+..++++..|
T Consensus 282 ~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~-~~~a~qArKil~~~ 346 (422)
T PF06957_consen 282 NLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPS-PEVAEQARKILQAC 346 (422)
T ss_dssp HHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--S-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH
Confidence 33 3466666655566554 468899999999999999 6552 22223344444433
No 284
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.58 E-value=1.6 Score=45.47 Aligned_cols=91 Identities=16% Similarity=0.158 Sum_probs=63.2
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF 89 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ 89 (518)
+.-..++.+...|....-.||..+|.+. ++-..-..-+++++|+.+-..+++-|+.+|.+-
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK~K-------------------lFk~YIelElqL~efDRcRkLYEkfle~~Pe~c 471 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPKDK-------------------LFKGYIELELQLREFDRCRKLYEKFLEFSPENC 471 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCchh-------------------HHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhh
Confidence 3333444555555555555555555432 222333445667888888888888888888888
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
.+|...|..-..||+.+.|...|.-|+..|
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp 501 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQP 501 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCc
Confidence 888888888888899998888888888554
No 285
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=91.34 E-value=0.44 Score=31.65 Aligned_cols=33 Identities=9% Similarity=0.256 Sum_probs=27.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
+..+.+.|..+...|+|++|+.++.+++.+...
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 34 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRER 34 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHH
Confidence 567889999999999999999999999987543
No 286
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.11 E-value=5.1 Score=41.98 Aligned_cols=99 Identities=16% Similarity=0.048 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..|...|.=-..++++..|...|.+||..+..+.. +|...+.+-++......|-...++|+
T Consensus 73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd~r~it------------------LWlkYae~Emknk~vNhARNv~dRAv 134 (677)
T KOG1915|consen 73 MQVWIKYAQWEESQKEIQRARSVFERALDVDYRNIT------------------LWLKYAEFEMKNKQVNHARNVWDRAV 134 (677)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcccccch------------------HHHHHHHHHHhhhhHhHHHHHHHHHH
Confidence 345555666666788999999999999998877665 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.+-|.--+.||..-..-..+|+..-|.+.|++=+ -.|
T Consensus 135 t~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~~w~P 172 (677)
T KOG1915|consen 135 TILPRVDQLWYKYIYMEEMLGNIAGARQIFERWMEWEP 172 (677)
T ss_pred HhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHHcCCC
Confidence 9999999999988888889999999999999988 555
No 287
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.79 E-value=3.5 Score=41.83 Aligned_cols=98 Identities=19% Similarity=0.079 Sum_probs=68.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhccc-chh-hhh--------------hHHHHHHHHHHHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQI-TET-KQE--------------ASQLSKLKKSLCLALSNRAEARSRL 68 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~-~~~-~~~--------------~~~~~~~~~~l~~~~~nra~a~~~l 68 (518)
-..+.+..+...|+..+|+......+....... .+. ... ...........+.++.-+|.-...+
T Consensus 186 v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~ 265 (352)
T PF02259_consen 186 VFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDEL 265 (352)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhh
Confidence 345677888899999999999988887222211 000 000 0001112233445777888877777
Q ss_pred ------cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 035535 69 ------RDFDNALRDCEQALKIESSHFKALLCKGKILLSL 102 (518)
Q Consensus 69 ------g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~l 102 (518)
+.+++++..+..|++++|++.++|+..|..+..+
T Consensus 266 ~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 266 YSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL 305 (352)
T ss_pred ccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999887755
No 288
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=90.32 E-value=2 Score=49.46 Aligned_cols=99 Identities=14% Similarity=0.106 Sum_probs=78.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-------cCHHHHHHHHHHHH
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-------RDFDNALRDCEQAL 82 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-------g~~~~Al~~~~~al 82 (518)
.++++..+.|++|+..|++.-...|...+. ..+.+..|.+.+.. ..|.+|+..+++.
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 545 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKEG---------------YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL- 545 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCcccc---------------hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-
Confidence 467788999999999999999998876541 11677777776653 2477777777663
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.-.|.-+--|.-+|.+|..+|+|++-+++|.-|+ ..|++|.-
T Consensus 546 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 588 (932)
T PRK13184 546 HGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEI 588 (932)
T ss_pred cCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCcc
Confidence 4456677789999999999999999999999999 88888865
No 289
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=90.17 E-value=1.3 Score=38.49 Aligned_cols=76 Identities=21% Similarity=0.163 Sum_probs=54.4
Q ss_pred HHHHHHHHHHhcc---CHHHHHHHHHHHHh-cCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 57 ALSNRAEARSRLR---DFDNALRDCEQALK-IESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 57 ~~~nra~a~~~lg---~~~~Al~~~~~al~-l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
..+|+|-++.+.. +-.+.+..++..++ -+|. .-..+|.++..++++++|+.|+++.+..+ ..|++++. ..+.+
T Consensus 34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa-~~Lk~ 112 (149)
T KOG3364|consen 34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQA-LELKE 112 (149)
T ss_pred HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHH-HHHHH
Confidence 5677777777765 45677888888886 4443 34577889999999999999999999888 67665544 33444
Q ss_pred HHH
Q 035535 131 FLE 133 (518)
Q Consensus 131 ~l~ 133 (518)
.++
T Consensus 113 ~ie 115 (149)
T KOG3364|consen 113 TIE 115 (149)
T ss_pred HHH
Confidence 443
No 290
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=90.15 E-value=2.8 Score=49.16 Aligned_cols=93 Identities=12% Similarity=0.009 Sum_probs=60.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC--
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS-- 87 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-- 87 (518)
...|-+.+++++|.++|++-+....+... .|...+..+++.++-++|...+.+||+.=|.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KKF~q~~~------------------vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKKFGQTRK------------------VWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHHhcchhh------------------HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 34445556666666666666665443222 6777777777777777777777777777665
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
|.+..-..|..-+..|+.+.+...|+-.+ ..|.
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK 1632 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK 1632 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc
Confidence 66666666777777777777777777666 4443
No 291
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=89.93 E-value=5.4 Score=39.47 Aligned_cols=90 Identities=12% Similarity=0.185 Sum_probs=68.2
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhc----CC-
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKI----ES- 86 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l----~p- 86 (518)
+.++|+++.|...|.|+=...+ ... |+ ....++..++|.|...++.+ +|+.|+..+++|.++ .+
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~-~~~-----~~----~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~ 72 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLN-SLD-----PD----MAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKM 72 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHh-cCC-----cH----HHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhc
Confidence 4678999999999999987764 111 11 23456779999999999999 999999999999987 22
Q ss_pred --C-------chHHHHHHHHHHHhccChHHHHHHH
Q 035535 87 --S-------HFKALLCKGKILLSLNRYSMALDCF 112 (518)
Q Consensus 87 --~-------~~ka~~~~g~al~~lg~~~~A~~~~ 112 (518)
. ..+.+..++.+|+..+.++...++.
T Consensus 73 ~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~ 107 (278)
T PF08631_consen 73 DKLSPDGSELRLSILRLLANAYLEWDTYESVEKAL 107 (278)
T ss_pred cccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 1 2456777888999888876554433
No 292
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=89.00 E-value=3 Score=36.26 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=34.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
+.+-+|..+.++++|+.++.+++..++.+|+|.++.--+
T Consensus 73 ~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~Lk 111 (149)
T KOG3364|consen 73 CLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALELK 111 (149)
T ss_pred hhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHHH
Confidence 567789999999999999999999999999998876433
No 293
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.90 E-value=0.18 Score=50.24 Aligned_cols=57 Identities=12% Similarity=0.197 Sum_probs=52.0
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
.+..|++++|++.+..||+++|.....|-.+|.+++.+++...|++++..++ +.|+.
T Consensus 124 Aln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Ds 181 (377)
T KOG1308|consen 124 ALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDS 181 (377)
T ss_pred HhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccc
Confidence 4557889999999999999999999999999999999999999999999999 55543
No 294
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=88.79 E-value=4.9 Score=42.37 Aligned_cols=87 Identities=9% Similarity=0.075 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 035535 21 ESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILL 100 (518)
Q Consensus 21 ~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~ 100 (518)
.-...|++|+...+.+.. +|++...-.-+.+.+.+--..|.+++..+|+++..|..-|.=.+
T Consensus 89 rIv~lyr~at~rf~~D~~------------------lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wef 150 (568)
T KOG2396|consen 89 RIVFLYRRATNRFNGDVK------------------LWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEF 150 (568)
T ss_pred HHHHHHHHHHHhcCCCHH------------------HHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHH
Confidence 346678888888877655 78877766666777999999999999999999999999998888
Q ss_pred hccC-hHHHHHHHHHHH-hccccCCcH
Q 035535 101 SLNR-YSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 101 ~lg~-~~~A~~~~~~al-~~p~~~~~~ 125 (518)
..+. .+.|.+.|.+++ ..|+.|.-+
T Consensus 151 e~n~ni~saRalflrgLR~npdsp~Lw 177 (568)
T KOG2396|consen 151 EINLNIESARALFLRGLRFNPDSPKLW 177 (568)
T ss_pred hhccchHHHHHHHHHHhhcCCCChHHH
Confidence 8876 999999999999 777666544
No 295
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=88.08 E-value=7.5 Score=38.51 Aligned_cols=97 Identities=11% Similarity=-0.048 Sum_probs=71.0
Q ss_pred HHHHHHHHHHh-hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 5 QLRSKATELLL-REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 5 ~l~~~Gn~~~~-~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
-+..-|..-+. .++.+.|...|+.++...|.+.. +|.....-+.++++.+.|...+++++.
T Consensus 37 vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~------------------~~~~Y~~~l~~~~d~~~aR~lfer~i~ 98 (280)
T PF05843_consen 37 VYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD------------------FWLEYLDFLIKLNDINNARALFERAIS 98 (280)
T ss_dssp HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH------------------HHHHHHHHHHHTT-HHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 34455555555 56777799999999999998876 788888888999999999999999999
Q ss_pred cCCCch---HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 84 IESSHF---KALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 84 l~p~~~---ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
.-|... ..|-+...--...|+.+......+++. ..|
T Consensus 99 ~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~ 138 (280)
T PF05843_consen 99 SLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFP 138 (280)
T ss_dssp TSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTT
T ss_pred hcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhh
Confidence 866554 344455555566688888888877777 444
No 296
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=87.52 E-value=2.8 Score=40.93 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=63.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.+.=..+...++|+.|...-.+.+.++|.++. -+--||.+|.++|-+.-|++|+...++.-|
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~------------------eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDPY------------------EIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCChh------------------hccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34456677899999999999999999999876 567899999999999999999999999999
Q ss_pred CchHHHHHHHHH
Q 035535 87 SHFKALLCKGKI 98 (518)
Q Consensus 87 ~~~ka~~~~g~a 98 (518)
+.+.+-.-++..
T Consensus 247 ~~~~a~~ir~~l 258 (269)
T COG2912 247 DDPIAEMIRAQL 258 (269)
T ss_pred CchHHHHHHHHH
Confidence 888776555443
No 297
>KOG1081 consensus Transcription factor NSD1 and related SET domain proteins [Transcription]
Probab=87.18 E-value=0.26 Score=52.32 Aligned_cols=42 Identities=40% Similarity=0.725 Sum_probs=35.0
Q ss_pred ccccCCCCCCceEE---eeC-CEEEEEEcCCCCCCCeEEeecCCCC
Q 035535 317 SFINHSCSPNARRV---HVG-DYIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 317 s~~NHsC~PN~~~~---~~~-~~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
.++||||.||+.-. ..+ .++.+.|.+.|+.|+|+|++|....
T Consensus 373 r~~nh~~~~~v~~~k~~~~~~t~~~~~a~~~i~~g~e~t~~~n~~~ 418 (463)
T KOG1081|consen 373 RFLNHSCQPNVETEKWQVIGDTRVGLFAPRQIEAGEELTFNYNGNC 418 (463)
T ss_pred hhhcccCCCceeechhheecccccccccccccccchhhhheeeccc
Confidence 58899999999754 233 4789999999999999999997653
No 298
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=86.88 E-value=3.7 Score=32.05 Aligned_cols=34 Identities=18% Similarity=0.067 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+-.+..++..+=+.|+|++|+.+|.+||++.-.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 3556777888888999999999999999987644
No 299
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=86.81 E-value=1.1 Score=29.82 Aligned_cols=28 Identities=29% Similarity=0.398 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
+|..+|.+-+..++|++|+.|+.+++++
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i 30 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEI 30 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 5667777777777888888888877765
No 300
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=86.70 E-value=15 Score=34.26 Aligned_cols=96 Identities=22% Similarity=0.248 Sum_probs=65.8
Q ss_pred hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHH------HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-ch
Q 035535 17 EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKS------LCLALSNRAEARSRLRDFDNALRDCEQALKIESS-HF 89 (518)
Q Consensus 17 g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~------l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-~~ 89 (518)
++..+|-..|.+++........ .....++++... -.++-..+|.++...+++++|+..++.++....+ +.
T Consensus 48 ~q~~~AS~~Y~~~i~~~~ak~~---~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l 124 (207)
T COG2976 48 EQAQEASAQYQNAIKAVQAKKP---KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENL 124 (207)
T ss_pred HHHHHHHHHHHHHHHHHhcCCc---hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHH
Confidence 3455888889999876532211 111122222221 1235567788889999999999999999976543 44
Q ss_pred H--HHHHHHHHHHhccChHHHHHHHHHH
Q 035535 90 K--ALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 90 k--a~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
+ +-.|+|++++.+|.+++|+..+...
T Consensus 125 k~l~~lRLArvq~q~~k~D~AL~~L~t~ 152 (207)
T COG2976 125 KALAALRLARVQLQQKKADAALKTLDTI 152 (207)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence 4 4579999999999999999887654
No 301
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=86.13 E-value=5.5 Score=44.77 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=64.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.-+|-.+++.|++++|..+. +++..-+.+.. ..+.-+..||..++++++|+..+++++..+|
T Consensus 47 vLkaLsl~r~gk~~ea~~~L-e~~~~~~~~D~-----------------~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 47 VLKALSLFRLGKGDEALKLL-EALYGLKGTDD-----------------LTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHHHhcCchhHHHHH-hhhccCCCCch-----------------HHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 34677889999999999544 44443332211 1566778899999999999999999999999
Q ss_pred CchHHHHHHHHHHHhccChHH
Q 035535 87 SHFKALLCKGKILLSLNRYSM 107 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~ 107 (518)
+ .+.++.+-.+|.+.+.|.+
T Consensus 109 ~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHH
Confidence 8 8888888899998888864
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=85.83 E-value=1.1 Score=26.98 Aligned_cols=23 Identities=22% Similarity=0.154 Sum_probs=12.5
Q ss_pred HHHHHHHHHHhccChHHHHHHHH
Q 035535 91 ALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~ 113 (518)
+++.+|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 44555555555555555555443
No 303
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=85.78 E-value=14 Score=38.01 Aligned_cols=115 Identities=15% Similarity=0.129 Sum_probs=79.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh-----cc------cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ-----SQ------ITETKQEASQLSKLKKSLCLALSNRAEARSRLRD 70 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p-----~~------~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~ 70 (518)
+++.+.+.+..+..+|+++.|.+..++||-... .. ...+....+-....-+.+.++++.....+.+.|-
T Consensus 39 HidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~ 118 (360)
T PF04910_consen 39 HIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGC 118 (360)
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCc
Confidence 467888999999999999999999999985432 11 0000000000011123456688888999999999
Q ss_pred HHHHHHHHHHHHhcCCC-chH-HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 71 FDNALRDCEQALKIESS-HFK-ALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p~-~~k-a~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+..|++.|+-.+.+||. ++- +++.+-......++|+--++.++...
T Consensus 119 ~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 119 WRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 99999999999999998 543 45555555556677776666655543
No 304
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.47 E-value=22 Score=32.52 Aligned_cols=106 Identities=16% Similarity=0.067 Sum_probs=74.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH-h
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL-K 83 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al-~ 83 (518)
.....|....++|+-..|+..|+.+-.-.|-... ..+ ++...-|..+...|.|++...-.+..- .
T Consensus 96 A~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~-----~rd---------~ARlraa~lLvD~gsy~dV~srvepLa~d 161 (221)
T COG4649 96 ARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQI-----GRD---------LARLRAAYLLVDNGSYDDVSSRVEPLAGD 161 (221)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHhccCCCcch-----hhH---------HHHHHHHHHHhccccHHHHHHHhhhccCC
Confidence 3456778888999999999999887654332111 011 266677788888899988766554321 2
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS 124 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~ 124 (518)
-+|-...+.--+|.+-+..|+|..|...|.+...+.+.|.+
T Consensus 162 ~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~aprn 202 (221)
T COG4649 162 GNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPRN 202 (221)
T ss_pred CChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcHH
Confidence 34555667778899999999999999999988866545544
No 305
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=85.31 E-value=5 Score=38.09 Aligned_cols=74 Identities=15% Similarity=0.088 Sum_probs=48.8
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch-HH
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF-KA 91 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~-ka 91 (518)
.....=+..|++.|.+|+........ +.+. ..+.+-+|....++|++++|+..+.+++.....+. ..
