Query 035535
Match_columns 518
No_of_seqs 584 out of 3919
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 05:42:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035535.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035535hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3qwp_A SET and MYND domain-con 100.0 1.3E-31 4.6E-36 280.2 16.9 208 170-384 6-271 (429)
2 3n71_A Histone lysine methyltr 100.0 4.2E-31 1.4E-35 280.4 19.7 210 168-384 6-283 (490)
3 3qww_A SET and MYND domain-con 100.0 1.1E-31 3.7E-36 280.6 14.8 209 169-384 7-271 (433)
4 4gco_A Protein STI-1; structur 99.8 4.8E-19 1.6E-23 153.1 11.9 110 2-129 12-122 (126)
5 2hr2_A Hypothetical protein; a 99.8 4.9E-18 1.7E-22 151.5 14.5 132 2-139 10-153 (159)
6 3rkv_A Putative peptidylprolyl 99.7 5.7E-17 2E-21 145.4 13.6 135 2-139 10-145 (162)
7 3rq4_A Histone-lysine N-methyl 99.7 7.1E-18 2.4E-22 160.6 7.2 67 309-384 169-237 (247)
8 1n3j_A A612L, histone H3 lysin 99.7 3E-17 1E-21 140.3 8.5 53 309-361 58-112 (119)
9 3s8p_A Histone-lysine N-methyl 99.7 1.2E-17 4.1E-22 160.6 5.9 60 315-383 205-265 (273)
10 4gcn_A Protein STI-1; structur 99.7 1.2E-16 4E-21 138.1 11.1 100 2-119 7-114 (127)
11 3upv_A Heat shock protein STI1 99.7 8.4E-16 2.9E-20 131.4 13.5 100 2-119 3-103 (126)
12 3gyz_A Chaperone protein IPGC; 99.6 1.2E-15 4.1E-20 136.2 12.8 101 2-120 35-136 (151)
13 3sz7_A HSC70 cochaperone (SGT) 99.6 6.2E-15 2.1E-19 132.3 15.6 104 2-123 10-114 (164)
14 2xcb_A PCRH, regulatory protei 99.6 1E-14 3.5E-19 127.9 15.1 119 2-138 17-136 (142)
15 2vgx_A Chaperone SYCD; alterna 99.6 9.4E-15 3.2E-19 129.6 14.0 105 2-124 20-125 (148)
16 2w5y_A Histone-lysine N-methyl 99.6 1.2E-14 4E-19 134.1 12.6 60 315-382 124-189 (192)
17 3q49_B STIP1 homology and U bo 99.6 5.1E-14 1.7E-18 121.4 14.7 119 2-138 8-128 (137)
18 3ope_A Probable histone-lysine 99.6 1.6E-14 5.3E-19 137.0 11.7 61 315-383 146-212 (222)
19 3ooi_A Histone-lysine N-methyl 99.6 1.6E-14 5.4E-19 137.7 11.6 58 315-381 165-228 (232)
20 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 5.6E-14 1.9E-18 148.1 16.4 137 2-141 267-404 (457)
21 4ga2_A E3 SUMO-protein ligase 99.5 2.2E-14 7.5E-19 127.4 11.1 104 3-124 31-136 (150)
22 1p5q_A FKBP52, FK506-binding p 99.5 9.4E-14 3.2E-18 140.3 15.6 137 2-141 146-283 (336)
23 2fbn_A 70 kDa peptidylprolyl i 99.5 1E-13 3.4E-18 128.4 14.1 134 2-137 37-171 (198)
24 1ihg_A Cyclophilin 40; ppiase 99.5 1.1E-13 3.7E-18 141.9 15.0 138 2-141 222-360 (370)
25 3f9x_A Histone-lysine N-methyl 99.5 3.1E-14 1.1E-18 129.0 9.3 49 316-364 108-160 (166)
26 1hxi_A PEX5, peroxisome target 99.5 1.1E-13 3.7E-18 118.2 11.6 101 4-122 18-119 (121)
27 3urz_A Uncharacterized protein 99.5 2.3E-13 7.7E-18 127.5 14.5 113 2-132 3-132 (208)
28 1elw_A TPR1-domain of HOP; HOP 99.5 3.8E-13 1.3E-17 111.6 13.4 105 1-123 2-107 (118)
29 4gyw_A UDP-N-acetylglucosamine 99.5 1.5E-13 5.3E-18 152.3 13.8 120 2-139 8-128 (723)
30 3h6l_A Histone-lysine N-methyl 99.5 1.3E-13 4.5E-18 134.3 10.4 58 315-381 190-253 (278)
31 2lni_A Stress-induced-phosphop 99.5 4.5E-13 1.5E-17 114.0 12.5 111 2-130 15-126 (133)
32 4ga2_A E3 SUMO-protein ligase 99.4 1.3E-13 4.6E-18 122.2 7.7 108 9-134 3-111 (150)
33 2pl2_A Hypothetical conserved 99.4 4.5E-13 1.5E-17 126.3 11.7 120 2-139 4-135 (217)
34 2if4_A ATFKBP42; FKBP-like, al 99.4 1.4E-13 4.9E-18 139.1 8.7 129 2-131 178-307 (338)
35 2dba_A Smooth muscle cell asso 99.4 9.5E-13 3.3E-17 114.3 12.1 106 2-122 27-133 (148)
36 2c2l_A CHIP, carboxy terminus 99.4 1.1E-12 3.8E-17 129.0 13.8 104 2-123 3-107 (281)
37 1elr_A TPR2A-domain of HOP; HO 99.4 1E-12 3.5E-17 111.1 11.5 100 2-119 3-110 (131)
38 2xev_A YBGF; tetratricopeptide 99.4 1.4E-12 4.9E-17 111.0 12.3 104 4-122 3-110 (129)
39 2vyi_A SGTA protein; chaperone 99.4 2.8E-12 9.5E-17 108.2 14.0 104 2-123 11-115 (131)
40 1a17_A Serine/threonine protei 99.4 3E-12 1E-16 113.4 14.7 105 2-124 12-117 (166)
41 4gyw_A UDP-N-acetylglucosamine 99.4 7.1E-13 2.4E-17 147.0 12.4 116 2-135 42-158 (723)
42 4i17_A Hypothetical protein; T 99.4 3E-12 1E-16 120.6 14.5 104 3-124 7-112 (228)
43 2pl2_A Hypothetical conserved 99.4 2.3E-12 7.9E-17 121.3 13.4 120 2-140 38-169 (217)
44 2kck_A TPR repeat; tetratricop 99.4 1.5E-12 5.3E-17 106.9 9.9 102 3-122 6-111 (112)
45 3hna_A Histone-lysine N-methyl 99.4 2E-13 6.8E-18 133.8 5.1 60 315-381 216-285 (287)
46 1zu2_A Mitochondrial import re 99.4 9.3E-13 3.2E-17 117.1 8.7 92 13-122 12-125 (158)
47 3vtx_A MAMA; tetratricopeptide 99.4 5E-12 1.7E-16 114.8 13.9 116 1-134 3-119 (184)
48 2h6f_A Protein farnesyltransfe 99.4 1.3E-12 4.4E-17 134.4 10.0 117 2-136 96-214 (382)
49 2h6f_A Protein farnesyltransfe 99.4 1.7E-12 6E-17 133.4 10.8 115 2-134 130-246 (382)
50 2l6j_A TPR repeat-containing p 99.3 9.2E-13 3.1E-17 108.9 6.4 96 2-115 3-104 (111)
51 3urz_A Uncharacterized protein 99.3 1.1E-11 3.7E-16 116.0 14.1 108 9-139 60-203 (208)
52 2e2e_A Formate-dependent nitri 99.3 2E-11 6.7E-16 110.3 15.2 119 2-139 43-165 (177)
53 1na0_A Designed protein CTPR3; 99.3 1.8E-11 6.3E-16 102.1 13.9 104 3-124 9-113 (125)
54 1ml9_A Histone H3 methyltransf 99.3 2E-12 6.9E-17 128.1 9.1 67 315-381 220-298 (302)
55 3k9i_A BH0479 protein; putativ 99.3 2E-12 6.8E-17 109.1 6.8 90 15-122 2-95 (117)
56 3bo5_A Histone-lysine N-methyl 99.3 8.6E-12 2.9E-16 122.5 11.9 68 315-382 205-283 (290)
57 1wao_1 Serine/threonine protei 99.3 2.7E-12 9.1E-17 136.0 7.3 112 2-131 5-117 (477)
58 1mvh_A Cryptic LOCI regulator 99.3 1.1E-11 3.7E-16 122.3 10.8 45 315-359 213-265 (299)
59 2f69_A Histone-lysine N-methyl 99.3 3.8E-12 1.3E-16 122.9 7.3 46 315-360 186-236 (261)
60 3vtx_A MAMA; tetratricopeptide 99.3 4.9E-11 1.7E-15 108.2 14.1 121 2-140 38-159 (184)
61 4i17_A Hypothetical protein; T 99.3 3.2E-11 1.1E-15 113.5 13.3 114 3-134 42-165 (228)
62 3gyz_A Chaperone protein IPGC; 99.3 4.7E-12 1.6E-16 112.7 6.7 108 16-141 15-123 (151)
63 2r3a_A Histone-lysine N-methyl 99.2 2.9E-11 9.8E-16 119.2 11.0 67 315-381 215-296 (300)
64 1hh8_A P67PHOX, NCF-2, neutrop 99.2 8E-11 2.7E-15 109.2 13.3 96 5-121 8-104 (213)
65 1h3i_A Histone H3 lysine 4 spe 99.2 2.3E-11 8E-16 120.3 9.5 44 315-358 240-288 (293)
66 3smt_A Histone-lysine N-methyl 99.2 6E-11 2E-15 125.4 12.8 69 307-380 264-333 (497)
67 3qky_A Outer membrane assembly 99.2 1.1E-10 3.7E-15 112.5 13.4 111 2-127 14-136 (261)
68 2fo7_A Synthetic consensus TPR 99.2 1.8E-10 6.1E-15 97.1 13.1 101 4-122 2-103 (136)
69 1hh8_A P67PHOX, NCF-2, neutrop 99.2 1.2E-10 4.2E-15 107.9 12.7 89 3-109 37-141 (213)
70 4abn_A Tetratricopeptide repea 99.2 9.8E-11 3.4E-15 123.8 13.0 120 4-141 171-311 (474)
71 3uq3_A Heat shock protein STI1 99.2 1.6E-10 5.5E-15 109.4 13.1 98 3-118 139-237 (258)
72 3as5_A MAMA; tetratricopeptide 99.2 3.1E-10 1E-14 101.5 14.1 102 3-122 42-144 (186)
73 2kat_A Uncharacterized protein 99.2 2.1E-10 7E-15 96.0 12.0 100 20-138 2-102 (115)
74 2pzi_A Probable serine/threoni 99.2 5.1E-11 1.7E-15 131.8 10.5 119 3-140 433-552 (681)
75 2vsy_A XCC0866; transferase, g 99.2 1.5E-10 5.3E-15 124.8 13.8 116 2-135 22-138 (568)
76 2yhc_A BAMD, UPF0169 lipoprote 99.2 4.1E-10 1.4E-14 106.3 14.9 109 2-125 3-133 (225)
77 4eqf_A PEX5-related protein; a 99.2 2.4E-10 8.2E-15 115.2 14.1 101 3-121 213-314 (365)
78 2qpw_A PR domain zinc finger p 99.2 6.6E-11 2.2E-15 104.3 8.3 45 316-360 100-147 (149)
79 1xnf_A Lipoprotein NLPI; TPR, 99.2 2.3E-10 7.9E-15 109.8 12.9 103 2-122 42-145 (275)
80 3ieg_A DNAJ homolog subfamily 99.1 3.1E-10 1.1E-14 112.7 13.8 100 2-119 2-102 (359)
81 4gco_A Protein STI-1; structur 99.1 9.8E-11 3.4E-15 100.5 8.7 85 57-141 15-100 (126)
82 3uq3_A Heat shock protein STI1 99.1 4.3E-10 1.5E-14 106.4 13.9 137 3-139 79-224 (258)
83 4eqf_A PEX5-related protein; a 99.1 1.8E-10 6.1E-15 116.1 11.6 105 3-125 65-170 (365)
84 3qou_A Protein YBBN; thioredox 99.1 2.3E-10 8E-15 112.5 12.1 116 2-135 116-268 (287)
85 4abn_A Tetratricopeptide repea 99.1 1.9E-10 6.5E-15 121.6 12.1 115 2-135 101-226 (474)
86 2gw1_A Mitochondrial precursor 99.1 4.3E-10 1.5E-14 118.0 14.8 101 2-121 5-106 (514)
87 1fch_A Peroxisomal targeting s 99.1 3.3E-10 1.1E-14 113.7 13.3 101 3-121 217-318 (368)
88 3u4t_A TPR repeat-containing p 99.1 2.9E-10 9.8E-15 109.2 12.2 118 3-139 3-125 (272)
89 3qxy_A N-lysine methyltransfer 99.1 6.6E-11 2.3E-15 123.8 8.2 64 308-376 215-278 (449)
90 3ieg_A DNAJ homolog subfamily 99.1 7.2E-10 2.5E-14 110.1 15.4 112 5-130 236-348 (359)
91 2vgx_A Chaperone SYCD; alterna 99.1 7.7E-11 2.6E-15 104.1 7.4 102 22-141 6-108 (148)
92 2pzi_A Probable serine/threoni 99.1 5.5E-11 1.9E-15 131.5 7.7 111 2-131 466-577 (681)
93 2r5s_A Uncharacterized protein 99.1 2.7E-10 9.3E-15 103.1 10.5 100 4-121 7-141 (176)
94 3as5_A MAMA; tetratricopeptide 99.1 3.5E-10 1.2E-14 101.1 11.0 112 3-132 8-120 (186)
95 2fo7_A Synthetic consensus TPR 99.1 9.2E-10 3.2E-14 92.6 12.9 99 3-119 35-134 (136)
96 2q7f_A YRRB protein; TPR, prot 99.1 7.9E-10 2.7E-14 103.9 13.7 101 3-121 57-158 (243)
97 2q7f_A YRRB protein; TPR, prot 99.1 6.2E-10 2.1E-14 104.6 12.6 112 3-132 91-203 (243)
98 3qky_A Outer membrane assembly 99.1 1.4E-09 4.8E-14 104.6 15.0 121 3-124 89-231 (261)
99 1na3_A Designed protein CTPR2; 99.1 8E-10 2.7E-14 87.5 11.0 83 3-103 9-91 (91)
100 3cv0_A Peroxisome targeting si 99.1 1.3E-09 4.3E-14 107.1 14.8 100 3-120 172-272 (327)
101 2ho1_A Type 4 fimbrial biogene 99.1 1.2E-09 4.1E-14 103.7 14.0 97 3-117 37-133 (252)
102 1w3b_A UDP-N-acetylglucosamine 99.1 6.4E-10 2.2E-14 113.1 12.9 101 4-122 136-237 (388)
103 1w3b_A UDP-N-acetylglucosamine 99.1 5.5E-10 1.9E-14 113.6 12.4 117 3-137 237-354 (388)
104 2vq2_A PILW, putative fimbrial 99.1 1.7E-09 5.7E-14 100.1 14.4 103 2-122 7-110 (225)
105 2vq2_A PILW, putative fimbrial 99.0 2.3E-09 7.7E-14 99.2 14.0 116 3-136 42-161 (225)
106 3u4t_A TPR repeat-containing p 99.0 1.4E-09 4.7E-14 104.4 12.4 110 4-128 38-148 (272)
107 2ho1_A Type 4 fimbrial biogene 99.0 1.8E-09 6E-14 102.5 12.8 112 3-132 71-185 (252)
108 2y4t_A DNAJ homolog subfamily 99.0 2.4E-09 8.2E-14 110.6 14.8 103 2-122 25-128 (450)
109 4gcn_A Protein STI-1; structur 99.0 2.4E-09 8.2E-14 91.7 12.3 84 55-138 8-92 (127)
110 1qqe_A Vesicular transport pro 99.0 2.1E-09 7.3E-14 105.7 13.5 110 3-124 117-235 (292)
111 3hym_B Cell division cycle pro 99.0 3.3E-09 1.1E-13 104.2 14.8 102 3-122 90-193 (330)
112 2y4t_A DNAJ homolog subfamily 99.0 3.1E-09 1.1E-13 109.8 15.2 110 5-128 259-369 (450)
113 3fp2_A TPR repeat-containing p 99.0 6.5E-10 2.2E-14 117.6 10.3 102 2-122 24-126 (537)
114 2xcb_A PCRH, regulatory protei 99.0 5.1E-10 1.7E-14 97.6 7.8 99 24-140 5-104 (142)
115 3hym_B Cell division cycle pro 99.0 1.7E-09 6E-14 106.2 12.6 117 4-138 57-175 (330)
116 1p5q_A FKBP52, FK506-binding p 99.0 1.2E-09 4E-14 110.1 11.5 96 3-116 196-292 (336)
117 2e2e_A Formate-dependent nitri 99.0 1.8E-10 6.2E-15 103.9 5.0 111 9-137 16-130 (177)
118 1qqe_A Vesicular transport pro 99.0 4.2E-09 1.4E-13 103.6 14.9 109 3-123 77-193 (292)
119 1fch_A Peroxisomal targeting s 99.0 2.1E-09 7.3E-14 107.8 12.8 103 3-123 64-167 (368)
120 2yhc_A BAMD, UPF0169 lipoprote 99.0 4.1E-09 1.4E-13 99.4 13.9 105 3-122 41-181 (225)
121 3mkr_A Coatomer subunit epsilo 99.0 2.5E-09 8.5E-14 105.5 12.6 103 2-124 129-236 (291)
122 3ma5_A Tetratricopeptide repea 99.0 2.6E-09 8.8E-14 87.4 10.2 67 57-123 9-76 (100)
123 1a17_A Serine/threonine protei 99.0 4E-09 1.4E-13 92.9 11.9 96 3-116 47-144 (166)
124 3edt_B KLC 2, kinesin light ch 98.9 4.7E-09 1.6E-13 100.4 12.6 104 3-116 43-154 (283)
125 3cv0_A Peroxisome targeting si 98.9 3.3E-09 1.1E-13 104.0 11.4 104 4-125 22-126 (327)
126 3mkr_A Coatomer subunit epsilo 98.9 8.5E-09 2.9E-13 101.6 14.3 95 11-123 174-270 (291)
127 2kc7_A BFR218_protein; tetratr 98.9 2.4E-09 8.1E-14 86.6 8.6 91 7-122 4-95 (99)
128 2vsy_A XCC0866; transferase, g 98.9 5.4E-09 1.9E-13 112.6 13.5 104 2-123 56-163 (568)
129 1xnf_A Lipoprotein NLPI; TPR, 98.9 4.8E-09 1.6E-13 100.5 11.3 112 13-138 15-127 (275)
130 3ro3_A PINS homolog, G-protein 98.9 3.9E-08 1.3E-12 85.3 15.5 102 3-116 9-116 (164)
131 3fp2_A TPR repeat-containing p 98.9 6.8E-09 2.3E-13 109.7 12.0 128 3-131 243-387 (537)
132 3edt_B KLC 2, kinesin light ch 98.9 1.3E-08 4.3E-13 97.4 11.9 104 3-116 85-196 (283)
133 1kt0_A FKBP51, 51 kDa FK506-bi 98.8 9.5E-09 3.2E-13 108.0 11.3 94 3-114 317-410 (457)
134 4g1t_A Interferon-induced prot 98.8 2.2E-08 7.6E-13 104.2 13.9 118 4-130 52-180 (472)
135 2xpi_A Anaphase-promoting comp 98.8 1.7E-08 5.9E-13 108.3 13.3 115 3-128 475-590 (597)
136 2vyi_A SGTA protein; chaperone 98.8 1.5E-08 5E-13 84.9 10.2 86 3-106 46-131 (131)
137 3upv_A Heat shock protein STI1 98.8 1.2E-08 3.9E-13 86.5 9.5 83 57-139 6-89 (126)
138 3rkv_A Putative peptidylprolyl 98.8 1.3E-08 4.4E-13 90.4 10.0 86 3-106 63-149 (162)
139 2xpi_A Anaphase-promoting comp 98.8 2.4E-08 8.2E-13 107.2 13.9 112 4-133 374-486 (597)
140 1wao_1 Serine/threonine protei 98.8 3.1E-09 1.1E-13 112.4 6.7 94 2-113 39-134 (477)
141 3u3w_A Transcriptional activat 98.8 2.1E-08 7.3E-13 98.3 12.3 103 3-116 155-264 (293)
142 2qfc_A PLCR protein; TPR, HTH, 98.8 2.8E-08 9.7E-13 97.4 13.1 103 3-116 155-264 (293)
143 1hxi_A PEX5, peroxisome target 98.8 2.2E-08 7.5E-13 84.9 10.6 85 57-141 19-104 (121)
144 2fbn_A 70 kDa peptidylprolyl i 98.8 1.6E-08 5.4E-13 93.0 10.0 94 4-115 89-183 (198)
145 2lni_A Stress-induced-phosphop 98.8 2E-08 6.7E-13 84.7 9.8 84 3-104 50-133 (133)
146 3ro2_A PINS homolog, G-protein 98.8 6.6E-08 2.3E-12 94.4 14.8 106 3-122 5-117 (338)
147 2if4_A ATFKBP42; FKBP-like, al 98.8 4.6E-09 1.6E-13 105.9 6.5 101 5-123 232-334 (338)
148 4a1s_A PINS, partner of inscut 98.8 3.7E-08 1.3E-12 100.4 13.3 102 3-118 48-156 (411)
149 3gw4_A Uncharacterized protein 98.8 6.3E-08 2.2E-12 88.3 13.5 103 2-116 25-134 (203)
150 2r5s_A Uncharacterized protein 98.8 4.4E-08 1.5E-12 88.3 12.2 114 2-116 39-171 (176)
151 3ulq_A Response regulator aspa 98.8 5.6E-08 1.9E-12 98.8 14.4 105 3-119 184-295 (383)
152 2hr2_A Hypothetical protein; a 98.8 1.7E-08 5.8E-13 89.7 9.0 86 56-141 12-121 (159)
153 3k9i_A BH0479 protein; putativ 98.8 2.3E-08 7.7E-13 83.9 9.4 74 2-93 26-99 (117)
154 2h21_A Ribulose-1,5 bisphospha 98.8 8.5E-09 2.9E-13 107.8 8.2 67 308-378 182-259 (440)
155 2gw1_A Mitochondrial precursor 98.8 2.6E-08 9E-13 104.3 11.9 100 5-122 306-406 (514)
156 2ifu_A Gamma-SNAP; membrane fu 98.8 4.2E-08 1.4E-12 97.1 12.7 106 4-122 117-228 (307)
157 3sz7_A HSC70 cochaperone (SGT) 98.8 2E-08 6.7E-13 89.4 9.2 80 2-99 44-123 (164)
158 2l6j_A TPR repeat-containing p 98.8 3.4E-08 1.2E-12 80.9 9.8 66 57-122 6-72 (111)
159 1na3_A Designed protein CTPR2; 98.8 3.7E-08 1.3E-12 77.6 9.7 72 57-128 11-83 (91)
160 3q15_A PSP28, response regulat 98.8 7.2E-08 2.5E-12 98.0 14.3 105 3-119 182-292 (378)
161 2ifu_A Gamma-SNAP; membrane fu 98.8 4.5E-08 1.5E-12 96.9 12.4 106 4-122 77-189 (307)
162 2ond_A Cleavage stimulation fa 98.8 4.9E-08 1.7E-12 96.5 12.5 89 10-116 71-161 (308)
163 3sf4_A G-protein-signaling mod 98.7 8.2E-08 2.8E-12 97.1 14.3 106 3-122 9-121 (406)
164 3ulq_A Response regulator aspa 98.7 6.5E-08 2.2E-12 98.3 13.5 105 2-117 142-252 (383)
165 3ro3_A PINS homolog, G-protein 98.7 8.5E-08 2.9E-12 83.1 12.2 101 4-116 50-156 (164)
166 3nf1_A KLC 1, kinesin light ch 98.7 6.1E-08 2.1E-12 94.2 12.4 104 3-116 111-222 (311)
167 1zu2_A Mitochondrial import re 98.7 2.5E-08 8.6E-13 88.5 8.6 70 2-89 35-125 (158)
168 3ma5_A Tetratricopeptide repea 98.7 4.2E-08 1.4E-12 80.0 9.3 69 2-88 6-74 (100)
169 1dce_A Protein (RAB geranylger 98.7 6.7E-08 2.3E-12 104.3 13.5 115 2-134 62-190 (567)
170 3nf1_A KLC 1, kinesin light ch 98.7 6E-08 2E-12 94.2 11.9 104 3-116 69-180 (311)
171 1ihg_A Cyclophilin 40; ppiase 98.7 3.8E-08 1.3E-12 100.5 10.5 91 3-111 273-363 (370)
172 1ouv_A Conserved hypothetical 98.7 1.6E-07 5.4E-12 90.5 13.7 109 2-133 5-121 (273)
173 3bee_A Putative YFRE protein; 98.7 1.1E-07 3.9E-12 76.8 10.2 79 57-136 8-90 (93)
174 2kc7_A BFR218_protein; tetratr 98.7 6.8E-08 2.3E-12 77.8 8.9 67 58-124 3-71 (99)
175 3qou_A Protein YBBN; thioredox 98.7 8.9E-08 3.1E-12 93.9 11.0 115 2-116 150-282 (287)
176 2ond_A Cleavage stimulation fa 98.7 1.1E-07 3.8E-12 93.9 11.8 86 20-122 116-203 (308)
177 3sf4_A G-protein-signaling mod 98.7 2.9E-07 9.8E-12 93.0 15.1 107 3-121 187-300 (406)
178 3ro2_A PINS homolog, G-protein 98.7 2.8E-07 9.6E-12 89.8 14.6 107 3-121 183-296 (338)
179 4a1s_A PINS, partner of inscut 98.7 2.2E-07 7.6E-12 94.6 14.3 107 3-121 223-336 (411)
180 3q49_B STIP1 homology and U bo 98.7 9.7E-08 3.3E-12 81.4 9.7 82 57-138 11-93 (137)
181 1na0_A Designed protein CTPR3; 98.6 1.6E-07 5.4E-12 77.7 10.7 83 3-103 43-125 (125)
182 1elw_A TPR1-domain of HOP; HOP 98.6 1.9E-07 6.4E-12 76.5 10.8 79 3-99 38-116 (118)
183 2kck_A TPR repeat; tetratricop 98.6 3.1E-08 1E-12 80.7 5.7 64 57-120 8-72 (112)
184 3dra_A Protein farnesyltransfe 98.6 2E-07 6.7E-12 92.5 12.6 115 2-134 66-192 (306)
185 1dce_A Protein (RAB geranylger 98.6 1.1E-07 3.9E-12 102.5 11.5 117 2-136 106-240 (567)
186 3n71_A Histone lysine methyltr 98.6 4.2E-07 1.4E-11 96.1 15.5 104 3-116 309-420 (490)
187 2c2l_A CHIP, carboxy terminus 98.6 1.3E-08 4.5E-13 99.6 3.5 103 2-122 37-169 (281)
188 2v5f_A Prolyl 4-hydroxylase su 98.6 2.5E-07 8.4E-12 76.3 10.7 83 3-96 5-87 (104)
189 3dra_A Protein farnesyltransfe 98.6 1.4E-07 4.7E-12 93.6 10.7 116 3-136 103-234 (306)
190 3q15_A PSP28, response regulat 98.6 3.9E-07 1.3E-11 92.5 13.5 104 3-117 141-250 (378)
191 3dss_A Geranylgeranyl transfer 98.6 3.8E-07 1.3E-11 91.2 12.6 112 3-132 108-237 (331)
192 4f3v_A ESX-1 secretion system 98.6 1.5E-07 5.2E-12 91.7 9.4 100 5-120 137-240 (282)
193 3dss_A Geranylgeranyl transfer 98.6 7.9E-07 2.7E-11 88.9 14.8 116 2-135 63-192 (331)
194 2kat_A Uncharacterized protein 98.6 2.1E-07 7E-12 77.4 9.0 70 2-89 18-87 (115)
195 3gw4_A Uncharacterized protein 98.6 6.8E-07 2.3E-11 81.3 13.3 103 3-116 66-174 (203)
196 3qww_A SET and MYND domain-con 98.5 5.5E-07 1.9E-11 93.6 13.7 99 8-116 303-409 (433)
197 3u3w_A Transcriptional activat 98.5 3.8E-07 1.3E-11 89.2 11.9 101 7-119 119-227 (293)
198 3rjv_A Putative SEL1 repeat pr 98.5 4E-07 1.4E-11 84.9 11.1 31 2-32 17-47 (212)
199 4g1t_A Interferon-induced prot 98.5 2.2E-07 7.5E-12 96.6 10.2 99 3-119 247-365 (472)
200 2qfc_A PLCR protein; TPR, HTH, 98.5 1.8E-06 6.1E-11 84.4 15.9 102 3-116 75-182 (293)
201 3ep0_A PR domain zinc finger p 98.5 2.8E-07 9.4E-12 82.6 8.9 43 316-358 102-147 (170)
202 2dba_A Smooth muscle cell asso 98.5 4.9E-07 1.7E-11 77.6 10.1 80 3-100 65-144 (148)
203 3qwp_A SET and MYND domain-con 98.5 1E-06 3.4E-11 91.7 14.2 103 4-116 288-398 (429)
204 1ouv_A Conserved hypothetical 98.5 1E-06 3.4E-11 84.8 13.3 94 2-117 37-142 (273)
205 2xev_A YBGF; tetratricopeptide 98.5 8.1E-07 2.8E-11 74.7 10.9 83 4-101 40-122 (129)
206 3rjv_A Putative SEL1 repeat pr 98.5 5.6E-07 1.9E-11 83.9 9.8 110 2-132 49-172 (212)