T Consensus 135 ~~E~~fl~~Al~~y~~a~~~e~~~~~-~~~~-----------~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~ 202 (214)
T PF09986_consen 135 ENEKRFLRKALEFYEEAYENEDFPIE-GMDE-----------ATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPK 202 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHhCcCCCC-CchH-----------HHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHH
Confidence 33344467788888888776533111 0111 12788899999999999999999999998754333 35
Q ss_pred HHHHHHH
Q 035535 92 LLCKGKI 98 (518)
Q Consensus 92 ~~~~g~a 98 (518)
+..+|+-
T Consensus 203 l~~~AR~ 209 (214)
T PF09986_consen 203 LKDMARD 209 (214)
T ss_pred HHHHHHH
Confidence 5555543
No 306
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=85.31 E-value=3.9 Score=42.57 Aligned_cols=73 Identities=18% Similarity=0.107 Sum_probs=56.7
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHH
Q 035535 62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~ 137 (518)
|+-++..|+|.+|.-++.-..+++| .+.+|--+|.+++...+|++|..++...- |++.-....+.+.+.-|.+
T Consensus 469 AEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP--~n~~~~dskvqKAl~lCqK 541 (549)
T PF07079_consen 469 AEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP--PNERMRDSKVQKALALCQK 541 (549)
T ss_pred HHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC--CchhhHHHHHHHHHHHHHH
Confidence 4557789999999999999999999 99999999999999999999999987642 2222222445555555544
No 307
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=85.02 E-value=6.2 Score=30.68 Aligned_cols=62 Identities=8% Similarity=0.118 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhH-HHHHHHHHHHHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEAS-QLSKLKKSLCLALSNRAEARS 66 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~-~~~~~~~~l~~~~~nra~a~~ 66 (518)
.+..+-.++..+=+.|++.+|+.+|++||++.-..... .|+ ......+....=|.+|+..+-
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~---~pD~~~k~~yr~ki~eY~~Rae~Lk 67 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKN---YPDSPTRLIYEQMINEYKRRIEVLE 67 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHh---CCChHHHHHHHHHHHHHHHHHHHHH
Confidence 45667778888899999999999999999875332210 000 112233344445666666643
No 308
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=84.77 E-value=4.8 Score=39.62 Aligned_cols=95 Identities=12% Similarity=0.064 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHhhccc--chhhhhhHHHH-HHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535 22 SVQVYTQFIDLCQSQI--TETKQEASQLS-KLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI 98 (518)
Q Consensus 22 Ai~~y~~Al~~~p~~~--~~~~~~~~~~~-~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a 98 (518)
-++.+.+.+.....+. +...++.++.. .+..+....+.-.+..|+..|.|.+|++.+++++.+||-+...+.-+-.+
T Consensus 243 tide~kelv~~ykgdyl~e~~y~Waedererle~ly~kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~ 322 (361)
T COG3947 243 TIDELKELVGQYKGDYLPEADYPWAEDERERLEQLYMKLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMAS 322 (361)
T ss_pred CHHHHHHHHHHhcCCcCCccccccccchHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHH
Confidence 3555555555543221 11233444332 34444444566678889999999999999999999999999999999999
Q ss_pred HHhccChHHHHHHHHHHH
Q 035535 99 LLSLNRYSMALDCFKETL 116 (518)
Q Consensus 99 l~~lg~~~~A~~~~~~al 116 (518)
|..+|+--.|...|++.-
T Consensus 323 la~~gD~is~~khyerya 340 (361)
T COG3947 323 LATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHhccchhhhhHHHHHH
Confidence 999999888888877654
No 309
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=84.70 E-value=7 Score=42.02 Aligned_cols=93 Identities=15% Similarity=-0.042 Sum_probs=68.7
Q ss_pred HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH-HHHhcCCCchHHH
Q 035535 14 LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE-QALKIESSHFKAL 92 (518)
Q Consensus 14 ~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~-~al~l~p~~~ka~ 92 (518)
...++...|+.....++..+|.... ++.|++.+....|....++.+.. .+....|++....
T Consensus 78 ~~~~~~~~~~~~~~~~l~~~~~~~~------------------~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~ 139 (620)
T COG3914 78 APLADSTLAFLAKRIPLSVNPENCP------------------AVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFL 139 (620)
T ss_pred cccccchhHHHHHhhhHhcCcccch------------------HHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHH
Confidence 3445556666667777777776655 88899988888776655555544 4888999887766
Q ss_pred HHH------HHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 93 LCK------GKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 93 ~~~------g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
..+ |..+..+++..++...+.++. ..|.++..
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~d~~p~~~~~ 178 (620)
T COG3914 140 GHLIRFYQLGRYLKLLGRTAEAELALERAVDLLPKYPRV 178 (620)
T ss_pred hhHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhhhhhh
Confidence 666 888888899999999999888 77776543
No 310
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.32 E-value=1.9 Score=29.83 Aligned_cols=25 Identities=12% Similarity=0.173 Sum_probs=19.1
Q ss_pred HHHHHHHHhccChHHHHHHHHHHHh
Q 035535 93 LCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 93 ~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+.+|.+|..+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5677788888888888888877773
No 311
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=83.76 E-value=2.3 Score=44.23 Aligned_cols=60 Identities=25% Similarity=0.397 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcC---------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIE---------SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~---------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+..-+..++.-+|+|..|++..+- ++++ +-+...+|..|-+|+.+++|.+|++.|...+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566778889999999987654 3332 3467889999999999999999999999988
No 312
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=83.67 E-value=3.4 Score=27.18 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHH--HHHHHhhc
Q 035535 4 QQLRSKATELLLREEWKESVQVYT--QFIDLCQS 35 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~--~Al~~~p~ 35 (518)
+.|...|-.++.+|+|++|+..|+ -+..+++.
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~ 35 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKY 35 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccc
Confidence 567888999999999999999944 77777664
No 313
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.41 E-value=2.6 Score=41.24 Aligned_cols=60 Identities=15% Similarity=0.047 Sum_probs=49.6
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH--hccccCCcHHHHHHHHHH
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL--VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al--~~p~~~~~~~~l~~~l~~ 134 (518)
|..+|.+|+.+.|++...|..+|.+....|+.=+|+-+|-+++ ..| .+....++..++.+
T Consensus 1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~P-f~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIP-FPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHH
Confidence 6789999999999999999999999999999999999999999 444 45566777777766
No 314
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=83.36 E-value=9 Score=40.24 Aligned_cols=92 Identities=21% Similarity=0.165 Sum_probs=75.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...-...+..|+...|-+....+++..|..+. ...-++.++..+|.|+.|+++..-+-.+=.
T Consensus 293 ~~si~k~~~~gd~~aas~~~~~~lr~~~~~p~------------------~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~ 354 (831)
T PRK15180 293 TLSITKQLADGDIIAASQQLFAALRNQQQDPV------------------LIQLRSVIFSHLGYYEQAYQDISDVEKIIG 354 (831)
T ss_pred HHHHHHHhhccCHHHHHHHHHHHHHhCCCCch------------------hhHHHHHHHHHhhhHHHHHHHhhchhhhhc
Confidence 33445567789999999999999999888876 666788999999999999998877766666
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.-.++.-.+-+.+..++++++|...-.-.+
T Consensus 355 s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l 384 (831)
T PRK15180 355 TTDSTLRCRLRSLHGLARWREALSTAEMML 384 (831)
T ss_pred CCchHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence 667788888888999999999988776666
No 315
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=83.29 E-value=7.9 Score=29.31 Aligned_cols=33 Identities=21% Similarity=0.266 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
.+-.+..+|..+=+.|+|++|+.+|++|++..-
T Consensus 4 ~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~ 36 (69)
T PF04212_consen 4 KAIELIKKAVEADEAGNYEEALELYKEAIEYLM 36 (69)
T ss_dssp HHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 355677788888899999999999999998753
No 316
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.18 E-value=5.3 Score=39.09 Aligned_cols=62 Identities=18% Similarity=0.027 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535 22 SVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS 101 (518)
Q Consensus 22 Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~ 101 (518)
|+.+|.+|+.+.|.... .|..+|......|+.-.|+-+|-+++-..-.++.|.-++...+..
T Consensus 1 A~~~Y~~A~~l~P~~G~------------------p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNGN------------------PYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBSH------------------HHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCCC------------------cccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 78899999999999987 899999999999999999999999998876678888888888777
No 317
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=82.87 E-value=31 Score=31.61 Aligned_cols=69 Identities=16% Similarity=0.227 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS 124 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~ 124 (518)
.++..+|.-|.+.|++++|++.+.++.+...+ ....+++.-++....+++......+.++-..+...++
T Consensus 37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 48999999999999999999999998886532 2457788889999999999999999999844444443
No 318
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.82 E-value=8.1 Score=39.75 Aligned_cols=97 Identities=16% Similarity=0.120 Sum_probs=74.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|.-|...|++..|+..|.++-+++..... . .-.+.|.-.+-..+|+|.....+..+|.+.
T Consensus 152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh----v-----------Inm~ln~i~VSI~~~nw~hv~sy~~~A~st 216 (466)
T KOG0686|consen 152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH----V-----------INMCLNLILVSIYMGNWGHVLSYISKAEST 216 (466)
T ss_pred HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH----H-----------HHHHHHHHHHHHhhcchhhhhhHHHHHHhC
Confidence 4566788899999999999999998777654321 1 126778888888899999999988888766
Q ss_pred C--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 E--------SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
- .-.++..-..|.+.+.+++|..|.++|-.+-
T Consensus 217 ~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 217 PDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred chhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 1 1135666778889999999999998887665
No 319
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=82.51 E-value=7.7 Score=30.33 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+..+..+|..+=+.|+|++|+.+|.+||+..-.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3566778889999999999999999999987543
No 320
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.49 E-value=15 Score=43.66 Aligned_cols=99 Identities=12% Similarity=0.008 Sum_probs=87.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
...-|...|..++++.+-++|-....+||...|.... .......|+.-++.|+.+.+...++-.
T Consensus 1563 ~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eH----------------v~~IskfAqLEFk~GDaeRGRtlfEgl 1626 (1710)
T KOG1070|consen 1563 TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEH----------------VEFISKFAQLEFKYGDAERGRTLFEGL 1626 (1710)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhh----------------HHHHHHHHHHHhhcCCchhhHHHHHHH
Confidence 3457889999999999999999999999999988321 117788899999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.-.|.....|.-....-...|+.+.+...|++++
T Consensus 1627 l~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi 1661 (1710)
T KOG1070|consen 1627 LSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVI 1661 (1710)
T ss_pred HhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 99999998999888888889999999999999999
No 321
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=82.44 E-value=17 Score=32.37 Aligned_cols=84 Identities=10% Similarity=-0.128 Sum_probs=52.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+.+.........+..++.......=.+.|+.+. +-.--+-.++..|+|.+|+..++...+-.
T Consensus 13 Li~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e------------------~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 13 LIEVLMYALRSADPYDAQAMLDALRVLRPNLKE------------------LDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccc------------------cchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 334444445566666666666555555666654 34444566777777777777777776666
Q ss_pred CCchHHHHHHHHHHHhccChHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSM 107 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~ 107 (518)
+..+-+---++.|++.+|+.+-
T Consensus 75 ~~~p~~kAL~A~CL~al~Dp~W 96 (153)
T TIGR02561 75 GAPPYGKALLALCLNAKGDAEW 96 (153)
T ss_pred CCchHHHHHHHHHHHhcCChHH
Confidence 6655555556777777776653
No 322
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=81.48 E-value=2.8 Score=27.93 Aligned_cols=31 Identities=10% Similarity=0.222 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+-+-.+|...+..++|.+|+.-|.++|.+..
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4466789999999999999999999998753
No 323
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=80.29 E-value=12 Score=35.37 Aligned_cols=76 Identities=8% Similarity=0.043 Sum_probs=61.6
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 63 ~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
..+++-+...+|+.+.+.-++-+|.+.-....+-+.|.-.|+|++|...++-+- ..|++.......+.++ +|..+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~li-r~ea~R 85 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLI-RCEAAR 85 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHH-HHHHHH
Confidence 356778899999999999999999999988888899999999999999999988 7887766544444444 344443
No 324
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.97 E-value=24 Score=35.55 Aligned_cols=107 Identities=17% Similarity=0.123 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..|...+..+.+.|.++.|.....++....+.... ..+. +..-.|..+...|+..+|+...+..
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~---~~~~-----------v~~e~akllw~~g~~~~Ai~~L~~~ 210 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSES---LLPR-----------VFLEYAKLLWAQGEQEEAIQKLREL 210 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccC---CCcc-----------hHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3556788889999999999999999999886633211 0111 6777888888999999999988888
Q ss_pred Hhc--C-C-------------------------------CchHHHHHHHHHHHhc------cChHHHHHHHHHHH-hccc
Q 035535 82 LKI--E-S-------------------------------SHFKALLCKGKILLSL------NRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 82 l~l--~-p-------------------------------~~~ka~~~~g~al~~l------g~~~~A~~~~~~al-~~p~ 120 (518)
+.. . + ...++++.+|.-...+ +.+++++..|++++ ..|+
T Consensus 211 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 290 (352)
T PF02259_consen 211 LKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS 290 (352)
T ss_pred HHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh
Confidence 771 1 0 1245666777766677 77888888888888 5554
Q ss_pred cC
Q 035535 121 AS 122 (518)
Q Consensus 121 ~~ 122 (518)
..
T Consensus 291 ~~ 292 (352)
T PF02259_consen 291 WE 292 (352)
T ss_pred HH
Confidence 33
No 325
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=79.96 E-value=37 Score=35.06 Aligned_cols=100 Identities=11% Similarity=0.098 Sum_probs=69.0
Q ss_pred HHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH
Q 035535 12 ELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA 91 (518)
Q Consensus 12 ~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka 91 (518)
.....|+|+.|+++.+......--. +...+ +..+.++.-.+...+. -+...|..+..+++++.|+.+.+
T Consensus 197 ~r~~~gdWd~AlkLvd~~~~~~vie-------~~~ae---R~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPa 265 (531)
T COG3898 197 ARCAAGDWDGALKLVDAQRAAKVIE-------KDVAE---RSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPA 265 (531)
T ss_pred HHHhcCChHHHHHHHHHHHHHHhhc-------hhhHH---HHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchH
Confidence 3456788888888777665432111 01111 1222233333433332 35889999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
-.--+.+|+..|+..++-..++.+- ..| +|+
T Consensus 266 av~AAralf~d~~~rKg~~ilE~aWK~eP-HP~ 297 (531)
T COG3898 266 AVVAARALFRDGNLRKGSKILETAWKAEP-HPD 297 (531)
T ss_pred HHHHHHHHHhccchhhhhhHHHHHHhcCC-ChH
Confidence 9999999999999999999999998 444 554
No 326
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=79.30 E-value=5.1 Score=26.31 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhccChHHHHHHHH
Q 035535 90 KALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
+.++.+|-.++..|+|++|++.|+
T Consensus 2 e~~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 2 EYLYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhHHHHHHHHH
Confidence 456777778888888888888744
No 327
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=78.90 E-value=25 Score=31.67 Aligned_cols=66 Identities=17% Similarity=0.069 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.+.....+-++.++.+++...++..--+.|..+..-..-|..+...|+|.+|+..|+... ..|..|
T Consensus 12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p 78 (160)
T PF09613_consen 12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFP 78 (160)
T ss_pred HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCh
Confidence 677777788888999999999988889999999999999999999999999999999977 444333
No 328
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=78.87 E-value=2.8 Score=25.09 Aligned_cols=23 Identities=30% Similarity=-0.012 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
+++++|.++...|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 78899999999999999998765
No 329
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=78.22 E-value=13 Score=28.83 Aligned_cols=33 Identities=18% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
.+..+..+|...=..|+|++|+.+|.+|++..-
T Consensus 5 ~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~ 37 (75)
T cd02678 5 KAIELVKKAIEEDNAGNYEEALRLYQHALEYFM 37 (75)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 356677888888899999999999999998753
No 330
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=77.74 E-value=12 Score=38.50 Aligned_cols=68 Identities=24% Similarity=0.138 Sum_probs=57.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh---------c-----CCC---------------chHHHHHHHHHHHhccChHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALK---------I-----ESS---------------HFKALLCKGKILLSLNRYSM 107 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~---------l-----~p~---------------~~ka~~~~g~al~~lg~~~~ 107 (518)
.+..+|.++..+|+++.|.+.+++||- . ++. ...++++....+.+.|.+.-
T Consensus 42 tLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~rT 121 (360)
T PF04910_consen 42 TLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCWRT 121 (360)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcHHH
Confidence 888999999999999999999999972 1 111 35788999999999999999
Q ss_pred HHHHHHHHH-hccc-cCCc
Q 035535 108 ALDCFKETL-VDAQ-ASGS 124 (518)
Q Consensus 108 A~~~~~~al-~~p~-~~~~ 124 (518)
|++..+-.+ ++|. ||-.