207 1elr_A TPR2A-domain of HOP; HO 98.4 8E-07 2.7E-11 74.1 9.7 90 3-104 38-127 (131)
208 1pc2_A Mitochondria fission pr 98.4 9.3E-07 3.2E-11 77.6 9.8 90 16-123 11-106 (152)
209 3q7a_A Farnesyltransferase alp 98.4 7.8E-07 2.7E-11 89.4 10.3 86 19-122 70-159 (349)
210 3q7a_A Farnesyltransferase alp 98.4 4.4E-07 1.5E-11 91.2 8.3 112 5-134 125-254 (349)
211 2ooe_A Cleavage stimulation fa 98.3 2.5E-06 8.7E-11 90.7 11.8 103 3-122 321-425 (530)
212 1hz4_A MALT regulatory protein 98.3 5.1E-06 1.7E-10 83.6 13.4 103 5-119 55-166 (373)
213 4f3v_A ESX-1 secretion system 98.2 2.5E-06 8.7E-11 83.1 8.5 116 5-139 104-225 (282)
214 1hz4_A MALT regulatory protein 98.2 1E-05 3.5E-10 81.4 12.9 102 5-116 95-201 (373)
215 3dal_A PR domain zinc finger p 98.2 3.7E-06 1.3E-10 76.9 7.6 43 315-357 131-176 (196)
216 2ooe_A Cleavage stimulation fa 98.1 7E-06 2.4E-10 87.3 10.3 99 3-119 272-386 (530)
217 1klx_A Cysteine rich protein B 98.1 1.7E-05 5.9E-10 68.5 10.5 86 9-116 31-124 (138)
218 3u64_A Protein TP_0956; tetrat 98.1 3.1E-05 1.1E-09 75.0 12.5 91 18-124 178-277 (301)
219 1pc2_A Mitochondria fission pr 98.0 1.9E-05 6.4E-10 69.3 9.6 73 3-93 32-109 (152)
220 2v5f_A Prolyl 4-hydroxylase su 98.0 2.6E-05 9.1E-10 63.8 9.6 68 57-124 7-82 (104)
221 3ly7_A Transcriptional activat 98.0 4.2E-05 1.4E-09 76.9 12.5 116 5-121 198-343 (372)
222 3bee_A Putative YFRE protein; 98.0 2.2E-05 7.6E-10 63.1 8.2 69 2-88 5-76 (93)
223 2xm6_A Protein corresponding t 97.9 3.9E-05 1.3E-09 80.6 11.8 60 57-118 365-433 (490)
224 3e4b_A ALGK; tetratricopeptide 97.9 5.3E-05 1.8E-09 79.1 11.1 107 4-132 177-293 (452)
225 3db5_A PR domain zinc finger p 97.8 1.3E-05 4.5E-10 70.6 4.9 45 315-359 97-144 (151)
226 2xm6_A Protein corresponding t 97.8 0.00017 5.7E-09 75.7 13.4 94 2-117 38-143 (490)
227 4b4t_Q 26S proteasome regulato 97.7 0.00028 9.5E-09 72.0 14.0 101 4-116 56-162 (434)
228 3e4b_A ALGK; tetratricopeptide 97.7 9.4E-05 3.2E-09 77.2 10.5 102 5-132 215-328 (452)
229 1nzn_A CGI-135 protein, fissio 97.7 0.00026 8.8E-09 59.8 10.9 101 13-132 11-117 (126)
230 1xi4_A Clathrin heavy chain; a 97.7 0.00021 7.1E-09 82.5 13.3 90 3-115 1105-1221(1630)
231 3ffl_A Anaphase-promoting comp 97.7 0.00044 1.5E-08 61.0 12.0 102 5-115 22-148 (167)
232 1xi4_A Clathrin heavy chain; a 97.7 0.00016 5.6E-09 83.3 11.5 95 4-124 1196-1316(1630)
233 1klx_A Cysteine rich protein B 97.6 0.00029 1E-08 60.6 10.1 93 16-133 8-104 (138)
234 4b4t_Q 26S proteasome regulato 97.6 0.00033 1.1E-08 71.5 11.9 105 8-124 100-211 (434)
235 3mv2_B Coatomer subunit epsilo 97.6 0.00035 1.2E-08 68.8 11.5 97 5-119 102-209 (310)
236 1b89_A Protein (clathrin heavy 97.6 7E-05 2.4E-09 77.2 6.0 102 4-139 123-224 (449)
237 3mv2_B Coatomer subunit epsilo 97.2 0.0023 8E-08 62.9 12.4 102 2-120 135-243 (310)
238 2ff4_A Probable regulatory pro 97.2 0.0047 1.6E-07 62.9 14.7 113 4-116 116-232 (388)
239 3ihx_A PR domain zinc finger p 97.2 0.00025 8.4E-09 62.3 4.0 42 316-357 97-141 (152)
240 1b89_A Protein (clathrin heavy 97.1 0.00084 2.9E-08 69.2 8.1 102 3-131 148-250 (449)
241 3ray_A PR domain-containing pr 97.0 0.00042 1.4E-08 64.8 4.3 57 316-381 141-200 (237)
242 1nzn_A CGI-135 protein, fissio 96.9 0.0027 9.2E-08 53.5 7.9 77 4-97 36-116 (126)
243 3o48_A Mitochondria fission 1 96.7 0.014 4.7E-07 49.4 10.5 76 57-133 42-122 (134)
244 3o48_A Mitochondria fission 1 96.6 0.014 4.8E-07 49.4 9.8 43 56-98 79-121 (134)
245 3u64_A Protein TP_0956; tetrat 96.6 0.025 8.6E-07 54.7 12.9 61 70-130 178-247 (301)
246 3ly7_A Transcriptional activat 96.5 0.0049 1.7E-07 61.9 7.5 73 5-96 279-351 (372)
247 1y8m_A FIS1; mitochondria, unk 96.4 0.023 7.9E-07 48.7 10.2 76 57-133 41-121 (144)
248 4h7y_A Dual specificity protei 96.4 0.064 2.2E-06 46.4 12.9 119 3-135 13-138 (161)
249 1y8m_A FIS1; mitochondria, unk 96.2 0.025 8.6E-07 48.5 9.2 40 56-95 78-117 (144)
250 3ffl_A Anaphase-promoting comp 96.0 0.023 7.9E-07 50.0 8.6 94 3-99 63-165 (167)
251 4e6h_A MRNA 3'-END-processing 94.9 0.15 5E-06 55.8 12.0 98 3-118 343-463 (679)
252 4gns_B Protein CSD3, chitin bi 94.8 0.086 2.9E-06 57.9 9.7 59 57-115 339-397 (754)
253 4e6h_A MRNA 3'-END-processing 94.2 0.44 1.5E-05 52.0 13.6 97 5-119 436-535 (679)
254 3txn_A 26S proteasome regulato 93.2 0.74 2.5E-05 46.6 12.3 98 8-117 104-209 (394)
255 2uy1_A Cleavage stimulation fa 92.7 1.9 6.6E-05 44.9 15.2 116 4-121 214-353 (493)
256 3mv2_A Coatomer subunit alpha; 92.1 0.88 3E-05 44.3 10.7 112 5-119 116-238 (325)
257 3mkr_B Coatomer subunit alpha; 92.0 1.2 4.1E-05 43.3 11.5 112 4-118 103-227 (320)
258 1zbp_A Hypothetical protein VP 91.9 0.67 2.3E-05 44.1 9.3 70 63-132 5-75 (273)
259 4b4t_R RPN7, 26S proteasome re 91.8 0.77 2.6E-05 47.0 10.6 102 5-121 133-240 (429)
260 1ya0_A SMG-7 transcript varian 91.7 0.53 1.8E-05 49.2 9.3 79 57-135 154-233 (497)
261 4gns_B Protein CSD3, chitin bi 90.4 0.54 1.9E-05 51.6 8.1 59 5-81 339-397 (754)
262 4g26_A Pentatricopeptide repea 90.3 2.3 7.9E-05 44.4 12.7 92 6-116 108-202 (501)
263 1ya0_A SMG-7 transcript varian 89.9 1.4 5E-05 45.9 10.5 78 6-101 155-232 (497)
264 4b4t_P 26S proteasome regulato 89.6 6 0.0002 40.6 14.9 104 5-120 139-249 (445)
265 1zbp_A Hypothetical protein VP 89.4 2.3 7.9E-05 40.4 10.5 64 10-91 4-67 (273)
266 3kae_A CDC27, possible protein 86.8 5.8 0.0002 34.9 10.5 63 57-119 64-145 (242)
267 4g26_A Pentatricopeptide repea 85.6 5.2 0.00018 41.7 11.8 82 16-116 83-167 (501)
268 3mkq_B Coatomer subunit alpha; 85.4 5.7 0.0002 35.2 10.1 21 96-116 96-116 (177)
269 2uy1_A Cleavage stimulation fa 85.1 3.1 0.00011 43.3 9.7 91 6-115 289-380 (493)
270 2ff4_A Probable regulatory pro 82.1 3.8 0.00013 41.2 8.6 62 4-83 172-233 (388)
271 3mkq_A Coatomer beta'-subunit; 80.6 6.2 0.00021 43.0 10.4 25 57-81 683-707 (814)
272 4fhn_B Nucleoporin NUP120; pro 80.6 4.9 0.00017 46.5 9.9 126 7-135 846-981 (1139)
273 3mkq_A Coatomer beta'-subunit; 77.9 11 0.00038 40.9 11.4 13 63-75 702-714 (814)
274 4a5x_A MITD1, MIT domain-conta 76.8 8.6 0.00029 29.6 7.1 32 3-34 16-47 (86)
275 2w2u_A Hypothetical P60 katani 75.1 7 0.00024 29.9 6.2 33 2-34 18-50 (83)
276 2v6y_A AAA family ATPase, P60 73.6 8.2 0.00028 29.5 6.2 32 3-34 11-42 (83)
277 3lpz_A GET4 (YOR164C homolog); 73.5 56 0.0019 31.9 13.7 104 3-112 35-159 (336)
278 3mkq_B Coatomer subunit alpha; 73.0 6.6 0.00022 34.8 6.3 47 65-116 15-61 (177)
279 1wfd_A Hypothetical protein 15 71.3 13 0.00046 28.9 7.1 32 3-34 15-46 (93)
280 2v6x_A Vacuolar protein sortin 71.1 13 0.00045 28.4 6.9 32 3-34 13-44 (85)
281 4h7y_A Dual specificity protei 70.8 15 0.0005 31.7 7.7 59 14-90 71-129 (161)
282 2cpt_A SKD1 protein, vacuolar 70.3 12 0.00043 30.5 7.0 32 3-34 18-49 (117)
283 3ax2_A Mitochondrial import re 68.5 4.8 0.00016 30.1 3.6 31 7-37 21-51 (73)
284 2odd_A Protein CBFA2T1; MYND z 67.4 2.8 9.7E-05 30.3 2.2 38 187-224 2-51 (64)
285 3db5_A PR domain zinc finger p 63.8 4 0.00014 35.1 2.9 28 169-196 23-51 (151)
286 3spa_A Mtrpol, DNA-directed RN 61.4 62 0.0021 36.7 12.4 93 5-116 129-228 (1134)
287 2wpv_A GET4, UPF0363 protein Y 60.5 1.2E+02 0.004 29.3 12.9 27 87-113 132-158 (312)
288 1om2_A Protein (mitochondrial 60.3 9.3 0.00032 30.0 4.1 30 7-36 24-53 (95)
289 2crb_A Nuclear receptor bindin 59.1 12 0.00041 29.1 4.3 27 90-116 16-42 (97)
290 2vkj_A TM1634; membrane protei 58.8 20 0.00069 27.6 5.5 51 88-138 52-102 (106)
291 4b4t_S RPN3, 26S proteasome re 55.8 32 0.0011 35.8 8.4 67 56-122 232-304 (523)
292 1qsa_A Protein (soluble lytic 52.1 29 0.001 37.0 7.7 51 66-116 296-346 (618)
293 2crb_A Nuclear receptor bindin 50.4 24 0.00082 27.4 4.8 29 5-33 17-45 (97)
294 2dl1_A Spartin; SPG20, MIT, st 49.4 51 0.0018 26.8 6.9 71 5-75 24-98 (116)
295 3kae_A CDC27, possible protein 48.0 1.4E+02 0.0048 26.3 9.8 55 57-116 35-89 (242)
296 1wy6_A Hypothetical protein ST 45.6 67 0.0023 27.2 7.2 36 82-117 118-153 (172)
297 3txn_A 26S proteasome regulato 45.5 2.4E+02 0.0082 28.0 13.8 31 4-34 20-50 (394)
298 2dl1_A Spartin; SPG20, MIT, st 44.2 27 0.00092 28.4 4.5 62 70-139 18-84 (116)
299 2vkj_A TM1634; membrane protei 44.1 78 0.0027 24.3 6.7 33 2-34 52-84 (106)
300 3t5v_B Nuclear mRNA export pro 44.0 81 0.0028 32.2 9.2 102 16-121 139-254 (455)
301 1wvo_A Sialic acid synthase; a 40.7 11 0.00039 28.4 1.7 19 337-355 8-26 (79)
302 2ijq_A Hypothetical protein; s 37.9 1.9E+02 0.0066 24.8 9.8 58 59-116 36-102 (161)
303 1wvo_A Sialic acid synthase; a 36.6 15 0.00051 27.8 1.7 21 178-198 4-24 (79)
304 4b4t_R RPN7, 26S proteasome re 36.5 45 0.0015 33.7 5.9 60 57-116 133-195 (429)
305 2ijq_A Hypothetical protein; s 36.4 1.5E+02 0.0052 25.5 8.4 70 4-83 33-103 (161)
306 2cfu_A SDSA1; SDS-hydrolase, l 35.9 45 0.0016 35.8 6.1 49 3-69 449-497 (658)
307 2v6y_A AAA family ATPase, P60 33.7 1.4E+02 0.0048 22.4 6.9 12 73-84 10-21 (83)
308 4gq2_M Nucleoporin NUP120; bet 31.0 88 0.003 35.2 7.7 96 7-102 844-949 (950)
309 4gq2_M Nucleoporin NUP120; bet 31.0 57 0.002 36.7 6.1 52 61-116 816-867 (950)
310 2cfu_A SDSA1; SDS-hydrolase, l 29.4 72 0.0025 34.2 6.4 50 57-106 451-500 (658)
311 2rpa_A Katanin P60 ATPase-cont 28.4 57 0.002 24.5 3.7 31 5-35 14-44 (78)
312 4b4t_P 26S proteasome regulato 28.2 2.6E+02 0.0089 28.1 10.1 71 3-84 177-247 (445)
313 2o8p_A 14-3-3 domain containin 27.8 3.5E+02 0.012 24.6 9.7 60 14-83 136-196 (227)
314 2cwy_A Hypothetical protein TT 27.7 1.8E+02 0.0062 22.4 6.8 63 7-83 5-67 (94)
315 3dza_A Uncharacterized putativ 27.6 1.1E+02 0.0037 27.2 6.0 69 4-83 109-178 (191)
316 2g9p_A Antimicrobial peptide l 26.8 25 0.00086 19.5 1.1 14 501-514 1-14 (26)
317 3myv_A SUSD superfamily protei 24.8 1.1E+02 0.0039 30.9 6.6 27 57-83 192-218 (454)
318 4fhn_B Nucleoporin NUP120; pro 24.7 58 0.002 37.4 4.8 53 60-116 817-869 (1139)
319 4b4t_S RPN3, 26S proteasome re 23.3 1.2E+02 0.0039 31.6 6.2 66 10-88 238-303 (523)
320 3ihx_A PR domain zinc finger p 23.2 41 0.0014 28.8 2.4 24 170-196 24-47 (152)
321 3kez_A Putative sugar binding 23.2 1.2E+02 0.0042 30.6 6.5 55 19-83 170-224 (461)
322 3re2_A Predicted protein; meni 22.7 3.7E+02 0.013 26.5 9.1 43 74-116 276-323 (472)
323 2w2u_A Hypothetical P60 katani 21.9 1.1E+02 0.0036 23.2 4.3 19 60-78 24-42 (83)
324 3spa_A Mtrpol, DNA-directed RN 21.7 4.7E+02 0.016 29.7 11.0 60 56-116 128-192 (1134)
325 3mv2_A Coatomer subunit alpha; 21.6 1.2E+02 0.0041 29.3 5.5 49 91-139 116-169 (325)
326 3myv_A SUSD superfamily protei 21.4 1.3E+02 0.0046 30.3 6.4 46 71-116 164-217 (454)
327 1oey_A P67-PHOX, neutrophil cy 21.2 84 0.0029 23.9 3.5 37 321-357 1-51 (83)
328 2npm_A 14-3-3 domain containin 20.9 2.1E+02 0.0073 26.6 7.0 53 20-83 173-226 (260)
329 2br9_A 14-3-3E, 14-3-3 protein 20.3 2.1E+02 0.0073 26.1 6.8 54 20-83 147-201 (234)
330 1n3j_A A612L, histone H3 lysin 20.0 35 0.0012 27.6 1.2 38 335-373 15-52 (119)
No 1
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=99.97 E-value=1.3e-31 Score=280.20 Aligned_cols=208 Identities=23% Similarity=0.411 Sum_probs=147.4
Q ss_pred ceEEeecCCCccEEEEeccCCCCcEEEEeccceecccc-----CC------------C------CCCchhHhHHhHHHHH
Q 035535 170 AVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGI-----LS------------G------ENSNENEQLVMWKNFI 226 (518)
Q Consensus 170 ~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~~-----~~------------~------~~~~~~~~~~~~~~~~ 226 (518)
.++...++++|||++||++|++||+|+.|+|++.+... .+ . .||+..||...|+.+.
T Consensus 6 ~i~~~~~~~~GR~l~Atr~i~~Ge~Il~e~P~~~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~Hk 85 (429)
T 3qwp_A 6 KVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHK 85 (429)
T ss_dssp SEEEEECSSSSEEEEESSCBCTTCEEEEECCSEEEECGGGBTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHTHHHHH
T ss_pred ceeecccCCCCCeEEeCCCCCCCCEEEecCCceeeeccccCCCcCcCCCCcCCCCCcCCCCCCcccCChhhhhhhhhhhH
Confidence 56677799999999999999999999999999865321 00 0 1788899999998665
Q ss_pred HHHHHh--hh-hcH-H----HHHHHHHhhcCCCC--CCc-CCc----ccccCCchhhh------------hhc-------
Q 035535 227 DKVMES--IS-KCQ-R----TRHLISILSSGDNE--DEV-EVP----DVSAFRPEAEE------------RRS------- 272 (518)
Q Consensus 227 ~~~~~~--~~-~~~-~----~~~~i~~L~~~~~~--~~~-~~~----~~~~~~~~~~~------------~~~------- 272 (518)
.+|... .. ..| . ..+++..+..+... +.+ .+. +...+.+.... .+.
T Consensus 86 ~eC~~~~~~~~~~~~~~~rl~~rill~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 165 (429)
T 3qwp_A 86 RECKCLKSCKPRYPPDSVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQDASQ 165 (429)
T ss_dssp HHHHHHHHTTTCCCCHHHHHHHHHHHHHHHSCCCGGGSSSCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHTTTTCCSGGG
T ss_pred HhhhhHHhcCccCCChHHHHHHHHHHHHhcCCCCchhhhhhHHHHhhChhhcChhHHHHHHHHHHHHHHHHhhhcCcccc
Confidence 555321 11 111 1 12223333222111 111 110 11111111100 011
Q ss_pred ccccchhhhhhhhccccccchhhhhhhhhCCCCCcceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEe
Q 035535 273 SNEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITF 352 (518)
Q Consensus 273 ~~~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~~~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~ 352 (518)
.....++..+++++.+|+|++.. ......|.||||.+|++||||.|||.+.|+|..++|+|+|||++||||||
T Consensus 166 ~~~~~~~~~~~~~~~~N~f~i~~-------~~~~~~g~~l~~~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~GeEl~i 238 (429)
T 3qwp_A 166 LPPAFDLFEAFAKVICNSFTICN-------AEMQEVGVGLYPSISLLNHSCDPNCSIVFNGPHLLLRAVRDIEVGEELTI 238 (429)
T ss_dssp SCTTCCHHHHHHHHHHHCEEEEC-------TTSCEEEEEECTTGGGCEECSSCSEEEEEETTEEEEEECSCBCTTCEEEE
T ss_pred CCCHHHHHHHHHHHHhcCccccc-------cccccceEEEchhhHhhCcCCCCCeEEEEeCCEEEEEEeeeECCCCEEEE
Confidence 11234688999999999998641 22335689999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535 353 AYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE 384 (518)
Q Consensus 353 sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~ 384 (518)
||++..+++.+||+ |.+.|+|.|.|++|.++.
T Consensus 239 sY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~ 271 (429)
T 3qwp_A 239 CYLDMLMTSEERRKQLRDQYCFECDCFRCQTQD 271 (429)
T ss_dssp CCSCSSCCHHHHHHHHHHHHCCCCCSHHHHHTT
T ss_pred EecCCCCCHHHHHHHHhccCCeEeeCCCCCCCc
Confidence 99999999999997 778999999999999885
No 2
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=99.97 E-value=4.2e-31 Score=280.36 Aligned_cols=210 Identities=21% Similarity=0.356 Sum_probs=147.7
Q ss_pred cCceEEeecCCCccEEEEeccCCCCcEEEEeccceeccc-----c------------CCC------CCCchhHhHHhHHH
Q 035535 168 IGAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERG-----I------------LSG------ENSNENEQLVMWKN 224 (518)
Q Consensus 168 ~~~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~-----~------------~~~------~~~~~~~~~~~~~~ 224 (518)
...+++..++++|||++||++|++||+|+.|+|++++.. . .+. .+|+..|+...|..
T Consensus 6 ~~~v~v~~~~~~GR~lvAtr~i~~Ge~Il~e~P~~~v~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~ 85 (490)
T 3n71_A 6 MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLN 85 (490)
T ss_dssp CTTEEEEECSSSCEEEEESSCBCTTCEEEEECCSEEEECGGGTTTBCTTTCCBCSCCEECTTTSCCEESSHHHHHHHHHH
T ss_pred CCceEEEecCCCCceEEeccCCCCCCEEEecCCceEEecccccCCcCCCCCCCCCCCCCCCCCCCcCcCCHHHhhhhhhH
Confidence 457999999999999999999999999999999974310 0 001 17888999999986
Q ss_pred HHHHHHH--hhhhcHH-----HHHHHHHhhcCCC--C-CCc-CC----cccccCCchhhh------------hh---ccc
Q 035535 225 FIDKVME--SISKCQR-----TRHLISILSSGDN--E-DEV-EV----PDVSAFRPEAEE------------RR---SSN 274 (518)
Q Consensus 225 ~~~~~~~--~~~~~~~-----~~~~i~~L~~~~~--~-~~~-~~----~~~~~~~~~~~~------------~~---~~~ 274 (518)
+..+|.. .....|. ..+++........ . ..+ .+ .+...+.+.... .+ ...
T Consensus 86 Hk~eC~~~~~~~~~p~~~~rl~lRiL~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (490)
T 3n71_A 86 HKNECAAIKKYGKVPNENIRLAARIMWRVEREGTGLTEGCLVSVDDLQNHVEHFGEEEQKELRVDVDTFLQYWPPQSQQF 165 (490)
T ss_dssp HHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTTSSBCTTCSSBGGGSCCCGGGCCHHHHHHHHHHHHHHHHHSCTTSCCC
T ss_pred HHHHhHHHHhcCcCCCHHHHHHHHHHHHhhccCccCcchhhhHHHHHHhhhhhcCchHHHHHHHHHHHHHHHccccccCC
Confidence 6555532 1111221 1222322221111 0 000 00 011112211100 01 112
Q ss_pred ccchhhhhhhhccccccchhhhhhhhhCCCC-CcceeEeecccccccCCCCCCceEEeeCC-------------EEEEEE
Q 035535 275 EKLDMGKILSILDVNSLVEDAISAKVLGKNK-GLYGLGLWALASFINHSCSPNARRVHVGD-------------YIIVHA 340 (518)
Q Consensus 275 ~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~-~~~~~gl~~~~s~~NHsC~PN~~~~~~~~-------------~~~v~A 340 (518)
...++..+++++.+|+|++.. ..+ ...|.||||.+|++||||.|||.+.|+++ .++|+|
T Consensus 166 ~~~~l~~~~~~~~~N~f~i~~-------~~g~~~~g~gl~p~~s~~NHSC~PN~~~~~~~~~~~~~~~~~~~~~~~~v~A 238 (490)
T 3n71_A 166 SMQYISHIFGVINCNGFTLSD-------QRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFHTQMRIELRA 238 (490)
T ss_dssp CHHHHHHHHHHHHTTEEEEEC-------TTSCSEEEEEECTTGGGCEECSSCSEEEEEECCCCSSSCCCGGGSCEEEEEE
T ss_pred CHHHHHHHHHHHhccCccccc-------CCCCccceEEEchhhhhcccCCCCCeeEEecCCccccccccccccceEEEEE
Confidence 334578899999999998641 122 35789999999999999999999999987 999999
Q ss_pred cCCCCCCCeEEeecCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535 341 SRDVKAGEEITFAYFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE 384 (518)
Q Consensus 341 ~rdI~~Geeit~sY~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~ 384 (518)
+|||++||||||||++..+++.+||+ |.+.|+|.|.|++|..+.
T Consensus 239 ~rdI~~GEEltisY~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~ 283 (490)
T 3n71_A 239 LGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGL 283 (490)
T ss_dssp SSCBCTTCBCEECSSCSCSCHHHHHHHHHHHHSSCCCCHHHHHTT
T ss_pred CCCCCCCCEEEEeecCCCCCHHHHHHHHHCCCCeEeeCCCCCCCC
Confidence 99999999999999999999999997 778999999999999886
No 3
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=99.97 E-value=1.1e-31 Score=280.59 Aligned_cols=209 Identities=18% Similarity=0.339 Sum_probs=146.9
Q ss_pred CceEEeecCCCccEEEEeccCCCCcEEEEeccceecccc-----------------CCC------CCCchhHhHHhHHHH
Q 035535 169 GAVQISKSEISGRGLFATKNVEAGTLFLVTKAIATERGI-----------------LSG------ENSNENEQLVMWKNF 225 (518)
Q Consensus 169 ~~~~i~~~~~~Grg~~a~~~i~~GelIl~e~p~~~~~~~-----------------~~~------~~~~~~~~~~~~~~~ 225 (518)
..+++..+|++|||++||++|++||+|+.|+|++.+... .+. .||+..||...|..+
T Consensus 7 ~~ve~~~~~~~GRgl~A~r~i~~Ge~Il~e~P~a~~~~~~~~~~~C~~C~~~~~~~~~C~~C~~~~yCs~~Cq~~~w~~H 86 (433)
T 3qww_A 7 GGLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLH 86 (433)
T ss_dssp TTEEEEECTTSCEEEEESSCBCTTCEEEEEECSEEEECGGGTTTBCTTTCCBCSSCEECTTTSCCEESSHHHHHHHHHHH
T ss_pred CcEEEeecCCCcCeEEECCCCCCCCEEEecCCceEEecccccCCcCCcccccCCCCCCCCCCcceeecChhhhhhhhhHH
Confidence 468899999999999999999999999999999854310 001 178889999999766
Q ss_pred HHHHHHhhh--h--cH-H-H---HHHHHHhhcC-C-CCC-Cc-CC----cccccCCchhhh------------hhc---c
Q 035535 226 IDKVMESIS--K--CQ-R-T---RHLISILSSG-D-NED-EV-EV----PDVSAFRPEAEE------------RRS---S 273 (518)
Q Consensus 226 ~~~~~~~~~--~--~~-~-~---~~~i~~L~~~-~-~~~-~~-~~----~~~~~~~~~~~~------------~~~---~ 273 (518)
..+|..... . .| . . .+++...... . ... .+ .+ .+.+.+.+.... .+. .