T Consensus 122 AlE~~KlLlsLdp~~DP~g 140 (360)
T PF04910_consen 122 ALEWCKLLLSLDPDEDPLG 140 (360)
T ss_pred HHHHHHHHHhcCCCCCcch
Confidence 999999888 8887 6643
No 331
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=77.39 E-value=8.8 Score=32.22 Aligned_cols=63 Identities=14% Similarity=0.247 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhhc-----------HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 035535 5 QLRSKATELLLREE-----------WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN 73 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~-----------~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~ 73 (518)
-...+|..+++... ...|+++|+++..+.|..+. .++++|.=+--...|++
T Consensus 35 lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~------------------~L~~la~~l~s~~~Ykk 96 (111)
T PF04781_consen 35 LHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAH------------------SLFELASQLGSVKYYKK 96 (111)
T ss_pred HHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHH------------------HHHHHHHHhhhHHHHHH
Confidence 34567777764432 46789999999999988765 77888877666778999
Q ss_pred HHHHHHHHHhcC
Q 035535 74 ALRDCEQALKIE 85 (518)
Q Consensus 74 Al~~~~~al~l~ 85 (518)
++.-++++|.+.
T Consensus 97 ~v~kak~~Lsv~ 108 (111)
T PF04781_consen 97 AVKKAKRGLSVT 108 (111)
T ss_pred HHHHHHHHhccc
Confidence 999999999874
No 332
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=77.31 E-value=1.8 Score=43.61 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=55.3
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
.+...++.+.|..|+..-..+++.++.... +++.++.++..+.++++|+++...+....|++
T Consensus 281 ~~~~~lk~~~~~~a~~~~~~~~~~~~s~tk------------------a~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d 342 (372)
T KOG0546|consen 281 LAAVGLKVKGRGGARFRTNEALRDERSKTK------------------AHYRRGQAYKLLKNYDEALEDLKKAKQKAPND 342 (372)
T ss_pred hHHhcccccCCCcceeccccccccChhhCc------------------HHHHHHhHHHhhhchhhhHHHHHHhhccCcch
Confidence 344556667777777777777775555444 99999999999999999999999999999988
Q ss_pred hHHHHHHHHH
Q 035535 89 FKALLCKGKI 98 (518)
Q Consensus 89 ~ka~~~~g~a 98 (518)
....-.+..+
T Consensus 343 ~~i~~~~~~~ 352 (372)
T KOG0546|consen 343 KAIEEELENV 352 (372)
T ss_pred HHHHHHHHHh
Confidence 7655444333
No 333
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=77.12 E-value=23 Score=35.80 Aligned_cols=82 Identities=16% Similarity=0.004 Sum_probs=62.3
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc------------CHHHHHHHHHHHHhcCCCchHH
Q 035535 24 QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR------------DFDNALRDCEQALKIESSHFKA 91 (518)
Q Consensus 24 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg------------~~~~Al~~~~~al~l~p~~~ka 91 (518)
..|++.+.-+|.+.. +|..+..-.-.+- -.+.-+..+++||+.+|++.+.
T Consensus 6 ~el~~~v~~~P~di~------------------~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L 67 (321)
T PF08424_consen 6 AELNRRVRENPHDIE------------------AWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERL 67 (321)
T ss_pred HHHHHHHHhCcccHH------------------HHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHH
Confidence 457788888888765 5555544433332 2567788999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+..+=.+...+.+-++..+-+++++ ..|+++.
T Consensus 68 ~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~ 100 (321)
T PF08424_consen 68 LLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPE 100 (321)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChH
Confidence 9888888889999999999999999 6665443
No 334
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=76.28 E-value=13 Score=40.84 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+++++.|..+.....|++|.++|.+.-. .-|...|++++..|++- +....
T Consensus 797 ~A~r~ig~~fa~~~~We~A~~yY~~~~~--------------------------~e~~~ecly~le~f~~L----E~la~ 846 (1189)
T KOG2041|consen 797 DAFRNIGETFAEMMEWEEAAKYYSYCGD--------------------------TENQIECLYRLELFGEL----EVLAR 846 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc--------------------------hHhHHHHHHHHHhhhhH----HHHHH
Confidence 4667777777777777777777765421 23556677777666652 22223
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
.=|++.+.+-.+|..+...|.-++|.++|-+.
T Consensus 847 ~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~ 878 (1189)
T KOG2041|consen 847 TLPEDSELLPVMADMFTSVGMCDQAVEAYLRR 878 (1189)
T ss_pred hcCcccchHHHHHHHHHhhchHHHHHHHHHhc
Confidence 34667777778888888888888888877553
No 335
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=76.27 E-value=22 Score=34.47 Aligned_cols=83 Identities=18% Similarity=0.049 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--CC----chHHHH
Q 035535 20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE--SS----HFKALL 93 (518)
Q Consensus 20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~--p~----~~ka~~ 93 (518)
...|+.+++|++....... .++...+...+|.-|++.|+|++|++.++.+...- .. ....+.
T Consensus 155 ~~iI~lL~~A~~~f~~~~~------------~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~ 222 (247)
T PF11817_consen 155 KLIIELLEKAYEQFKKYGQ------------NRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLW 222 (247)
T ss_pred HHHHHHHHHHHHHHHHhcc------------chHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHH
Confidence 3556667777766544322 23334466778888888888888888888885431 11 234556
Q ss_pred HHHHHHHhccChHHHHHHHHH
Q 035535 94 CKGKILLSLNRYSMALDCFKE 114 (518)
Q Consensus 94 ~~g~al~~lg~~~~A~~~~~~ 114 (518)
.+..|+..+|+.++.+...-+
T Consensus 223 ~l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 223 RLLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHHhCCHHHHHHHHHH
Confidence 667777777777776655433
No 336
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=76.26 E-value=40 Score=34.87 Aligned_cols=63 Identities=13% Similarity=0.129 Sum_probs=41.9
Q ss_pred HHHHHHHh---hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------ccCHHHHH
Q 035535 8 SKATELLL---REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR---------LRDFDNAL 75 (518)
Q Consensus 8 ~~Gn~~~~---~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~---------lg~~~~Al 75 (518)
..|.++-+ .|+.++|+..+..++....... ++ .+.-.|.+|-. ....++|+
T Consensus 184 ~yafALnRrn~~gdre~Al~il~~~l~~~~~~~------~d-----------~~gL~GRIyKD~~~~s~~~d~~~ldkAi 246 (374)
T PF13281_consen 184 QYAFALNRRNKPGDREKALQILLPVLESDENPD------PD-----------TLGLLGRIYKDLFLESNFTDRESLDKAI 246 (374)
T ss_pred HHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC------hH-----------HHHHHHHHHHHHHHHcCccchHHHHHHH
Confidence 45666667 8999999999999766543321 12 33444444322 23478899
Q ss_pred HHHHHHHhcCCC
Q 035535 76 RDCEQALKIESS 87 (518)
Q Consensus 76 ~~~~~al~l~p~ 87 (518)
..|.++.+++|+
T Consensus 247 ~~Y~kgFe~~~~ 258 (374)
T PF13281_consen 247 EWYRKGFEIEPD 258 (374)
T ss_pred HHHHHHHcCCcc
Confidence 999999998876
No 337
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=75.26 E-value=76 Score=32.86 Aligned_cols=89 Identities=16% Similarity=0.102 Sum_probs=68.8
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHH--HHHHhccCHHHHHHHHHHHHhcC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRA--EARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra--~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
..+....-.|+|++|-..|+.-+. +|..- .+--|+ ..-.++|.++.|..+.++|-+.-
T Consensus 125 LeAQaal~eG~~~~Ar~kfeAMl~-dPEtR-------------------llGLRgLyleAqr~GareaAr~yAe~Aa~~A 184 (531)
T COG3898 125 LEAQAALLEGDYEDARKKFEAMLD-DPETR-------------------LLGLRGLYLEAQRLGAREAARHYAERAAEKA 184 (531)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-ChHHH-------------------HHhHHHHHHHHHhcccHHHHHHHHHHHHhhc
Confidence 356667788999999999977664 23211 222222 23456899999999999999999
Q ss_pred CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 86 SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 86 p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
|.-+.++...-......|+|+.|++..+...
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~ 215 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQR 215 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 9999988888888899999999999988766
No 338
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=75.23 E-value=16 Score=36.22 Aligned_cols=58 Identities=21% Similarity=0.129 Sum_probs=51.2
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
-+.-+......|++.+|...+..++..+|.+..+..-++.+|...|+.+.|...+...
T Consensus 137 ~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l 194 (304)
T COG3118 137 ALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL 194 (304)
T ss_pred HHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence 3445667788999999999999999999999999999999999999999998877643
No 339
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=75.18 E-value=17 Score=27.92 Aligned_cols=33 Identities=15% Similarity=0.271 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
+..+...|...=..|+|++|+.+|..|++..-.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 455677888888899999999999999987543
No 340
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.13 E-value=30 Score=37.81 Aligned_cols=68 Identities=22% Similarity=0.182 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 55 CLALSNRAEARSRLRDFDNALRDCEQALKIESS------HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~------~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
-.++.|-|.-+++..+|..+++.|...+..-|. ..|..-.++.||+.+.+.+.|.+++++|- -+|.++
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~ 428 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSP 428 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccH
Confidence 347889999999999999999999999986553 47788889999999999999999999998 565544
No 341
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=74.37 E-value=9.2 Score=33.72 Aligned_cols=50 Identities=12% Similarity=0.125 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD 70 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~ 70 (518)
++.+..++..++..|+|.-|+++.+.++..+|++.. +..-++.++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~------------------ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEE------------------ARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HH------------------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHHHH
Confidence 467788999999999999999999999999998865 56666666665553
No 342
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=74.32 E-value=58 Score=35.81 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
+|++-|..-++..+++.|+...++|...
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 5555555555555555555555555543
No 343
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.77 E-value=5.6 Score=30.96 Aligned_cols=34 Identities=21% Similarity=0.351 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+..+..+|...=..|+|++|+.+|.+||++.-.
T Consensus 5 kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~ 38 (75)
T cd02680 5 RAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN 38 (75)
T ss_pred HHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH
Confidence 3456777888888899999999999999998654
No 344
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=73.77 E-value=18 Score=35.00 Aligned_cols=64 Identities=16% Similarity=0.111 Sum_probs=50.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+.|.+++..|+|++|+..|+.+........- ...+..++..+..|..++|+.+..+..+-+.+
T Consensus 182 ~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW------------~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leLl 245 (247)
T PF11817_consen 182 LEMAEEYFRLGDYDKALKLLEPAASSYRREGW------------WSLLTEVLWRLLECAKRLGDVEDYLTTSLELL 245 (247)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCc------------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHh
Confidence 46899999999999999999999765543322 12334488899999999999999988776654
No 345
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.34 E-value=19 Score=28.01 Aligned_cols=34 Identities=12% Similarity=0.081 Sum_probs=28.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+-.+..+|...=..|+|++|+.+|.++|+..-.
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3556778888888999999999999999987643
No 346
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=73.32 E-value=16 Score=38.22 Aligned_cols=59 Identities=8% Similarity=0.066 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
.......+.-+|.+|+|.++..+-....+++| .+. +|--+|.|++...+|.+|...+..
T Consensus 462 ian~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~------------------~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 462 IANFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQ------------------AYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHH------------------HHHHHHHHHHHHhhHHHHHHHHHh
Confidence 34555667778999999999999999999998 333 888999999999999999987754
No 347
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=73.21 E-value=56 Score=35.90 Aligned_cols=114 Identities=11% Similarity=0.169 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccc-hhhhhhHHH-HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQIT-ETKQEASQL-SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~-~~~~~~~~~-~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
++-|.+-|..-++.++++.|+.+..+|... |..+. .-.++.+.. ..+.+++ .+|+..+...-.+|-++.....|++
T Consensus 425 a~vw~~waemElrh~~~~~Al~lm~~A~~v-P~~~~~~~yd~~~pvQ~rlhrSl-kiWs~y~DleEs~gtfestk~vYdr 502 (835)
T KOG2047|consen 425 AEVWCAWAEMELRHENFEAALKLMRRATHV-PTNPELEYYDNSEPVQARLHRSL-KIWSMYADLEESLGTFESTKAVYDR 502 (835)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHhhhcC-CCchhhhhhcCCCcHHHHHHHhH-HHHHHHHHHHHHhccHHHHHHHHHH
Confidence 566777788888899999999999999865 33211 001111111 1222222 2678888888888999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD 118 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~ 118 (518)
.+.+.=-.|..-.+.|..+..-..+++|.+.|++.+ +.
T Consensus 503 iidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 503 IIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccC
Confidence 999988888999999999999999999999999999 44
No 348
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=72.22 E-value=61 Score=31.74 Aligned_cols=84 Identities=18% Similarity=0.168 Sum_probs=68.1
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCchHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKIESSHFKALL 93 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l~p~~~ka~~ 93 (518)
+...-..|+++-..+|.++|.+.. +|.-|=.++-.++ +..+-++++++.++-+|.|.+.|.
T Consensus 55 ~~E~S~RAl~LT~d~i~lNpAnYT------------------VW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWH 116 (318)
T KOG0530|consen 55 KNEKSPRALQLTEDAIRLNPANYT------------------VWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWH 116 (318)
T ss_pred ccccCHHHHHHHHHHHHhCcccch------------------HHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHH
Confidence 344456788888888888888765 7777777766665 578889999999999999999999
Q ss_pred HHHHHHHhccChH-HHHHHHHHHH
Q 035535 94 CKGKILLSLNRYS-MALDCFKETL 116 (518)
Q Consensus 94 ~~g~al~~lg~~~-~A~~~~~~al 116 (518)
.+-.+...+|++. .-++..+.++
T Consensus 117 HRr~ive~l~d~s~rELef~~~~l 140 (318)
T KOG0530|consen 117 HRRVIVELLGDPSFRELEFTKLML 140 (318)
T ss_pred HHHHHHHHhcCcccchHHHHHHHH
Confidence 9999999999888 6677677776
No 349
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=71.93 E-value=11 Score=33.21 Aligned_cols=51 Identities=20% Similarity=0.098 Sum_probs=40.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSM 107 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~ 107 (518)
....+|...+..|+|.-|++.++.++..+|+|..+...++.+|..+|.-.+
T Consensus 72 ~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 72 KVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 466788888999999999999999999999999999999998888775443
No 350
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.24 E-value=57 Score=35.76 Aligned_cols=89 Identities=15% Similarity=0.129 Sum_probs=70.7
Q ss_pred HHHHHHHHhh----h-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHH
Q 035535 7 RSKATELLLR----E-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR---DFDNALRDC 78 (518)
Q Consensus 7 ~~~Gn~~~~~----g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg---~~~~Al~~~ 78 (518)
...|..+++. . ++..|+.+|.+|-.....+ +.+++|.++..-. ++..|.+++
T Consensus 292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~--------------------a~~~lg~~~~~g~~~~d~~~A~~yy 351 (552)
T KOG1550|consen 292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPD--------------------AQYLLGVLYETGTKERDYRRAFEYY 351 (552)
T ss_pred cHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCch--------------------HHHHHHHHHHcCCccccHHHHHHHH
Confidence 3467777763 2 7889999999998875433 7788888887765 678999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhc----cChHHHHHHHHHHHh
Q 035535 79 EQALKIESSHFKALLCKGKILLSL----NRYSMALDCFKETLV 117 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~l----g~~~~A~~~~~~al~ 117 (518)
..|... .+..|.+++|.+|..- .+...|..+|+++..
T Consensus 352 ~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~ 392 (552)
T KOG1550|consen 352 SLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKKAAE 392 (552)
T ss_pred HHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHH
Confidence 998776 4889999999998743 578899999999983
No 351
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=70.23 E-value=86 Score=33.38 Aligned_cols=94 Identities=18% Similarity=0.081 Sum_probs=66.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-cC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK-IE 85 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~-l~ 85 (518)
.-.|--...-+.|+.|...|..|..+-... .+.+.+-.|+|..|++.++-+. +.++++ +.
T Consensus 371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~---------------dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~ 431 (629)
T KOG2300|consen 371 MLLGLYSHSVNCYENAEFHFIEATKLTESI---------------DLQAFCNLNLAISYLRIGDAED----LYKALDLIG 431 (629)
T ss_pred HHHhhHhhhcchHHHHHHHHHHHHHhhhHH---------------HHHHHHHHhHHHHHHHhccHHH----HHHHHHhcC
Confidence 345555566677888888888888763221 1245578899999999877544 333333 34
Q ss_pred CCc----------hHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 86 SSH----------FKALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 86 p~~----------~ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
|.| ...+|-.|...+..+++.||...+.+.+...
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkma 475 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMA 475 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence 432 4567888888999999999999999999553
No 352
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=70.19 E-value=8.4 Score=26.60 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=24.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 59 SNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 59 ~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
+++|.+|+.+|+++.|.+.++.++.-
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~ 28 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEE 28 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHc
Confidence 58999999999999999999999954
No 353
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=69.76 E-value=28 Score=26.79 Aligned_cols=33 Identities=21% Similarity=0.318 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
+..+..+|..+=..|++++|+.+|.+|++..-.
T Consensus 8 A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 8 AKELISKALKADEAGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 456777888888899999999999999987543
No 354
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=69.22 E-value=49 Score=37.39 Aligned_cols=111 Identities=14% Similarity=0.041 Sum_probs=66.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHH-H-HHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLK-K-SLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~-~-~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+.+..+-.+++.+.|+++|+++=.-.-+-..--...|..++..- + ---.+|.--|+-+-..|+.+.|+..|..|-.