T Consensus 87 k~eC~~l~~~~~~~~p~~~~rl~~Ril~~~~~~~~~~~~~~~~~~~~L~sh~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 166 (433)
T 3qww_A 87 KLECSSMVVLGENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNEKKDLIQSDIAALHQFYSKYLEF 166 (433)
T ss_dssp TTTHHHHHHSSTTCCCCHHHHHHHHHHHHHHHCCSCCGGGSSCCGGGCCCCGGGCCHHHHHHHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHHHHHhCccCCCcHHHHHHHHHHHHhhhccccCchhhhhhHHHHHhhhhccChHHHHHHHHHHHHHHHHHhcccCC
Confidence 555432111 0 11 1 1 1222221111 1 000 00 00 111112211100 011 1
Q ss_pred cccchhhhhhhhccccccchhhhhhhhhCCCCCcceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEee
Q 035535 274 NEKLDMGKILSILDVNSLVEDAISAKVLGKNKGLYGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFA 353 (518)
Q Consensus 274 ~~~~d~~~~~~i~~~N~f~~~~~~~~~~g~~~~~~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~s 353 (518)
....++..+++++.+|+|++.. ......|.||||.+|++||||.|||.+.|++..+.|+|+|||++|||||||
T Consensus 167 ~~~~~i~~~~~~~~~N~f~i~~-------~~~~~~g~gl~p~~s~~NHsC~PN~~~~~~~~~~~~~a~r~I~~Geel~i~ 239 (433)
T 3qww_A 167 PDHSSLVVLFAQVNCNGFTIED-------EELSHLGSAIFPDVALMNHSCCPNVIVTYKGTLAEVRAVQEIHPGDEVFTS 239 (433)
T ss_dssp CCHHHHHHHHHHHHHHCEEEEC-------TTCCEEEEEECTTGGGSEECSSCSEEEEEETTEEEEEESSCBCTTCEEEEC
T ss_pred CCHHHHHHHHHHHcCCceeccc-------CCccceeEEecccccccCCCCCCCceEEEcCCEEEEEeccCcCCCCEEEEe
Confidence 1234578889999999998642 223356899999999999999999999999999999999999999999999
Q ss_pred cCCCCCCHHHHHH-hcccCCeEeecCCCCCCC
Q 035535 354 YFDMLLPLEKRKE-MSKTWGFHCKCKRCKFEE 384 (518)
Q Consensus 354 Y~~~~~~~~~R~~-l~~~~~F~C~C~~C~~~~ 384 (518)
|++..+++.+||+ |.+.|||.|.|++|.+++
T Consensus 240 Y~~~~~~~~~R~~~L~~~~~F~C~C~~C~~~~ 271 (433)
T 3qww_A 240 YIDLLYPTEDRNDRLRDSYFFTCECRECTTKD 271 (433)
T ss_dssp CSCTTSCHHHHHHHHHHHHSCCCCSHHHHHCT
T ss_pred ecCCcCCHHHHHHHHhCcCCEEeECCCCCCCC
Confidence 9999999999997 778999999999999886
No 4
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.79 E-value=4.8e-19 Score=153.11 Aligned_cols=110 Identities=24% Similarity=0.450 Sum_probs=102.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.++++|+.+|+.|+|++|+..|++||+++|.++. +|.|+|.++.++|++++|+.++++|
T Consensus 12 ~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~a 73 (126)
T 4gco_A 12 LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAI------------------LYSNRAACLTKLMEFQRALDDCDTC 73 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHhhHHHhhccHHHHHHHHHHH
Confidence 5788999999999999999999999999999999877 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVN 129 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~ 129 (518)
++++|+++++|+++|.++..+|+|++|+++|++++ .+|+++.....+.
T Consensus 74 l~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~ 122 (126)
T 4gco_A 74 IRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVR 122 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHH
Confidence 99999999999999999999999999999999999 8887655444433
No 5
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.77 E-value=4.9e-18 Score=151.47 Aligned_cols=132 Identities=20% Similarity=0.188 Sum_probs=110.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+++.|+.+++.|+|++|+..|++||+++|+++... +.+ .......+|+|+|.++.++|+|++|+.++++|
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~---a~~---~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kA 83 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEE---AFD---HAGFDAFCHAGLAEALAGLRSFDEALHSADKA 83 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTS---CCC---HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchh---hhh---hccchHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 467899999999999999999999999999999954311 000 00112349999999999999999999999999
Q ss_pred Hhc-------CCCchHHH----HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKI-------ESSHFKAL----LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l-------~p~~~ka~----~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
|++ +|++.++| |++|.++..+|+|++|+.+|++++ ..|++......+..+.+..+...
T Consensus 84 L~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~~ 153 (159)
T 2hr2_A 84 LHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDRI 153 (159)
T ss_dssp HHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHHH
T ss_pred HHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH
Confidence 999 99999999 999999999999999999999999 89998877666666665554443
No 6
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.71 E-value=5.7e-17 Score=145.41 Aligned_cols=135 Identities=19% Similarity=0.248 Sum_probs=106.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++++|+.+++.|+|++|+..|++||.+.+.......++..+..........+|+|+|.|++++|+|++|+.++++|
T Consensus 10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a 89 (162)
T 3rkv_A 10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV 89 (162)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 46789999999999999999999999999995543221111111111222233459999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++ ..+...+..+++..
T Consensus 90 l~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~---~~~~~~l~~~~~~~ 145 (162)
T 3rkv_A 90 LKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA---SVVAREMKIVTERR 145 (162)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH---HHHHHHHHHHHHHH
T ss_pred HhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH---HHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 777654 24455555554443
No 7
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}
Probab=99.71 E-value=7.1e-18 Score=160.60 Aligned_cols=67 Identities=34% Similarity=0.670 Sum_probs=58.8
Q ss_pred eeEeecc-cccccCCCCCCceEEee-CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCCC
Q 035535 309 GLGLWAL-ASFINHSCSPNARRVHV-GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFEE 384 (518)
Q Consensus 309 ~~gl~~~-~s~~NHsC~PN~~~~~~-~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~~ 384 (518)
..++|+. ++++||||.|||...+. +.++.|+|+|||++|||||++|++.++. .++|.|.|.+|..+.
T Consensus 169 ~~~l~~~~ar~iNHSC~PN~~~~~~~~~~i~v~A~rdI~~GEElt~~Y~~~~~~---------~~~f~C~C~~C~~~~ 237 (247)
T 3rq4_A 169 SAQLWLGPAAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFG---------EKNEHCECHTCERKG 237 (247)
T ss_dssp EEEEEESGGGGCEECSSCSEEEEEETTTEEEEEESSCBCTTCBCEECCCTTSSS---------GGGTTCCCHHHHHHT
T ss_pred cceeecchhhhcCCCCCCCEEEEEeCCCEEEEEECCcCCCCCEEEEecCchhcC---------CCCCEEECCCCCCCC
Confidence 4688887 78999999999987765 5799999999999999999999998764 468999999998764
No 8
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=99.69 E-value=3e-17 Score=140.33 Aligned_cols=53 Identities=26% Similarity=0.295 Sum_probs=47.2
Q ss_pred eeEeecccccccCCCCCCceEEee--CCEEEEEEcCCCCCCCeEEeecCCCCCCH
Q 035535 309 GLGLWALASFINHSCSPNARRVHV--GDYIIVHASRDVKAGEEITFAYFDMLLPL 361 (518)
Q Consensus 309 ~~gl~~~~s~~NHsC~PN~~~~~~--~~~~~v~A~rdI~~Geeit~sY~~~~~~~ 361 (518)
+..+++.++++||||.|||...++ +.++.++|+|||++|||||++|.+..+..
T Consensus 58 ~~~~~~~~~~~NHsc~pN~~~~~~~~~~~~~~~A~rdI~~GeElt~~Y~~~~~~~ 112 (119)
T 1n3j_A 58 SAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLS 112 (119)
T ss_dssp EEEESSSHHHHHSCSSCCCEEEECSSSSCEEEEECSCBCSSEEECCCCCCCCCCC
T ss_pred cccccCceeeeccCCCCCeeEEEECCCeEEEEEEccccCCCCEEEEecCchhhcC
Confidence 456788999999999999999887 34899999999999999999999987764
No 9
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}
Probab=99.69 E-value=1.2e-17 Score=160.59 Aligned_cols=60 Identities=38% Similarity=0.646 Sum_probs=52.8
Q ss_pred ccccccCCCCCCceEEeeCC-EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCCCC
Q 035535 315 LASFINHSCSPNARRVHVGD-YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCKFE 383 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~~~~-~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~~~ 383 (518)
.++++||||.|||...+++. ++.|+|+|||++|||||++|++..+. .++|.|.|.+|...
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~i~i~A~RdI~~GEELt~~Y~~~~~~---------~~~f~C~C~~c~cr 265 (273)
T 3s8p_A 205 PAAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFG---------ENNEFCECYTCERR 265 (273)
T ss_dssp GGGGCEECSSCSEEEEEEETTEEEEEESSCBCTTCBCEECCCTTTTS---------GGGTTCCCHHHHHH
T ss_pred hHHhhCCCCCCCeEEEEcCCCEEEEEECceeCCCCEEEEecCchhcC---------CCCeEEECCCCcCC
Confidence 46899999999999888875 99999999999999999999988764 35799999999654
No 10
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.68 E-value=1.2e-16 Score=138.05 Aligned_cols=100 Identities=20% Similarity=0.280 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++++|+.+++.|+|++|+..|++||+++|+++. +|.|+|.+|+++|+|++|+.+++++
T Consensus 7 ~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~------------------~~~nlg~~~~~~~~~~~A~~~~~~a 68 (127)
T 4gcn_A 7 AAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNIT------------------FYNNKAAVYFEEKKFAECVQFCEKA 68 (127)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHhHHHHHHHhhhHHHHHHHHHHH
Confidence 4678999999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCc-------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 82 LKIESSH-------FKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 82 l~l~p~~-------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++++|++ .++|+++|.++..+|+|++|+++|++++ ..|
T Consensus 69 l~~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~kal~~~~ 114 (127)
T 4gcn_A 69 VEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR 114 (127)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc
Confidence 9998876 4689999999999999999999999999 444
No 11
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.66 E-value=8.4e-16 Score=131.44 Aligned_cols=100 Identities=25% Similarity=0.488 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|+.+++.|+|++|+..|++++.++|.++. ++.++|.++.++|+|++|+.+++++
T Consensus 3 ~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a 64 (126)
T 3upv_A 3 KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------------------GYSNRAAALAKLMSFPEAIADCNKA 64 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5788999999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++++|+++.+|+.+|.++..+|++++|+.+|++++ ..|
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 103 (126)
T 3upv_A 65 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDA 103 (126)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999 773
No 12
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.64 E-value=1.2e-15 Score=136.17 Aligned_cols=101 Identities=14% Similarity=0.176 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+++.+...|..+++.|+|++|+..|++++.++|+++. +|.++|.++..+|+|++|+..+++|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~------------------~~~~lg~~~~~~g~~~~Ai~~~~~a 96 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVD------------------YIMGLAAIYQIKEQFQQAADLYAVA 96 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHHccHHHHHHHHHHH
Confidence 5678999999999999999999999999999999887 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
++++|+++.+|+++|.+|..+|++++|+.+|++++ ..|+
T Consensus 97 l~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~al~l~~~ 136 (151)
T 3gyz_A 97 FALGKNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSND 136 (151)
T ss_dssp HHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred HhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999 6654
No 13
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=6.2e-15 Score=132.29 Aligned_cols=104 Identities=22% Similarity=0.329 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+..+|+.++..|+|++|+..|++++.++|.++. +|+++|.+++++|+|++|+.+++++
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a 71 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPI------------------YLSNRAAAYSASGQHEKAAEDAELA 71 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4678999999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++++|+++.+|+.+|.+|..+|+|++|+.+|++++ ..|+++.
T Consensus 72 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 114 (164)
T 3sz7_A 72 TVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGS 114 (164)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred HHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchH
Confidence 99999999999999999999999999999999999 8888776
No 14
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.61 E-value=1e-14 Score=127.89 Aligned_cols=119 Identities=11% Similarity=0.104 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|++++..+|.++. +|.++|.++..+|+|++|+..++++
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 78 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDAR------------------YFLGLGACRQSLGLYEQALQSYSYG 78 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567889999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
++++|+++.+++.+|.+|..+|++++|+.+|++++ ..|+++............++.+
T Consensus 79 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l 136 (142)
T 2xcb_A 79 ALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136 (142)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred HhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8887776644444433333333
No 15
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.60 E-value=9.4e-15 Score=129.60 Aligned_cols=105 Identities=12% Similarity=0.091 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|++++.++|.++. +|.++|.++..+|+|++|+..++++
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 81 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSR------------------FFLGLGACRQAMGQYDLAIHSYSYG 81 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567889999999999999999999999999999877 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++++|+++.+++.+|.+|..+|++++|+.+|++++ ..|++|..
T Consensus 82 l~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 82 AVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999999999999999999999 78876655
No 16
>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*
Probab=99.58 E-value=1.2e-14 Score=134.05 Aligned_cols=60 Identities=35% Similarity=0.652 Sum_probs=45.1
Q ss_pred ccccccCCCCCCceEEe--eCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCCC
Q 035535 315 LASFINHSCSPNARRVH--VGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCKF 382 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~--~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~~ 382 (518)
.++++||||.|||...+ .++ ++.|+|+|||++|||||++|....+.. .+.|.|.| +.|+.
T Consensus 124 ~arfiNHSC~PN~~~~~~~~~g~~~i~i~A~rdI~~GEELt~dY~~~~~~~--------~~~~~C~Cgs~~Crg 189 (192)
T 2w5y_A 124 AARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDA--------SNKLPCNCGAKKCRK 189 (192)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCEEEECCCC---------------CCBCCCCCTTCCS
T ss_pred hhHhhccCCCCCEEEEEEEECCcEEEEEEECcccCCCCEEEEEcCCchhcC--------CCCceeECCCCCCcC
Confidence 46889999999998653 233 899999999999999999999876532 37899999 57763
No 17
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.56 E-value=5.1e-14 Score=121.39 Aligned_cols=119 Identities=20% Similarity=0.308 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|++++..+|.++. ++.++|.++..+|+|++|+..++++
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a 69 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV------------------YYTNRALCYLKMQQPEQALADCRRA 69 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4678999999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC-cHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG-SLETVNGFLEKSKKL 138 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~-~~~~l~~~l~~~~~~ 138 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|++.. ....+...+..++..
T Consensus 70 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~ 128 (137)
T 3q49_B 70 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128 (137)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 7776321 124455555555443
No 18
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=136.95 Aligned_cols=61 Identities=36% Similarity=0.554 Sum_probs=47.8
Q ss_pred ccccccCCCCCCceEEe--eCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecC--CCCCC
Q 035535 315 LASFINHSCSPNARRVH--VGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCK--RCKFE 383 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~--~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~--~C~~~ 383 (518)
.+.++||||.||+.... +++ ++.|+|+|||++|||||++|....+.. ...|.|.|. .|+.-
T Consensus 146 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~~--------~~~~~C~CGs~~Crg~ 212 (222)
T 3ope_A 146 EARFINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNV--------EKQQLCKCGFEKCRGI 212 (222)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECTTSSBCCC--------SCCCBCCCCCTTCCSB
T ss_pred cceeeccCCCCCeEeEEEEECCeEEEEEEECCccCCCCEEEEECCCcccCC--------cCCCEeeCCCcCCCCc
Confidence 36789999999998664 333 899999999999999999999876542 245777774 68754
No 19
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}
Probab=99.55 E-value=1.6e-14 Score=137.67 Aligned_cols=58 Identities=38% Similarity=0.636 Sum_probs=46.8
Q ss_pred ccccccCCCCCCceEEe--eC--CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535 315 LASFINHSCSPNARRVH--VG--DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK 381 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~--~~--~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~ 381 (518)
.+.++||||.||+.... ++ .++.|+|+|||++|||||++|....+. .+.|.|.| +.|+
T Consensus 165 ~aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~RdI~~GEELT~dY~~~~~~---------~~~~~C~CGs~~Cr 228 (232)
T 3ooi_A 165 YARFMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG---------NGKTVCKCGAPNCS 228 (232)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTCSTT---------CTTCBCCCCCTTCC
T ss_pred ccccccccCCCCeEEEEEEECCceEEEEEECCccCCCCEEEEECCCCcCC---------CCCcEeECCCCcCc
Confidence 46789999999998753 33 389999999999999999999886543 35688988 4565
No 20
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.55 E-value=5.6e-14 Score=148.10 Aligned_cols=137 Identities=20% Similarity=0.274 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++++|+.+++.|+|++|+..|++|+.++|.+... ..+...........+|+|+|.|++++|+|++|+.+|++|
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~---~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 343 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGL---SEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKA 343 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSC---CHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccC---ChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35688999999999999999999999999999987421 112222334445669999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..++...++.++.
T Consensus 344 l~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 344 LGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8898888877777777777665543
No 21
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.54 E-value=2.2e-14 Score=127.37 Aligned_cols=104 Identities=8% Similarity=-0.013 Sum_probs=86.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..+++.|+|++|+..|+++|+++|+++. +|.++|.++.++|++++|+..+++++
T Consensus 31 ~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~~~~~~A~~~~~~al 92 (150)
T 4ga2_A 31 SIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPK------------------AHRFLGLLYELEENTDKAVECYRRSV 92 (150)
T ss_dssp HTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCchHHHHHHHHHHH
Confidence 344567888888889999999999999988888876 88888999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHH-HHHHH-hccccCCc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDC-FKETL-VDAQASGS 124 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~-~~~al-~~p~~~~~ 124 (518)
+++|+++.+|+.+|.+|..+|++++|.+. +++++ .+|+++..
T Consensus 93 ~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~ 136 (150)
T 4ga2_A 93 ELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAV 136 (150)
T ss_dssp HHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHH
T ss_pred HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHH
Confidence 99998888888999888888888877766 47888 77766543
No 22
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=9.4e-14 Score=140.34 Aligned_cols=137 Identities=15% Similarity=0.257 Sum_probs=114.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+..+|+.+++.|+|++|+..|++|+.+.|.+.... .+...........+|.|+|.+++++|+|++|+.++++|
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~---~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 222 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFS---NEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKA 222 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCC---SHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCC---hHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 467889999999999999999999999999999874211 11222333444569999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..++...++..+.
T Consensus 223 l~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 223 LELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8887776666677766666655543
No 23
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=1e-13 Score=128.37 Aligned_cols=134 Identities=16% Similarity=0.167 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|+.++..|+|++|+..|.+++.+.|.++........ .........++.|+|.+++++|+|++|+.+++++
T Consensus 37 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~--~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 114 (198)
T 2fbn_A 37 SAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILL--DKKKNIEISCNLNLATCYNKNKDYPKAIDHASKV 114 (198)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHH--HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHH--HHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 46778999999999999999999999999998886521111000 0111223348999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~ 137 (518)
++++|+++++++++|.++..+|+|++|+..|++++ ..|+++.....+..+....++
T Consensus 115 l~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~ 171 (198)
T 2fbn_A 115 LKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKE 171 (198)
T ss_dssp HHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred HHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 777665554555554444433
No 24
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.52 E-value=1.1e-13 Score=141.94 Aligned_cols=138 Identities=18% Similarity=0.309 Sum_probs=110.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++.+|+.+++.|+|++|+..|++|+++.+..+. ....++..++......+|.|+|.+++++|+|++|+.++++|
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~--~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~a 299 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRA--AAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEA 299 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH--HSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCcc--ccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 3567899999999999999999999999997665421 00111111222233459999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..+....++.++.
T Consensus 300 l~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a 360 (370)
T 1ihg_A 300 LEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK 360 (370)
T ss_dssp HTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 8887666556666666555554433
No 25
>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*
Probab=99.51 E-value=3.1e-14 Score=129.00 Aligned_cols=49 Identities=35% Similarity=0.439 Sum_probs=39.7
Q ss_pred cccccCCCCCCceEE--eeCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHH
Q 035535 316 ASFINHSCSPNARRV--HVGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKR 364 (518)
Q Consensus 316 ~s~~NHsC~PN~~~~--~~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R 364 (518)
+.++||||.|||... ++++ ++.++|+|||++|||||++|.+.......+
T Consensus 108 aRfiNHSC~PN~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~ 160 (166)
T 3f9x_A 108 GRLINHSKCGNCQTKLHDIDGVPHLILIASRDIAAGEELLFDYGDRSKASIEA 160 (166)
T ss_dssp GGGCEECTTCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCCCCCHHHHHH
T ss_pred hheeecCCCCCeeEEEEEECCeeEEEEEECCcCCCCCEEEEEcCCChhhHhhh
Confidence 578999999998765 3343 799999999999999999999876544333
No 26
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.50 E-value=1.1e-13 Score=118.24 Aligned_cols=101 Identities=9% Similarity=0.013 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+..+|..+++.|++++|+..|.+++..+|+++. +|+++|.++..+|++++|+..+++|++
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al~ 79 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREE------------------AWRSLGLTQAENEKDGLAIIALNHARM 79 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35778999999999999999999999999999877 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 80 l~P~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 80 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC------
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCC
Confidence 999999999999999999999999999999999 777543
No 27
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.50 E-value=2.3e-13 Score=127.46 Aligned_cols=113 Identities=14% Similarity=0.154 Sum_probs=103.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHH----------------HHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSN----------------RAEAR 65 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~n----------------ra~a~ 65 (518)
.++.+..+|..++..|+|++|+..|++++..+|+++. ++++ +|.++
T Consensus 3 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~~~~~~~~~~~~~~~~~lg~~~ 64 (208)
T 3urz_A 3 SVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE------------------MYYWTNVDKNSEISSKLATELALAY 64 (208)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH------------------HHHHHHSCTTSHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH------------------HHHHhhhcchhhhhHHHHHHHHHHH
Confidence 4678899999999999999999999999999998866 5666 99999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 66 SRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 66 ~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
.++|++++|+..++++++++|+++.+++.+|.++..+|++++|+.+|++++ .+|+++.....+...+
T Consensus 65 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 65 KKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999 8888776665555554
No 28
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.48 E-value=3.8e-13 Score=111.56 Aligned_cols=105 Identities=24% Similarity=0.309 Sum_probs=98.1
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
+.+..+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~ 63 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHV------------------LYSNRSAAYAKKGDYQKAYEDGCK 63 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHhhccHHHHHHHHHH
Confidence 35788999999999999999999999999999998766 899999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.
T Consensus 64 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 107 (118)
T 1elw_A 64 TVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQ 107 (118)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred HHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999999999999 6665543
No 29
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.48 E-value=1.5e-13 Score=152.31 Aligned_cols=120 Identities=17% Similarity=0.249 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+++.+.++|+.+.++|+|++|+..|++||+++|+++. +|+|+|.++.++|++++|+..+++|
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~------------------a~~nLg~~l~~~g~~~eA~~~~~~A 69 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAA------------------AHSNLASVLQQQGKLQEALMHYKEA 69 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5778888999999999999999999999999888766 7777777777777777777777777
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
++++|+++.+|+++|.+|..+|++++|+++|++++ +.|+++.....+..++...++.+
T Consensus 70 l~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~ 128 (723)
T 4gyw_A 70 IRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIP 128 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHH
Confidence 77777777777777777777777777777777777 67766655555555555554443
No 30
>3h6l_A Histone-lysine N-methyltransferase SETD2; SET domain-containing protein 2, S-adenos methionine, structural genomics, structural genomics consor SGC; HET: SAM; 1.99A {Homo sapiens} PDB: 4fmu_A* 4h12_A*
Probab=99.46 E-value=1.3e-13 Score=134.27 Aligned_cols=58 Identities=29% Similarity=0.541 Sum_probs=45.5
Q ss_pred ccccccCCCCCCceEE--eeCC--EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecC--CCC
Q 035535 315 LASFINHSCSPNARRV--HVGD--YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCK--RCK 381 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~--~~~~--~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~--~C~ 381 (518)
.+.++||||.|||... ++++ +|.|+|+|||++|||||++|....+. ...|.|.|. .|+
T Consensus 190 ~aRFiNHSC~PN~~~~~~~v~g~~ri~~fA~RdI~~GEELT~dY~~~~~~---------~~~~~C~CGs~~Cr 253 (278)
T 3h6l_A 190 CSRFMNHSCEPNCETQKWTVNGQLRVGFFTTKLVPSGSELTFDYQFQRYG---------KEAQKCFCGSANCR 253 (278)
T ss_dssp GGGGCEECSSCSEEEEEEEETTEEEEEEEESSCBCTTCBCEECCTTTEEC---------SSCEECCCCCTTCC
T ss_pred hhhhcccCCCCCceeEEEEeCCceEEEEEECCccCCCCEEEEecCCCcCC---------CCCcEeECCCCCCe
Confidence 3678999999998654 3444 78999999999999999999875432 356999994 554
No 31
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.46 E-value=4.5e-13 Score=113.99 Aligned_cols=111 Identities=23% Similarity=0.452 Sum_probs=100.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
....+...|..++..|+|++|+..|.+++...|.+.. ++.++|.++..+|++++|+..++++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a 76 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAK------------------LYSNRAACYTKLLEFQLALKDCEEC 76 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHH------------------HHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4678999999999999999999999999999988765 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|.++.....+..
T Consensus 77 ~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~ 126 (133)
T 2lni_A 77 IQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQR 126 (133)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 99999999999999999999999999999999999 77766544433333
No 32
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.44 E-value=1.3e-13 Score=122.23 Aligned_cols=108 Identities=9% Similarity=0.058 Sum_probs=95.0
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
.|..+..+|++++|+..|.+++...|..+. +++++|.+|+++|+|++|++.++++++++|++
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~------------------~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~ 64 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPSPRQKSI------------------KGFYFAKLYYEAKEYDLAKKYICTYINVQERD 64 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCSHHHHHT------------------THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hHHHHHHcChHHHHHHHHHHhcccCcccHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 588888999999999999999999888776 89999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 89 FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 89 ~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
+.+|+.+|.+|..+|++++|+.+|++++ ..|+++.....+..++.+
T Consensus 65 ~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~ 111 (150)
T 4ga2_A 65 PKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCK 111 (150)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 888777665555555543
No 33
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.44 E-value=4.5e-13 Score=126.28 Aligned_cols=120 Identities=11% Similarity=0.067 Sum_probs=106.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+...|..++..|++++|+..|++++..+|+++. ++.++|.++.++|++++|+..++++
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a 65 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPE------------------ALYWLARTQLKLGLVNPALENGKTL 65 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999877 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhc-----------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSL-----------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~l-----------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
++++|+++.+++.+|.++..+ |++++|+..|++++ ..|+++.....+..++...++.+
T Consensus 66 l~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~ 135 (217)
T 2pl2_A 66 VARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERD 135 (217)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChH
Confidence 999999999999999999999 99999999999999 88877666566666655554444
No 34
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.43 E-value=1.4e-13 Score=139.13 Aligned_cols=129 Identities=18% Similarity=0.191 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..++.+|+.+++.|+|++|+..|++|+.+.|.+..... ..+...........+|+|+|.+++++|+|++|+.+|+++
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~-~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~a 256 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQL-YGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIV 256 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTC-CHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhh-cccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999987642000 000001111222348999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
++++|+++++|+++|.+|..+|+|++|+.+|++++ ..|+++.....+..+
T Consensus 257 l~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l 307 (338)
T 2if4_A 257 LTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRAL 307 (338)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999 888776655554444
No 35
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.42 E-value=9.5e-13 Score=114.30 Aligned_cols=106 Identities=23% Similarity=0.355 Sum_probs=96.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|++++...|++.. ...++.++|.++..+|+|++|+..++++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 91 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---------------QAVLHRNRAACHLKLEDYDKAETEASKA 91 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---------------HHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 4678899999999999999999999999999887521 1128999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 92 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~ 133 (148)
T 2dba_A 92 IEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNK 133 (148)
T ss_dssp HHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSSCH
T ss_pred HhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH
Confidence 99999999999999999999999999999999999 776544
No 36
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.42 E-value=1.1e-12 Score=128.95 Aligned_cols=104 Identities=20% Similarity=0.341 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+..+|+.++..|+|++|+..|++++..+|+++. +++|+|.++.++|+|++|+.++++|
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a 64 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAV------------------YYTNRALCYLKMQQPEQALADCRRA 64 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4678999999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++++|+++++++++|.+|..+|+|++|+..|++++ ..|+++.