T Consensus 861 yy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D 940 (1416)
T KOG3617|consen 861 YYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD 940 (1416)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence 4556666777888888999988762111000000000011110000 0 0002455556666677888888887777653
Q ss_pred c---------------------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 I---------------------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l---------------------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
. ...+--|-|.+|+-|...|++.+|+..|.+|-
T Consensus 941 ~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 941 YFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 2 23466788999999999999999999998875
No 355
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=68.41 E-value=43 Score=36.29 Aligned_cols=88 Identities=15% Similarity=-0.010 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHH
Q 035535 21 ESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILL 100 (518)
Q Consensus 21 ~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~ 100 (518)
.|+..|...+..+|.++. +.++.. ++..+..++....+.-....++..||++.+++..+|.++.
T Consensus 49 ~~~~a~~~~~~~~~~~~~---------------llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale 112 (620)
T COG3914 49 LAIYALLLGIAINDVNPE---------------LLLAAF-LSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALE 112 (620)
T ss_pred HHHHHHHccCccCCCCHH---------------HHHHHH-HHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHH
Confidence 366667666666666543 233444 8889999999999999999999999999999999999999
Q ss_pred hccChHHHHHHHHH-HH-hccccCCc
Q 035535 101 SLNRYSMALDCFKE-TL-VDAQASGS 124 (518)
Q Consensus 101 ~lg~~~~A~~~~~~-al-~~p~~~~~ 124 (518)
..|....+...+.. +. ..|.+...
T Consensus 113 ~~~~~~~~~~~~~~~a~~~~~~~~~~ 138 (620)
T COG3914 113 LDGLQFLALADISEIAEWLSPDNAEF 138 (620)
T ss_pred HhhhHHHHHHHHHHHHHhcCcchHHH
Confidence 99888888887776 55 55554443
No 356
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=68.27 E-value=20 Score=35.41 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+..+...+...|+++.++...++.+..+|.+.. +|..+=.+|++.|+...|+..|++.-
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~------------------~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEP------------------AYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchH------------------HHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 456677888899999999999999999999998865 88888899999999999999988875
Q ss_pred hc
Q 035535 83 KI 84 (518)
Q Consensus 83 ~l 84 (518)
+.
T Consensus 215 ~~ 216 (280)
T COG3629 215 KT 216 (280)
T ss_pred HH
Confidence 53
No 357
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=67.68 E-value=40 Score=26.18 Aligned_cols=34 Identities=18% Similarity=0.170 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+..+..+|...=..|+|++|..+|..+|+..-.
T Consensus 5 ~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 5 QAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 3556777888888999999999999999987543
No 358
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.52 E-value=62 Score=31.79 Aligned_cols=97 Identities=15% Similarity=0.085 Sum_probs=69.7
Q ss_pred HHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----c---CH
Q 035535 3 MQQLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL----R---DF 71 (518)
Q Consensus 3 a~~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l----g---~~ 71 (518)
+......|..++. ..++.+|...|++|........ ..+..+++.+|..- + +.
T Consensus 109 ~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a-----------------~~~~~~l~~~~~~g~~~~~~~~~~ 171 (292)
T COG0790 109 AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEA-----------------ALAMYRLGLAYLSGLQALAVAYDD 171 (292)
T ss_pred HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhH-----------------HHHHHHHHHHHHcChhhhcccHHH
Confidence 3455667777776 4589999999999988643221 01356666666553 1 33
Q ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHhc
Q 035535 72 DNALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLVD 118 (518)
Q Consensus 72 ~~Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~~ 118 (518)
..|+..+.+|-... ++.+.+.+|.+|.. -.++.+|...|+++...
T Consensus 172 ~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~ 220 (292)
T COG0790 172 KKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ 220 (292)
T ss_pred HhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC
Confidence 47899999988776 88999999988754 34889999999999843
No 359
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=67.48 E-value=56 Score=33.93 Aligned_cols=84 Identities=14% Similarity=0.179 Sum_probs=61.1
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--HHHHHHHHHHHHhcCCCchHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD--FDNALRDCEQALKIESSHFKAL 92 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~--~~~Al~~~~~al~l~p~~~ka~ 92 (518)
+..-+++-+..-..+|..+|+... +|..|.-++.+.+. +..=++.|+++++.||.|..+|
T Consensus 87 k~~~ld~eL~~~~~~L~~npksY~------------------aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W 148 (421)
T KOG0529|consen 87 KQALLDEELKYVESALKVNPKSYG------------------AWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAW 148 (421)
T ss_pred HHHhhHHHHHHHHHHHHhCchhHH------------------HHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccch
Confidence 444566777778888888888766 89999999987764 6888999999999999998887
Q ss_pred HHHHHHHH-hccC---hHHHHHHHHHHH
Q 035535 93 LCKGKILL-SLNR---YSMALDCFKETL 116 (518)
Q Consensus 93 ~~~g~al~-~lg~---~~~A~~~~~~al 116 (518)
..+=.+.. .... ..+=++...+++
T Consensus 149 ~YRRfV~~~~~~~~~~~~~El~ftt~~I 176 (421)
T KOG0529|consen 149 HYRRFVVEQAERSRNLEKEELEFTTKLI 176 (421)
T ss_pred HHHHHHHHHHhcccccchhHHHHHHHHH
Confidence 54433333 2222 455566666666
No 360
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.81 E-value=40 Score=36.97 Aligned_cols=98 Identities=13% Similarity=0.093 Sum_probs=69.2
Q ss_pred HHHHHHHHHh-----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-----CHHHHH
Q 035535 6 LRSKATELLL-----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-----DFDNAL 75 (518)
Q Consensus 6 l~~~Gn~~~~-----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-----~~~~Al 75 (518)
....|..++. .+|.+.|+.+|..+.......+. +.+..+.+.+|.+|.+-. ++..|+
T Consensus 247 ~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~-------------~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~ 313 (552)
T KOG1550|consen 247 QYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAAT-------------KGLPPAQYGLGRLYLQGLGVEKIDYEKAL 313 (552)
T ss_pred HHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHh-------------hcCCccccHHHHHHhcCCCCccccHHHHH
Confidence 3444555543 46899999999999872100000 001116778888888843 788999
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhcc---ChHHHHHHHHHHHhc
Q 035535 76 RDCEQALKIESSHFKALLCKGKILLSLN---RYSMALDCFKETLVD 118 (518)
Q Consensus 76 ~~~~~al~l~p~~~ka~~~~g~al~~lg---~~~~A~~~~~~al~~ 118 (518)
..+.+|-+++ ++.+.+.+|.++..-. ++..|.++|..|...
T Consensus 314 ~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~ 357 (552)
T KOG1550|consen 314 KLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA 357 (552)
T ss_pred HHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc
Confidence 9999998886 6788899999998765 678999999998843
No 361
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=65.40 E-value=3.6 Score=42.74 Aligned_cols=41 Identities=24% Similarity=0.408 Sum_probs=31.4
Q ss_pred cccCCCCC---CceEEeeCCEEEEEEcCCCCCCCeEEeecCCCC
Q 035535 318 FINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 318 ~~NHsC~P---N~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
++|=++.. |...+-.+..|..+++|+|++||||.+.|.+.+
T Consensus 103 YV~~Ar~~eeQNL~A~Q~~~~Ifyrt~r~I~p~eELlVWY~~e~ 146 (396)
T KOG2461|consen 103 YVNSARSEEEQNLLAFQIGENIFYRTIRDIRPNEELLVWYGSEY 146 (396)
T ss_pred eecccCChhhhhHHHHhccCceEEEecccCCCCCeEEEEeccch
Confidence 44444443 555555677999999999999999999998754
No 362
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.26 E-value=61 Score=28.84 Aligned_cols=63 Identities=17% Similarity=0.097 Sum_probs=54.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
.+.....+-+..++.+++....+..--+.|+.+..-..-|..+...|+|.+|+..|+.....+
T Consensus 12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 455555566668999999988888888999999999999999999999999999999987443
No 363
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=64.23 E-value=15 Score=39.20 Aligned_cols=66 Identities=18% Similarity=0.049 Sum_probs=51.3
Q ss_pred HHHHHHHHHhh---hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 6 LRSKATELLLR---EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 6 l~~~Gn~~~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+-+++..++++ |+--.|+.-...|++++|.... +++.++.++..++++.+|+++...+.
T Consensus 411 l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~k------------------ah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 411 LENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQK------------------AHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHH------------------HHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 44455556553 3556677778888888887655 99999999999999999999888877
Q ss_pred hcCCCch
Q 035535 83 KIESSHF 89 (518)
Q Consensus 83 ~l~p~~~ 89 (518)
...|.++
T Consensus 473 ~~~Ptd~ 479 (758)
T KOG1310|consen 473 MSFPTDV 479 (758)
T ss_pred hcCchhh
Confidence 7778553
No 364
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.92 E-value=79 Score=36.06 Aligned_cols=113 Identities=12% Similarity=0.170 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-----c--cCHHHH--
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-----L--RDFDNA-- 74 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-----l--g~~~~A-- 74 (518)
.+-.++|-.+...|+|.+|+++|..+|-..|-....+.....++ .+.+.++..-+....+. + ...+.+
T Consensus 992 ~~kl~~gy~ltt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea---~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~E 1068 (1202)
T KOG0292|consen 992 NKKLQKGYKLTTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEA---DELIKICREYIVGLSVELERRKLKKPNLEQQLE 1068 (1202)
T ss_pred HHHHHHHHhhhccCcHHHHHHHHHHHHhheeEEEecchhhHHHH---HHHHHHHHHHHhhheeeeeecccCCchHHHHHH
Confidence 44567899999999999999999999988876654222222222 22222232222211111 1 234444
Q ss_pred HHHHHHHHhcCCCchHHHHHH-HHHHHhccChHHHHHHHHHHH-hcc
Q 035535 75 LRDCEQALKIESSHFKALLCK-GKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 75 l~~~~~al~l~p~~~ka~~~~-g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+..|=.-..+.|-|.-.-.+. -.+++.+++|..|-..-.+.+ ..|
T Consensus 1069 lAaYFt~~~Lqp~H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~ 1115 (1202)
T KOG0292|consen 1069 LAAYFTHCKLQPMHRILALRTAMNVFFKLKNLKTAAEFARRLLELAP 1115 (1202)
T ss_pred HHHHhhcCCCCcHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCC
Confidence 333333346677765544444 456789999999999888888 444
No 365
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.87 E-value=85 Score=33.41 Aligned_cols=98 Identities=15% Similarity=0.056 Sum_probs=74.3
Q ss_pred HHHHHHHHH-hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHh
Q 035535 6 LRSKATELL-LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALK 83 (518)
Q Consensus 6 l~~~Gn~~~-~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~ 83 (518)
..+.|..++ -..+++.|-.+.++|..+...-+. .+.+...+++-+|.+|.... .+..|.....+|++
T Consensus 49 ~LqLg~lL~~yT~N~elAksHLekA~~i~~~ip~-----------fydvKf~a~SlLa~lh~~~~~s~~~~KalLrkaie 117 (629)
T KOG2300|consen 49 HLQLGALLLRYTKNVELAKSHLEKAWLISKSIPS-----------FYDVKFQAASLLAHLHHQLAQSFPPAKALLRKAIE 117 (629)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHccccc-----------HHhhhhHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Confidence 345566554 478899999999999988654433 11223347888999999988 89999999999999
Q ss_pred cCCCch----HHHHHHHHHHHhccChHHHHHHHHH
Q 035535 84 IESSHF----KALLCKGKILLSLNRYSMALDCFKE 114 (518)
Q Consensus 84 l~p~~~----ka~~~~g~al~~lg~~~~A~~~~~~ 114 (518)
+....+ +.++.++..+.-..+|..|++.+.-
T Consensus 118 lsq~~p~wsckllfQLaql~~idkD~~sA~elLav 152 (629)
T KOG2300|consen 118 LSQSVPYWSCKLLFQLAQLHIIDKDFPSALELLAV 152 (629)
T ss_pred HhcCCchhhHHHHHHHHHHHhhhccchhHHHHHhc
Confidence 976543 5678889999999999999887543
No 366
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=63.66 E-value=1.7e+02 Score=33.49 Aligned_cols=100 Identities=16% Similarity=0.058 Sum_probs=75.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESS 87 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~ 87 (518)
..+-.+....+|.+|-....++-...+.... ......++..-.-+|.+....|++++|++.++.++..=|.
T Consensus 420 l~aW~~~s~~r~~ea~~li~~l~~~l~~~~~---------~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~ 490 (894)
T COG2909 420 LQAWLLASQHRLAEAETLIARLEHFLKAPMH---------SRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE 490 (894)
T ss_pred HHHHHHHHccChHHHHHHHHHHHHHhCcCcc---------cchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc
Confidence 3455566778899998888888766544211 0112234446667889999999999999999999988664
Q ss_pred c-----hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 88 H-----FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 88 ~-----~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+ .-++-..|.+..-.|+|++|....+.+.
T Consensus 491 ~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~ 524 (894)
T COG2909 491 AAYRSRIVALSVLGEAAHIRGELTQALALMQQAE 524 (894)
T ss_pred ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHH
Confidence 3 4467788999999999999999998887
No 367
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.62 E-value=36 Score=38.41 Aligned_cols=30 Identities=17% Similarity=0.256 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDL 32 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~ 32 (518)
++-++..|+-+|++|+|++|.+.|-++|..
T Consensus 368 ~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 368 AEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 456788999999999999999999999864
No 368
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=63.51 E-value=81 Score=32.75 Aligned_cols=65 Identities=17% Similarity=0.197 Sum_probs=47.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh--ccCHHHHHHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--LRDFDNALRDCEQAL 82 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--lg~~~~Al~~~~~al 82 (518)
.-..++..+|..++|..|...++..+...|.... ...+.+++.+|.. .-+|.+|.+.++..+
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~----------------~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~ 196 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRRLPGREE----------------YQRYKDLCEGYDAWDRFDHKEALEYLEKLL 196 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh----------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 4456788999999999999999998875222110 1256666666655 557899999999887
Q ss_pred hcC
Q 035535 83 KIE 85 (518)
Q Consensus 83 ~l~ 85 (518)
..+
T Consensus 197 ~~~ 199 (379)
T PF09670_consen 197 KRD 199 (379)
T ss_pred HHh
Confidence 653
No 369
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.72 E-value=16 Score=36.35 Aligned_cols=69 Identities=9% Similarity=0.052 Sum_probs=54.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHH-HHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLC-KGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~-~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
.|...+.--.+.+-|.+--..|.++++.+|.|+..|.. -+.-+...++++.|...|.+++ ..|..|.-+
T Consensus 109 ~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw 179 (435)
T COG5191 109 IWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIW 179 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHH
Confidence 66666666667778888888899999999999888765 4555677788999999999999 677666554
No 370
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=62.05 E-value=13 Score=37.04 Aligned_cols=29 Identities=7% Similarity=0.119 Sum_probs=19.6
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCchHHHH
Q 035535 65 RSRLRDFDNALRDCEQALKIESSHFKALL 93 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~ 93 (518)
+...++++.|...+.+++.++|.+++.|+
T Consensus 152 ~~~~ani~s~Ra~f~~glR~N~~~p~iw~ 180 (435)
T COG5191 152 LFEIANIESSRAMFLKGLRMNSRSPRIWI 180 (435)
T ss_pred hhhhccHHHHHHHHHhhhccCCCCchHHH
Confidence 44456677777777777777777776654
No 371
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.72 E-value=1.3e+02 Score=35.00 Aligned_cols=119 Identities=10% Similarity=-0.001 Sum_probs=73.5
Q ss_pred HHHHHHhhhcHHHHHHHHHH------HHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 9 KATELLLREEWKESVQVYTQ------FIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~------Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.|+.+...+-|++|...|.+ |+...-.+..+-.-..+-+++. .--.+|+.+|.+.++.+...+|++.+-+|
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~--n~p~vWsqlakAQL~~~~v~dAieSyika- 1130 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERC--NEPAVWSQLAKAQLQGGLVKDAIESYIKA- 1130 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhh--CChHHHHHHHHHHHhcCchHHHHHHHHhc-
Confidence 46667777778888777753 3332211111000000000000 00128999999999999999999988775
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEK 134 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~ 134 (518)
+++..|..--.+....|.|++-+.++..|-.....|....++--.+.+
T Consensus 1131 ----dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAk 1178 (1666)
T KOG0985|consen 1131 ----DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAK 1178 (1666)
T ss_pred ----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHH
Confidence 567778888888899999999999998888433334333333333333
No 372
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=61.43 E-value=53 Score=37.17 Aligned_cols=106 Identities=18% Similarity=0.084 Sum_probs=63.1
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhccc--chhhhhhHHH----HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQI--TETKQEASQL----SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL-- 82 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~--~~~~~~~~~~----~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al-- 82 (518)
..+...|-.++|...|.+.-+.+--+. .+.+.+.+.. -+++--+-..|+|.|.-+-..++.+.|+++|+++=
T Consensus 808 vLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~h 887 (1416)
T KOG3617|consen 808 VLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVH 887 (1416)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCCh
Confidence 334556667777777766654432110 0001111100 01122233478999999999999999999998752
Q ss_pred --------hcCCCch----------HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 --------KIESSHF----------KALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 --------~l~p~~~----------ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.-+|... +.|---|.-+...|+.+.|+..|..|-
T Consensus 888 afev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 888 AFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 2345433 333334777788899999999988865
No 373
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=59.91 E-value=46 Score=35.42 Aligned_cols=61 Identities=8% Similarity=0.057 Sum_probs=52.1
Q ss_pred hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHHhcCCCchHHHH
Q 035535 15 LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQALKIESSHFKALL 93 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~al~l~p~~~ka~~ 93 (518)
+.+.|.+--..|.++|...|++++ +|.-.|.=.+..+. .+.|...+.++|+.+|++++.|.
T Consensus 117 k~~~~~~v~ki~~~~l~~Hp~~~d------------------LWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~ 178 (568)
T KOG2396|consen 117 KKKTYGEVKKIFAAMLAKHPNNPD------------------LWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK 178 (568)
T ss_pred HhcchhHHHHHHHHHHHhCCCCch------------------hHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence 444588999999999999999988 88887877777775 89999999999999999988664
No 374
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=59.84 E-value=24 Score=34.54 Aligned_cols=50 Identities=28% Similarity=0.401 Sum_probs=44.8
Q ss_pred hccCHHHHHHHHHHHHhcCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 67 RLRDFDNALRDCEQALKIESSH----FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 67 ~lg~~~~Al~~~~~al~l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+-.++++|+..+.+++++.|.. .||+-..-++.+++++|++-++.|++.+
T Consensus 39 ~e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlL 92 (440)
T KOG1464|consen 39 KEDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLL 92 (440)
T ss_pred cccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence 3568999999999999999863 6788899999999999999999999887
No 375
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=59.75 E-value=66 Score=34.19 Aligned_cols=26 Identities=12% Similarity=0.183 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQF 29 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~A 29 (518)
..|+..|..++.+|+++-|..+|.++
T Consensus 348 ~~W~~Lg~~AL~~g~~~lAe~c~~k~ 373 (443)
T PF04053_consen 348 EKWKQLGDEALRQGNIELAEECYQKA 373 (443)
T ss_dssp HHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 45666666666666666666666554
No 376
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=59.75 E-value=27 Score=41.25 Aligned_cols=106 Identities=19% Similarity=0.206 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.++..+..+.+.|++++|+..-.+|.-+...... .++++. ...|.|++...+..++...|+..+.++
T Consensus 972 ~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g--~ds~~t--------~~~y~nlal~~f~~~~~~~al~~~~ra 1041 (1236)
T KOG1839|consen 972 VASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG--KDSPNT--------KLAYGNLALYEFAVKNLSGALKSLNRA 1041 (1236)
T ss_pred HHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc--CCCHHH--------HHHhhHHHHHHHhccCccchhhhHHHH
Confidence 3566788888899999999999998888765433322 222222 238999999999999999999999999
Q ss_pred Hhc-----CCCc---hHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 82 LKI-----ESSH---FKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 82 l~l-----~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+.+ .|++ .-...+++..+..+++++.|+++++.|+.
T Consensus 1042 ~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1042 LKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred HHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 876 2333 44556788889999999999999999983
No 377
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=58.09 E-value=2e+02 Score=28.97 Aligned_cols=80 Identities=10% Similarity=0.009 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI 98 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a 98 (518)
.+.-+..|++||+.+|++.. ++..+=.+..+.-+-++..+-.++++..+|+++..|...-..
T Consensus 47 ~E~klsilerAL~~np~~~~------------------L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~ 108 (321)
T PF08424_consen 47 AERKLSILERALKHNPDSER------------------LLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDF 108 (321)
T ss_pred HHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 56778899999999886644 333344444567788888999999999999988776544333
Q ss_pred HH---hccChHHHHHHHHHHH
Q 035535 99 LL---SLNRYSMALDCFKETL 116 (518)
Q Consensus 99 l~---~lg~~~~A~~~~~~al 116 (518)
.. ..-.++.....|.+++
T Consensus 109 ~q~~~~~f~v~~~~~~y~~~l 129 (321)
T PF08424_consen 109 RQSNFASFTVSDVRDVYEKCL 129 (321)
T ss_pred HHHHhccCcHHHHHHHHHHHH
Confidence 22 2335778888888877
No 378
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=57.83 E-value=1.1e+02 Score=33.94 Aligned_cols=108 Identities=11% Similarity=0.041 Sum_probs=74.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhccc----chhhhhh----HHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQI----TETKQEA----SQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~----~~~~~~~----~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
-|-.....+..+.|..++.++++.-.... ..+..+. +...-.....+.++...+.+.+-++++..|......
T Consensus 307 S~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~ 386 (608)
T PF10345_consen 307 SGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEF 386 (608)
T ss_pred HHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHH
Confidence 35556666766688888888876543322 0011111 112224445667888889999999999999988887
Q ss_pred HHhcC---C------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 81 ALKIE---S------SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 81 al~l~---p------~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.+.. | -.+..+|-.|..+...|+.+.|...|.+..
T Consensus 387 ~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~ 431 (608)
T PF10345_consen 387 MRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPR 431 (608)
T ss_pred HHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhH
Confidence 77652 2 247789999999999999999999998433
No 379
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.34 E-value=70 Score=37.14 Aligned_cols=72 Identities=8% Similarity=0.117 Sum_probs=52.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+..-|+.+|..|.|+.|--.|+..- -|..+|..+..+|+|..|+..+++|-.
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vS--------------------------N~a~La~TLV~LgeyQ~AVD~aRKAns 1248 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVS--------------------------NFAKLASTLVYLGEYQGAVDAARKANS 1248 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhh--------------------------hHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 456778999999999999988886542 577889999999999999999998843
Q ss_pred cCCCchHHHHHHHHHHHhccChH
Q 035535 84 IESSHFKALLCKGKILLSLNRYS 106 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~ 106 (518)
.+.|-.-+.+....++|.
T Consensus 1249 -----~ktWK~VcfaCvd~~EFr 1266 (1666)
T KOG0985|consen 1249 -----TKTWKEVCFACVDKEEFR 1266 (1666)
T ss_pred -----hhHHHHHHHHHhchhhhh
Confidence 344444444443333333
No 380
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=57.12 E-value=64 Score=32.68 Aligned_cols=62 Identities=18% Similarity=0.117 Sum_probs=50.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIE--SSHFKALLCKGKILLSLNRYSMALDCFKETL-VD 118 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~--p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~ 118 (518)
+-.|||.+..+..-...++...+....-. ..+...+--+|-.+.++|+.++|...|++++ +-
T Consensus 331 V~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La 395 (415)
T COG4941 331 VTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALA 395 (415)
T ss_pred EeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhc
Confidence 56799999998888888888877665541 2355566778999999999999999999999 54
No 381
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=57.00 E-value=35 Score=31.93 Aligned_cols=56 Identities=14% Similarity=0.233 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~ 76 (518)
....|. ++.+.+.++|+..|.++|++.+.+.. .+++ .+..+|.++.++|+++.|--
T Consensus 144 q~aLAt-yY~krD~~Kt~~ll~~~L~l~~~~~~---~n~e-----------il~sLas~~~~~~~~e~AYi 199 (203)
T PF11207_consen 144 QYALAT-YYTKRDPEKTIQLLLRALELSNPDDN---FNPE-----------ILKSLASIYQKLKNYEQAYI 199 (203)
T ss_pred HHHHHH-HHHccCHHHHHHHHHHHHHhcCCCCC---CCHH-----------HHHHHHHHHHHhcchhhhhh
Confidence 333444 44578999999999999999866522 2233 88999999999999998853
No 382
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=56.34 E-value=91 Score=29.93 Aligned_cols=111 Identities=12% Similarity=0.176 Sum_probs=60.5
Q ss_pred HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH-HHH-HHHHHHHHh-cC-CCch
Q 035535 14 LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF-DNA-LRDCEQALK-IE-SSHF 89 (518)
Q Consensus 14 ~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~-~~A-l~~~~~al~-l~-p~~~ 89 (518)
|.-|+|+.|++....||+..-..|+.-. ......++--.++-|....+.|.. +-. ...+..... .| |+.+
T Consensus 94 ~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~------R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~v 167 (230)
T PHA02537 94 FDIGDFDGALEIAEYALEHGLTMPDQFR------RTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEV 167 (230)
T ss_pred eeccCHHHHHHHHHHHHHcCCCCCcccc------CCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHH
Confidence 5679999999999999987533222000 011223333455566666666652 111 222222221 22 5555
Q ss_pred HHHHH--HHHHHH---------hccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 90 KALLC--KGKILL---------SLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 90 ka~~~--~g~al~---------~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
.|-+. .|..++ ..++...|+..|++|+ ++| ..+-...+..+
T Consensus 168 rAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~-k~GVK~~i~~l 220 (230)
T PHA02537 168 RAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLND-KCGVKKDIERL 220 (230)
T ss_pred HHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC-CCChHHHHHHH
Confidence 55444 455553 3467789999999999 664 33333334333
No 383
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=56.25 E-value=73 Score=25.07 Aligned_cols=59 Identities=14% Similarity=0.082 Sum_probs=44.8
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCch---HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIESSHF---KALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~---ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
....|.=++...+..+|+.-..+|++..++.+ .++-.+..+|...|+|.+++++-.+-+
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~ 70 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQL 70 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44556666778899999999999999876654 455566778889999999887765544
No 384
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=56.13 E-value=1.7e+02 Score=32.39 Aligned_cols=104 Identities=17% Similarity=0.078 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELL-LREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~-~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+......|..++ ...++++|..+.++++.+...+.- ..+...+.+-++.++.+.+... |+..++++
T Consensus 59 a~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~------------~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~ 125 (608)
T PF10345_consen 59 ARVRLRLASILLEETENLDLAETYLEKAILLCERHRL------------TDLKFRCQFLLARIYFKTNPKA-ALKNLDKA 125 (608)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch------------HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHH
Confidence 445567888888 678999999999999998755221 1111224445588888888777 99999999
Q ss_pred HhcCCC----chHHHHHHHHHHHh--ccChHHHHHHHHHHHhcc
Q 035535 82 LKIESS----HFKALLCKGKILLS--LNRYSMALDCFKETLVDA 119 (518)
Q Consensus 82 l~l~p~----~~ka~~~~g~al~~--lg~~~~A~~~~~~al~~p 119 (518)
++.--+ .+.-.|++-++-+. .+++..|++.++.....+
T Consensus 126 I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a 169 (608)
T PF10345_consen 126 IEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLA 169 (608)
T ss_pred HHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHh
Confidence 987443 34445555433222 369999999999888443
No 385
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.85 E-value=35 Score=34.76 Aligned_cols=34 Identities=12% Similarity=0.259 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+..+...|+.++..++|..|...|+.|..+...
T Consensus 40 ~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~e 73 (400)
T KOG4563|consen 40 TLEELVQAGRRALCNNDIDKAVDALSEATELSDE 73 (400)
T ss_pred HHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHH
Confidence 3677889999999999999999999999988644
No 386
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=54.98 E-value=1.1e+02 Score=34.92 Aligned_cols=83 Identities=23% Similarity=0.155 Sum_probs=65.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI--- 84 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l--- 84 (518)
-+|.....+|++++|+..-+.++..-|.... .....++++.|.+..-.|++.+|+.....+.++
T Consensus 463 L~a~val~~~~~e~a~~lar~al~~L~~~~~-------------~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~ 529 (894)
T COG2909 463 LRAQVALNRGDPEEAEDLARLALVQLPEAAY-------------RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQ 529 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhcccccc-------------hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHH
Confidence 3577778899999999999999999887654 123458999999999999999999999998887
Q ss_pred -CCCch--HHHHHHHHHHHhcc
Q 035535 85 -ESSHF--KALLCKGKILLSLN 103 (518)
Q Consensus 85 -~p~~~--ka~~~~g~al~~lg 103 (518)
+.-+. .+.+-.+.++...|
T Consensus 530 ~~~~~l~~~~~~~~s~il~~qG 551 (894)
T COG2909 530 HDVYHLALWSLLQQSEILEAQG 551 (894)
T ss_pred cccHHHHHHHHHHHHHHHHHhh
Confidence 33332 34455677777777
No 387
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.80 E-value=1.4e+02 Score=32.27 Aligned_cols=71 Identities=13% Similarity=0.088 Sum_probs=50.7
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
...+..+...|+-+.|+..++.++. + ..++.....++.+|-++.-+.+|..|..+++.....+
T Consensus 271 l~~ar~l~~~g~~eaa~~~~~~~v~--~--------------~~kQ~~~l~~fE~aw~~v~~~~~~~aad~~~~L~des- 333 (546)
T KOG3783|consen 271 LMEARILSIKGNSEAAIDMESLSIP--I--------------RMKQVKSLMVFERAWLSVGQHQYSRAADSFDLLRDES- 333 (546)
T ss_pred HHHHHHHHHcccHHHHHHHHHhccc--H--------------HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh-
Confidence 4456666677777777777777776 1 1234455688999999999999999999998877665
Q ss_pred CchHHHHH
Q 035535 87 SHFKALLC 94 (518)
Q Consensus 87 ~~~ka~~~ 94 (518)
++.+++|.
T Consensus 334 dWS~a~Y~ 341 (546)
T KOG3783|consen 334 DWSHAFYT 341 (546)
T ss_pred hhhHHHHH
Confidence 46666654
No 388
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=54.08 E-value=89 Score=30.65 Aligned_cols=81 Identities=15% Similarity=0.151 Sum_probs=70.3
Q ss_pred cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHH-HHHHHHHHHHhcCCCchHHHHHHH
Q 035535 18 EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFD-NALRDCEQALKIESSHFKALLCKG 96 (518)
Q Consensus 18 ~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~-~Al~~~~~al~l~p~~~ka~~~~g 96 (518)
+..+-++..++.++-.|.+.. +|..|-.+.-.+|++. .-++.+..++..|..|..+|-.+-
T Consensus 93 dL~~El~~l~eI~e~npKNYQ------------------vWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRq 154 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNYQ------------------VWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQ 154 (318)
T ss_pred HHHHHHHHHHHHHHhCccchh------------------HHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHH
Confidence 345557777888888887765 8999988888999988 889999999999999999999999
Q ss_pred HHHHhccChHHHHHHHHHHH
Q 035535 97 KILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 97 ~al~~lg~~~~A~~~~~~al 116 (518)
.++...+.|+.-+.+..+.+
T Consensus 155 W~~r~F~~~~~EL~y~~~Ll 174 (318)
T KOG0530|consen 155 WVLRFFKDYEDELAYADELL 174 (318)
T ss_pred HHHHHHhhHHHHHHHHHHHH
Confidence 99999999999988888777
No 389
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=53.93 E-value=77 Score=24.91 Aligned_cols=31 Identities=13% Similarity=-0.055 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLC 33 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~ 33 (518)
+-...++|-.+=..|+.++|+.+|+++++..
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 4456677777778899999999999999865
No 390
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=53.87 E-value=79 Score=29.65 Aligned_cols=50 Identities=20% Similarity=0.176 Sum_probs=31.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCC----chHHHHHHHHHHHhccChHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIESS----HFKALLCKGKILLSLNRYSMA 108 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~----~~ka~~~~g~al~~lg~~~~A 108 (518)
.+.+|.-|. ..+.++|+..+.++|++.+. ++..+..++.+++.+++++.|
T Consensus 144 q~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 144 QYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 333443333 55677777777777776422 466777777777777777766
No 391
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=53.48 E-value=56 Score=25.42 Aligned_cols=23 Identities=9% Similarity=0.140 Sum_probs=10.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
.+..+|.-+-+.|++.+|+..|+
T Consensus 8 ~~a~~AVe~D~~gr~~eAi~~Y~ 30 (75)
T cd02682 8 KYAINAVKAEKEGNAEDAITNYK 30 (75)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHH
Confidence 34444444444455544444433
No 392
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=53.47 E-value=2.2e+02 Score=29.52 Aligned_cols=63 Identities=21% Similarity=0.193 Sum_probs=50.0
Q ss_pred HHHHHHHHHHh---ccCHHHHHHHHHHHH-hcCCCchHHHHHHHHHHHhc---------cChHHHHHHHHHHH-hcc
Q 035535 57 ALSNRAEARSR---LRDFDNALRDCEQAL-KIESSHFKALLCKGKILLSL---------NRYSMALDCFKETL-VDA 119 (518)
Q Consensus 57 ~~~nra~a~~~---lg~~~~Al~~~~~al-~l~p~~~ka~~~~g~al~~l---------g~~~~A~~~~~~al-~~p 119 (518)
+....|.|+-+ .|+.++|+..+..++ ..++.++..+--.|.+|-.+ ...++|+..|.++- ..|
T Consensus 181 i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~ 257 (374)
T PF13281_consen 181 IKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP 257 (374)
T ss_pred HHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc
Confidence 56677788878 899999999999954 55677889999999988643 24678999999998 554
No 393
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=53.32 E-value=23 Score=29.06 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=22.1
Q ss_pred EEEEEEcCCCCCCCeEEeecCCCC
Q 035535 335 YIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 335 ~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
.+.+.-.+.|..|++++++|.++.