T Consensus 65 l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~ 107 (281)
T 2c2l_A 65 LELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRL 107 (281)
T ss_dssp TTSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchh
Confidence 99999999999999999999999999999999999 8887653
No 37
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.42 E-value=1e-12 Score=111.10 Aligned_cols=100 Identities=15% Similarity=0.293 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..++++
T Consensus 3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~ 64 (131)
T 1elr_A 3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMT------------------YITNQAAVYFEKGDYNKCRELCEKA 64 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHhccHHHHHHHHHHH
Confidence 4678899999999999999999999999999988765 8999999999999999999999999
Q ss_pred HhcCCCc-------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 82 LKIESSH-------FKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 82 l~l~p~~-------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++++|.+ +.+++.+|.++..+|++++|+..|++++ ..|
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 110 (131)
T 1elr_A 65 IEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHR 110 (131)
T ss_dssp HHHHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HhhccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 9999877 9999999999999999999999999999 554
No 38
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.42 E-value=1.4e-12 Score=110.95 Aligned_cols=104 Identities=15% Similarity=0.145 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+...|..++..|+|++|+..|.+++...|+++. . ..+++++|.+++++|+|++|+..++++++
T Consensus 3 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~-----------~~~~~~lg~~~~~~~~~~~A~~~~~~~~~ 67 (129)
T 2xev_A 3 RTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY----T-----------PNALYWLGESYYATRNFQLAEAQFRDLVS 67 (129)
T ss_dssp CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc----c-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 45778999999999999999999999999998762 0 11899999999999999999999999999
Q ss_pred cCCCc---hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSH---FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.+|++ +.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 68 ~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~ 110 (129)
T 2xev_A 68 RYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSD 110 (129)
T ss_dssp HCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSH
T ss_pred HCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCh
Confidence 99999 8899999999999999999999999999 666543
No 39
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.41 E-value=2.8e-12 Score=108.20 Aligned_cols=104 Identities=29% Similarity=0.435 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..++++
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~ 72 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAV------------------YFCNRAAAYSKLGNYAGAVQDCERA 72 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhhchHHHHHHHHHH
Confidence 4567889999999999999999999999999988765 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~ 115 (131)
T 2vyi_A 73 ICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNET 115 (131)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH
T ss_pred HhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchH
Confidence 99999999999999999999999999999999999 7765543
No 40
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.41 E-value=3e-12 Score=113.37 Aligned_cols=105 Identities=19% Similarity=0.362 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++...|.+.. ++.++|.++..+|+|++|+..++++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a 73 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSLAYLRTECYGYALGDATRA 73 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999998766 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++++|.++.+++.+|.++..+|++++|+..|++++ ..|.++..
T Consensus 74 ~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~ 117 (166)
T 1a17_A 74 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDA 117 (166)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999999999999999999999999999 77765443
No 41
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.41 E-value=7.1e-13 Score=147.02 Aligned_cols=116 Identities=16% Similarity=0.186 Sum_probs=106.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+.++|+.+.+.|++++|+..|++||+++|+++. +|+|+|.++..+|++++|++.+++|
T Consensus 42 ~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~------------------a~~nLg~~l~~~g~~~~A~~~~~kA 103 (723)
T 4gyw_A 42 FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFAD------------------AYSNMGNTLKEMQDVQGALQCYTRA 103 (723)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999999877 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
++++|+++.+|+++|.+|..+|++++|+++|++++ +.|+++.....+...+...
T Consensus 104 l~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~ 158 (723)
T 4gyw_A 104 IQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV 158 (723)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence 99999999999999999999999999999999999 8888776655555555443
No 42
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.40 E-value=3e-12 Score=120.61 Aligned_cols=104 Identities=12% Similarity=0.190 Sum_probs=97.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh-cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ-SQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p-~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++.+...|..++..|+|++|+..|++++.+.| .+.. +++++|.++..+|+|++|+..++++
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~a 68 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSV------------------TAYNCGVCADNIKKYKEAADYFDIA 68 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcH------------------HHHHHHHHHHHhhcHHHHHHHHHHH
Confidence 57899999999999999999999999999998 5544 8889999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus 69 l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 112 (228)
T 4i17_A 69 IKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATI 112 (228)
T ss_dssp HHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHH
T ss_pred HHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHH
Confidence 99999999999999999999999999999999999 78766643
No 43
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.39 E-value=2.3e-12 Score=121.34 Aligned_cols=120 Identities=13% Similarity=0.060 Sum_probs=106.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----------cC
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-----------RD 70 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-----------g~ 70 (518)
++..+...|..++..|++++|+..|+++++++|+++. ++.++|.++..+ |+
T Consensus 38 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~lg~~~~~~~~~~~~~~~~~g~ 99 (217)
T 2pl2_A 38 DPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLG------------------GYMVLSEAYVALYRQAEDRERGKGY 99 (217)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHTCSSHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHhhhhhhhhcccccC
Confidence 4677889999999999999999999999999999877 999999999999 99
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 71 FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ .. +++.....+...+...++.++
T Consensus 100 ~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~ 169 (217)
T 2pl2_A 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDE 169 (217)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999999999999999999999999 65 555555556666555555443
No 44
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=1.5e-12 Score=106.94 Aligned_cols=102 Identities=10% Similarity=0.061 Sum_probs=94.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++...|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a~ 67 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESK------------------YWLMKGKALYNLERYEEAVDCYNYVI 67 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 455678999999999999999999999999998765 89999999999999999999999999
Q ss_pred hcCCC--chHHHHHHHHHHHhc-cChHHHHHHHHHHH-hccccC
Q 035535 83 KIESS--HFKALLCKGKILLSL-NRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~--~~ka~~~~g~al~~l-g~~~~A~~~~~~al-~~p~~~ 122 (518)
+++|. +..+++.+|.++..+ |++++|+++|++++ ..|+++
T Consensus 68 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 68 NVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 99999 999999999999999 99999999999999 666543
No 45
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*
Probab=99.38 E-value=2e-13 Score=133.83 Aligned_cols=60 Identities=33% Similarity=0.705 Sum_probs=45.0
Q ss_pred ccccccCCCCCCceEE--ee-C-----CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeec--CCCC
Q 035535 315 LASFINHSCSPNARRV--HV-G-----DYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKC--KRCK 381 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~--~~-~-----~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C--~~C~ 381 (518)
.+.++||||.||+... +. + .+|.|+|+|||++|||||++|.+.++.. ...+|.|.| +.|+
T Consensus 216 ~aRFiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~RdI~~GEELT~dYg~~~~~~-------~~~~~~C~CGs~~CR 285 (287)
T 3hna_A 216 VSRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI-------KGKLFSCRCGSPKCR 285 (287)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTCCEEEEEESSCBCTTCBCEECCCHHHHHH-------HTTTCCCCCCCTTCS
T ss_pred chheeeecCCCCceeEEEEEecCCCCceeEEEEEcceeCCCCeEEEeCCCccccc-------CCCcCEeeCCCCCCC
Confidence 3578899999999753 22 1 2899999999999999999998643221 234788888 6665
No 46
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.37 E-value=9.3e-13 Score=117.09 Aligned_cols=92 Identities=16% Similarity=0.213 Sum_probs=84.7
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCH----------HHHHHHHHHHH
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDF----------DNALRDCEQAL 82 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~----------~~Al~~~~~al 82 (518)
.-+.+.|++|+..|.++++++|+++. +|.|+|.++..++++ ++|+..+++||
T Consensus 12 ~~r~~~feeA~~~~~~Ai~l~P~~ae------------------a~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL 73 (158)
T 1zu2_A 12 FDRILLFEQIRQDAENTYKSNPLDAD------------------NLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEAL 73 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHH
Confidence 34668899999999999999999987 999999999999876 59999999999
Q ss_pred hcCCCchHHHHHHHHHHHhcc-----------ChHHHHHHHHHHH-hccccC
Q 035535 83 KIESSHFKALLCKGKILLSLN-----------RYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg-----------~~~~A~~~~~~al-~~p~~~ 122 (518)
+++|++..+|+++|.+|..+| +|++|+++|++|+ ++|+++
T Consensus 74 ~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 74 LIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 999999999999999999885 8999999999999 887654
No 47
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.37 E-value=5e-12 Score=114.79 Aligned_cols=116 Identities=7% Similarity=0.158 Sum_probs=87.9
Q ss_pred CHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 1 ELMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 1 ~~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
+.+..+.+.|+.++.+|+|++|+..|+++|+++|+++. ++.++|.++.++|++++|+..+.+
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~~~~~~a~~~~~~ 64 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVE------------------TLLKLGKTYMDIGLPNDAIESLKK 64 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35677889999999999999999999999999999876 777777777777777777777777
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
++..+|+++.++..+|.++...++++.|...+.+++ ..|.++.....+...+..
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~ 119 (184)
T 3vtx_A 65 FVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS 119 (184)
T ss_dssp HHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 777777777777777777777777777777777777 555544443444444433
No 48
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=1.3e-12 Score=134.38 Aligned_cols=117 Identities=12% Similarity=0.107 Sum_probs=99.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQ 80 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~ 80 (518)
.+..+...|..+...|++++|+..|+++|.++|++.. +|+++|.++..+|+ +++|+.++++
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~------------------a~~~~g~~l~~~g~d~~eAl~~~~~ 157 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYT------------------VWHFRRVLLKSLQKDLHEEMNYITA 157 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHH------------------HHHHHHHHHHHcccCHHHHHHHHHH
Confidence 3567888899999999999999999999999998876 89999999999996 9999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
|++++|+++.+|+.+|.++..+|++++|+.+|++++ .+|++...+..+..++...+
T Consensus 158 al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g 214 (382)
T 2h6f_A 158 IIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFK 214 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999 78777666655555555444
No 49
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.36 E-value=1.7e-12 Score=133.42 Aligned_cols=115 Identities=12% Similarity=0.108 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREE-WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~-~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
+...|..+|..+...|+ |++|+..|+++|.++|++.. +|+++|.++..+|++++|+..+++
T Consensus 130 ~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~------------------a~~~~g~~~~~~g~~~eAl~~~~k 191 (382)
T 2h6f_A 130 NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQ------------------VWHHRRVLVEWLRDPSQELEFIAD 191 (382)
T ss_dssp CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCCTTHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHH
Confidence 46789999999999997 99999999999999999877 999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 81 ALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
|++++|+++.+|+.+|.++..+|++++|+.+|++++ .+|+++..+..+..++..
T Consensus 192 al~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~ 246 (382)
T 2h6f_A 192 ILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN 246 (382)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 888777666666665554
No 50
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.34 E-value=9.2e-13 Score=108.87 Aligned_cols=96 Identities=19% Similarity=0.261 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+...|..++..|+|++|+..|++++.+.|.++. ++.|+|.++.++|+|++|+.+++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 64 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPV------------------GYSNKAMALIKLGEYTQAIQMCQQG 64 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5788999999999999999999999999999998876 8999999999999999999999999
Q ss_pred HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
++++|++ ..+++++|.++..+|++++|+..|++.
T Consensus 65 l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 104 (111)
T 2l6j_A 65 LRYTSTAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVDEL 104 (111)
T ss_dssp HTSCSSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSSSC
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHHHh
Confidence 9999999 999999999999999999988776543
No 51
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.34 E-value=1.1e-11 Score=115.96 Aligned_cols=108 Identities=18% Similarity=0.251 Sum_probs=91.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
.|..++..|+|++|+..|+++++++|+++. ++.++|.++..+|++++|+..++++++++|++
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~ 121 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKAPNNVD------------------CLEACAEMQVCRGQEKDALRMYEKILQLEADN 121 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999877 99999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhc-----------------------------------cChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 89 FKALLCKGKILLSL-----------------------------------NRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 89 ~ka~~~~g~al~~l-----------------------------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+.+|+.+|.+|+.. |+|++|+.+|++++ ..|+. .....+
T Consensus 122 ~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~-----~~~~~l 196 (208)
T 3urz_A 122 LAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST-----EAQKTL 196 (208)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH-----HHHHHH
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH-----HHHHHH
Confidence 99988888776543 46788888888888 66532 233444
Q ss_pred HHHHHHH
Q 035535 133 EKSKKLE 139 (518)
Q Consensus 133 ~~~~~~~ 139 (518)
.++++++
T Consensus 197 ~~i~~~~ 203 (208)
T 3urz_A 197 DKILRIE 203 (208)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5444444
No 52
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.33 E-value=2e-11 Score=110.34 Aligned_cols=119 Identities=13% Similarity=0.183 Sum_probs=104.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-HHhccCH--HHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-RSRLRDF--DNALRDC 78 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-~~~lg~~--~~Al~~~ 78 (518)
.+..+...|..++..|+|++|+..|.+++.++|.++. ++.++|.+ +...|++ ++|+..+
T Consensus 43 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~l~~~~~~~~~~~A~~~~ 104 (177)
T 2e2e_A 43 NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAE------------------LYAALATVLYYQASQHMTAQTRAMI 104 (177)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHH------------------HHHHHHHHHHHHTTTCCCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH------------------HHHHHHHHHHHhcCCcchHHHHHHH
Confidence 3567889999999999999999999999999998866 89999999 8899999 9999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 79 EQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.. ..+...+.+.+++.
T Consensus 105 ~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~-~~~~~~i~~~~~~~ 165 (177)
T 2e2e_A 105 DKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR-TQLVESINMAKLLQ 165 (177)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH-HHHHHHHHHHHHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH-HHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999 77876543 44444555444443
No 53
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.33 E-value=1.8e-11 Score=102.15 Aligned_cols=104 Identities=16% Similarity=0.325 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++...|.+.. ++.++|.++...|++++|+..+++++
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 70 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 567889999999999999999999999999887755 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
+++|.++.+++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus 71 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~ 113 (125)
T 1na0_A 71 ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEA 113 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHH
Confidence 9999999999999999999999999999999999 77655443
No 54
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Probab=99.33 E-value=2e-12 Score=128.06 Aligned_cols=67 Identities=34% Similarity=0.633 Sum_probs=36.4
Q ss_pred ccccccCCCCCCceEEe-eC-------CEEEEEEcCCCCCCCeEEeecCCCCCCHHHHH-H-hcccCCeEeec--CCCC
Q 035535 315 LASFINHSCSPNARRVH-VG-------DYIIVHASRDVKAGEEITFAYFDMLLPLEKRK-E-MSKTWGFHCKC--KRCK 381 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~-~~-------~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~-~-l~~~~~F~C~C--~~C~ 381 (518)
.+.++||||.||+.... .+ .++.|+|+|||++|||||++|.+..+...... . .+....|.|.| +.|+
T Consensus 220 ~arfiNHSC~PN~~~~~~~~~~~~~~~~~i~~~A~rdI~~GeELt~dY~~~~~~~~~~~~~~~k~~~~~~C~CGs~~Cr 298 (302)
T 1ml9_A 220 PTRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHDPSKISEMTKCLCGTAKCR 298 (302)
T ss_dssp GGGGCEECSSCSEEEEEEESSGGGGGGCEEEEEESSCBCTTCEEEECTTC-----------------------------
T ss_pred HHHhcccCCCCCeeEEEEEeccCCCCceEEEEEECCCcCCCCEEEEEECCCccccccccccccccCCCcEeeCCCCcCc
Confidence 46789999999998653 23 27999999999999999999998765432211 1 11234688888 5665
No 55
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.31 E-value=2e-12 Score=109.13 Aligned_cols=90 Identities=12% Similarity=0.123 Sum_probs=79.7
Q ss_pred hhhcHHHHHHHHHHHHHH---hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHH
Q 035535 15 LREEWKESVQVYTQFIDL---CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKA 91 (518)
Q Consensus 15 ~~g~~~~Ai~~y~~Al~~---~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka 91 (518)
..|+|++|+..|++++.+ +|.++. ++.++|.++..+|+|++|+..++++++++|+++.+
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 63 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLAE------------------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQAL 63 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHH
Confidence 468999999999999999 576655 99999999999999999999999999999999999
Q ss_pred HHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 92 LLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 92 ~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 64 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~ 95 (117)
T 3k9i_A 64 RVFYAMVLYNLGRYEQGVELLLKIIAETSDDE 95 (117)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 9999999999999999999999999 766554
No 56
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}
Probab=99.31 E-value=8.6e-12 Score=122.50 Aligned_cols=68 Identities=29% Similarity=0.570 Sum_probs=49.2
Q ss_pred ccccccCCCCCCceEEe---eC--CEEEEEEcCCCCCCCeEEeecCCCCCCHHHH--HH-hc-ccCCeEeec--CCCCC
Q 035535 315 LASFINHSCSPNARRVH---VG--DYIIVHASRDVKAGEEITFAYFDMLLPLEKR--KE-MS-KTWGFHCKC--KRCKF 382 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~---~~--~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R--~~-l~-~~~~F~C~C--~~C~~ 382 (518)
.+.++||||.||+.... ++ .++.|+|+|||++|||||++|.+.++..... ++ +. ....|.|.| +.|+.
T Consensus 205 ~arfiNHSC~PN~~~~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~~~~~~~~~~~~C~CGs~~CrG 283 (290)
T 3bo5_A 205 IGRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERLDHGKLRKPCYCGAKSCTA 283 (290)
T ss_dssp GGGGCEECSSCSEEEEEEESSSSSCEEEEEESSCBCTTCEEEECTTSCTTCCSSSEEEEEEECSSCCCBCCCCCTTCCS
T ss_pred chheeeecCCCCEEEEEEEeCCCceEEEEEEccccCCCCEEEEECCCccccccccccccccccCCCCccccCCCcCCCc
Confidence 46799999999998753 33 4899999999999999999999876542110 01 11 134688998 57764
No 57
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.28 E-value=2.7e-12 Score=136.03 Aligned_cols=112 Identities=18% Similarity=0.322 Sum_probs=101.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|+.+++.|+|++|+..|++|++++|+++. ++.++|.++.++|+|++|++++++|
T Consensus 5 ~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 66 (477)
T 1wao_1 5 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAI------------------YYGNRSLAYLRTECYGYALGDATRA 66 (477)
T ss_dssp HHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 3556677889999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
++++|+++.+++++|.+|..+|+|++|++.|++++ ..|+++.....+...
T Consensus 67 l~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~ 117 (477)
T 1wao_1 67 IELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQEC 117 (477)
T ss_dssp HHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHH
T ss_pred HHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 99999999999999999999999999999999999 888777655554443
No 58
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A
Probab=99.28 E-value=1.1e-11 Score=122.34 Aligned_cols=45 Identities=33% Similarity=0.462 Sum_probs=38.0
Q ss_pred ccccccCCCCCCceEE--eeC------CEEEEEEcCCCCCCCeEEeecCCCCC
Q 035535 315 LASFINHSCSPNARRV--HVG------DYIIVHASRDVKAGEEITFAYFDMLL 359 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~--~~~------~~~~v~A~rdI~~Geeit~sY~~~~~ 359 (518)
.+.++||||.||+... +.+ .++.++|+|||++|||||++|.+..+
T Consensus 213 ~aRfiNHSC~PN~~~~~v~~~~~~~~~~~i~~~A~rdI~~GEELt~dY~~~~~ 265 (299)
T 1mvh_A 213 VSRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKD 265 (299)
T ss_dssp GGGGCEECSSCSEEEEEEESCTTCTTSCEEEEEESSCBCTTCBCEECCCTTSS
T ss_pred hhheEeecCCCCeEEEEEEeecCCCCceEEEEEEccCcCCCCEEEEEcCCccc
Confidence 4678999999999864 222 38999999999999999999998765
No 59
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Probab=99.28 E-value=3.8e-12 Score=122.90 Aligned_cols=46 Identities=37% Similarity=0.370 Sum_probs=38.0
Q ss_pred ccccccCCCCCCceEEe-e----CCEEEEEEcCCCCCCCeEEeecCCCCCC
Q 035535 315 LASFINHSCSPNARRVH-V----GDYIIVHASRDVKAGEEITFAYFDMLLP 360 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~-~----~~~~~v~A~rdI~~Geeit~sY~~~~~~ 360 (518)
.++++||||.|||...+ . +..+.|+|+|||++|||||++|.....+
T Consensus 186 ~aRfiNHSC~PN~~~~~~~~~~~~~~i~i~A~RdI~~GEELt~dYg~~~~~ 236 (261)
T 2f69_A 186 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSP 236 (261)
T ss_dssp CGGGCEECSSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEECCCCCSCC
T ss_pred ceeeEeeCCCCCeEEEEEEcCCCCcEEEEEECcccCCCCEEEEEcCCcccc
Confidence 35789999999998775 2 2245999999999999999999976653
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.27 E-value=4.9e-11 Score=108.15 Aligned_cols=121 Identities=11% Similarity=0.103 Sum_probs=96.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+...|..++..|++++|+..+.+++...|.... ++.++|.++...++++.|+..+.++
T Consensus 38 ~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~a~~~~~~a 99 (184)
T 3vtx_A 38 NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAE------------------AYYILGSANFMIDEKQAAIDALQRA 99 (184)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567888999999999999999999999999888765 7778888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
++++|.+..+++.+|.++..+|+|++|++.|++++ ..|.++.....+...+...++.++
T Consensus 100 ~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 100 IALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 88888888888888888888888888888888888 677666555556666555554443
No 61
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.27 E-value=3.2e-11 Score=113.52 Aligned_cols=114 Identities=11% Similarity=0.090 Sum_probs=100.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|+|++|+..|.+++..+|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~al 103 (228)
T 4i17_A 42 SVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLAN------------------AYIGKSAAYRDMKNNQEYIATLTEGI 103 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 345677999999999999999999999999998776 99999999999999999999999999
Q ss_pred hcCCCch-------HHHHHHHHHHHhccChHHHHHHHHHHH-hccc--cCCcHHHHHHHHHH
Q 035535 83 KIESSHF-------KALLCKGKILLSLNRYSMALDCFKETL-VDAQ--ASGSLETVNGFLEK 134 (518)
Q Consensus 83 ~l~p~~~-------ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~--~~~~~~~l~~~l~~ 134 (518)
+++|+++ .+|+.+|.++..+|++++|+..|++++ ..|+ ++.....+......
T Consensus 104 ~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~ 165 (228)
T 4i17_A 104 KAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYN 165 (228)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHH
T ss_pred HHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHH
Confidence 9999998 779999999999999999999999999 7776 55554445444433
No 62
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.26 E-value=4.7e-12 Score=112.71 Aligned_cols=108 Identities=6% Similarity=-0.075 Sum_probs=95.2
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
.+++-.+-..|.+++.++|+++. +++++|.+++++|+|++|+..++++++++|+++.+|+.+
T Consensus 15 l~~~~~~~~~l~~al~l~p~~~~------------------~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~l 76 (151)
T 3gyz_A 15 VIDAINSGATLKDINAIPDDMMD------------------DIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGL 76 (151)
T ss_dssp HHHHHHTSCCTGGGCCSCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHCCCCHHHHhCCCHHHHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence 34444555667888888888876 999999999999999999999999999999999999999
Q ss_pred HHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 96 GKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 96 g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
|.+|..+|+|++|+.+|++++ .+|+++.....+...+...++.++.
T Consensus 77 g~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~lg~~~eA 123 (151)
T 3gyz_A 77 AAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLRLKAPLKA 123 (151)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999 8999888888888888777766544
No 63
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Probab=99.23 E-value=2.9e-11 Score=119.17 Aligned_cols=67 Identities=31% Similarity=0.548 Sum_probs=46.1
Q ss_pred ccccccCCCCCCceEE--eeC------CEEEEEEcCCCCCCCeEEeecCCCCCCHHHH-----HHhcccCCeEeec--CC
Q 035535 315 LASFINHSCSPNARRV--HVG------DYIIVHASRDVKAGEEITFAYFDMLLPLEKR-----KEMSKTWGFHCKC--KR 379 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~--~~~------~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R-----~~l~~~~~F~C~C--~~ 379 (518)
.++++||||.||+... +.+ .++.++|+|||++|||||++|........+. ..-.+...|.|.| +.
T Consensus 215 ~aRfiNHSC~PN~~~~~v~~~~~d~~~~~i~~~A~rdI~~GEELt~dY~~~~~~~~~~~~~d~~~~~~~~~~~C~CGs~~ 294 (300)
T 2r3a_A 215 VSHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSIDHSPAKKRVRTVCKCGAVT 294 (300)
T ss_dssp GGGGCEECSSCSEEEEEEESSCCCTTSCEEEEEESSCBCTTCEEEECGGGSSCC--------------CCCCBCCCCCTT
T ss_pred hHHheecCCCCCEEEEEEEeccCCCCceEEEEEEccCCCCCCEEEEECCCCccccccccccccccccccCCCEeeCCCcc
Confidence 4689999999999864 221 3899999999999999999998764221110 0011234688888 56
Q ss_pred CC
Q 035535 380 CK 381 (518)
Q Consensus 380 C~ 381 (518)
|+
T Consensus 295 Cr 296 (300)
T 2r3a_A 295 CR 296 (300)
T ss_dssp CC
T ss_pred cc
Confidence 65
No 64
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.23 E-value=8e-11 Score=109.18 Aligned_cols=96 Identities=14% Similarity=0.216 Sum_probs=59.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|+|++|+..|++++ .| ++. ++.++|.++..+|++++|+..+++++++
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~ 66 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSR------------------ICFNIGCMYTILKNMTEAEKAFTRSINR 66 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 44556666666666666666666664 11 111 5666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+|+++.+++.+|.++..+|+|++|+..|++++ ..|.+
T Consensus 67 ~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~ 104 (213)
T 1hh8_A 67 DKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGN 104 (213)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTC
T ss_pred CccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc
Confidence 66666666666666666666666666666666 44443
No 65
>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A
Probab=99.21 E-value=2.3e-11 Score=120.30 Aligned_cols=44 Identities=32% Similarity=0.248 Sum_probs=36.7
Q ss_pred ccccccCCCCCCceEEee-C---CE-EEEEEcCCCCCCCeEEeecCCCC
Q 035535 315 LASFINHSCSPNARRVHV-G---DY-IIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 315 ~~s~~NHsC~PN~~~~~~-~---~~-~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
.++++||||.|||...+. . .+ +.|+|+|||++|||||++|....
T Consensus 240 ~ar~iNHsc~pN~~~~~~~~~~~~~~~~~~a~r~I~~geElt~~Yg~~~ 288 (293)
T 1h3i_A 240 LGHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDH 288 (293)
T ss_dssp CGGGSEEESSCSEEEEEEEETTTEEEEEEEESSCBCTTCEEEEEEETTB
T ss_pred ceeeeccCCCCCeEEEEEEcCCCCcEEEEEECCccCCCCEEEEecCCCC
Confidence 367899999999998763 2 23 58999999999999999998654
No 66
>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}
Probab=99.21 E-value=6e-11 Score=125.39 Aligned_cols=69 Identities=23% Similarity=0.159 Sum_probs=56.1
Q ss_pred cceeEeecccccccCCCCCCc-eEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCC
Q 035535 307 LYGLGLWALASFINHSCSPNA-RRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRC 380 (518)
Q Consensus 307 ~~~~gl~~~~s~~NHsC~PN~-~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C 380 (518)
....+|+|.+.++||||.||. .+.+.++.+.++|.++|++||||+|||++. + -.+|+..|||.|....+
T Consensus 264 ~~~~~LvP~~Dm~NH~~~~~~~~~~~~~~~~~~~a~~~i~~Geei~isYG~~--~---n~~Ll~~YGFv~~~Np~ 333 (497)
T 3smt_A 264 RVTLALIPLWDMCNHTNGLITTGYNLEDDRCECVALQDFRAGEQIYIFYGTR--S---NAEFVIHSGFFFDNNSH 333 (497)
T ss_dssp SEEEEECTTGGGCEECSCSEEEEEETTTTEEEEEESSCBCTTCEEEECCCSC--C---HHHHHHHHSCCCTTCTT
T ss_pred cccceeechHHhhcCCCcccceeeeccCCeEEEEeCCccCCCCEEEEeCCCC--C---hHHHHHHCCCCCCCCCC
Confidence 346799999999999999964 444456799999999999999999999984 2 13577899999876444
No 67
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.20 E-value=1.1e-10 Score=112.51 Aligned_cols=111 Identities=11% Similarity=0.039 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|..+++.|+|++|+..|++++...|.++. ...+++++|.+++++|+|++|+..++++
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~---------------~~~a~~~lg~~~~~~~~~~~A~~~~~~~ 78 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEW---------------AADAQFYLARAYYQNKEYLLAASEYERF 78 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTT---------------HHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcc---------------hHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 4678899999999999999999999999999988732 0118999999999999999999999999
Q ss_pred HhcCCC---chHHHHHHHHHHHh--------ccChHHHHHHHHHHH-hccccCCcHHH
Q 035535 82 LKIESS---HFKALLCKGKILLS--------LNRYSMALDCFKETL-VDAQASGSLET 127 (518)
Q Consensus 82 l~l~p~---~~ka~~~~g~al~~--------lg~~~~A~~~~~~al-~~p~~~~~~~~ 127 (518)
++++|+ .+.+++.+|.++.. +|++++|+..|++++ ..|+++.....