T Consensus 76 tVTLTL~~~V~~Gq~VTVsYt~ps 99 (101)
T TIGR02059 76 TITLTLAQVVEDGDEVTLSYTKNS 99 (101)
T ss_pred EEEEEecccccCCCEEEEEeeCCC
Confidence 889999999999999999998864
No 394
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=52.52 E-value=9.7 Score=27.96 Aligned_cols=18 Identities=44% Similarity=0.525 Sum_probs=13.0
Q ss_pred EEEEcCCCCCCCeEEeec
Q 035535 337 IVHASRDVKAGEEITFAY 354 (518)
Q Consensus 337 ~v~A~rdI~~Geeit~sY 354 (518)
++.|.+||++|+.|+-+=
T Consensus 3 vvVA~~di~~G~~i~~~d 20 (63)
T PF08666_consen 3 VVVAARDIPAGTVITAED 20 (63)
T ss_dssp EEEESSTB-TT-BECTTT
T ss_pred EEEEeCccCCCCEEccCC
Confidence 578999999999996543
No 395
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=51.51 E-value=24 Score=21.26 Aligned_cols=22 Identities=5% Similarity=0.274 Sum_probs=18.5
Q ss_pred hcHHHHHHHHHHHHHHhhcccc
Q 035535 17 EEWKESVQVYTQFIDLCQSQIT 38 (518)
Q Consensus 17 g~~~~Ai~~y~~Al~~~p~~~~ 38 (518)
|+++.|...|++++...|..+.
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~ 22 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE 22 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH
Confidence 5688999999999999886654
No 396
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=51.18 E-value=61 Score=30.91 Aligned_cols=66 Identities=12% Similarity=0.109 Sum_probs=53.6
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
..-..++++.+...+||..-..-++..|.+.. ...-+=..+.-.|+|++|+..++-+-+++|
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~------------------~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p 66 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAG------------------GRHFLFQLLCVAGDWEKALAQLNLAATLSP 66 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhcCCcccc------------------chhHHHHHHhhcchHHHHHHHHHHHhhcCc
Confidence 44456788999999999999999999998876 333344556668999999999999999999
Q ss_pred CchH
Q 035535 87 SHFK 90 (518)
Q Consensus 87 ~~~k 90 (518)
++.+
T Consensus 67 ~~t~ 70 (273)
T COG4455 67 QDTV 70 (273)
T ss_pred ccch
Confidence 8754
No 397
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=49.62 E-value=51 Score=32.75 Aligned_cols=57 Identities=18% Similarity=0.098 Sum_probs=43.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
+...+..+...|.+.+|++..++++.++|-+.. .+.-+-..+..+|+--.|++.+++
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~------------------~nk~lm~~la~~gD~is~~khyer 338 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQ------------------DNKGLMASLATLGDEISAIKHYER 338 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhH------------------HHHHHHHHHHHhccchhhhhHHHH
Confidence 344567788999999999999999999998755 455555677778886666666554
No 398
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=49.48 E-value=1.3e+02 Score=29.57 Aligned_cols=75 Identities=17% Similarity=0.135 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCchHHHHH
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRDCEQALKIESSHFKALLC 94 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~~~~al~l~p~~~ka~~~ 94 (518)
...|+..|.+|-... ++. +..+++.+|.. -.++.+|+.++.+|-+... ..+.+.
T Consensus 171 ~~~A~~~~~~aa~~~--~~~------------------a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~ 228 (292)
T COG0790 171 DKKALYLYRKAAELG--NPD------------------AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYN 228 (292)
T ss_pred HHhHHHHHHHHHHhc--CHH------------------HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHH
Confidence 347888888877654 111 77888877765 3489999999999999887 889999
Q ss_pred HHHHHHhcc---------------ChHHHHHHHHHHH
Q 035535 95 KGKILLSLN---------------RYSMALDCFKETL 116 (518)
Q Consensus 95 ~g~al~~lg---------------~~~~A~~~~~~al 116 (518)
++ +++.-| +...|...+.++.
T Consensus 229 ~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~ 264 (292)
T COG0790 229 LG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKAC 264 (292)
T ss_pred HH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHH
Confidence 99 666555 6667777777666
No 399
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.27 E-value=3.8e+02 Score=34.39 Aligned_cols=99 Identities=15% Similarity=0.076 Sum_probs=73.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.|.++...=-...+..+-|-.+++++...-.++. +...+..+|++.|..-.+.|+++.|-...-.|.+.
T Consensus 1631 ~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~-----------~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~ 1699 (2382)
T KOG0890|consen 1631 NWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSN-----------LKSRLGECWLQSARIARLAGHLQRAQNALLNAKES 1699 (2382)
T ss_pred hHHHHHHHhchhHHHHhHHHHHHHHHHHHhcccc-----------ccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc
Confidence 3444444333344466677777777654322111 11233449999999999999999999999999888
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
. -++++.-+|+.+...|+-..|+..+++.+
T Consensus 1700 r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1700 R--LPEIVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred c--cchHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 7 57899999999999999999999999999
No 400
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.64 E-value=86 Score=24.39 Aligned_cols=16 Identities=13% Similarity=0.260 Sum_probs=11.9
Q ss_pred hccChHHHHHHHHHHH
Q 035535 101 SLNRYSMALDCFKETL 116 (518)
Q Consensus 101 ~lg~~~~A~~~~~~al 116 (518)
..|+|++|++.|..++
T Consensus 18 ~~gny~eA~~lY~~al 33 (75)
T cd02680 18 EKGNAEEAIELYTEAV 33 (75)
T ss_pred HhhhHHHHHHHHHHHH
Confidence 5577777777777777
No 401
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=48.55 E-value=48 Score=35.10 Aligned_cols=92 Identities=14% Similarity=0.137 Sum_probs=64.3
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF 89 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ 89 (518)
+...-..|+|+.|.+..+-+-.....-.. +.--+-.-+.+++++++|+..+...+.-.-..+
T Consensus 330 ~~i~~~lg~ye~~~~~~s~~~~~~~s~~~------------------~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ 391 (831)
T PRK15180 330 SVIFSHLGYYEQAYQDISDVEKIIGTTDS------------------TLRCRLRSLHGLARWREALSTAEMMLSNEIEDE 391 (831)
T ss_pred HHHHHHhhhHHHHHHHhhchhhhhcCCch------------------HHHHHHHhhhchhhHHHHHHHHHHHhccccCCh
Confidence 34445667777777776654333221111 233334456789999999999999988776677
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+.+---+..-..+|-+++|...+++.+ +.|
T Consensus 392 ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~ 422 (831)
T PRK15180 392 EVLTVAAGSADALQLFDKSYHYWKRVLLLNP 422 (831)
T ss_pred hheeeecccHHHHhHHHHHHHHHHHHhccCC
Confidence 777666777788999999999999998 443
No 402
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=48.41 E-value=73 Score=33.28 Aligned_cols=85 Identities=11% Similarity=0.107 Sum_probs=56.1
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhc--------CCCc--------hHH--HHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 59 SNRAEARSRLRDFDNALRDCEQALKI--------ESSH--------FKA--LLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 59 ~nra~a~~~lg~~~~Al~~~~~al~l--------~p~~--------~ka--~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
..=|..+++.++|..|..-+..||++ +|.. ... --.+..||+.+++.+.|+....+.+ ..|
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP 259 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNP 259 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCc
Confidence 33455566777777766666666655 2211 112 2357889999999999999999999 888
Q ss_pred ccCCcHHHHHHHHHHHHHHHHHhh
Q 035535 120 QASGSLETVNGFLEKSKKLEYQSR 143 (518)
Q Consensus 120 ~~~~~~~~l~~~l~~~~~~~~~~~ 143 (518)
.++-++-.-....+.+.+.-+..+
T Consensus 260 ~~frnHLrqAavfR~LeRy~eAar 283 (569)
T PF15015_consen 260 SYFRNHLRQAAVFRRLERYSEAAR 283 (569)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHH
Confidence 777765544455555566554443
No 403
>KOG2155 consensus Tubulin-tyrosine ligase-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=48.10 E-value=17 Score=37.74 Aligned_cols=58 Identities=31% Similarity=0.470 Sum_probs=44.6
Q ss_pred ccccccCCCCCCceEE---eeCC---EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCC
Q 035535 315 LASFINHSCSPNARRV---HVGD---YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWG 372 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~---~~~~---~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~ 372 (518)
..|++.||-.||.... |-.. .-++.-++++..|||||-.+.........|+..+..|.
T Consensus 204 fGsrvrHsdePnf~~aPf~fmPq~vaYsimwp~k~~~tgeE~trDfasg~~~p~~Rk~~l~pWa 267 (631)
T KOG2155|consen 204 FGSRVRHSDEPNFRIAPFMFMPQNVAYSIMWPTKPVNTGEEITRDFASGVIHPEWRKYILQPWA 267 (631)
T ss_pred hhhhhccCCCCcceeeeheecchhcceeEEeeccCCCCchHHHHHHhhcCCCHHHHHHHhcccc
Confidence 4689999999998754 3333 45688999999999999999877666667776555553
No 404
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=47.55 E-value=1.4e+02 Score=33.38 Aligned_cols=70 Identities=11% Similarity=0.026 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535 54 LCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLE 133 (518)
Q Consensus 54 l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~ 133 (518)
+..++.|.|..+..+.++++|.++|.+.-. .-+...+|+.+..|++-..+-+ ..|++++....+.+.+.
T Consensus 795 ~e~A~r~ig~~fa~~~~We~A~~yY~~~~~--------~e~~~ecly~le~f~~LE~la~---~Lpe~s~llp~~a~mf~ 863 (1189)
T KOG2041|consen 795 KEDAFRNIGETFAEMMEWEEAAKYYSYCGD--------TENQIECLYRLELFGELEVLAR---TLPEDSELLPVMADMFT 863 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccc--------hHhHHHHHHHHHhhhhHHHHHH---hcCcccchHHHHHHHHH
Confidence 455999999999999999999999987532 2355678888888876443322 55666665555555443
Q ss_pred H
Q 035535 134 K 134 (518)
Q Consensus 134 ~ 134 (518)
.
T Consensus 864 s 864 (1189)
T KOG2041|consen 864 S 864 (1189)
T ss_pred h
Confidence 3
No 405
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=46.10 E-value=25 Score=30.08 Aligned_cols=30 Identities=13% Similarity=0.403 Sum_probs=26.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcc
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQ 36 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~ 36 (518)
...|..+..+|++++|+.+|-+||..+|..
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP 96 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQP 96 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCH
Confidence 468999999999999999999999998874
No 406
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=45.57 E-value=52 Score=39.01 Aligned_cols=103 Identities=17% Similarity=0.197 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+....+.|.....++.|.+|.+ ..+++.+..+-.. -+....+..|..+|..+.+++++++|+....+|.
T Consensus 932 a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~----------~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ 1000 (1236)
T KOG1839|consen 932 AKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMG----------VLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKAC 1000 (1236)
T ss_pred hhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhh----------hcchhHHHHHHHHHHHHhhhcchHHHHHhcccce
Confidence 5667788889999999999988 7777766543211 1122234488999999999999999999988876
Q ss_pred hc-------C-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI-------E-SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l-------~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
-+ | |+...+|..++...+...+...|+..+.+++
T Consensus 1001 ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~ 1042 (1236)
T KOG1839|consen 1001 IISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRAL 1042 (1236)
T ss_pred eeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHH
Confidence 54 3 4567789999999999999999999998887
No 407
>PF12854 PPR_1: PPR repeat
Probab=45.21 E-value=49 Score=21.04 Aligned_cols=27 Identities=15% Similarity=0.026 Sum_probs=20.7
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHH
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKE 114 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~ 114 (518)
+.-.|..+-..|...|+.++|.+.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 556677777888888888888887764
No 408
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=44.89 E-value=1.5e+02 Score=26.08 Aligned_cols=34 Identities=18% Similarity=0.023 Sum_probs=26.8
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
-+..++..++.+|.+|..+|+..+|-+.+++|-.
T Consensus 115 n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe 148 (161)
T PF09205_consen 115 NEEINPEFLVKIANAYKKLGNTREANELLKEACE 148 (161)
T ss_dssp ---S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 3456789999999999999999999999999873
No 409
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=44.54 E-value=51 Score=20.34 Aligned_cols=29 Identities=21% Similarity=0.260 Sum_probs=23.2
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhc
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKILLSL 102 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al~~l 102 (518)
.++.+..++..+|.+..+|..+-.++..+
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 46788899999999999998776665543
No 410
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=44.48 E-value=64 Score=29.75 Aligned_cols=48 Identities=10% Similarity=-0.007 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
....++..++.++..| ++..+.+.+.++..+|+.++|.+..+++. ..|
T Consensus 127 l~~~~~~a~~~l~~~P-~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 127 LEAYIEWAERLLRRRP-DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4566677788888888 78889999999999999999999999999 666
No 411
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.07 E-value=50 Score=35.96 Aligned_cols=51 Identities=24% Similarity=0.223 Sum_probs=40.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 61 ra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
|=.+.+++|+++.|.+.+.++ ++..-|-.+|.+....+++..|.+||.++.
T Consensus 643 rFelal~lgrl~iA~~la~e~-----~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLAVEA-----NSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhhhhhcCcHHHHHHHHHhh-----cchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 345667889998888755544 455668889999999999999999999975
No 412
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=43.95 E-value=1.1e+02 Score=31.43 Aligned_cols=48 Identities=21% Similarity=0.187 Sum_probs=43.0
Q ss_pred ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 68 LRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 68 lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
....-+|+-.++.++..+|.|+...+.+..+|..+|-...|.+.|...
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~L 243 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYESL 243 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHhc
Confidence 345678899999999999999999999999999999999999998653
No 413
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=42.78 E-value=4.8e+02 Score=28.62 Aligned_cols=98 Identities=11% Similarity=-0.034 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..|+.--.--...|++....-.|.+++--+..... .|.+.+.-....|+-.-|-....++.+
T Consensus 298 ~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~e------------------fWiky~~~m~~~~~~~~~~~~~~~~~~ 359 (577)
T KOG1258|consen 298 KNWRYYLDFEITLGDFSRVFILFERCLIPCALYDE------------------FWIKYARWMESSGDVSLANNVLARACK 359 (577)
T ss_pred HHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHH------------------HHHHHHHHHHHcCchhHHHHHHHhhhh
Confidence 34444444556789999999999999876666544 788888877777888888877778877
Q ss_pred cC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 84 IE-SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 84 l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+. |..+-.+..-+..-...|++..|...|++.. ..|
T Consensus 360 i~~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~p 397 (577)
T KOG1258|consen 360 IHVKKTPIIHLLEARFEESNGNFDDAKVILQRIESEYP 397 (577)
T ss_pred hcCCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhCC
Confidence 74 6666666777777778889999999999988 444
No 414
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=42.25 E-value=1.1e+02 Score=32.63 Aligned_cols=30 Identities=13% Similarity=0.214 Sum_probs=27.0
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+++.-|-++|...+..|+++-|.++|+++-
T Consensus 345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 345 DDPEKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 467789999999999999999999999853
No 415
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=41.12 E-value=3.5e+02 Score=28.39 Aligned_cols=101 Identities=16% Similarity=0.058 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH------------
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF------------ 71 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~------------ 71 (518)
..++..|..+|-.|+|+-|...|.-+..-..++. -..-++.++-..|.+++..+..
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dk------------aw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~ 276 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKNDK------------AWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEP 276 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhch------------hHHHHHhHHHHHHHHHHhcCCCCccccccccHHH
Confidence 3568899999999999999999998886443321 1223334555566666665532
Q ss_pred --HHHHHHHHHH----HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 72 --DNALRDCEQA----LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 72 --~~Al~~~~~a----l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.|...|.++ ......-..+.+-.+.++...+.|.+|...+-+..
T Consensus 277 ~le~A~~~Y~~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~ 327 (414)
T PF12739_consen 277 YLENAYYTYLKSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWT 327 (414)
T ss_pred HHHHHHHHHHhhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 3333334442 11112234455666667777777777776665555
No 416
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=40.78 E-value=70 Score=26.59 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+.....+|-..+..|||..|.....++-+..+
T Consensus 59 a~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~ 90 (108)
T PF07219_consen 59 AQRALSRGLIALAEGDWQRAEKLLAKAAKLSD 90 (108)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 45566788899999999999999999966533
No 417
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=39.84 E-value=1.1e+02 Score=27.47 Aligned_cols=70 Identities=16% Similarity=0.024 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH-hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDL-CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~-~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+.....+|.+++.|+...|.+...-+-.- .-....-|-.+. ....++|..++..|+|.+|-..+..|
T Consensus 75 ~~~ai~~a~~~l~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~-----------~~av~~A~~ll~~~k~~eA~~aL~~A 143 (155)
T PF10938_consen 75 KKAAIKTANELLKKGDKQAAREILKLAGSEIDITTALLPLAQT-----------PAAVKQAAALLDEGKYYEANAALKQA 143 (155)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHTT-EEEEEEEEEEHHHH-----------HHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHhcccceeeeeeCCHHhh-----------HHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 456788999999999999999888765321 111111111111 15678999999999999999988888
Q ss_pred Hh
Q 035535 82 LK 83 (518)
Q Consensus 82 l~ 83 (518)
+.