T Consensus 79 l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 136 (261)
T 3qky_A 79 IQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA 136 (261)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred HHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH
Confidence 999885 46799999999999 999999999999999 78877655433
No 68
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.20 E-value=1.8e-10 Score=97.06 Aligned_cols=101 Identities=17% Similarity=0.329 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+...|..++..|++++|+..|.+++...|.+.. ++.++|.++...|++++|+..++++++
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~~ 63 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------AWYNLGNAYYKQGDYDEAIEYYQKALE 63 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchh------------------HHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 46788999999999999999999999999887655 889999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.+|.+..+++.+|.++...|++++|+..|++++ ..|.++
T Consensus 64 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~ 103 (136)
T 2fo7_A 64 LDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA 103 (136)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh
Confidence 999999999999999999999999999999999 666543
No 69
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.19 E-value=1.2e-10 Score=107.91 Aligned_cols=89 Identities=13% Similarity=0.084 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.++|.++. +++++|.++..+|+|++|+..+++++
T Consensus 37 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al 98 (213)
T 1hh8_A 37 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAV------------------AYFQRGMLYYQTEKYDLAIKDLKEAL 98 (213)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchH------------------HHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 457889999999999999999999999999998766 99999999999999999999999999
Q ss_pred hcCCCch----------------HHHHHHHHHHHhccChHHHH
Q 035535 83 KIESSHF----------------KALLCKGKILLSLNRYSMAL 109 (518)
Q Consensus 83 ~l~p~~~----------------ka~~~~g~al~~lg~~~~A~ 109 (518)
++.|.+. .+++.+|.++..+|++++|+
T Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 141 (213)
T 1hh8_A 99 IQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAE 141 (213)
T ss_dssp HTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHH
Confidence 9888766 99999999999999999886
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.18 E-value=9.8e-11 Score=123.78 Aligned_cols=120 Identities=18% Similarity=0.094 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHhh---------hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc------
Q 035535 4 QQLRSKATELLLR---------EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL------ 68 (518)
Q Consensus 4 ~~l~~~Gn~~~~~---------g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l------ 68 (518)
..+...|..++.. |+|++|+..|++|++++|+++. +|+++|.++..+
T Consensus 171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~~ 232 (474)
T 4abn_A 171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGR------------------SWYILGNAYLSLYFNTGQ 232 (474)
T ss_dssp HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHHHHhhcc
Confidence 5678899999999 9999999999999999999876 999999999999
Q ss_pred --cCHHHHHHHHHHHHhcCC---CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 69 --RDFDNALRDCEQALKIES---SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 69 --g~~~~Al~~~~~al~l~p---~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
|++++|+..+++|++++| +++.+|+.+|.+|..+|+|++|++.|++++ ..|+++.....+..++...++.++.
T Consensus 233 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eA 311 (474)
T 4abn_A 233 NPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSL 311 (474)
T ss_dssp CHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999 8888777667777777777766544
No 71
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.18 E-value=1.6e-10 Score=109.44 Aligned_cols=98 Identities=24% Similarity=0.497 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|++++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~al 200 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDAR------------------GYSNRAAALAKLMSFPEAIADCNKAI 200 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456778888999999999999999999998888765 88899999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD 118 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~ 118 (518)
+++|+++.+++.+|.++..+|++++|+..|++++ ..
T Consensus 201 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 201 EKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999998 55
No 72
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.18 E-value=3.1e-10 Score=101.49 Aligned_cols=102 Identities=12% Similarity=0.147 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++...|++++|+..+++++
T Consensus 42 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 103 (186)
T 3as5_A 42 VDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVK------------------VATVLGLTYVQVQKYDLAVPLLIKVA 103 (186)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 344566667777777777777777777776665544 67777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+.+|.++.+++.+|.++..+|++++|+..|++++ ..|.++
T Consensus 104 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~ 144 (186)
T 3as5_A 104 EANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEG 144 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred hcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccch
Confidence 7777777777777777777777777777777777 555443
No 73
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.17 E-value=2.1e-10 Score=95.99 Aligned_cols=100 Identities=14% Similarity=0.126 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535 20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL 99 (518)
Q Consensus 20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al 99 (518)
++|+..|.+++..+|+++. +++++|.++..+|++++|+..++++++++|+++.+|+.+|.++
T Consensus 2 ~~a~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 63 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNML------------------LRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63 (115)
T ss_dssp CCHHHHHHHHHTTTCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHH
Confidence 3589999999999998876 9999999999999999999999999999999999999999999
Q ss_pred HhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 100 LSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 100 ~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
..+|++++|+..|++++ ..|.+... .....+...++++
T Consensus 64 ~~~g~~~~A~~~~~~al~~~~~~~~~-~~~~~l~~~l~~l 102 (115)
T 2kat_A 64 QGQGDRAGARQAWESGLAAAQSRGDQ-QVVKELQVFLRRL 102 (115)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHHTCH-HHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhccccccH-HHHHHHHHHHHHh
Confidence 99999999999999999 67654432 3333333333333
No 74
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.17 E-value=5.1e-11 Score=131.77 Aligned_cols=119 Identities=8% Similarity=-0.015 Sum_probs=107.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.+..+|..++..|+|++|+..|+++++.+|++.. +|+++|.+++.+|+|++|+.++++|+
T Consensus 433 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al 494 (681)
T 2pzi_A 433 VELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWR------------------LVWYRAVAELLTGDYDSATKHFTEVL 494 (681)
T ss_dssp SHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467889999999999999999999999999999877 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+++|+++.+|+.+|.++..+|+|++ ++.|++++ .+|+++.....+...+...++.++
T Consensus 495 ~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~ 552 (681)
T 2pzi_A 495 DTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVG 552 (681)
T ss_dssp HHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999999999999999 99999999 888777666666666665555543
No 75
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.16 E-value=1.5e-10 Score=124.77 Aligned_cols=116 Identities=11% Similarity=-0.017 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|+++++++|++.. ++.++|.++..+|++++|++.++++
T Consensus 22 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 83 (568)
T 2vsy_A 22 DFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPE------------------AVARLGRVRWTQQRHAEAAVLLQQA 83 (568)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
++++|+++.+++.+|.+|..+|++++|++.|++++ ..|+++.....+...+...
T Consensus 84 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 138 (568)
T 2vsy_A 84 SDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL 138 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999 7777665555555555544
No 76
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.16 E-value=4.1e-10 Score=106.28 Aligned_cols=109 Identities=9% Similarity=0.088 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|..++..|+|++|+..|++++...|.++. . ..+++++|.+++++|+|++|+..++++
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~----~-----------~~a~~~lg~~~~~~~~~~~A~~~~~~~ 67 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPY----S-----------QQVQLDLIYAYYKNADLPLAQAAIDRF 67 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH----H-----------HHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 3577899999999999999999999999999887643 0 118999999999999999999999999
Q ss_pred HhcCCCchH---HHHHHHHHHHh------------------ccChHHHHHHHHHHH-hccccCCcH
Q 035535 82 LKIESSHFK---ALLCKGKILLS------------------LNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 82 l~l~p~~~k---a~~~~g~al~~------------------lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
++.+|+++. +++.+|.++.. .|++++|+..|++++ ..|+++...
T Consensus 68 l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~ 133 (225)
T 2yhc_A 68 IRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT 133 (225)
T ss_dssp HHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred HHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence 999999875 89999999986 579999999999999 788776543
No 77
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.16 E-value=2.4e-10 Score=115.16 Aligned_cols=101 Identities=12% Similarity=0.191 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..+...|++++|+..|++++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 213 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al 274 (365)
T 4eqf_A 213 PDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYS------------------LWNRLGATLANGDRSEEAVEAYTRAL 274 (365)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 556778888888999999999999999988888765 88999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+++|+++.+++.+|.+|..+|++++|+..|++++ ..|++
T Consensus 275 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 314 (365)
T 4eqf_A 275 EIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKS 314 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC
T ss_pred hcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 9999999999999999999999999999999999 66653
No 78
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*
Probab=99.15 E-value=6.6e-11 Score=104.33 Aligned_cols=45 Identities=22% Similarity=0.344 Sum_probs=40.9
Q ss_pred cccccCCCCC---CceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCC
Q 035535 316 ASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLP 360 (518)
Q Consensus 316 ~s~~NHsC~P---N~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~ 360 (518)
+.++||||.| ||.....++++.++|+|||++|||||+.|.+...+
T Consensus 100 ~RfINhSc~p~eqNl~~~~~~~~I~~~A~RdI~~GEEL~~dY~~~~~~ 147 (149)
T 2qpw_A 100 LRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNGEDNP 147 (149)
T ss_dssp GGGCEECBTTBTCCEEEEEETTEEEEEESSCBCTTCBCEECCCCCCCC
T ss_pred eeeeeccCChhhcCEEEEEECCEEEEEEccCCCCCCEEEEccCCccCC
Confidence 6899999999 99987778899999999999999999999886554
No 79
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.15 E-value=2.3e-10 Score=109.76 Aligned_cols=103 Identities=15% Similarity=0.067 Sum_probs=96.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..++++
T Consensus 42 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a 103 (275)
T 1xnf_A 42 RAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPE------------------VFNYLGIYLTQAGNFDAAYEAFDSV 103 (275)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998766 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++
T Consensus 104 l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~ 145 (275)
T 1xnf_A 104 LELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDP 145 (275)
T ss_dssp HHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred HhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCh
Confidence 99999999999999999999999999999999999 776554
No 80
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.14 E-value=3.1e-10 Score=112.72 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+++.+...|..++..|+|++|+..|++++..+|.++. ++.++|.++..+|++++|+..++++
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~ 63 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI------------------AYYRRATVFLAMGKSKAALPDLTKV 63 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 5788999999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
++++|++..+++.+|.++..+|++++|+..|++++ ..|
T Consensus 64 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~ 102 (359)
T 3ieg_A 64 IALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP 102 (359)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCC
T ss_pred HHhCCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999 676
No 81
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.14 E-value=9.8e-11 Score=100.48 Aligned_cols=85 Identities=15% Similarity=0.170 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
++.|+|.++++.|+|++|+..+++|++++|.++.+|+.+|.+|..+|++++|+.+|++++ .+|+++.....+...+...
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 94 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLVAM 94 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC
Confidence 899999999999999999999999999999999999999999999999999999999999 8887776666666666666
Q ss_pred HHHHHH
Q 035535 136 KKLEYQ 141 (518)
Q Consensus 136 ~~~~~~ 141 (518)
++.++.
T Consensus 95 ~~~~~A 100 (126)
T 4gco_A 95 REWSKA 100 (126)
T ss_dssp TCHHHH
T ss_pred CCHHHH
Confidence 555443
No 82
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.14 E-value=4.3e-10 Score=106.44 Aligned_cols=137 Identities=10% Similarity=0.071 Sum_probs=104.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh-hhhH-------HHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK-QEAS-------QLSKLKKSLCLALSNRAEARSRLRDFDNA 74 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~-~~~~-------~~~~~~~~l~~~~~nra~a~~~lg~~~~A 74 (518)
+..+...|..++..|++++|+..|.+++.+.|....... ...+ ...........++.++|.++...|++++|
T Consensus 79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A 158 (258)
T 3uq3_A 79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA 158 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence 567889999999999999999999999997654210000 0000 00000111234899999999999999999
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 75 LRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 75 l~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+..++++++++|.++.+++.+|.++..+|++++|+..|++++ ..|+++.....+...+...++.+
T Consensus 159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~ 224 (258)
T 3uq3_A 159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYA 224 (258)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHH
Confidence 999999999999999999999999999999999999999999 77766655555555555544443
No 83
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.13 E-value=1.8e-10 Score=116.09 Aligned_cols=105 Identities=10% Similarity=0.041 Sum_probs=97.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+..+|..+++.|+|++|+..|++++..+|.++. ++.++|.++..+|++++|+..+++++
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~al 126 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAE------------------AWQFLGITQAENENEQAAIVALQRCL 126 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 345889999999999999999999999999998876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
+++|+++.+++.+|.+|..+|++++|+..|++++ ..|+++...
T Consensus 127 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 170 (365)
T 4eqf_A 127 ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLV 170 (365)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHCC-
T ss_pred hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchHHH
Confidence 9999999999999999999999999999999999 777766543
No 84
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.13 E-value=2.3e-10 Score=112.53 Aligned_cols=116 Identities=15% Similarity=0.057 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH----
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD---- 77 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~---- 77 (518)
..+.+...|..++..|++++|+..|++++..+|+++. +++++|.++..+|++++|+..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~~~~~g~~~~A~~~l~~~ 177 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGE------------------IGLLLAETLIALNRSEDAEAVLXTI 177 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHH------------------HHHHHHHHHHHTTCHHHHHHHHTTS
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchh------------------HHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 4567889999999999999999999999999999876 888888888888888776544
Q ss_pred ------------------------------HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc--CCc
Q 035535 78 ------------------------------CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA--SGS 124 (518)
Q Consensus 78 ------------------------------~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~--~~~ 124 (518)
++++++.+|+++.+++.+|.+|...|++++|+..|++++ ..|++ +..
T Consensus 178 ~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 178 PLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp CGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred chhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 555567788888889999999999999999999999988 77766 333
Q ss_pred HHHHHHHHHHH
Q 035535 125 LETVNGFLEKS 135 (518)
Q Consensus 125 ~~~l~~~l~~~ 135 (518)
...+..++...
T Consensus 258 ~~~l~~~~~~~ 268 (287)
T 3qou_A 258 RXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHc
Confidence 44444444443
No 85
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.13 E-value=1.9e-10 Score=121.59 Aligned_cols=115 Identities=16% Similarity=0.063 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHHHhhhcH-HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEW-KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQ 80 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~-~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~ 80 (518)
.+..+..+|..++..|+| ++|+..|+++++++|+++. +|.++|.+|.++|++++|+..+++
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVE------------------AWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 467788999999999999 9999999999999999876 999999999999999999999999
Q ss_pred HHhcCCCchHHHHHHHHHHHhc---------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 81 ALKIESSHFKALLCKGKILLSL---------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 81 al~l~p~~~ka~~~~g~al~~l---------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
+++++|+ ..+++.+|.++..+ |++++|++.|++++ ..|+++.....+...+...
T Consensus 163 al~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 226 (474)
T 4abn_A 163 ALTHCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL 226 (474)
T ss_dssp HHTTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 9999999 69999999999999 99999999999999 8887776666666666554
No 86
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.13 E-value=4.3e-10 Score=117.99 Aligned_cols=101 Identities=14% Similarity=0.198 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|+.+++.|+|++|+..|++++..+|+ +. ++.++|.+++++|++++|+..++++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~------------------~~~~la~~~~~~g~~~~A~~~~~~a 65 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PV------------------FYSNLSACYVSVGDLKKVVEMSTKA 65 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCC-HH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-HH------------------HHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 5788999999999999999999999999999984 33 8999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
++++|+++.+++.+|.++..+|++++|+..|++++ ..|.+
T Consensus 66 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 106 (514)
T 2gw1_A 66 LELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFN 106 (514)
T ss_dssp HHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSCC
T ss_pred hccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCc
Confidence 99999999999999999999999999999999999 55533
No 87
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.13 E-value=3.3e-10 Score=113.69 Aligned_cols=101 Identities=13% Similarity=0.169 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|++++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 217 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al 278 (368)
T 1fch_A 217 PDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYL------------------LWNKLGATLANGNQSEEAVAAYRRAL 278 (368)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999999888765 88999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+++|+++.+++.+|.++..+|++++|+..|++++ ..|++
T Consensus 279 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 279 ELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999999999999999999 76655
No 88
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.12 E-value=2.9e-10 Score=109.22 Aligned_cols=118 Identities=15% Similarity=0.191 Sum_probs=98.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+.+...|..++..|+|++|+..|++++..+|.++. ++.++|.++..+|+|++|+..+++++
T Consensus 3 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~ 64 (272)
T 3u4t_A 3 DDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPY------------------IYNRRAVCYYELAKYDLAQKDIETYF 64 (272)
T ss_dssp --CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCST------------------THHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456788999999999999999999999999999877 89999999999999999999999999
Q ss_pred hcCCCc----hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHH
Q 035535 83 KIESSH----FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 83 ~l~p~~----~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
+ .|.+ ..+|+.+|.++..+|++++|+..|++++ ..|.++.....+...+...++.+
T Consensus 65 ~-~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~ 125 (272)
T 3u4t_A 65 S-KVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFP 125 (272)
T ss_dssp T-TSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHH
T ss_pred h-ccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHH
Confidence 9 4433 4569999999999999999999999999 77776655555555555444443
No 89
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Probab=99.12 E-value=6.6e-11 Score=123.81 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=57.3
Q ss_pred ceeEeecccccccCCCCCCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEee
Q 035535 308 YGLGLWALASFINHSCSPNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCK 376 (518)
Q Consensus 308 ~~~gl~~~~s~~NHsC~PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~ 376 (518)
.+.+|+|.+.++||||.|||.+.++++.+.++|.|+|++||||++||++. + ..+|+..|||.+.
T Consensus 215 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~a~~~i~~Geei~~~YG~~--~---n~~ll~~YGF~~~ 278 (449)
T 3qxy_A 215 NSPVMVPAADILNHLANHNANLEYSANCLRMVATQPIPKGHEIFNTYGQM--A---NWQLIHMYGFVEP 278 (449)
T ss_dssp CCCBBCTTGGGCEECSSCSEEEEECSSEEEEEESSCBCTTCEEEECCSSC--C---HHHHHHHHSCCCC
T ss_pred CceeEeecHHHhcCCCCCCeEEEEeCCeEEEEECCCcCCCchhhccCCCC--C---HHHHHHhCCCCCC
Confidence 46799999999999999999999999999999999999999999999983 2 2357789999985
No 90
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.12 E-value=7.2e-10 Score=110.06 Aligned_cols=112 Identities=16% Similarity=0.192 Sum_probs=96.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.....|..++..|++++|+..|++++...|.++. ....++.++|.++.++|++++|+..+++++++
T Consensus 236 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~--------------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 236 KLIESAEELIRDGRYTDATSKYESVMKTEPSVAE--------------YTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchH--------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 3456799999999999999999999999988643 12237889999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
+|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+..
T Consensus 302 ~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 348 (359)
T 3ieg_A 302 EPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEK 348 (359)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 99999999999999999999999999999999 77765544333333
No 91
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.12 E-value=7.7e-11 Score=104.10 Aligned_cols=102 Identities=10% Similarity=0.100 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh
Q 035535 22 SVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLS 101 (518)
Q Consensus 22 Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~ 101 (518)
+-..|++++.++|.+.. +++++|.+++..|+|++|+..+++++.++|+++.+|+.+|.++..
T Consensus 6 ~~~~~~~al~~~p~~~~------------------~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 67 (148)
T 2vgx_A 6 GGGTIAMLNEISSDTLE------------------QLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQA 67 (148)
T ss_dssp CCCSHHHHTTCCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhhhHHHHHcCCHhhHH------------------HHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHH
Confidence 34568889999888766 899999999999999999999999999999999999999999999
Q ss_pred ccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHHH
Q 035535 102 LNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 102 lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~~ 141 (518)
+|+|++|+.+|++++ ..|+++.....+...+...++.++.
T Consensus 68 ~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A 108 (148)
T 2vgx_A 68 MGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEA 108 (148)
T ss_dssp TTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHH
T ss_pred HhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHH
Confidence 999999999999999 8898887776677666666555433
No 92
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.12 E-value=5.5e-11 Score=131.50 Aligned_cols=111 Identities=10% Similarity=0.047 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+..+|..++..|+|++|+..|++|++++|+++. +++|+|.++.++|+|++ +..+++|
T Consensus 466 ~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~------------------~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 466 RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELA------------------PKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSH------------------HHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHcCChHH-HHHHHHH
Confidence 4678899999999999999999999999999999987 99999999999999999 9999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
++++|+++.+|+.+|.++..+|++++|+++|++++ ..|+++.....+...
T Consensus 527 l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~ 577 (681)
T 2pzi_A 527 WSTNDGVISAAFGLARARSAEGDRVGAVRTLDEVPPTSRHFTTARLTSAVT 577 (681)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHH
T ss_pred HHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhhcccCcccHHHHHHHHHH
Confidence 99999999999999999999999999999999999 777665544444433
No 93
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.11 E-value=2.7e-10 Score=103.11 Aligned_cols=100 Identities=23% Similarity=0.207 Sum_probs=77.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH------
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD------ 77 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~------ 77 (518)
+.+...|..++..|++++|+..|++++..+|+++. ++.++|.++..+|++++|+..
T Consensus 7 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~------------------a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 7 EQLLKQVSELLQQGEHAQALNVIQTLSDELQSRGD------------------VKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHH------------------HHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 45677888899999999999999999998888766 777777777777777666554
Q ss_pred ----------------------------HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 78 ----------------------------CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 78 ----------------------------~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+.
T Consensus 69 ~~p~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~ 141 (176)
T 2r5s_A 69 EYQDNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGA 141 (176)
T ss_dssp GGCCHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTT
T ss_pred ccCChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCccc
Confidence 444555677778888888888888888888888888888 66654
No 94
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.10 E-value=3.5e-10 Score=101.09 Aligned_cols=112 Identities=13% Similarity=0.084 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|++++...|.+.. ++.++|.++...|++++|+..+++++
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~~~ 69 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVD------------------VALHLGIAYVKTGAVDRGTELLERSL 69 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 566788999999999999999999999999887755 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+.+|.+..+++.+|.++...|++++|++.|++++ ..|.++.....+...+
T Consensus 70 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 120 (186)
T 3as5_A 70 ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVAL 120 (186)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 6665543333333333
No 95
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.10 E-value=9.2e-10 Score=92.59 Aligned_cols=99 Identities=17% Similarity=0.321 Sum_probs=92.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.... ++.++|.++...|++++|+..+++++
T Consensus 35 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~~~ 96 (136)
T 2fo7_A 35 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 96 (136)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 455777899999999999999999999999887655 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+.+|.+..+++.+|.++...|++++|...|++++ ..|
T Consensus 97 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~ 134 (136)
T 2fo7_A 97 ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP 134 (136)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred HhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999999999999999 555
No 96
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.10 E-value=7.9e-10 Score=103.93 Aligned_cols=101 Identities=17% Similarity=0.181 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.... ++.++|.++..+|++++|+..+++++
T Consensus 57 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 118 (243)
T 2q7f_A 57 AIPYINFANLLSSVNELERALAFYDKALELDSSAAT------------------AYYGAGNVYVVKEMYKEAKDMFEKAL 118 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 345556666666667777777777777666665544 66667777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
+++|.+..+++.+|.++..+|++++|+..|++++ ..|++
T Consensus 119 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~ 158 (243)
T 2q7f_A 119 RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEND 158 (243)
T ss_dssp HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTC
T ss_pred HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 7777667777777777777777777777777766 44433
No 97
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.09 E-value=6.2e-10 Score=104.63 Aligned_cols=112 Identities=13% Similarity=0.094 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 91 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 152 (243)
T 2q7f_A 91 ATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGD------------------LFYMLGTVLVKLEQPKLALPYLQRAV 152 (243)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHH------------------HHHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 456788999999999999999999999999988765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+++|+++.+++.+|.++...|++++|+..|++++ ..|+++.....+...+
T Consensus 153 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 203 (243)
T 2q7f_A 153 ELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTY 203 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HhCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 6665544333333333
No 98
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.08 E-value=1.4e-09 Score=104.61 Aligned_cols=121 Identities=14% Similarity=0.174 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHH
Q 035535 3 MQQLRSKATELLL--------REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNA 74 (518)
Q Consensus 3 a~~l~~~Gn~~~~--------~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~A 74 (518)
...+...|..++. .|++++|+..|++++...|++...... ...+......+...++++|.++.++|+|++|
T Consensus 89 ~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a-~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 167 (261)
T 3qky_A 89 PQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDA-TQKIRELRAKLARKQYEAARLYERRELYEAA 167 (261)
T ss_dssp HHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHH-HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHccCHHHH
Confidence 4567889999999 999999999999999999987541100 0111112222334569999999999999999
Q ss_pred HHHHHHHHhcCCC---chHHHHHHHHHHHhc----------cChHHHHHHHHHHH-hccccCCc
Q 035535 75 LRDCEQALKIESS---HFKALLCKGKILLSL----------NRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 75 l~~~~~al~l~p~---~~ka~~~~g~al~~l----------g~~~~A~~~~~~al-~~p~~~~~ 124 (518)
+..++++++.+|+ .+.+++.+|.+|..+ |++++|+..|++++ ..|+++..
T Consensus 168 ~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 168 AVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 9999999999998 578999999999988 99999999999999 78766543
No 99
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.08 E-value=8e-10 Score=87.45 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=62.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++...|.+.. ++.++|.++.++|++++|+..+++++
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~ 70 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 70 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 456667777777777777777777777777776654 67777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHHhcc
Q 035535 83 KIESSHFKALLCKGKILLSLN 103 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg 103 (518)
+++|+++.+++.+|.++..+|
T Consensus 71 ~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 71 ELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred hcCCCCHHHHHHHHHHHHhcC
Confidence 777777777777777776553
No 100
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.08 E-value=1.3e-09 Score=107.09 Aligned_cols=100 Identities=11% Similarity=0.129 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.++. ++.++|.++...|++++|+..+++++
T Consensus 172 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~ 233 (327)
T 3cv0_A 172 AQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQ------------------LWNKLGATLANGNRPQEALDAYNRAL 233 (327)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999999888765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
+++|+++.+++.+|.++..+|++++|++.|++++ ..|.
T Consensus 234 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~ 272 (327)
T 3cv0_A 234 DINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVG 272 (327)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTT
T ss_pred HcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 9999999999999999999999999999999999 7766
No 101
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.08 E-value=1.2e-09 Score=103.70 Aligned_cols=97 Identities=16% Similarity=0.080 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++...|.... ++.++|.++...|++++|+..+++++
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~a~ 98 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSAD------------------AHAALAVVFQTEMEPKLADEEYRKAL 98 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456677777777777777777777777777766554 67777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+++|.+..+++.+|.++...|++++|++.|++++.
T Consensus 99 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 133 (252)
T 2ho1_A 99 ASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQ 133 (252)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred HHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 77777777777777777777777777777777765
No 102
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=6.4e-10 Score=113.12 Aligned_cols=101 Identities=15% Similarity=0.152 Sum_probs=63.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..+...|++++|+..|.+++...|++.. ++.++|.++...|++++|+..++++++
T Consensus 136 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al~ 197 (388)
T 1w3b_A 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAV------------------AWSNLGCVFNAQGEIWLAIHHFEKAVT 197 (388)
T ss_dssp HHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 34556666677777777777777777776666544 566666666666666666666666666
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++|++..+++.+|.++...|++++|+..|++++ ..|+++
T Consensus 198 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 198 LDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 666666666666666666666666666666665 454443
No 103
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.08 E-value=5.5e-10 Score=113.63 Aligned_cols=117 Identities=16% Similarity=0.114 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|+++++..|.++. ++.++|.++.+.|++++|+..+++++
T Consensus 237 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al 298 (388)
T 1w3b_A 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPD------------------AYCNLANALKEKGSVAEAEDCYNTAL 298 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH------------------HHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456778899999999999999999999999888766 88889999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~ 137 (518)
+++|+++.+++.+|.++...|++++|+..|++++ ..|+++.....+...+.+.++
T Consensus 299 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 354 (388)
T 1w3b_A 299 RLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGK 354 (388)
T ss_dssp HHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTC
T ss_pred hhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999999988 667655555555555544443
No 104
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.07 E-value=1.7e-09 Score=100.10 Aligned_cols=103 Identities=19% Similarity=0.160 Sum_probs=86.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..++++
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a 68 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNEL------------------AWLVRAEIYQYLKVNDKAQESFRQA 68 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchH------------------HHHHHHHHHHHcCChHHHHHHHHHH
Confidence 3567788899999999999999999999998887765 7888888888888888888888888
Q ss_pred HhcCCCchHHHHHHHHHHHhc-cChHHHHHHHHHHHhccccC
Q 035535 82 LKIESSHFKALLCKGKILLSL-NRYSMALDCFKETLVDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~l-g~~~~A~~~~~~al~~p~~~ 122 (518)
++++|.+..+++.+|.++... |++++|+..|++++..|.++
T Consensus 69 ~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~ 110 (225)
T 2vq2_A 69 LSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYP 110 (225)
T ss_dssp HHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCS
T ss_pred HHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCc
Confidence 888888888888888888888 88888888888888643344
No 105
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.04 E-value=2.3e-09 Score=99.19 Aligned_cols=116 Identities=11% Similarity=0.037 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~a 81 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++... |++++|+..++++
T Consensus 42 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (225)
T 2vq2_A 42 ELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAE------------------INNNYGWFLCGRLNRPAESMAYFDKA 103 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChH------------------HHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 456788999999999999999999999999988765 899999999999 9999999999999
Q ss_pred Hh--cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 82 LK--IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 82 l~--l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
++ .+|.+..+++.+|.++...|++++|+..|++++ ..|.++.....+...+...+
T Consensus 104 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 104 LADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcC
Confidence 99 778889999999999999999999999999999 77665444444444444333
No 106
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.03 E-value=1.4e-09 Score=104.40 Aligned_cols=110 Identities=5% Similarity=0.063 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++..|+|++|+..|.+++. .|.++. ....++.++|.++..+|++++|+..++++++
T Consensus 38 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~~--------------~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~ 102 (272)
T 3u4t_A 38 YIYNRRAVCYYELAKYDLAQKDIETYFS-KVNATK--------------AKSADFEYYGKILMKKGQDSLAIQQYQAAVD 102 (272)
T ss_dssp TTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTTT--------------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCchh--------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 4566778888888888888888888887 444332 0112578888888888888888888888888
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV 128 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l 128 (518)
++|.++.+++.+|.++..+|++++|+..|++++ ..|.++.....+
T Consensus 103 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l 148 (272)
T 3u4t_A 103 RDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYEL 148 (272)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHH
T ss_pred cCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHH
Confidence 888888888888888888888888888888888 655554433333
No 107
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.02 E-value=1.8e-09 Score=102.52 Aligned_cols=112 Identities=13% Similarity=0.128 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 71 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~~~ 132 (252)
T 2ho1_A 71 ADAHAALAVVFQTEMEPKLADEEYRKALASDSRNAR------------------VLNNYGGFLYEQKRYEEAYQRLLEAS 132 (252)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHH------------------HHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 456777888888888888888888888888877654 66666666666666666666666666
Q ss_pred h--cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 83 K--IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 83 ~--l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
+ .+|.+..+++.+|.++...|++++|+..|++++ ..|.++.....+...+
T Consensus 133 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 185 (252)
T 2ho1_A 133 QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLL 185 (252)
T ss_dssp TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHH
Confidence 6 666666666666666666666666666666666 5554433333333333
No 108
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.02 E-value=2.4e-09 Score=110.64 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=96.9
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..+++.|+|++|+..|++++...|.++. ++.++|.++..+|++++|+..++++
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a 86 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYI------------------AYYRRATVFLAMGKSKAALPDLTKV 86 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 4678899999999999999999999999999998766 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|+++.+++.+|.+|..+|++++|+..|++++ ..|+++
T Consensus 87 l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 128 (450)
T 2y4t_A 87 IQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEN 128 (450)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCCHH
T ss_pred HhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCh
Confidence 99999999999999999999999999999999999 666544
No 109
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.02 E-value=2.4e-09 Score=91.75 Aligned_cols=84 Identities=11% Similarity=0.264 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 55 CLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 55 ~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
+.++.|+|.++++.|+|++|+..+++|++++|+++.+|+.+|.+|..+|+|++|+++|++++ ..|+++.....+...+.
T Consensus 8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~ 87 (127)
T 4gcn_A 8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS 87 (127)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence 44899999999999999999999999999999999999999999999999999999999999 88888777666655555
Q ss_pred HHHHH
Q 035535 134 KSKKL 138 (518)
Q Consensus 134 ~~~~~ 138 (518)
.+...
T Consensus 88 ~lg~~ 92 (127)
T 4gcn_A 88 RAGNA 92 (127)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 54443
No 110
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.02 E-value=2.1e-09 Score=105.70 Aligned_cols=110 Identities=12% Similarity=0.015 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLR-EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~-g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+..+.+.|..+... |++++|+..|++|+.+.|..... .....++.++|.++.++|+|++|+..++++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~------------~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSV------------ALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH------------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCCh------------HHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45678899999996 99999999999999999865320 011237999999999999999999999999
Q ss_pred HhcCCCchH-------HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 82 LKIESSHFK-------ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 82 l~l~p~~~k-------a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++++|++.. +++++|.++..+|++++|+.+|++++ .+|+.+..
T Consensus 185 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~ 235 (292)
T 1qqe_A 185 IKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADS 235 (292)
T ss_dssp HHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-------
T ss_pred HHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCc
Confidence 999987643 68999999999999999999999999 78766543
No 111
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.02 E-value=3.3e-09 Score=104.23 Aligned_cols=102 Identities=12% Similarity=0.039 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLRE-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
...+...|..++..| ++++|+..|.+++..+|.++. ++.++|.++..+|++++|+..++++
T Consensus 90 ~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a 151 (330)
T 3hym_B 90 PVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGP------------------AWIAYGHSFAVESEHDQAMAAYFTA 151 (330)
T ss_dssp THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 345566666666666 666666666666666666554 5666666666666666666666666
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|++..+++.+|.++...|++++|+..|++++ ..|.++
T Consensus 152 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~ 193 (330)
T 3hym_B 152 AQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193 (330)
T ss_dssp HHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH
T ss_pred HHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCCh
Confidence 66666666666666666666666666666666666 445443
No 112
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.01 E-value=3.1e-09 Score=109.76 Aligned_cols=110 Identities=16% Similarity=0.197 Sum_probs=95.8
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|++++|+..|++++...|.++. ....++.++|.++.++|++++|+..+++++++
T Consensus 259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 324 (450)
T 2y4t_A 259 KLIESAEELIRDGRYTDATSKYESVMKTEPSIAE--------------YTVRSKERICHCFSKDEKPVEAIRVCSEVLQM 324 (450)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHH--------------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchH--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 3455699999999999999999999999888542 11238999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV 128 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l 128 (518)
+|+++.+|+.+|.++..+|++++|+..|++++ ..|+++.....+
T Consensus 325 ~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 369 (450)
T 2y4t_A 325 EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGL 369 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHH
Confidence 99999999999999999999999999999999 777655443333
No 113
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.01 E-value=6.5e-10 Score=117.59 Aligned_cols=102 Identities=21% Similarity=0.294 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.++.+..+|+.+++.|+|++|+..|++++..+|+++. ++.++|.++.++|++++|+..++++
T Consensus 24 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a 85 (537)
T 3fp2_A 24 YAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPV------------------FYSNISACYISTGDLEKVIEFTTKA 85 (537)
T ss_dssp HHHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4678999999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|+++.+++.+|.++..+|++++|+..|+ ++ ..|+..
T Consensus 86 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~-~~~~~~~~~ 126 (537)
T 3fp2_A 86 LEIKPDHSKALLRRASANESLGNFTDAMFDLS-VLSLNGDFD 126 (537)
T ss_dssp HHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH-HHC------
T ss_pred HhcCCchHHHHHHHHHHHHHcCCHHHHHHHHH-HHhcCCCCC
Confidence 99999999999999999999999999999996 66 666544
No 114
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.01 E-value=5.1e-10 Score=97.60 Aligned_cols=99 Identities=13% Similarity=0.085 Sum_probs=83.9
Q ss_pred HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc
Q 035535 24 QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN 103 (518)
Q Consensus 24 ~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg 103 (518)
..|.+++.++|++.. +++++|.++++.|+|++|+..+++++.++|+++.+|+.+|.++..+|
T Consensus 5 ~~l~~al~~~p~~~~------------------~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g 66 (142)
T 2xcb_A 5 GTLAMLRGLSEDTLE------------------QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66 (142)
T ss_dssp ----CCTTCCHHHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hhHHHHHcCCHHHHH------------------HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHh
Confidence 456777777777665 89999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHHHH
Q 035535 104 RYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKLEY 140 (518)
Q Consensus 104 ~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~~~ 140 (518)
+|++|+.+|++++ ..|+++.....+...+...++.++
T Consensus 67 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~ 104 (142)
T 2xcb_A 67 LYEQALQSYSYGALMDINEPRFPFHAAECHLQLGDLDG 104 (142)
T ss_dssp CHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHH
T ss_pred hHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHH
Confidence 9999999999999 888888776666666666555543
No 115
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.01 E-value=1.7e-09 Score=106.23 Aligned_cols=117 Identities=11% Similarity=-0.000 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQAL 82 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al 82 (518)
..+...+..++..|++++|+..|.+++...|.++. ++.++|.++...| ++++|+..+++++
T Consensus 57 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~~A~~~~~~a~ 118 (330)
T 3hym_B 57 SCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPV------------------SWFAVGCYYLMVGHKNEHARRYLSKAT 118 (330)
T ss_dssp TTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTH------------------HHHHHHHHHHHSCSCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 44667889999999999999999999999999876 9999999999999 9999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
+++|.++.+|+.+|.++..+|++++|+..|++++ ..|++......+...+...++.
T Consensus 119 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 119 TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCH
T ss_pred HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhH
Confidence 9999999999999999999999999999999999 7776655544455554444433
No 116
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.01 E-value=1.2e-09 Score=110.12 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+.|..+++.|+|++|+..|++||.++|+++. +++++|.++..+|+|++|+.++++|+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~al 257 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEK------------------GLSRRGEAHLAVNDFELARADFQKVL 257 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 578899999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHH-HHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMAL-DCFKETL 116 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~-~~~~~al 116 (518)
+++|++..+++.+|.++..+|++++|. ..|++++
T Consensus 258 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 258 QLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999994 4566665
No 117
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.01 E-value=1.8e-10 Score=103.90 Aligned_cols=111 Identities=11% Similarity=0.074 Sum_probs=91.1
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
.++.++..|+|++|+..|.+++..+|.++. ++.++|.++...|++++|+..++++++++|++
T Consensus 16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 77 (177)
T 2e2e_A 16 PLHQFASQQNPEAQLQALQDKIRANPQNSE------------------QWALLGEYYLWQNDYSNSLLAYRQALQLRGEN 77 (177)
T ss_dssp TTCCCC-----CCCCHHHHHHHHHCCSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSC
T ss_pred hhhhhhhccCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Confidence 345567889999999999999999998876 99999999999999999999999999999999
Q ss_pred hHHHHHHHHH-HHhccCh--HHHHHHHHHHH-hccccCCcHHHHHHHHHHHHH
Q 035535 89 FKALLCKGKI-LLSLNRY--SMALDCFKETL-VDAQASGSLETVNGFLEKSKK 137 (518)
Q Consensus 89 ~ka~~~~g~a-l~~lg~~--~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~ 137 (518)
+.+++.+|.+ +...|++ ++|+..|++++ ..|+++.....+...+...++
T Consensus 78 ~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~ 130 (177)
T 2e2e_A 78 AELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQAN 130 (177)
T ss_dssp HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc
Confidence 9999999999 8899999 99999999999 777665554445444444333
No 118
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.00 E-value=4.2e-09 Score=103.55 Aligned_cols=109 Identities=10% Similarity=-0.041 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-cCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-RDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-g~~~~Al~~~~~a 81 (518)
+..+.+.|+.+...|+|++|+..|++|+.+.|.... ......++.|+|.+|... |++++|+..+++|
T Consensus 77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~A 144 (292)
T 1qqe_A 77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQ------------FRRGANFKFELGEILENDLHDYAKAIDCYELA 144 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 567788999999999999999999999999876533 011233899999999995 9999999999999
Q ss_pred HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+++.|.+ ..++..+|.++..+|+|++|+.+|++++ ..|+++.
T Consensus 145 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 193 (292)
T 1qqe_A 145 GEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL 193 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred HHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence 9998754 5679999999999999999999999999 6665543
No 119
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.00 E-value=2.1e-09 Score=107.77 Aligned_cols=103 Identities=10% Similarity=0.064 Sum_probs=95.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+..+|..++..|+|++|+..|++++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~al 125 (368)
T 1fch_A 64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHME------------------AWQYLGTTQAENEQELLAISALRRCL 125 (368)
T ss_dssp CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 345788999999999999999999999999998766 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+++|+++.+++.+|.++..+|++++|+..|++++ ..|.++.
T Consensus 126 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 167 (368)
T 1fch_A 126 ELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH 167 (368)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG
T ss_pred hcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH
Confidence 9999999999999999999999999999999999 7776554
No 120
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.99 E-value=4.1e-09 Score=99.36 Aligned_cols=105 Identities=8% Similarity=-0.010 Sum_probs=90.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh---------------
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR--------------- 67 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~--------------- 67 (518)
...+...|..+++.|+|++|+..|++++...|++... ..+++++|.++..
T Consensus 41 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~---------------~~a~~~~g~~~~~~~~~~~~~~~~~~~~ 105 (225)
T 2yhc_A 41 QQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---------------DYVMYMRGLTNMALDDSALQGFFGVDRS 105 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTH---------------HHHHHHHHHHHHHHHC------------
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcH---------------HHHHHHHHHHHHhhhhhhhhhhhccchh
Confidence 3578889999999999999999999999999987641 1167888888776
Q ss_pred ---ccCHHHHHHHHHHHHhcCCCchHHH-----------------HHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 68 ---LRDFDNALRDCEQALKIESSHFKAL-----------------LCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 68 ---lg~~~~Al~~~~~al~l~p~~~ka~-----------------~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+|++++|+..++++++.+|++..++ +.+|.+|+..|+|++|+..|++++ ..|+++
T Consensus 106 ~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~ 181 (225)
T 2yhc_A 106 DRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQ 181 (225)
T ss_dssp --CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSH
T ss_pred hcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCC
Confidence 6799999999999999999987655 678999999999999999999999 777654
No 121
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.99 E-value=2.5e-09 Score=105.48 Aligned_cols=103 Identities=13% Similarity=0.081 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH----HhccCHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR----SRLRDFDNALRD 77 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~----~~lg~~~~Al~~ 77 (518)
+.+.+...|..+.+.|++++|+..|++++..+|++.. .+++.++ ...|++++|+..
T Consensus 129 ~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~--------------------~~l~~a~~~l~~~~~~~~eA~~~ 188 (291)
T 3mkr_A 129 SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL--------------------TQLATAWVSLAAGGEKLQDAYYI 188 (291)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH--------------------HHHHHHHHHHHHCTTHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH--------------------HHHHHHHHHHHhCchHHHHHHHH
Confidence 3556777888888889999999999998888776531 1222111 122455555555
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 78 CEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
++++++.+|+++.+|+.+|.++..+|++++|+..|++++ .+|+++..
T Consensus 189 ~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 189 FQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 555555555555555555555555555555555555555 44444433
No 122
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.98 E-value=2.6e-09 Score=87.37 Aligned_cols=67 Identities=16% Similarity=0.201 Sum_probs=63.4
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+++++|.+++.+|+|++|+..++++++++|+++.+|+.+|.+|..+|++++|++.|++++ ..|..+.
T Consensus 9 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~ 76 (100)
T 3ma5_A 9 TRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGT 76 (100)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCc
Confidence 899999999999999999999999999999999999999999999999999999999999 6665444
No 123
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.97 E-value=4e-09 Score=92.92 Aligned_cols=96 Identities=19% Similarity=0.193 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 47 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~a~ 108 (166)
T 1a17_A 47 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------------GYYRRAASNMALGKFRAALRDYETVV 108 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 566788999999999999999999999999998766 89999999999999999999999999
Q ss_pred hcCCCchHHHHH--HHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIESSHFKALLC--KGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~~ka~~~--~g~al~~lg~~~~A~~~~~~al 116 (518)
+++|.+..++.. ++..+...|++++|+..+.++.
T Consensus 109 ~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 109 KVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 999999988854 4555888999999999998876
No 124
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.95 E-value=4.7e-09 Score=100.41 Aligned_cols=104 Identities=14% Similarity=0.173 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+....... ..+ ....++.++|.++..+|++++|+..+++++
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 112 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGK--DHP--------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL 112 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCT--TCH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCC--cch--------HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 5678889999999999999999999999986322100 000 112389999999999999999999999999
Q ss_pred hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++ +|....+++.+|.++..+|++++|+..|++++
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 113 EIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98 57889999999999999999999999999999
No 125
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=98.94 E-value=3.3e-09 Score=104.04 Aligned_cols=104 Identities=9% Similarity=0.003 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+..+|..++..|+|++|+..|++++...|.+.. ++.++|.++...|++++|+..++++++
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~a~~ 83 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREE------------------AWRSLGLTQAENEKDGLAIIALNHARM 83 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 45788999999999999999999999999998766 899999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSL 125 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~ 125 (518)
++|++..+++.+|.++...|++++|++.|++++ ..|.+....
T Consensus 84 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~ 126 (327)
T 3cv0_A 84 LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLG 126 (327)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTTTC-
T ss_pred cCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHH
Confidence 999999999999999999999999999999999 777666543
No 126
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=98.94 E-value=8.5e-09 Score=101.59 Aligned_cols=95 Identities=13% Similarity=0.133 Sum_probs=85.5
Q ss_pred HHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 11 TELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 11 n~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
+.+...|++++|+..|+++++..|+++. ++.++|.++.++|++++|+..++++++++|+++.
T Consensus 174 ~l~~~~~~~~eA~~~~~~~l~~~p~~~~------------------~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~ 235 (291)
T 3mkr_A 174 SLAAGGEKLQDAYYIFQEMADKCSPTLL------------------LLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPE 235 (291)
T ss_dssp HHHHCTTHHHHHHHHHHHHHHHSCCCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHhCchHHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH
Confidence 3344568999999999999999998776 9999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhccChHH-HHHHHHHHH-hccccCC
Q 035535 91 ALLCKGKILLSLNRYSM-ALDCFKETL-VDAQASG 123 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~-A~~~~~~al-~~p~~~~ 123 (518)
+++++|.++..+|++++ |.+++++++ ..|+++.
T Consensus 236 ~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~ 270 (291)
T 3mkr_A 236 TLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPF 270 (291)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChH
Confidence 99999999999999987 568889999 7876653
No 127
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.94 E-value=2.4e-09 Score=86.63 Aligned_cols=91 Identities=13% Similarity=0.168 Sum_probs=76.0
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCC
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIES 86 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p 86 (518)
.++|..++..|+|++|+..|++++..+|.++. .+++++|.++..+|++++|+..++++++++|
T Consensus 4 ~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~-----------------~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 4 LKTIKELINQGDIENALQALEEFLQTEPVGKD-----------------EAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHH-----------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 56888999999999999999999998887632 1788999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++..+++. +.+.+|+..|++++ ..|+++
T Consensus 67 ~~~~~~~~--------~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 67 DSPALQAR--------KMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp TSTHHHHH--------HHHHHHHHHHCCTTHHHHCCS
T ss_pred CcHHHHHH--------HHHHHHHHHHHHHhccCcccc
Confidence 99888754 67788888888888 666544
No 128
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.93 E-value=5.4e-09 Score=112.59 Aligned_cols=104 Identities=8% Similarity=-0.088 Sum_probs=97.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
+...+...|..++..|++++|+..|+++++++|++.. ++.++|.++.++|++++|++.++++
T Consensus 56 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 56 HPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPG------------------IALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHHHhc---cChHHHHHHHHHHH-hccccCC
Q 035535 82 LKIESSHFKALLCKGKILLSL---NRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~l---g~~~~A~~~~~~al-~~p~~~~ 123 (518)
++++|++..+++.+|.++..+ |++++|++.|++++ ..|++..
T Consensus 118 l~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 163 (568)
T 2vsy_A 118 HQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGVGAVE 163 (568)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred HHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCCcccC
Confidence 999999999999999999999 99999999999999 7776543
No 129
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=98.92 E-value=4.8e-09 Score=100.47 Aligned_cols=112 Identities=16% Similarity=0.036 Sum_probs=91.6
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHH
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKAL 92 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~ 92 (518)
+...|+|++|+..|++++...+.... .. ..++.++|.++...|++++|+..++++++++|+++.++
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~---~~-----------~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~ 80 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDD---ER-----------AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHH---HH-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHH
T ss_pred cCccchHHHHHHHHHHHHhcccccCc---hh-----------HHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHH
Confidence 34568999999999999987432110 00 12899999999999999999999999999999999999
Q ss_pred HHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHHHH
Q 035535 93 LCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 93 ~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
+.+|.++..+|++++|+..|++++ ..|.++.....+...+...++.
T Consensus 81 ~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~ 127 (275)
T 1xnf_A 81 NYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD 127 (275)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence 999999999999999999999999 7877665555555555444443
No 130
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.89 E-value=3.9e-08 Score=85.26 Aligned_cols=102 Identities=18% Similarity=0.171 Sum_probs=89.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+++++
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 76 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERIAYSNLGNAYIFLGEFETASEYYKKTL 76 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCC------------chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567788999999999999999999999999876543 11234489999999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.+.. ..+++.+|.++..+|++++|+..+++++
T Consensus 77 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 77 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 885542 6789999999999999999999999999
No 131
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=98.88 E-value=6.8e-09 Score=109.70 Aligned_cols=128 Identities=13% Similarity=0.125 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---------hhhHHH-HHHHH------HHHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---------QEASQL-SKLKK------SLCLALSNRAEARS 66 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---------~~~~~~-~~~~~------~l~~~~~nra~a~~ 66 (518)
+..+...|..++..|++++|+..|.+++...|. ...-. ...++. .-+.+ ....++.++|.++.
T Consensus 243 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 243 ALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 345666677777777777777777777777665 22000 000000 00000 00125566666666
Q ss_pred hccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 67 RLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 67 ~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
.+|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+...
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 387 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEI 387 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 66666666666666666666666666666666666666666666666666 555444333333333
No 132
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=98.86 E-value=1.3e-08 Score=97.37 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=89.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+......++ .+ ....++.++|.++..+|++++|+..+++++
T Consensus 85 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al 154 (283)
T 3edt_B 85 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKF--HP--------DVAKQLNNLALLCQNQGKAEEVEYYYRRAL 154 (283)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTT--CH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC--Ch--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 45678899999999999999999999999853321100 00 112389999999999999999999999999
Q ss_pred hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++ +|....+++.+|.++..+|++++|+..|++++
T Consensus 155 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l 196 (283)
T 3edt_B 155 EIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEIL 196 (283)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99 78889999999999999999999999999999
No 133
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.84 E-value=9.5e-09 Score=108.01 Aligned_cols=94 Identities=17% Similarity=0.154 Sum_probs=84.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.++|..+++.|+|++|+..|++||.++|++.. +|+++|.+|+.+|+|++|+.++++|+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~~g~a~~~~g~~~~A~~~~~~al 378 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEK------------------GLYRRGEAQLLMNEFESAKGDFEKVL 378 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 567889999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKE 114 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~ 114 (518)
+++|++..++..++.++..++++++|...+-+
T Consensus 379 ~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~ 410 (457)
T 1kt0_A 379 EVNPQNKAARLQISMCQKKAKEHNERDRRIYA 410 (457)
T ss_dssp TTC----CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865433
No 134
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.84 E-value=2.2e-08 Score=104.22 Aligned_cols=118 Identities=12% Similarity=0.037 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++..|+|++|++.|++|+++.+....... .+. ....|.|+|.+|..+|+|++|+.+++++++
T Consensus 52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~-~~~--------~~~~~~nla~~y~~~g~~~~A~~~~~ka~~ 122 (472)
T 4g1t_A 52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQA-EIR--------SLVTWGNYAWVYYHMGRLSDVQIYVDKVKH 122 (472)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGC-TTT--------THHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCcccc-chH--------HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 44667899999999999999999999998765432110 011 123799999999999999999999999998
Q ss_pred cC--------CCchHHHHHHHHHHHhc--cChHHHHHHHHHHH-hccccCCcHHHHHH
Q 035535 84 IE--------SSHFKALLCKGKILLSL--NRYSMALDCFKETL-VDAQASGSLETVNG 130 (518)
Q Consensus 84 l~--------p~~~ka~~~~g~al~~l--g~~~~A~~~~~~al-~~p~~~~~~~~l~~ 130 (518)
+. +..+.++..+|.++..+ ++|++|+.+|++++ .+|+++.....+..
T Consensus 123 i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~ 180 (472)
T 4g1t_A 123 VCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAI 180 (472)
T ss_dssp HHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 73 45678899999888765 47999999999999 88877654443333
No 135
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.84 E-value=1.7e-08 Score=108.32 Aligned_cols=115 Identities=12% Similarity=0.174 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..+.+.|++++|+..|+++++..|.....+.. ...+|.+++.++.+.|++++|+..+++++
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 543 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP-----------WAATWANLGHAYRKLKMYDAAIDALNQGL 543 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG-----------GHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3456677777777788888888888877775542211000 02289999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV 128 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l 128 (518)
+++|+++.+|+.+|.+|...|++++|++.|++++ ..|+++.....+
T Consensus 544 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l 590 (597)
T 2xpi_A 544 LLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLL 590 (597)
T ss_dssp HHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHH
Confidence 9999999999999999999999999999999999 787665443333
No 136
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.83 E-value=1.5e-08 Score=84.91 Aligned_cols=86 Identities=15% Similarity=0.034 Sum_probs=80.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 46 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~~~ 107 (131)
T 2vyi_A 46 AVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSK------------------AYGRMGLALSSLNKHVEAVAYYKKAL 107 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999988765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYS 106 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~ 106 (518)
+++|++..+++.+|.++..+|+++
T Consensus 108 ~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 108 ELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred hcCccchHHHHHHHHHHHHHhcCC
Confidence 999999999999999999998863
No 137
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.83 E-value=1.2e-08 Score=86.46 Aligned_cols=83 Identities=11% Similarity=0.075 Sum_probs=73.3
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
.+.++|.++++.|+|++|+..++++++++|+++.+|+.+|.++..+|+|++|+.+|++++ ..|+++.....+...+...
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~ 85 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAV 85 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999 8887766555555555555
Q ss_pred HHHH
Q 035535 136 KKLE 139 (518)
Q Consensus 136 ~~~~ 139 (518)
++.+
T Consensus 86 ~~~~ 89 (126)
T 3upv_A 86 KEYA 89 (126)
T ss_dssp TCHH
T ss_pred hCHH
Confidence 4443
No 138
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.82 E-value=1.3e-08 Score=90.43 Aligned_cols=86 Identities=14% Similarity=0.049 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+.|..+++.|+|++|+..|+++|.++|.++. +|+++|.++..+|+|++|+.++++++
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEK------------------ALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchH------------------HHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 467889999999999999999999999999999876 99999999999999999999999999
Q ss_pred hcCCCch-HHHHHHHHHHHhccChH
Q 035535 83 KIESSHF-KALLCKGKILLSLNRYS 106 (518)
Q Consensus 83 ~l~p~~~-ka~~~~g~al~~lg~~~ 106 (518)
+++|++. .....++.+...++++.
T Consensus 125 ~l~p~~~~~~~~~l~~~~~~~~~~~ 149 (162)
T 3rkv_A 125 RNHPAAASVVAREMKIVTERRAEKK 149 (162)
T ss_dssp HHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 9999998 45556666665554443
No 139
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=98.82 E-value=2.4e-08 Score=107.18 Aligned_cols=112 Identities=11% Similarity=0.011 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..+.+.|++++|+..|++++...|.+.. +|.+++.++.+.|++++|++.++++++
T Consensus 374 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 435 (597)
T 2xpi_A 374 VTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGP------------------AWIGFAHSFAIEGEHDQAISAYTTAAR 435 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455566666666666666666666666655544 566666666666666666666666666
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLE 133 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~ 133 (518)
.+|++..+|+.+|.+|...|++++|++.|++++ ..|.++.....+...+.