T Consensus 144 ~~ 145 (155)
T PF10938_consen 144 LD 145 (155)
T ss_dssp HH
T ss_pred hc
Confidence 64
No 418
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=39.46 E-value=1.5e+02 Score=27.30 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=39.0
Q ss_pred HhccCHHHHHHHHHHHHhcCCCch--HHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 66 SRLRDFDNALRDCEQALKIESSHF--KALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 66 ~~lg~~~~Al~~~~~al~l~p~~~--ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
...+..++|+..+...-+-+-... -+.++.|.++...|+...|+..|..+-.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d 123 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD 123 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc
Confidence 345778888888777655554443 36678888888889999999999887754
No 419
>KOG2168 consensus Cullins [Cell cycle control, cell division, chromosome partitioning]
Probab=37.93 E-value=3.7e+02 Score=30.77 Aligned_cols=100 Identities=11% Similarity=-0.023 Sum_probs=55.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-------CHHHHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-------DFDNALRDCE 79 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-------~~~~Al~~~~ 79 (518)
.+-|..+-..|.|++||.+|..|=+.+.-- ..+-.+++.+..... +...=.....
T Consensus 626 ~~vA~~a~~~G~~~~sI~LY~lag~yd~al------------------~link~LS~~l~~~~~~~~n~erl~~La~~~~ 687 (835)
T KOG2168|consen 626 LEVASEADEDGLFEDAILLYHLAGDYDKAL------------------ELINKLLSQVLHSPTLGQSNKERLGDLALSMN 687 (835)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHhhhhhHHH------------------HHHHHHHHHHHhhcccCCcchhhHHHHHHHHH
Confidence 345677778999999999998775543211 113334444443321 1111122222
Q ss_pred HHHhcCCCchH-----HH-----HHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535 80 QALKIESSHFK-----AL-----LCKGKILLSLNRYSMALDCFKETLVDAQASGS 124 (518)
Q Consensus 80 ~al~l~p~~~k-----a~-----~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~ 124 (518)
..+.-+|.++. ++ +....=++..+++++|+..++...+.|.++..
T Consensus 688 ~~y~~~~~~~~~~~~~t~~lLl~~~~~f~~y~~~~~e~aL~~le~l~LiP~~~~~ 742 (835)
T KOG2168|consen 688 DIYESNKGDSAKVVVKTLSLLLDLVSFFDLYHNGEWEEALSILEHLDLIPLDPLS 742 (835)
T ss_pred HHHHhccCcchhhHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccCCChhh
Confidence 33333443322 11 12233467889999999999988787765544
No 420
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=37.19 E-value=4e+02 Score=25.94 Aligned_cols=96 Identities=14% Similarity=0.059 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC--------HHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD--------FDNAL 75 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~--------~~~Al 75 (518)
+-+..=+..+++.|++.-|.+.-.-.|+....... ..+.+ ...++..+...+.. ...|+
T Consensus 11 dLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~--~~~~~-----------~~~rl~~l~~~~~~~~p~r~~fi~~ai 77 (260)
T PF04190_consen 11 DLLYSGALILLKHGQYGSGADLALLLIEVYEKSED--PVDEE-----------SIARLIELISLFPPEEPERKKFIKAAI 77 (260)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----SHH-----------HHHHHHHHHHHS-TT-TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCC--CCCHH-----------HHHHHHHHHHhCCCCcchHHHHHHHHH
Confidence 34445555666677777666665555554333211 00111 12344444444432 23444
Q ss_pred HHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHH
Q 035535 76 RDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 76 ~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
.+. +.-...-.++..+...|..|...++|.+|..+|-
T Consensus 78 ~WS-~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl 114 (260)
T PF04190_consen 78 KWS-KFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFL 114 (260)
T ss_dssp HHH-HTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHH-ccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 444 2212223578999999999999999999998884
No 421
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=34.71 E-value=5.3e+02 Score=26.82 Aligned_cols=60 Identities=10% Similarity=0.037 Sum_probs=42.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--cCHHHHHHHHHH
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL--RDFDNALRDCEQ 80 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l--g~~~~Al~~~~~ 80 (518)
.++..+|++++|..|...|..++...+.... +.....+.+++.+|... -++++|.+.+++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~-------------~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRRLLSAVN-------------HTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhcccChhh-------------hhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 4667899999999999999999987543111 01122666777776654 478899988874
No 422
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=33.03 E-value=4.8e+02 Score=26.09 Aligned_cols=60 Identities=5% Similarity=0.026 Sum_probs=42.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~ 76 (518)
.+.+|.+.+.+++++|+..|.+.+...- +.+..+.++ .-....+++..|...|++..--+
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~---s~dek~~nE-------qE~tvlel~~lyv~~g~~~~l~~ 66 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGV---SKDEKTLNE-------QEATVLELFKLYVSKGDYCSLGD 66 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCC---ChhhhhhhH-------HHHHHHHHHHHHHhcCCcchHHH
Confidence 5678999999999999999999987521 111122221 12278899999999998765433
No 423
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=32.24 E-value=1.4e+02 Score=29.20 Aligned_cols=95 Identities=14% Similarity=0.114 Sum_probs=61.5
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccch---hhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC-
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITE---TKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES- 86 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~---~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p- 86 (518)
..++..++.-.|+..|...+.-.|.+... +..+.++ .|.....++. .-....|++.++.||-.-.
T Consensus 3 ~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk----------~~~~Fs~~~s-~~~~~n~~e~~d~ALm~Ae~ 71 (368)
T COG5091 3 KALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEK----------LYFGFSDWHS-DATMENAKELLDKALMTAEG 71 (368)
T ss_pred cchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHH----------HHhhhhhhhc-ccChhhHHHHHHHHHHhhhc
Confidence 34555666777888888877766665431 1111111 3333444432 2345678888999886532
Q ss_pred --Cc---hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 87 --SH---FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 87 --~~---~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+. .-.-++.+.+|+.+.+|+.|..+|.+|+
T Consensus 72 r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~ 106 (368)
T COG5091 72 RGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAK 106 (368)
T ss_pred cCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHH
Confidence 11 2345788999999999999999999999
No 424
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.45 E-value=1.4e+02 Score=23.45 Aligned_cols=17 Identities=18% Similarity=0.448 Sum_probs=11.8
Q ss_pred CHHHHHHHHHHHHhcCC
Q 035535 70 DFDNALRDCEQALKIES 86 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p 86 (518)
.|+.|.+..++||..|-
T Consensus 4 ~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 4 YYKQAFEEISKALRADE 20 (79)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 46777777777777663
No 425
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=30.95 E-value=1.1e+02 Score=31.79 Aligned_cols=58 Identities=21% Similarity=0.194 Sum_probs=40.9
Q ss_pred HHHHhccCHHHHHHHHHHHHhc----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 63 EARSRLRDFDNALRDCEQALKI----ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 63 ~a~~~lg~~~~Al~~~~~al~l----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
..|+.-+.|+.|-....++.-- +..++.-+|.+|++..-.++|..|.++|-+|+ +.|+
T Consensus 217 r~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq 279 (493)
T KOG2581|consen 217 RNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQ 279 (493)
T ss_pred HHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcc
Confidence 3444455566655554444311 12456678899999999999999999999999 7765
No 426
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.40 E-value=2.6e+02 Score=30.74 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDL 32 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~ 32 (518)
..+|+++|+.+++.+++..|.+++.+|-++
T Consensus 666 ~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 666 EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 456777777777777777777777766543
No 427
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=30.26 E-value=86 Score=27.36 Aligned_cols=31 Identities=19% Similarity=0.226 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhccc
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQI 37 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~ 37 (518)
..+|..++.+|+++++..++..||.++|...
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 4689999999999999999999999987753
No 428
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=30.18 E-value=6.1e+02 Score=25.89 Aligned_cols=30 Identities=10% Similarity=0.056 Sum_probs=24.3
Q ss_pred chHHH--HHHHHHHHhccChHHHHHHHHHHHh
Q 035535 88 HFKAL--LCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 88 ~~ka~--~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+...| -|++.|-..+|+..+|++.|+...+
T Consensus 272 nvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 272 NVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred chhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 44444 4789999999999999999998773
No 429
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=29.17 E-value=3.7e+02 Score=30.41 Aligned_cols=25 Identities=24% Similarity=0.559 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHH
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKE 114 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~ 114 (518)
..|-+-|..+..+.++++|++||++
T Consensus 662 elydkagdlfeki~d~dkale~fkk 686 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKK 686 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHc
Confidence 3455667788888999999999887
No 430
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=28.88 E-value=3.3e+02 Score=22.44 Aligned_cols=47 Identities=13% Similarity=0.061 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN 103 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg 103 (518)
.....|..-+-.|+|..|.+...++-+..+...-.|.--+++-...|
T Consensus 61 ~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~l~~L~AA~AA~~~g 107 (108)
T PF07219_consen 61 RALSRGLIALAEGDWQRAEKLLAKAAKLSDNPLLNYLLAARAAQAQG 107 (108)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC
Confidence 44455556666667777777666665555444445554555544444
No 431
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=28.87 E-value=1.5e+02 Score=29.76 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=23.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
.+..++...=+.++|++|..+|..|+++.-.
T Consensus 12 ~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~ 42 (439)
T KOG0739|consen 12 DLVKKAIDEDNAKNYEEALRLYQNALEYFLH 42 (439)
T ss_pred HHHHHHhhhcchhchHHHHHHHHHHHHHHHH
Confidence 4455555566788999999999999987543
No 432
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=28.79 E-value=63 Score=36.22 Aligned_cols=81 Identities=20% Similarity=0.104 Sum_probs=62.5
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
+.+...++|..++...+-|+...|.... ++..|+.+|.-++.++-|+++..-....+|.++.
T Consensus 101 ~m~~~l~~~~~~~~E~~la~~~~p~i~~------------------~Ll~r~~~y~al~k~d~a~rdl~i~~~~~p~~~~ 162 (748)
T KOG4151|consen 101 YMQLGLGEYPKAIPECELALESQPRISK------------------ALLKRARKYEALNKLDLAVRDLRIVEKMDPSNVS 162 (748)
T ss_pred HhhcCccchhhhcCchhhhhhccchHHH------------------HHhhhhhHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence 4445677888888888888888777544 8888999999999999999998888899999977
Q ss_pred HHHHHHHHHHhccChHHHH
Q 035535 91 ALLCKGKILLSLNRYSMAL 109 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~ 109 (518)
+..........+..++-+.
T Consensus 163 ~~eif~elk~ll~~~d~~s 181 (748)
T KOG4151|consen 163 ASEIFEELKGLLELKDLAS 181 (748)
T ss_pred HHHHHHHHHHHHhhcCCcc
Confidence 7665555554444444443
No 433
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=28.72 E-value=4.6e+02 Score=30.83 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-----ChHHHHHHHHHHH-hcccc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-----RYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-----~~~~A~~~~~~al-~~p~~ 121 (518)
-|...|.+|.++|+|++-++.+.-|++.-|.++..-.-+-.+.+++. +-..|....--++ ..|..
T Consensus 554 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 624 (932)
T PRK13184 554 EYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREALVFMLLALWIAPEK 624 (932)
T ss_pred HHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 58899999999999999999999999999988764433333333322 2234444444455 45543
No 434
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=28.68 E-value=3.4e+02 Score=29.56 Aligned_cols=71 Identities=15% Similarity=0.076 Sum_probs=59.9
Q ss_pred HHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChH
Q 035535 27 TQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYS 106 (518)
Q Consensus 27 ~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~ 106 (518)
++-|+.+|.+.+ +|+-+-.-+... -++++.+++++.+..-|..+.+|.--....+...+|+
T Consensus 10 ~~rie~nP~di~------------------sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe 70 (656)
T KOG1914|consen 10 RERIEENPYDID------------------SWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFE 70 (656)
T ss_pred HHHHhcCCccHH------------------HHHHHHHHHccC-CHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHH
Confidence 556777777765 666655444333 8999999999999999999999999999999999999
Q ss_pred HHHHHHHHHH
Q 035535 107 MALDCFKETL 116 (518)
Q Consensus 107 ~A~~~~~~al 116 (518)
.-...|.++|
T Consensus 71 ~VEkLF~RCL 80 (656)
T KOG1914|consen 71 SVEKLFSRCL 80 (656)
T ss_pred HHHHHHHHHH
Confidence 9999999999
No 435
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=28.09 E-value=95 Score=18.29 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=14.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
|..+-.+|.+.|++++|.+.+++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4444555666666666666655544
No 436
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=28.04 E-value=1.1e+02 Score=22.90 Aligned_cols=14 Identities=36% Similarity=0.705 Sum_probs=5.6
Q ss_pred cChHHHHHHHHHHH
Q 035535 103 NRYSMALDCFKETL 116 (518)
Q Consensus 103 g~~~~A~~~~~~al 116 (518)
|+|++|++.|.+++
T Consensus 19 g~~~~A~~~Y~~ai 32 (69)
T PF04212_consen 19 GNYEEALELYKEAI 32 (69)
T ss_dssp TSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH
Confidence 34444444443333
No 437
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=27.96 E-value=1e+02 Score=32.19 Aligned_cols=66 Identities=18% Similarity=0.171 Sum_probs=42.6
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.-..+.-.|||..|+...+.. ++.....- .+........++..|-||+.+++|.+|+..+...+-.
T Consensus 128 LlRvh~LLGDY~~Alk~l~~i-dl~~~~l~---------~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENI-DLNKKGLY---------TKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred HHHHHHhccCHHHHHHHhhcc-Ccccchhh---------ccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334555678998888776432 22111100 0111123348999999999999999999999988743
No 438
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=27.89 E-value=5.2e+02 Score=27.39 Aligned_cols=103 Identities=17% Similarity=0.103 Sum_probs=58.9
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHH--HHHHHHhccCHH------HHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN--RAEARSRLRDFD------NALR 76 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~n--ra~a~~~lg~~~------~Al~ 76 (518)
.+..+|..++..+.|.+|+...-.|=+......+ .-.+ .+-..+..| +--||+++.+.. .-+.
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~---klLe------~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ 235 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDS---KLLE------LVDNYALLNLDIVWCYFRLKNITCLPDAEVRLV 235 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhH---HHHH------hhcchhhhhcchhheehhhcccccCChHHHHHH
Confidence 4678899999999999999888776554322111 0000 000113333 344667766431 1122
Q ss_pred HHHH------------HHhcC-CCc-hHH-----HHHHHHHHHhccChHHHHHHHHHHH
Q 035535 77 DCEQ------------ALKIE-SSH-FKA-----LLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 77 ~~~~------------al~l~-p~~-~ka-----~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
-|++ ...+. |.. .++ +.--|.+.+..|+-++|.++|+.+.
T Consensus 236 ra~kgf~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 236 RARKGFERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred HHHHhhhhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 2222 22222 222 223 3345889999999999999999987
No 439
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=27.38 E-value=75 Score=28.23 Aligned_cols=31 Identities=10% Similarity=0.109 Sum_probs=27.5
Q ss_pred HHHHHHHHhhh-cHHHHHHHHHHHHHHhhccc
Q 035535 7 RSKATELLLRE-EWKESVQVYTQFIDLCQSQI 37 (518)
Q Consensus 7 ~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~ 37 (518)
...|..++..| ++.+|+.+|.+||..+|+..
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~qP~ 125 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQPQ 125 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCCHH
Confidence 46899999999 99999999999999988743
No 440
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=27.30 E-value=5.4e+02 Score=33.20 Aligned_cols=63 Identities=14% Similarity=-0.026 Sum_probs=52.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+-|.+.+...-+.|.++.|-.+.-+|.+..+. . ++..+|.-+.+.|+-..|+...++.+
T Consensus 1670 ge~wLqsAriaR~aG~~q~A~nall~A~e~r~~--~------------------i~~E~AK~lW~~gd~~~Al~~Lq~~l 1729 (2382)
T KOG0890|consen 1670 GECWLQSARIARLAGHLQRAQNALLNAKESRLP--E------------------IVLERAKLLWQTGDELNALSVLQEIL 1729 (2382)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhhhhcccc--h------------------HHHHHHHHHHhhccHHHHHHHHHHHH
Confidence 456777777777889999998888888776532 1 89999999999999999999999999
Q ss_pred hcC
Q 035535 83 KIE 85 (518)
Q Consensus 83 ~l~ 85 (518)
+.+
T Consensus 1730 ~~~ 1732 (2382)
T KOG0890|consen 1730 SKN 1732 (2382)
T ss_pred Hhh
Confidence 764
No 441
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.94 E-value=5.4e+02 Score=26.14 Aligned_cols=81 Identities=9% Similarity=0.028 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC------c--hHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCc
Q 035535 53 SLCLALSNRAEARSRLRDFDNALRDCEQALKIESS------H--FKALLCKGKILLSLNRYSMALDCFKETLVDAQASGS 124 (518)
Q Consensus 53 ~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~------~--~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~ 124 (518)
-.+.+...+|..|-+-++|..|-..+. ++.++.. . ...+.+.|.+|+..++..+|..+..++-....+. +
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~-~ 178 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAES-S 178 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcc-c
Confidence 345678889999999999998877553 3444431 1 2356789999999999999999999887433344 3
Q ss_pred HHHHHHHHHHH
Q 035535 125 LETVNGFLEKS 135 (518)
Q Consensus 125 ~~~l~~~l~~~ 135 (518)
.+.+...++.|
T Consensus 179 Ne~Lqie~kvc 189 (399)
T KOG1497|consen 179 NEQLQIEYKVC 189 (399)
T ss_pred CHHHHHHHHHH
Confidence 35555555554
No 442
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=26.45 E-value=77 Score=25.69 Aligned_cols=18 Identities=17% Similarity=0.412 Sum_probs=15.9
Q ss_pred cEEEEeccCCCCcEEEEe
Q 035535 181 RGLFATKNVEAGTLFLVT 198 (518)
Q Consensus 181 rg~~a~~~i~~GelIl~e 198 (518)
-.++|+++|++||-|++.