T Consensus 436 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 486 (597)
T 2xpi_A 436 LFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAF 486 (597)
T ss_dssp TTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred hCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 666666666666666666666666666666666 55544433333333333
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.82 E-value=3.1e-09 Score=112.40 Aligned_cols=94 Identities=19% Similarity=0.189 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+.+.|..+++.|+|++|+..|++|++++|.++. +++++|.++..+|++++|++.+++|
T Consensus 39 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~------------------~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 39 NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIK------------------GYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHH--HHhccChHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKI--LLSLNRYSMALDCFK 113 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~a--l~~lg~~~~A~~~~~ 113 (518)
++++|++..++..++.+ +...|+|++|++.++
T Consensus 101 l~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 101 VKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999 889999999999999
No 141
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.82 E-value=2.1e-08 Score=98.30 Aligned_cols=103 Identities=14% Similarity=0.097 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+|+......+. .......+++|+|.+|.++|+|++|+..+++|+
T Consensus 155 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~-----------~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al 223 (293)
T 3u3w_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHD-----------NEEFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSC-----------CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccc-----------chhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 346889999999999999999999999987654321 011234489999999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccC-hHHHHHHHHHHH
Q 035535 83 KIESSH------FKALLCKGKILLSLNR-YSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~-~~~A~~~~~~al 116 (518)
++.+.. +.+|+.+|.++..+|+ +++|+++|++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 986543 7899999999999994 799999999999
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.82 E-value=2.8e-08 Score=97.41 Aligned_cols=103 Identities=14% Similarity=0.109 Sum_probs=86.3
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+|+.+....+..+ .....+++|+|.+|..+|+|++|+..+++++
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----------~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal 223 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----------EFDVKVRYNHAKALYLDSRYEESLYQVNKAI 223 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----------cchHHHHHhHHHHHHHHhhHHHHHHHHHHHH
Confidence 45788899999999999999999999997654332200 0112389999999999999999999999999
Q ss_pred hcCCC------chHHHHHHHHHHHhccChHHH-HHHHHHHH
Q 035535 83 KIESS------HFKALLCKGKILLSLNRYSMA-LDCFKETL 116 (518)
Q Consensus 83 ~l~p~------~~ka~~~~g~al~~lg~~~~A-~~~~~~al 116 (518)
++.+. ...+|+.+|.+|..+|++++| ..+|++|+
T Consensus 224 ~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 224 EISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 88643 278999999999999999999 88899998
No 143
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.81 E-value=2.2e-08 Score=84.90 Aligned_cols=85 Identities=9% Similarity=0.024 Sum_probs=75.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
.++++|.++++.|++++|+..++++++++|+++.+|+.+|.++..+|++++|+.+|++++ ..|+++.....+...+...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 578999999999999999999999999999999999999999999999999999999999 8888777666777777666
Q ss_pred HHHHHH
Q 035535 136 KKLEYQ 141 (518)
Q Consensus 136 ~~~~~~ 141 (518)
++.++.
T Consensus 99 g~~~~A 104 (121)
T 1hxi_A 99 HNANAA 104 (121)
T ss_dssp HHHHHH
T ss_pred CCHHHH
Confidence 665543
No 144
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.80 E-value=1.6e-08 Score=93.01 Aligned_cols=94 Identities=10% Similarity=0.030 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+.+.|..++..|+|++|+..|++++.++|.+.. +++++|.++..+|+|++|+..++++++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVK------------------ALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 67888999999999999999999999999998766 999999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHH-HHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMAL-DCFKET 115 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~-~~~~~a 115 (518)
++|++..++..++.++..+++++++. ..|.+.
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 183 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGM 183 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC---------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999888 334443
No 145
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.80 E-value=2e-08 Score=84.74 Aligned_cols=84 Identities=17% Similarity=0.199 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 50 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 111 (133)
T 2lni_A 50 AKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIK------------------GYTRKAAALEAMKDYTKAMDVYQKAL 111 (133)
T ss_dssp HHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 567888999999999999999999999999998766 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccC
Q 035535 83 KIESSHFKALLCKGKILLSLNR 104 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~ 104 (518)
+++|.+..+++.++.++..+|+
T Consensus 112 ~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 112 DLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHCGGGTHHHHHHHHHHHHHTC
T ss_pred HhCCCchHHHHHHHHHHHHhcC
Confidence 9999999999999999988764
No 146
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.79 E-value=6.6e-08 Score=94.40 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|++++...|.++. ....++.++|.++...|++++|+..+++++
T Consensus 5 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 70 (338)
T 3ro2_A 5 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDL 70 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 467888999999999999999999999999877532 122389999999999999999999999999
Q ss_pred hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++ .|....+++.+|.++..+|++++|+..|++++ ..+...
T Consensus 71 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 117 (338)
T 3ro2_A 71 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 117 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhc
Confidence 88 56678899999999999999999999999999 555443
No 147
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.79 E-value=4.6e-09 Score=105.85 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=58.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+.+.|..+++.|+|++|+..|+++|.++|++.. +|+++|.+|..+|+|++|+.++++++++
T Consensus 232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~a~~~~g~~~~A~~~l~~al~l 293 (338)
T 2if4_A 232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPK------------------ALFRRGKAKAELGQMDSARDDFRKAQKY 293 (338)
T ss_dssp HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 6788999999999999999999999999998876 9999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHH-HhccChHHHHHHHHHHH-hccccCC
Q 035535 85 ESSHFKALLCKGKIL-LSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 85 ~p~~~ka~~~~g~al-~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
+|++..++..++.+. ...+.++.+...|++++ ..|.++.
T Consensus 294 ~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~~l~~~p~~~~ 334 (338)
T 2if4_A 294 APDDKAIRRELRALAEQEKALYQKQKEMYKGIFKGKDEGGA 334 (338)
T ss_dssp -----------------------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCC
Confidence 999999999999984 45577888999999999 6765543
No 148
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.79 E-value=3.7e-08 Score=100.45 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|++++...|.+.. ....++.++|.++..+|++++|+..+++++
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLR--------------TLSAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChh--------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999887642 123389999999999999999999999999
Q ss_pred hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hc
Q 035535 83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VD 118 (518)
Q Consensus 83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~ 118 (518)
++ +|....+++.+|.+|..+|++++|+..|++++ ..
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 156 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLA 156 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 98 67888999999999999999999999999999 53
No 149
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.78 E-value=6.3e-08 Score=88.25 Aligned_cols=103 Identities=10% Similarity=0.045 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++.+...... ......++.++|.++..+|++++|+..++++
T Consensus 25 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 25 ASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD------------HTAEHRALHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567888999999999999999999999998765432 0112348999999999999999999999999
Q ss_pred Hhc------CC-CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 82 LKI------ES-SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 82 l~l------~p-~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+++ +| ....+++.+|.++..+|++++|+..+++++
T Consensus 93 l~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 93 RELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 998 33 346789999999999999999999999999
No 150
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.78 E-value=4.4e-08 Score=88.34 Aligned_cols=114 Identities=15% Similarity=0.045 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhh-----------hhHHHHHHHHH------HHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQ-----------EASQLSKLKKS------LCLALSNRAEA 64 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~-----------~~~~~~~~~~~------l~~~~~nra~a 64 (518)
+...+...|..++..|++++|+..|++++...| ++..... ..+....+.+. ...+++++|.+
T Consensus 39 ~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~ 117 (176)
T 2r5s_A 39 RGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DNSYKSLIAKLELHQQAAESPELKRLEQELAANPDNFELACELAVQ 117 (176)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-ChHHHHHHHHHHHHhhcccchHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 456788899999999999999999999988877 3321000 00001111111 13589999999
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 65 RSRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+..+|++++|+..++++++++|++ ..+++.+|.++..+|++++|+..|++++
T Consensus 118 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 118 YNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 999999999999999999999976 6699999999999999999999999988
No 151
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.78 E-value=5.6e-08 Score=98.84 Aligned_cols=105 Identities=12% Similarity=0.165 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..+...|+|++|+..|.+|+.+.+.... ......++.|+|.++..+|++++|+..+++|+
T Consensus 184 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al 251 (383)
T 3ulq_A 184 LQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ------------PQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAI 251 (383)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC------------hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456788999999999999999999999999876543 11234589999999999999999999999999
Q ss_pred h-----cC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 83 K-----IE-SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~-----l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+ .+ |..+.+++.+|.++..+|++++|+..|++++ ..+
T Consensus 252 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 295 (383)
T 3ulq_A 252 AVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ 295 (383)
T ss_dssp HHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9 57 8889999999999999999999999999999 443
No 152
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.78 E-value=1.7e-08 Score=89.73 Aligned_cols=86 Identities=14% Similarity=0.150 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCC-------chH-----HHHHHHHHHHhccChHHHHHHHHHHH-h-----
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESS-------HFK-----ALLCKGKILLSLNRYSMALDCFKETL-V----- 117 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~-------~~k-----a~~~~g~al~~lg~~~~A~~~~~~al-~----- 117 (518)
..+.++|.+++++|+|++|+..|++||+++|+ +.. +|+++|.++..+|+|++|+.+|++++ .
T Consensus 12 ~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~ 91 (159)
T 2hr2_A 12 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG 91 (159)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 37899999999999999999999999999999 444 99999999999999999999999999 8
Q ss_pred --ccccCCcH----HHHHHHHHHHHHHHHH
Q 035535 118 --DAQASGSL----ETVNGFLEKSKKLEYQ 141 (518)
Q Consensus 118 --~p~~~~~~----~~l~~~l~~~~~~~~~ 141 (518)
+|+++..+ ......+..+++.++.
T Consensus 92 e~~pd~~~A~~~~~~~rG~aL~~lgr~eEA 121 (159)
T 2hr2_A 92 ELNQDEGKLWISAVYSRALALDGLGRGAEA 121 (159)
T ss_dssp CTTSTHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cCCCchHHHHHHHHHhHHHHHHHCCCHHHH
Confidence 88777766 6666777777766654
No 153
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.78 E-value=2.3e-08 Score=83.86 Aligned_cols=74 Identities=8% Similarity=-0.015 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|+++++++|+++. +++++|.++..+|++++|+..++++
T Consensus 26 ~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~l~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 26 LAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQA------------------LRVFYAMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHH
Q 035535 82 LKIESSHFKALL 93 (518)
Q Consensus 82 l~l~p~~~ka~~ 93 (518)
++.+|+++....
T Consensus 88 l~~~p~~~~~~~ 99 (117)
T 3k9i_A 88 IAETSDDETIQS 99 (117)
T ss_dssp HHHHCCCHHHHH
T ss_pred HHhCCCcHHHHH
Confidence 999999987653
No 154
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Probab=98.77 E-value=8.5e-09 Score=107.81 Aligned_cols=67 Identities=22% Similarity=0.238 Sum_probs=51.8
Q ss_pred ceeEeecccccccCCCCCCc---eEEee--------CCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEee
Q 035535 308 YGLGLWALASFINHSCSPNA---RRVHV--------GDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCK 376 (518)
Q Consensus 308 ~~~gl~~~~s~~NHsC~PN~---~~~~~--------~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~ 376 (518)
.+.+|.|.+.++||+|.||. .+.+. ++.++++|.++|++||||++||++.. + ..+|+..|||.+.
T Consensus 182 ~~~~LvP~~D~~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~l~a~~~i~~Geei~~sYG~~~-~---N~~LL~~YGFv~~ 257 (440)
T 2h21_A 182 ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNK-S---NAELALDYGFIEP 257 (440)
T ss_dssp -CCBCCSSTTSCEECTTCCCCCCEEEC----------CEEEEEESSCBCTTSBCEECSCTTC-C---HHHHHHHSSCCCS
T ss_pred CceEEeechHhhcCCCCcccccceeeecCcccccCCCceEEEEECCCCCCCCEEEEeCCCCC-C---HHHHHHhCCCCcC
Confidence 35789999999999999874 33332 34799999999999999999999752 1 2357789999876
Q ss_pred cC
Q 035535 377 CK 378 (518)
Q Consensus 377 C~ 378 (518)
-.
T Consensus 258 ~n 259 (440)
T 2h21_A 258 NE 259 (440)
T ss_dssp CG
T ss_pred CC
Confidence 54
No 155
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=98.77 E-value=2.6e-08 Score=104.27 Aligned_cols=100 Identities=12% Similarity=0.101 Sum_probs=62.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..++++++.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~ 367 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELDPENIF------------------PYIQLACLAYRENKFDDCETLFSEAKRK 367 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCSH------------------HHHHHHHHTTTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4455566666666666666666666666655544 5666666666666666666666666666
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+|+++.+++.+|.++..+|++++|+..|++++ ..|.++
T Consensus 368 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 406 (514)
T 2gw1_A 368 FPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD 406 (514)
T ss_dssp STTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS
T ss_pred cccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc
Confidence 66666666666666666666666666666666 455443
No 156
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.77 E-value=4.2e-08 Score=97.06 Aligned_cols=106 Identities=14% Similarity=0.185 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+.+.|..+.. |+|++|+..|++|+.+.|.... ......++.|+|.++.++|+|++|+..++++++
T Consensus 117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~------------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 183 (307)
T 2ifu_A 117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEER------------LRQAAELIGKASRLLVRQQKFDEAAASLQKEKS 183 (307)
T ss_dssp HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCC------------hhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445566666666 6666666666666666654321 001123677777777777777777777777777
Q ss_pred cCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHHhccccC
Q 035535 84 IESSH------FKALLCKGKILLSLNRYSMALDCFKETLVDAQAS 122 (518)
Q Consensus 84 l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~ 122 (518)
+.|.+ ..+++.+|.+++.+|++++|+.+|++++..|...
T Consensus 184 ~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~p~~~ 228 (307)
T 2ifu_A 184 MYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESYSIPGFS 228 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTST
T ss_pred HHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhCCCCCC
Confidence 65433 2366777777777777777777777777444443
No 157
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.77 E-value=2e-08 Score=89.38 Aligned_cols=80 Identities=14% Similarity=0.049 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+...|..++..|+|++|+..|++++.++|++.. +|+++|.++..+|++++|+..++++
T Consensus 44 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 44 NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSK------------------AWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHccCHHHHHHHHHHH
Confidence 3567889999999999999999999999999999876 9999999999999999999999999
Q ss_pred HhcCCCchHHHHHHHHHH
Q 035535 82 LKIESSHFKALLCKGKIL 99 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al 99 (518)
++++|++..+|+.++.+.
T Consensus 106 l~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 106 IEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHSSSCCHHHHHHHHH
T ss_pred HHhCCCchHHHHHHHHHH
Confidence 999999999888776543
No 158
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.76 E-value=3.4e-08 Score=80.86 Aligned_cols=66 Identities=14% Similarity=0.186 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++.++|.+++..|+|++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++ ..|+++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~ 72 (111)
T 2l6j_A 6 KQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAE 72 (111)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcc
Confidence 899999999999999999999999999999999999999999999999999999999999 777653
No 159
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.76 E-value=3.7e-08 Score=77.60 Aligned_cols=72 Identities=19% Similarity=0.356 Sum_probs=65.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETV 128 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l 128 (518)
++.++|.++...|++++|+..++++++++|+++.+++.+|.++..+|++++|+..|++++ ..|+++.....+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l 83 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNL 83 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999 777655443333
No 160
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.76 E-value=7.2e-08 Score=97.98 Aligned_cols=105 Identities=17% Similarity=0.120 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+|+.+.+.... ......++.|+|.++..+|++++|+..+++|+
T Consensus 182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 249 (378)
T 3q15_A 182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN------------DRFIAISLLNIANSYDRSGDDQMAVEHFQKAA 249 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 456778999999999999999999999998765432 11234489999999999999999999999999
Q ss_pred h-----cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 83 K-----IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~-----l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+ .+|..+.+++.+|.++..+|++++|+..|++++ ..+
T Consensus 250 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 292 (378)
T 3q15_A 250 KVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHIT 292 (378)
T ss_dssp HHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 9 889899999999999999999999999999999 543
No 161
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.76 E-value=4.5e-08 Score=96.87 Aligned_cols=106 Identities=12% Similarity=0.108 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+.+.|+.+...|+|++|+..|.+|+.+.+.... ......++.|+|.+|.. |+|++|+..+++|++
T Consensus 77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~------------~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~ 143 (307)
T 2ifu_A 77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGT------------PDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAA 143 (307)
T ss_dssp HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTC------------HHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHH
Confidence 45566667777777777777777777776544322 01123378888888888 888888888888888
Q ss_pred cCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 84 IESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 84 l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+.|.. ..++..+|.+|..+|+|++|+.+|++++ ..|.+.
T Consensus 144 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 189 (307)
T 2ifu_A 144 VFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME 189 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence 86543 5678888888888888888888888888 555444
No 162
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.75 E-value=4.9e-08 Score=96.47 Aligned_cols=89 Identities=12% Similarity=0.042 Sum_probs=57.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHH-HhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 10 ATELLLREEWKESVQVYTQFID-LCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
|+.....+++++|+..|++|+. +.|++.. +|.++|..+.++|++++|...++++++++|.+
T Consensus 71 g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~------------------~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~ 132 (308)
T 2ond_A 71 GDMNNAKLFSDEAANIYERAISTLLKKNML------------------LYFAYADYEESRMKYEKVHSIYNRLLAIEDID 132 (308)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTTTTTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSC
T ss_pred cchhhcccchHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHhccccC
Confidence 3333445666666666666666 4665544 66666666666666666666666666666666
Q ss_pred hH-HHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 89 FK-ALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 89 ~k-a~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+. +|..+|.++...|++++|+..|++++
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~ 161 (308)
T 2ond_A 133 PTLVYIQYMKFARRAEGIKSGRMIFKKAR 161 (308)
T ss_dssp THHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 65 66666666666666666666666666
No 163
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.75 E-value=8.2e-08 Score=97.08 Aligned_cols=106 Identities=18% Similarity=0.255 Sum_probs=92.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|++++...|.++. ....++.++|.++..+|+|++|+..+++++
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~--------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 74 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLK--------------TLSAIYSQLGNAYFYLHDYAKALEYHHHDL 74 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHH--------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHH--------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 557889999999999999999999999999877542 123389999999999999999999999999
Q ss_pred hc------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KI------ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.+ +|....+++.+|.++..+|++++|+..|++++ ..|...
T Consensus 75 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 121 (406)
T 3sf4_A 75 TLARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELN 121 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc
Confidence 87 45668899999999999999999999999999 665443
No 164
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=98.75 E-value=6.5e-08 Score=98.32 Aligned_cols=105 Identities=14% Similarity=0.116 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|++++|+..|.+|+.+.+..... ....+.++.++|.++..+|+|++|+..+++|
T Consensus 142 ~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 210 (383)
T 3ulq_A 142 KAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY-----------NIRLLQCHSLFATNFLDLKQYEDAISHFQKA 210 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc-----------hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 35677889999999999999999999999988765420 1122348999999999999999999999999
Q ss_pred HhcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 82 LKIESSH------FKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 82 l~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+++.|.. ..+++.+|.+|..+|++++|+.+|++++.
T Consensus 211 l~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~ 252 (383)
T 3ulq_A 211 YSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIA 252 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 9885433 36899999999999999999999999993
No 165
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.74 E-value=8.5e-08 Score=83.09 Aligned_cols=101 Identities=13% Similarity=0.163 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++..|+|++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..++++++
T Consensus 50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 117 (164)
T 3ro3_A 50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD------------RAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 117 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC------------cHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 46778999999999999999999999999876533 112234899999999999999999999999998
Q ss_pred cCC------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IES------SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~p------~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+.+ ....+++.+|.++..+|++++|++.+++++
T Consensus 118 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 156 (164)
T 3ro3_A 118 IAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 156 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 732 236789999999999999999999999998
No 166
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.73 E-value=6.1e-08 Score=94.17 Aligned_cols=104 Identities=16% Similarity=0.182 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++.+....... ..+ ....++.++|.++..+|++++|+..+++++
T Consensus 111 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~--~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 111 AATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK--DHP--------DVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT--TCH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCC--CCh--------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999986322000 000 112389999999999999999999999999
Q ss_pred hc--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++ +|....+++.+|.++..+|++++|+..|++++
T Consensus 181 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 222 (311)
T 3nf1_A 181 EIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEIL 222 (311)
T ss_dssp HHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 98 78888999999999999999999999999999
No 167
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.73 E-value=2.5e-08 Score=88.46 Aligned_cols=70 Identities=16% Similarity=0.138 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhcH----------HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 035535 2 LMQQLRSKATELLLREEW----------KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-- 69 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~----------~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-- 69 (518)
+++.|.+.|+.+...+++ ++|+..|++||+++|+... +|+|+|.+|..+|
T Consensus 35 ~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~------------------A~~~LG~ay~~lg~l 96 (158)
T 1zu2_A 35 DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDE------------------AVWCIGNAYTSFAFL 96 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHH------------------HHHHHHHHHHHhccc
Confidence 578899999999998875 5999999999999999887 9999999999985
Q ss_pred ---------CHHHHHHHHHHHHhcCCCch
Q 035535 70 ---------DFDNALRDCEQALKIESSHF 89 (518)
Q Consensus 70 ---------~~~~Al~~~~~al~l~p~~~ 89 (518)
+|++|++.+++|++++|++.
T Consensus 97 ~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 97 TPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred CcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 89999999999999999874
No 168
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.73 E-value=4.2e-08 Score=79.99 Aligned_cols=69 Identities=12% Similarity=0.160 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|+++++++|+++. +|+++|.++..+|++++|+..++++
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVG------------------TYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4677899999999999999999999999999999877 9999999999999999999999999
Q ss_pred HhcCCCc
Q 035535 82 LKIESSH 88 (518)
Q Consensus 82 l~l~p~~ 88 (518)
+++.|.+
T Consensus 68 l~l~~~~ 74 (100)
T 3ma5_A 68 IEVAREE 74 (100)
T ss_dssp HHHHHHH
T ss_pred HhhhhcC
Confidence 9997754
No 169
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.73 E-value=6.7e-08 Score=104.27 Aligned_cols=115 Identities=12% Similarity=0.106 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHhhhc----------HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc--
Q 035535 2 LMQQLRSKATELLLREE----------WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-- 69 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~----------~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-- 69 (518)
+...|..+|..+...|+ +++|+..|.+++..+|.+.. +|++|+-++.+++
T Consensus 62 ~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~------------------aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 62 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------------------TWHHRCWLLSRLPEP 123 (567)
T ss_dssp CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHTCSSC
T ss_pred hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcccc
Confidence 46789999999999988 99999999999999999877 9999999999999
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
++++|++.+++++++||.+..||..++.++..+| .+++|++++.+++ .+|.+...+.....++..
T Consensus 124 ~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~ 190 (567)
T 1dce_A 124 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQ 190 (567)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHh
Confidence 7799999999999999999999999999999999 9999999999999 888776665555555544
No 170
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=98.72 E-value=6e-08 Score=94.25 Aligned_cols=104 Identities=14% Similarity=0.194 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++.+.......+ .+ ....++.++|.++..+|++++|+..+++++
T Consensus 69 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 138 (311)
T 3nf1_A 69 ATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD--HP--------AVAATLNNLAVLYGKRGKYKEAEPLCKRAL 138 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT--CH--------HHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC--Ch--------HHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 45678899999999999999999999999863321100 00 112389999999999999999999999999
Q ss_pred hcC--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIE--------SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++. |....+++.+|.++..+|++++|++.|++++
T Consensus 139 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 180 (311)
T 3nf1_A 139 EIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRAL 180 (311)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 873 6778899999999999999999999999999
No 171
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.71 E-value=3.8e-08 Score=100.49 Aligned_cols=91 Identities=18% Similarity=0.202 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.++|..+++.|+|++|+..|++||+++|+++. +++++|.+|..+|+|++|+.++++|+
T Consensus 273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------a~~~lg~~~~~~g~~~eA~~~l~~Al 334 (370)
T 1ihg_A 273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTK------------------ALYRRAQGWQGLKEYDQALADLKKAQ 334 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHH------------------HHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 467888999999999999999999999999998876 99999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDC 111 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~ 111 (518)
+++|++..++..++.++..++++++|.+.
T Consensus 335 ~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 335 EIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp HHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999988754
No 172
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.69 E-value=1.6e-07 Score=90.49 Aligned_cols=109 Identities=9% Similarity=0.082 Sum_probs=91.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRD 77 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~ 77 (518)
++..+...|..++..|++++|+..|+++++ |+++. +++++|.++.. .+++++|+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~------------------a~~~lg~~~~~g~~~~~~~~~A~~~ 64 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENS------------------GCFNLGVLYYQGQGVEKNLKKAASF 64 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHH------------------HHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHcCCCcCCCHHHHHHH
Confidence 467888999999999999999999999998 44444 89999999999 9999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535 78 CEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFLE 133 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~ 133 (518)
++++++++ ++.+++.+|.+|.. .+++++|+..|++++.. +++.....+..++.
T Consensus 65 ~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~-~~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 65 YAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL-KYAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc-CCccHHHHHHHHHH
Confidence 99999986 78999999999999 99999999999999933 23333344444443
No 173
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.67 E-value=1.1e-07 Score=76.78 Aligned_cols=79 Identities=23% Similarity=0.144 Sum_probs=69.8
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 57 ALSNRAEARSRLRD---FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 57 ~~~nra~a~~~lg~---~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
++..+|.+++..++ .++|...+++|+++||+++++++.+|.+++..|+|++|+..|++++ .+|. ......+...+
T Consensus 8 ~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~i~~~I 86 (93)
T 3bee_A 8 QLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVTIIESI 86 (93)
T ss_dssp HHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHHHHHHH
Confidence 89999999987666 7999999999999999999999999999999999999999999999 7887 55666777766
Q ss_pred HHHH
Q 035535 133 EKSK 136 (518)
Q Consensus 133 ~~~~ 136 (518)
.+.+
T Consensus 87 ~~A~ 90 (93)
T 3bee_A 87 NKAK 90 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6544
No 174
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=98.67 E-value=6.8e-08 Score=77.85 Aligned_cols=67 Identities=18% Similarity=0.246 Sum_probs=62.3
Q ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH-HHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 58 LSNRAEARSRLRDFDNALRDCEQALKIESSHFK-ALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 58 ~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k-a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.+++|.++++.|+|++|+..++++++.+|+++. +++.+|.++..+|++++|+..|++++ ..|+++..
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~ 71 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPAL 71 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHH
Confidence 457899999999999999999999999999999 99999999999999999999999999 78766543
No 175
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.66 E-value=8.9e-08 Score=93.89 Aligned_cols=115 Identities=11% Similarity=-0.012 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhh----------hhHHHHHHHHH------HHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQ----------EASQLSKLKKS------LCLALSNRAEAR 65 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~----------~~~~~~~~~~~------l~~~~~nra~a~ 65 (518)
+...+...|..+...|++++|+..|++++..+|+....... ..+....+.+. ...+++++|.++
T Consensus 150 ~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l 229 (287)
T 3qou_A 150 NGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQL 229 (287)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 35667778888888888888887777776666532110000 00000001110 123899999999
Q ss_pred HhccCHHHHHHHHHHHHhcCCCc--hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 66 SRLRDFDNALRDCEQALKIESSH--FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 66 ~~lg~~~~Al~~~~~al~l~p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
...|++++|+..+.++++.+|++ ..++.++|.++..+|+.++|...|++++
T Consensus 230 ~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 230 HQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 99999999999999999999998 8999999999999999999999999988
No 176
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=98.66 E-value=1.1e-07 Score=93.92 Aligned_cols=86 Identities=10% Similarity=0.089 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535 20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKIL 99 (518)
Q Consensus 20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al 99 (518)
++|+..|++++.+.|.++. .+|.+++.++.+.|++++|+..+++|++.+|.+..+|...+...
T Consensus 116 ~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~ 178 (308)
T 2ond_A 116 EKVHSIYNRLLAIEDIDPT-----------------LVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALME 178 (308)
T ss_dssp HHHHHHHHHHHTSSSSCTH-----------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccCcc-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 4566667777766665432 15777777777777777777777777777777766666555443
Q ss_pred Hh-ccChHHHHHHHHHHH-hccccC
Q 035535 100 LS-LNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 100 ~~-lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+. +|++++|+..|++++ ..|+++
T Consensus 179 ~~~~~~~~~A~~~~~~al~~~p~~~ 203 (308)
T 2ond_A 179 YYCSKDKSVAFKIFELGLKKYGDIP 203 (308)
T ss_dssp HHTSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCcH
Confidence 32 577777777777777 555443
No 177
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=98.66 E-value=2.9e-07 Score=93.01 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=92.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+++++
T Consensus 187 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 254 (406)
T 3sf4_A 187 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 346788999999999999999999999999887543 11233489999999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
++.|.. ..+++.+|.++..+|++++|+..|++++ ..+..
T Consensus 255 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 300 (406)
T 3sf4_A 255 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 300 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhc
Confidence 987765 7799999999999999999999999999 55443
No 178
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.66 E-value=2.8e-07 Score=89.85 Aligned_cols=107 Identities=17% Similarity=0.157 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+++++
T Consensus 183 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 183 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGD------------KAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCC------------hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 346778899999999999999999999999877543 11223489999999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
++.|.. ..+++.+|.++..+|++++|+..|++++ ..+..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~ 296 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQEL 296 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhc
Confidence 987655 7789999999999999999999999999 55443
No 179
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=98.66 E-value=2.2e-07 Score=94.63 Aligned_cols=107 Identities=11% Similarity=0.166 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++.+.+.... ......++.++|.++..+|++++|+..+++++
T Consensus 223 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 290 (411)
T 4a1s_A 223 GRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD------------RAAERRANSNLGNSHIFLGQFEDAAEHYKRTL 290 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC------------HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC------------cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 346778999999999999999999999999887543 11223489999999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
++.|.. ..+++.+|.++..+|++++|+.+|++++ ..+..