T Consensus 98 ~~~~a~r~I~~GeEi~i~ 115 (116)
T smart00317 98 IVIFALRDIKPGEELTID 115 (116)
T ss_pred EEEEECCCcCCCCEEeec
Confidence 678999999999999864
No 443
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=25.99 E-value=7.3e+02 Score=25.69 Aligned_cols=62 Identities=16% Similarity=0.013 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhc-CCCc-hHHHHHHHHHHH--hccChHHHHHHHHHHHh
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKI-ESSH-FKALLCKGKILL--SLNRYSMALDCFKETLV 117 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l-~p~~-~ka~~~~g~al~--~lg~~~~A~~~~~~al~ 117 (518)
.....++...+..++|..|.+.++..... .+.. ...+..+..+|. ..-+|++|.+.+++.+.
T Consensus 132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35667888899999999999999999884 4433 235555555554 56788999999999873
No 444
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=25.44 E-value=3.2e+02 Score=21.16 Aligned_cols=22 Identities=23% Similarity=0.231 Sum_probs=9.9
Q ss_pred HHHHHHHhccCHHHHHHHHHHH
Q 035535 60 NRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+|.-.=+.|+|++|+..|..+
T Consensus 11 ~~Ave~D~~g~y~eAl~~Y~~a 32 (77)
T cd02683 11 KRAVELDQEGRFQEALVCYQEG 32 (77)
T ss_pred HHHHHHHHhccHHHHHHHHHHH
Confidence 3333344445555555444443
No 445
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=25.30 E-value=8.1e+02 Score=25.71 Aligned_cols=60 Identities=18% Similarity=0.236 Sum_probs=47.4
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC--hHHHHHHHHHHH-hccccCCc
Q 035535 65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNR--YSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~--~~~A~~~~~~al-~~p~~~~~ 124 (518)
..+..-.++-+.....+++.+|+..-+|+.+..++...+. +..=++...+++ .+|.+-..
T Consensus 85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~ 147 (421)
T KOG0529|consen 85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHA 147 (421)
T ss_pred HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccc
Confidence 3344467788889999999999999999999999997764 467777888888 66655444
No 446
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=24.94 E-value=7.4e+02 Score=25.17 Aligned_cols=99 Identities=19% Similarity=0.096 Sum_probs=63.5
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh--c
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK--I 84 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~--l 84 (518)
...++.|-+.++|+.|.+... +|.++..... .+. ..+...+..+|..|++.++..+|..+..++-- .
T Consensus 107 l~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~-----~d~-----~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 107 LHLASIYEKEQNWRDAAQVLV-GIPLDTGQKA-----YDV-----EQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHhhhHHHHHHHHh-ccCcccchhh-----hhh-----HHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 347888889999999887653 3333221110 011 11223678899999999999999999988843 3
Q ss_pred CCCchHHHH----HHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESSHFKALL----CKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~ka~~----~~g~al~~lg~~~~A~~~~~~al 116 (518)
+..|..... .-|+++-..++|=+|.+.|-+..
T Consensus 176 ~~~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 176 ESSNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444322 34566666778878777776665
No 447
>smart00858 SAF This domain family includes a range of different proteins. Such as antifreeze proteins and flagellar FlgA proteins, and CpaB pilus proteins.
Probab=24.76 E-value=48 Score=24.07 Aligned_cols=16 Identities=56% Similarity=0.698 Sum_probs=14.1
Q ss_pred EEEEcCCCCCCCeEEe
Q 035535 337 IVHASRDVKAGEEITF 352 (518)
Q Consensus 337 ~v~A~rdI~~Geeit~ 352 (518)
+++|.++|++|+.|+-
T Consensus 3 v~va~~~i~~G~~i~~ 18 (64)
T smart00858 3 VVVAARDLPAGEVITA 18 (64)
T ss_pred EEEEeCccCCCCCcch
Confidence 5789999999999985
No 448
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=24.58 E-value=1.4e+02 Score=25.05 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLC 33 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~ 33 (518)
.+..+..+|..++..||.+.|--.|.+.+.+.
T Consensus 37 sa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 37 SANKLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46788999999999999999999999999886
No 449
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.05 E-value=2.5e+02 Score=26.99 Aligned_cols=55 Identities=16% Similarity=0.235 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH-HhccCHHHHHHHHHHHHh
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR-SRLRDFDNALRDCEQALK 83 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~-~~lg~~~~Al~~~~~al~ 83 (518)
-+.|.+.|++|+.+...+..++. +.. |. +..|.+.-| -.+|+.++|++.+++|+.
T Consensus 142 ~~~a~~aY~~A~~~a~~~L~~~~-p~r--------Lg-l~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 142 AEKALEAYEEALEIAKKELPPTH-PLR--------LG-LALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHSCTTS-HHH--------HH-HHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhhhHHHHHhcccCCCC-cHH--------HH-HHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 47899999999998766433111 111 11 455666655 448999999988887743
No 450
>PF10077 DUF2314: Uncharacterized protein conserved in bacteria (DUF2314); InterPro: IPR018756 This domain of unkown function is found in various bacterial hypothetical proteins, as well as putative ankyrin repeat proteins.
Probab=23.84 E-value=58 Score=28.38 Aligned_cols=17 Identities=29% Similarity=0.733 Sum_probs=14.1
Q ss_pred CCHHHHHHhcccCCeEe
Q 035535 359 LPLEKRKEMSKTWGFHC 375 (518)
Q Consensus 359 ~~~~~R~~l~~~~~F~C 375 (518)
.+.++|.+..+.||+.|
T Consensus 117 m~~~e~~~~d~~~G~~~ 133 (133)
T PF10077_consen 117 MSEEERDEHDEAWGLDF 133 (133)
T ss_pred CCHHHHHHHHHHhCCCC
Confidence 67778888888999987
No 451
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=23.70 E-value=1.3e+02 Score=30.86 Aligned_cols=55 Identities=24% Similarity=0.250 Sum_probs=44.1
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHhccChHHHHHHH
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIES--------SHFKALLCKGKILLSLNRYSMALDCF 112 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p--------~~~ka~~~~g~al~~lg~~~~A~~~~ 112 (518)
+...|.-++.+++|++|...+..|..+-. .+..++|..|++++.+++++.++-.+
T Consensus 44 lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~n 106 (400)
T KOG4563|consen 44 LVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGN 106 (400)
T ss_pred HHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 34456667779999999999999987732 35789999999999999988876544
No 452
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=23.11 E-value=1.5e+02 Score=18.26 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHhc----cChHHHHHHHHHHH
Q 035535 90 KALLCKGKILLSL----NRYSMALDCFKETL 116 (518)
Q Consensus 90 ka~~~~g~al~~l----g~~~~A~~~~~~al 116 (518)
.+.+.+|..|..- .++.+|...|+++.
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa 32 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAA 32 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 4567777776532 37778888887775
No 453
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=22.99 E-value=1.6e+02 Score=18.60 Aligned_cols=28 Identities=14% Similarity=0.206 Sum_probs=17.3
Q ss_pred hHHHHHHH--HHHHhcc-----ChHHHHHHHHHHH
Q 035535 89 FKALLCKG--KILLSLN-----RYSMALDCFKETL 116 (518)
Q Consensus 89 ~ka~~~~g--~al~~lg-----~~~~A~~~~~~al 116 (518)
+.+.+.+| .++..-. ++++|+.+|+++.
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa 35 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAA 35 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHH
Confidence 35667777 4333322 4678888888775
No 454
>PRK10316 hypothetical protein; Provisional
Probab=22.82 E-value=3.4e+02 Score=25.57 Aligned_cols=61 Identities=13% Similarity=-0.052 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHH-------HHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQF-------IDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~A-------l~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~ 77 (518)
.-...+|..++.|+..+|++..+-+ +.+.|-... ..-.++|..+++.|+|.+|-..
T Consensus 129 ~Ava~AN~~Lk~Gd~~~A~e~LklAgvdv~~~~al~PL~qT-----------------~~~V~~A~~ll~~gkyyeA~~a 191 (209)
T PRK10316 129 AAIKIANEKMAKGDKKGAMEELRLAGVGVMENQYLMPLKQT-----------------RNAVADAQKLLDKGKYYEANLA 191 (209)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHcCcchhhHhHhcCchhh-----------------HHHHHHHHHHHhCCChhHHHHH
Confidence 3456899999999999999987654 223333221 1455788889999998888777
Q ss_pred HHHHH
Q 035535 78 CEQAL 82 (518)
Q Consensus 78 ~~~al 82 (518)
+.++.
T Consensus 192 Lk~a~ 196 (209)
T PRK10316 192 LKGAE 196 (209)
T ss_pred HHhhc
Confidence 76664
No 455
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=22.73 E-value=8.9e+02 Score=26.60 Aligned_cols=67 Identities=21% Similarity=0.286 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH--h-cccc-CCcHHHHHHHHHHHHHHH
Q 035535 71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL--V-DAQA-SGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al--~-~p~~-~~~~~~l~~~l~~~~~~~ 139 (518)
|.+|+...+.- .+..|.--|..+|-.|++.++|.+|+.++-.|. + .=++ .++.+-..++++.+..+.
T Consensus 302 ~~~AI~sa~~~--Y~n~HvYPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~YnY~reDeEiYKEfleIAneLi 372 (618)
T PF05053_consen 302 FNEAISSARTY--YNNHHVYPYTYLGGYYYRHKRYREALRSWAEAADVIRKYNYSREDEEIYKEFLEIANELI 372 (618)
T ss_dssp HHHHHHHHHHH--CTT--SHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTTSB--GGGHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHH--hcCCccccceehhhHHHHHHHHHHHHHHHHHHHHHHHHcccCccHHHHHHHHHHHHHHHH
Confidence 34444444433 245577788899999999999999999998876 2 1111 223344555555554443
No 456
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=22.50 E-value=2.3e+02 Score=25.95 Aligned_cols=30 Identities=20% Similarity=0.057 Sum_probs=28.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.+.+.+.++..+|+.++|.....++..+-|
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 788999999999999999999999999988
No 457
>PF13041 PPR_2: PPR repeat family
Probab=22.41 E-value=2.6e+02 Score=18.99 Aligned_cols=28 Identities=14% Similarity=0.178 Sum_probs=16.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.|.-+=.++.+.|++++|++.+++..+.
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~~~ 32 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMKKR 32 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHHHc
Confidence 3444555566666666666666665544
No 458
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=21.97 E-value=3.4e+02 Score=20.10 Aligned_cols=59 Identities=15% Similarity=0.043 Sum_probs=37.9
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~ 77 (518)
...|..+|..|+|-+|-+.+...-...+.. . .+.. ..++..--|..+.+.|+...|...
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~---------~~~l--qglIq~A~a~~h~~~gn~~gA~~l 61 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGP-E---------RDFL--QGLIQLAVALYHLRRGNPRGARRL 61 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CC-H---------HHHH--HHHHHHHHHHHHHHCTSHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcc-h---------HHHH--HHHHHHHHHHHHHHhCCHHHHHHh
Confidence 457889999999999999998887644332 1 1111 122444455667778888887653
No 459
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.82 E-value=1.1e+03 Score=26.01 Aligned_cols=114 Identities=13% Similarity=0.121 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHh-----hcccc-hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLC-----QSQIT-ETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNAL 75 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-----p~~~~-~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al 75 (518)
++..+.+.+...-.+|+.+-|.+...++|=.. |.... ......+-...--+...++++..=.-+.+.|-+..|+
T Consensus 283 HvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~ 362 (665)
T KOG2422|consen 283 HVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGCWRTAL 362 (665)
T ss_pred chhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCChHHHH
Confidence 45677788888888899998888888887432 21110 0000000000111233445555555566789999999
Q ss_pred HHHHHHHhcCCC-chHH-HHHHHHHHHhccChHHHHHHHHHH
Q 035535 76 RDCEQALKIESS-HFKA-LLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 76 ~~~~~al~l~p~-~~ka-~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
+.|+-.+++||. ++-+ .+..-.-.+...+|+--++.++..
T Consensus 363 E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 363 EWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999998 6654 333333334556676666666554
No 460
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=21.69 E-value=3e+02 Score=31.06 Aligned_cols=21 Identities=14% Similarity=0.229 Sum_probs=11.8
Q ss_pred HHHHHHhccChHHHHHHHHHH
Q 035535 95 KGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 95 ~g~al~~lg~~~~A~~~~~~a 115 (518)
.+.-|...|+|+-|.+.|.++
T Consensus 771 iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 771 IADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHhccchhHHHHHHHHHhc
Confidence 445555566666666655543
No 461
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=21.67 E-value=2e+02 Score=17.31 Aligned_cols=27 Identities=19% Similarity=0.140 Sum_probs=17.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
.|..+-.++.+.|+++.|...++...+
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~ 29 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKE 29 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455566677777777777777666544
No 462
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=21.47 E-value=4.8e+02 Score=24.28 Aligned_cols=50 Identities=10% Similarity=0.002 Sum_probs=30.5
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHH
Q 035535 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALD 110 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~ 110 (518)
....++++.|+|++|.+.+++..+ ||++.+-...+..+-.....|..-++
T Consensus 116 ~aV~VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lq 165 (200)
T cd00280 116 QAVAVCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQ 165 (200)
T ss_pred HHHHHHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHH
Confidence 344567777777777777777777 77666654444444444444444433
No 463
>PF15297 CKAP2_C: Cytoskeleton-associated protein 2 C-terminus
Probab=21.22 E-value=5.5e+02 Score=26.27 Aligned_cols=72 Identities=11% Similarity=0.122 Sum_probs=50.5
Q ss_pred HHHHHHh--ccC-HHHHHHHHHHHHhcCCC---chHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHH
Q 035535 61 RAEARSR--LRD-FDNALRDCEQALKIESS---HFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEK 134 (518)
Q Consensus 61 ra~a~~~--lg~-~~~Al~~~~~al~l~p~---~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~ 134 (518)
++.|+-- .|- -++.+..+...++.-|+ .+|.|..+|.++...|.+++.+..|++|+..- ..-.++++..+-.
T Consensus 106 lsECl~Li~eGcp~eei~~~L~~li~~IP~A~K~aKYWIC~Arl~~~~~~~e~vi~iyEeAi~ag--AqPieElR~~l~d 183 (353)
T PF15297_consen 106 LSECLNLIEEGCPKEEILATLSDLIKNIPDAKKLAKYWICLARLEPRTGPIEDVIAIYEEAILAG--AQPIEELRHVLVD 183 (353)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHcC--CChHHHHHHHHHH
Confidence 5555433 343 45777777777777775 67899999999999999999999999999442 1223455544433
No 464
>PF02184 HAT: HAT (Half-A-TPR) repeat; InterPro: IPR003107 The HAT (Half A TPR) repeat has a repetitive pattern characterised by three aromatic residues with a conserved spacing. They are structurally and sequentially similar to TPRs (tetratricopeptide repeats), though they lack the highly conserved alanine and glycine residues found in TPRs. The number of HAT repeats found in different proteins varies between 9 and 12. HAT-repeat-containing proteins appear to be components of macromolecular complexes that are required for RNA processing []. The repeats may be involved in protein-protein interactions. The HAT motif has striking structural similarities to HEAT repeats (IPR000357 from INTERPRO), being of a similar length and consisting of two short helices connected by a loop domain, as in HEAT repeats.; GO: 0006396 RNA processing, 0005622 intracellular
Probab=20.99 E-value=1.8e+02 Score=18.69 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=14.2
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHH
Q 035535 70 DFDNALRDCEQALKIESSHFKALLCKG 96 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p~~~ka~~~~g 96 (518)
+++.|-..+++.+...| +++.|.+-|
T Consensus 2 E~dRAR~IyeR~v~~hp-~~k~WikyA 27 (32)
T PF02184_consen 2 EFDRARSIYERFVLVHP-EVKNWIKYA 27 (32)
T ss_pred hHHHHHHHHHHHHHhCC-CchHHHHHH
Confidence 34555666666666654 355555443
No 465
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=20.54 E-value=2e+02 Score=17.09 Aligned_cols=22 Identities=14% Similarity=0.157 Sum_probs=11.0
Q ss_pred HHHHHHhccCHHHHHHHHHHHH
Q 035535 61 RAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 61 ra~a~~~lg~~~~Al~~~~~al 82 (518)
+-.+|.+.|++++|++.+.+..
T Consensus 6 li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 6 LIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 3344555555555555555443
No 466
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=20.54 E-value=1.8e+02 Score=22.68 Aligned_cols=14 Identities=14% Similarity=0.131 Sum_probs=5.9
Q ss_pred ccCHHHHHHHHHHH
Q 035535 68 LRDFDNALRDCEQA 81 (518)
Q Consensus 68 lg~~~~Al~~~~~a 81 (518)
.|+|++|+..|..+
T Consensus 19 ~g~y~eA~~~Y~~a 32 (76)
T cd02681 19 EGRYSEAVFYYKEA 32 (76)
T ss_pred ccCHHHHHHHHHHH
Confidence 34444444444333
Done!