T Consensus 291 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 291 ALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 987744 7889999999999999999999999999 55443
No 180
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.65 E-value=9.7e-08 Score=81.40 Aligned_cols=82 Identities=12% Similarity=0.038 Sum_probs=72.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
.++++|.+++..|+|++|+..++++++++|+++.+++.+|.++..+|+|++|+..|++++ ..|+++.....+...+...
T Consensus 11 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~ 90 (137)
T 3q49_B 11 ELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQLEM 90 (137)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999999999999999 7877665555555555544
Q ss_pred HHH
Q 035535 136 KKL 138 (518)
Q Consensus 136 ~~~ 138 (518)
++.
T Consensus 91 ~~~ 93 (137)
T 3q49_B 91 ESY 93 (137)
T ss_dssp TCH
T ss_pred hhH
Confidence 443
No 181
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.65 E-value=1.6e-07 Score=77.72 Aligned_cols=83 Identities=16% Similarity=0.242 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|++++|+..|.+++...|.+.. ++.++|.++..+|++++|+..+++++
T Consensus 43 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~la~~~~~~~~~~~A~~~~~~~~ 104 (125)
T 1na0_A 43 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAE------------------AWYNLGNAYYKQGDYDEAIEYYQKAL 104 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHH------------------HHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 456788999999999999999999999999888765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhcc
Q 035535 83 KIESSHFKALLCKGKILLSLN 103 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg 103 (518)
+++|+++.++..+|.++...|
T Consensus 105 ~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 105 ELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHCTTCHHHHHHHHHHHHHHC
T ss_pred HhCCCcHHHHHHHHHHHHhcc
Confidence 999999999999999987654
No 182
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.64 E-value=1.9e-07 Score=76.53 Aligned_cols=79 Identities=16% Similarity=0.144 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|+|++|+..|.+++...|.++. ++.++|.++..+|++++|+..+++++
T Consensus 38 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~~~ 99 (118)
T 1elw_A 38 HVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGK------------------GYSRKAAALEFLNRFEEAKRTYEEGL 99 (118)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 466788999999999999999999999999998765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKIL 99 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al 99 (518)
+++|+++.++..++.+.
T Consensus 100 ~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 100 KHEANNPQLKEGLQNME 116 (118)
T ss_dssp TTCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHhh
Confidence 99999999999888775
No 183
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.63 E-value=3.1e-08 Score=80.68 Aligned_cols=64 Identities=23% Similarity=0.394 Sum_probs=61.6
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
++.++|.++...|++++|+..++++++++|.+..+++.+|.++..+|++++|+..|++++ ..|.
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~ 72 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIED 72 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCC
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc
Confidence 789999999999999999999999999999999999999999999999999999999999 6665
No 184
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.63 E-value=2e-07 Score=92.51 Aligned_cols=115 Identities=7% Similarity=-0.068 Sum_probs=101.0
Q ss_pred HHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHH----Hhc---cCHH
Q 035535 2 LMQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEAR----SRL---RDFD 72 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~----~~l---g~~~ 72 (518)
+...|..+|..+...| ++++|+..+.++|..+|.+.. +|.+|+.++ ..+ ++++
T Consensus 66 ~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~------------------aW~~R~~iL~~~~~~l~~~~~~~ 127 (306)
T 3dra_A 66 HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQ------------------IWNYRQLIIGQIMELNNNDFDPY 127 (306)
T ss_dssp CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCH------------------HHHHHHHHHHHHHHHTTTCCCTH
T ss_pred HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHH------------------HHHHHHHHHHHHHHhccccCCHH
Confidence 4577899999999999 999999999999999999987 999999999 777 7899
Q ss_pred HHHHHHHHHHhcCCCchHHHHHHHHHHHhccChH--HHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 73 NALRDCEQALKIESSHFKALLCKGKILLSLNRYS--MALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 73 ~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~--~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
+++..++++++.+|.+..+|+.++.++..++.++ ++++.+.+++ .+|.|-..+.....++..
T Consensus 128 ~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~ 192 (306)
T 3dra_A 128 REFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFS 192 (306)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 9999999999 777665544433344433
No 185
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.62 E-value=1.1e-07 Score=102.45 Aligned_cols=117 Identities=10% Similarity=0.137 Sum_probs=105.4
Q ss_pred HHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHH
Q 035535 2 LMQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDC 78 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~ 78 (518)
....|..+|..+.+.+ +|++|++.|.++++.+|.+.. +|.+|+.+..++| .++++++++
T Consensus 106 ~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~------------------aW~~R~~~l~~l~~~~~~el~~~ 167 (567)
T 1dce_A 106 SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------------------CWDYRRFVAAQAAVAPAEELAFT 167 (567)
T ss_dssp CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTCCCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhcccccc------------------HHHHHHHHHHHcCCChHHHHHHH
Confidence 3568899999999999 789999999999999999977 9999999999999 999999999
Q ss_pred HHHHhcCCCchHHHHHHHHHHHhc--------------cChHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 79 EQALKIESSHFKALLCKGKILLSL--------------NRYSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 79 ~~al~l~p~~~ka~~~~g~al~~l--------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
+++++.+|.+..||+.+|.++..+ +.+++|++++.+|+ .+|++...+..+.-++.+..
T Consensus 168 ~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~ 240 (567)
T 1dce_A 168 DSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAE 240 (567)
T ss_dssp HTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCC
T ss_pred HHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCC
Confidence 999999999999999999999986 67899999999999 89988877766666665443
No 186
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.62 E-value=4.2e-07 Score=96.05 Aligned_cols=104 Identities=12% Similarity=0.078 Sum_probs=84.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+.+++..+..+|+|++|+..|.++|++......+. .| .....+.|+|.+|..+|+|++|+..+++++
T Consensus 309 a~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~--Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL 378 (490)
T 3n71_A 309 SKDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADT--NL--------YVLRLLSIASEVLSYLQAYEEASHYARRMV 378 (490)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTT--SH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCC--CH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 34455667778889999999999999999864433211 11 123489999999999999999999999999
Q ss_pred hc-----C---CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KI-----E---SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l-----~---p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++ . |+-..++.++|.+|..+|+|++|+..|++|+
T Consensus 379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al 420 (490)
T 3n71_A 379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAY 420 (490)
T ss_dssp HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 76 3 4456689999999999999999999999999
No 187
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.61 E-value=1.3e-08 Score=99.65 Aligned_cols=103 Identities=11% Similarity=0.095 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
++..+.+.|..+++.|+|++|+..|++++.++|++.. +++++|.++..+|++++|+.+++++
T Consensus 37 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~~~~~g~~~~A~~~~~~a 98 (281)
T 2c2l_A 37 VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVK------------------AHFFLGQCQLEMESYDEAIANLQRA 98 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 9999999999999999999999999
Q ss_pred HhcCCCch-------HHHHHHHH----------------------HHHhccChHHHHHHHHHHH-hccccC
Q 035535 82 LKIESSHF-------KALLCKGK----------------------ILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 82 l~l~p~~~-------ka~~~~g~----------------------al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
++++|++. ...++++. ..+..|++++|++.|++++ ..|++.
T Consensus 99 l~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~~~~~~~A~~~~~~al~~~p~~~ 169 (281)
T 2c2l_A 99 YSLAKEQRLNFGDDIPSALRIAKKKRWNSIEERRIHQESELHSYLTRLIAAERERELEECQRNHEGHEDDG 169 (281)
T ss_dssp HHHHHHTTCCCCSHHHHHHHHHHHHHHHHHHHTCCCCCCHHHHHHHHHHHHHHHHHHTTTSGGGTTTSCHH
T ss_pred HHhCccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHhhhccccchh
Confidence 99998652 11111110 1123688999999999999 666443
No 188
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.61 E-value=2.5e-07 Score=76.28 Aligned_cols=83 Identities=13% Similarity=0.031 Sum_probs=69.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++.....|..++..|+|..|+..|.+|+...+.....+...+ .++.++|.|++++|++++|+..+++++
T Consensus 5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~-----------~i~~~L~~~~~~~g~~~~A~~~~~~al 73 (104)
T 2v5f_A 5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKV-----------SVLDYLSYAVYQQGDLDKALLLTKKLL 73 (104)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHH-----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 567889999999999999999999999998754321111111 288999999999999999999999999
Q ss_pred hcCCCchHHHHHHH
Q 035535 83 KIESSHFKALLCKG 96 (518)
Q Consensus 83 ~l~p~~~ka~~~~g 96 (518)
+++|++..++.+++
T Consensus 74 ~l~P~~~~~~~n~~ 87 (104)
T 2v5f_A 74 ELDPEHQRANGNLK 87 (104)
T ss_dssp HHCTTCHHHHHHHH
T ss_pred hcCCCCHHHHhhHH
Confidence 99999999887776
No 189
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.61 E-value=1.4e-07 Score=93.63 Aligned_cols=116 Identities=11% Similarity=0.060 Sum_probs=102.4
Q ss_pred HHHHHHHHHHH----Hhh---hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHH--H
Q 035535 3 MQQLRSKATEL----LLR---EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFD--N 73 (518)
Q Consensus 3 a~~l~~~Gn~~----~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~--~ 73 (518)
...|..++..+ ... +++++++..+.+++..+|.+.. +|.+|+.+..+++.++ +
T Consensus 103 y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~------------------aW~~R~~vl~~l~~~~~~~ 164 (306)
T 3dra_A 103 YQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHH------------------VWSYRKWLVDTFDLHNDAK 164 (306)
T ss_dssp CHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCTTCHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhcccChHH
Confidence 45677788887 555 7899999999999999999977 9999999999999999 9
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHhccC------hHHHHHHHHHHH-hccccCCcHHHHHHHHHHHH
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKILLSLNR------YSMALDCFKETL-VDAQASGSLETVNGFLEKSK 136 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al~~lg~------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~~ 136 (518)
+++.++++++.||.|..||..++.++..+++ ++++++++++++ .+|+|...+.....++.+.+
T Consensus 165 EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~ 234 (306)
T 3dra_A 165 ELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFD 234 (306)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcC
Confidence 9999999999999999999999999999998 999999999999 88877766666666665433
No 190
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.58 E-value=3.9e-07 Score=92.50 Aligned_cols=104 Identities=17% Similarity=0.074 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|++.+|+..|.+|+.+.+..... ....+.++.++|.++..+|+|++|++.+++|+
T Consensus 141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al 209 (378)
T 3q15_A 141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLY-----------SIRTIQSLFVIAGNYDDFKHYDKALPHLEAAL 209 (378)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCc-----------hhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 5567788999999999999999999999988764320 01234489999999999999999999999999
Q ss_pred hcCC------CchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 83 KIES------SHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 83 ~l~p------~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
++.+ ....+++++|.++..+|++++|+.+|++++.
T Consensus 210 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~ 250 (378)
T 3q15_A 210 ELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAK 250 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8732 2356899999999999999999999999993
No 191
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.57 E-value=3.8e-07 Score=91.20 Aligned_cols=112 Identities=11% Similarity=0.129 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHH
Q 035535 3 MQQLRSKATELLLRE--EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCE 79 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g--~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~ 79 (518)
...|..++..+...+ +|++++..+.++++.+|.+.. +|.+|+.+...+|. ++++++.++
T Consensus 108 y~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~------------------AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 108 YGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH------------------CWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhCcCHHHHHHHHH
Confidence 345666666666655 366677777777776666655 67777776666666 466777777
Q ss_pred HHHhcCCCchHHHHHHHHHHHhc--------------cChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 80 QALKIESSHFKALLCKGKILLSL--------------NRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~l--------------g~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
++++.+|.|..||..++.++..+ +.++++++++.+++ .+|+|...+.-+.-++
T Consensus 170 ~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll 237 (331)
T 3dss_A 170 SLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLL 237 (331)
T ss_dssp HHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 77777777777777776666666 45666777777776 6665554443333333
No 192
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.57 E-value=1.5e-07 Score=91.75 Aligned_cols=100 Identities=14% Similarity=-0.031 Sum_probs=78.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.....|..+++.|+|++|+..|++++...+.. .-..+++++|.++..+|++++|+..+++++..
T Consensus 137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~----------------~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g 200 (282)
T 4f3v_A 137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKF----------------LAGAAGVAHGVAAANLALFTEAERRLTEANDS 200 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHH----------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcc----------------cHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcC
Confidence 45667778888888888888887665432110 00128899999999999999999999999865
Q ss_pred C--CC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 85 E--SS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 85 ~--p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
+ |. .+.+++++|.++..+|+.++|...|++++ ..|+
T Consensus 201 ~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 201 PAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp TTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 4 66 67799999999999999999999999999 6663
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.56 E-value=7.9e-07 Score=88.91 Aligned_cols=116 Identities=12% Similarity=0.097 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhhc----------HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-
Q 035535 2 LMQQLRSKATELLLREE----------WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD- 70 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~----------~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~- 70 (518)
+...|..++..+...+. +++++..+..+|..+|.+.. +|.+|+.++.++++
T Consensus 63 ~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~------------------aW~hR~wlL~~l~~~ 124 (331)
T 3dss_A 63 FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYG------------------TWHHRCWLLSRLPEP 124 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHCSSC
T ss_pred hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHhccCcc
Confidence 45678888888877665 79999999999999999877 99999999999994
Q ss_pred -HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccC-hHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 71 -FDNALRDCEQALKIESSHFKALLCKGKILLSLNR-YSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 71 -~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~-~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
+++++..+++++++||.|..||..++.++..+|. ++++++++.+++ .+|.|...+.....++...
T Consensus 125 ~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l 192 (331)
T 3dss_A 125 NWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL 192 (331)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 699999999999 8887776666666666554
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.56 E-value=2.1e-07 Score=77.38 Aligned_cols=70 Identities=13% Similarity=0.004 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.+..+...|..++..|+|++|+..|.+++.++|.+.. +++++|.++..+|++++|+..++++
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~------------------~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSV------------------AWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHH------------------HHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999999998876 8999999999999999999999999
Q ss_pred HhcCCCch
Q 035535 82 LKIESSHF 89 (518)
Q Consensus 82 l~l~p~~~ 89 (518)
++++|.+.
T Consensus 80 l~~~~~~~ 87 (115)
T 2kat_A 80 LAAAQSRG 87 (115)
T ss_dssp HHHHHHHT
T ss_pred HHhccccc
Confidence 99988543
No 195
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.56 E-value=6.8e-07 Score=81.27 Aligned_cols=103 Identities=12% Similarity=0.078 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..+...|++++|+..|.+++.+....... ......++.++|.++..+|++++|+..+++++
T Consensus 66 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~-----------~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 134 (203)
T 3gw4_A 66 HRALHQVGMVERMAGNWDAARRCFLEERELLASLPED-----------PLAASANAYEVATVALHFGDLAGARQEYEKSL 134 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC-----------HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCcc-----------HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 4567889999999999999999999999996543310 01123489999999999999999999999999
Q ss_pred hcCCC------chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIESS------HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~------~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.+. ...++..+|.++..+|++++|++.|++++
T Consensus 135 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 174 (203)
T 3gw4_A 135 VYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRAR 174 (203)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 76321 23457899999999999999999999999
No 196
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.55 E-value=5.5e-07 Score=93.63 Aligned_cols=99 Identities=10% Similarity=0.112 Sum_probs=79.1
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI--- 84 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l--- 84 (518)
+.+...-..|+|++|+..|.++|++......+. .+ .....+.|+|.+|..+|+|++|+..+++++++
T Consensus 303 e~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~--Hp--------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~ 372 (433)
T 3qww_A 303 EEFRRAKHYKSPSELLEICELSQEKMSSVFEDS--NV--------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSK 372 (433)
T ss_dssp HHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTT--SH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhccCHHHHHHHHHHHHHHhhCccChh--ch--------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 334444456889999999999999754332211 11 12338999999999999999999999999976
Q ss_pred -----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 -----ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 -----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+|+-...++++|.+|..+|+|++|+..|++|+
T Consensus 373 ~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al 409 (433)
T 3qww_A 373 HYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAI 409 (433)
T ss_dssp HSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 34456789999999999999999999999999
No 197
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.54 E-value=3.8e-07 Score=89.24 Aligned_cols=101 Identities=15% Similarity=0.096 Sum_probs=82.1
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh---
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK--- 83 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~--- 83 (518)
...|..++..++|++|+..|.+|+.+.+..... .....++.++|.+|..+|+|++|+..+++|++
T Consensus 119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~------------~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~ 186 (293)
T 3u3w_A 119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDV------------YQNLYIENAIANIYAENGYLKKGIDLFEQILKQLE 186 (293)
T ss_dssp HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCT------------THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccCHHHHHHHHHHHHHHhcccccH------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 347888888889999999999999876543320 01223799999999999999999999999994
Q ss_pred ----cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 84 ----IESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 84 ----l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
..+....+++++|.+|..+|+|++|+..+++++ ..+
T Consensus 187 ~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~ 227 (293)
T 3u3w_A 187 ALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISC 227 (293)
T ss_dssp HSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 234456799999999999999999999999999 543
No 198
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.53 E-value=4e-07 Score=84.89 Aligned_cols=31 Identities=3% Similarity=-0.135 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDL 32 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~ 32 (518)
++..+...|..++..+++++|+..|++|++.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~ 47 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ 47 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc
Confidence 4567888899999999999999999998875
No 199
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=98.53 E-value=2.2e-07 Score=96.64 Aligned_cols=99 Identities=11% Similarity=0.098 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc--------------
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-------------- 68 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-------------- 68 (518)
...+...|..+...|++++|+..|.+|+...|+++. ++.++|.+|...
T Consensus 247 ~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~------------------~~~~lg~~y~~~~~~~~~~~~~~~~~ 308 (472)
T 4g1t_A 247 TDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAY------------------LHCQIGCCYRAKVFQVMNLRENGMYG 308 (472)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHH------------------HHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 456788999999999999999999999999999876 788888877543
Q ss_pred -----cCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 69 -----RDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 69 -----g~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+.+++|+..++++++++|.+..+++.+|.++..+|+|++|+.+|++++ ..|
T Consensus 309 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~ 365 (472)
T 4g1t_A 309 KRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKEL 365 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCC
T ss_pred HHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCC
Confidence 457889999999999999999999999999999999999999999999 554
No 200
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.52 E-value=1.8e-06 Score=84.44 Aligned_cols=102 Identities=11% Similarity=0.052 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+..++..++..|+|++|++.|.+++...+.... .......++++|.++...|++++|+..+++|+
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 142 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPE------------FQQFLQWQYYVAAYVLKKVDYEYCILELKKLL 142 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHH------------HHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChh------------HHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 456778899999999999999999999998765322 01122357789999999999999999999999
Q ss_pred hcCCCc------hHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 83 KIESSH------FKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 83 ~l~p~~------~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.+.. ..+++.+|.+|..+|+|++|+.+|++++
T Consensus 143 ~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal 182 (293)
T 2qfc_A 143 NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQIL 182 (293)
T ss_dssp TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 875433 6689999999999999999999999999
No 201
>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}
Probab=98.51 E-value=2.8e-07 Score=82.65 Aligned_cols=43 Identities=19% Similarity=0.254 Sum_probs=38.2
Q ss_pred cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCC
Q 035535 316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDML 358 (518)
Q Consensus 316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~ 358 (518)
..++||+|. +|+.....++++.++|+|||++||||++.|.+.+
T Consensus 102 mR~Vn~A~~~~eqNl~a~q~~~~I~~~a~RdI~pGeELlvwYg~~y 147 (170)
T 3ep0_A 102 MTYIKCARNEQEQNLEVVQIGTSIFYKAIEMIPPDQELLVWYGNSH 147 (170)
T ss_dssp GGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC--
T ss_pred eeeEEecCCcccCCeeeEEECCEEEEEECcCcCCCCEEEEeeCHHH
Confidence 578999997 8998888899999999999999999999999865
No 202
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=4.9e-07 Score=77.58 Aligned_cols=80 Identities=19% Similarity=0.175 Sum_probs=73.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...+...|..++..|+|++|+..|.+++...|.++. +++++|.++..+|++++|+..+++++
T Consensus 65 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~------------------~~~~~a~~~~~~~~~~~A~~~~~~al 126 (148)
T 2dba_A 65 AVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVK------------------ALYRRSQALEKLGRLDQAVLDLQRCV 126 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 567888999999999999999999999999998765 89999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILL 100 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~ 100 (518)
+++|++..++..++.+..
T Consensus 127 ~~~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 127 SLEPKNKVFQEALRNISG 144 (148)
T ss_dssp HHCSSCHHHHHHHHHHHC
T ss_pred HcCCCcHHHHHHHHHHHh
Confidence 999999999888777654
No 203
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.50 E-value=1e-06 Score=91.71 Aligned_cols=103 Identities=15% Similarity=0.166 Sum_probs=82.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+.+......+..+|+|++|+..|++++++......+ ..+ .....+.|+|.+|..+|+|++|+..+++++.
T Consensus 288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~--~h~--------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~ 357 (429)
T 3qwp_A 288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPD--INI--------YQLKVLDCAMDACINLGLLEEALFYGTRTME 357 (429)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCT--TSH--------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCc--cch--------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 445556667888999999999999999864332210 001 1233899999999999999999999999997
Q ss_pred c--------CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 I--------ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l--------~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+ +|.-...++++|.+|..+|+|++|+..|++|+
T Consensus 358 i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 358 PYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 6 34446689999999999999999999999999
No 204
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.50 E-value=1e-06 Score=84.80 Aligned_cols=94 Identities=12% Similarity=0.075 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535 2 LMQQLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN 73 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~ 73 (518)
.+..+...|..++. .+++++|+..|+++++.. ++. +++++|.++.. .+++++
T Consensus 37 ~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~------------------a~~~lg~~~~~g~~~~~~~~~ 96 (273)
T 1ouv_A 37 ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSN------------------GCHLLGNLYYSGQGVSQNTNK 96 (273)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHH------------------HHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHH------------------HHHHHHHHHhCCCCcccCHHH
Confidence 35677889999999 999999999999999874 333 89999999999 999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHh
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLV 117 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~ 117 (518)
|+..++++++.+ ++.+++.+|.+|.. .+++++|+.+|++++.
T Consensus 97 A~~~~~~a~~~~--~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~ 142 (273)
T 1ouv_A 97 ALQYYSKACDLK--YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACD 142 (273)
T ss_dssp HHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcC--CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHh
Confidence 999999999985 89999999999999 9999999999999993
No 205
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.49 E-value=8.1e-07 Score=74.67 Aligned_cols=83 Identities=6% Similarity=-0.027 Sum_probs=70.9
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|..++..|+|++|+..|.+++...|++.. . ..+++++|.++..+|++++|+..++++++
T Consensus 40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~----~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDK----A-----------AGGLLKLGLSQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTT----H-----------HHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcc----c-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888999999999999999999999999998732 0 01899999999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHh
Q 035535 84 IESSHFKALLCKGKILLS 101 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~ 101 (518)
.+|++..+...+..+-..
T Consensus 105 ~~p~~~~~~~a~~~l~~l 122 (129)
T 2xev_A 105 QYPGSDAARVAQERLQSI 122 (129)
T ss_dssp HSTTSHHHHHHHHHHHHH
T ss_pred HCCCChHHHHHHHHHHHH
Confidence 999998776655544433
No 206
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.45 E-value=5.6e-07 Score=83.92 Aligned_cols=110 Identities=13% Similarity=0.020 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535 2 LMQQLRSKATELLLRE----EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN 73 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g----~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~ 73 (518)
++..+...|..+.. + ++++|+..|++|++ +.++. +++++|.+|.. .+++++
T Consensus 49 ~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~------------------a~~~Lg~~y~~g~g~~~d~~~ 107 (212)
T 3rjv_A 49 DGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKS------------------GEIVLARVLVNRQAGATDVAH 107 (212)
T ss_dssp CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHH------------------HHHHHHHHHTCGGGSSCCHHH
T ss_pred CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHH------------------HHHHHHHHHHcCCCCccCHHH
Confidence 35677888998888 6 89999999999965 34444 89999999998 889999
Q ss_pred HHHHHHHHHhcCC--CchHHHHHHHHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535 74 ALRDCEQALKIES--SHFKALLCKGKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFL 132 (518)
Q Consensus 74 Al~~~~~al~l~p--~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l 132 (518)
|+..+++|++.+| .++.+++.+|.+|.. .+++++|+.+|++++..|.++.....+..++
T Consensus 108 A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~a~~~Lg~~y 172 (212)
T 3rjv_A 108 AITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLSRTGYAEYWAGMMF 172 (212)
T ss_dssp HHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTSCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHH
Confidence 9999999999998 569999999999999 8899999999999995565655444444444
No 207
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.44 E-value=8e-07 Score=74.13 Aligned_cols=90 Identities=9% Similarity=0.129 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+...|..++..|+|++|+..|.+++...|..... ......+++++|.++..+|++++|+..+++++
T Consensus 38 ~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 106 (131)
T 1elr_A 38 MTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRED-----------YRQIAKAYARIGNSYFKEEKYKDAIHFYNKSL 106 (131)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTC-----------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchh-----------HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4567889999999999999999999999999876320 00112389999999999999999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccC
Q 035535 83 KIESSHFKALLCKGKILLSLNR 104 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~ 104 (518)
+++| +...+..++.+...+++
T Consensus 107 ~~~~-~~~~~~~l~~~~~~~~~ 127 (131)
T 1elr_A 107 AEHR-TPDVLKKCQQAEKILKE 127 (131)
T ss_dssp HHCC-CHHHHHHHHHHHHHHHH
T ss_pred HhCC-CHHHHHHHHHHHHHHHH
Confidence 9999 68888888887766543
No 208
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.42 E-value=9.3e-07 Score=77.58 Aligned_cols=90 Identities=13% Similarity=0.047 Sum_probs=77.0
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc---CHHHHHHHHHHHHhcC-C-CchH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR---DFDNALRDCEQALKIE-S-SHFK 90 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg---~~~~Al~~~~~al~l~-p-~~~k 90 (518)
......+...|.+.+...+.+.. +.++.|.++.+.+ ++.+++..++.+++.+ | .+..
T Consensus 11 ~~~l~~~~~~y~~e~~~~~~~~~------------------~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd 72 (152)
T 1pc2_A 11 VEDLLKFEKKFQSEKAAGSVSKS------------------TQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD 72 (152)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCHH------------------HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCcHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH
Confidence 34567788888888876664443 8999999999988 6779999999999999 7 6799
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHH-hccccCC
Q 035535 91 ALLCKGKILLSLNRYSMALDCFKETL-VDAQASG 123 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~ 123 (518)
++|.+|.+++.+++|++|++++++++ ..|++.+
T Consensus 73 ~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~Q 106 (152)
T 1pc2_A 73 YVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQ 106 (152)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHH
Confidence 99999999999999999999999999 7775543
No 209
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=7.8e-07 Score=89.42 Aligned_cols=86 Identities=9% Similarity=0.116 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhcCCCchHHHHHHHH
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKIESSHFKALLCKGK 97 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l~p~~~ka~~~~g~ 97 (518)
.++|++.++++|.++|.+.. +|..|+.++..++ .+++++..++.++..+|.+..+|+.++.
T Consensus 70 se~AL~lt~~~L~~nP~~yt------------------aWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~w 131 (349)
T 3q7a_A 70 SERALELTEIIVRMNPAHYT------------------VWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLL 131 (349)
T ss_dssp SHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCchhHH------------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence 35666666666666666654 6666666666666 3666666666666666666666666666
Q ss_pred HHHhc-c-ChHHHHHHHHHHH-hccccC
Q 035535 98 ILLSL-N-RYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 98 al~~l-g-~~~~A~~~~~~al-~~p~~~ 122 (518)
++..+ + +++++++.+.+++ .+|.+.
T Consensus 132 lL~~l~~~~~~~EL~~~~k~L~~dpkNy 159 (349)
T 3q7a_A 132 LLDRISPQDPVSEIEYIHGSLLPDPKNY 159 (349)
T ss_dssp HHHHHCCSCCHHHHHHHHHHTSSCTTCH
T ss_pred HHHHhcCCChHHHHHHHHHHHHhCCCCH
Confidence 66665 5 6666666666666 554443
No 210
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.41 E-value=4.4e-07 Score=91.25 Aligned_cols=112 Identities=10% Similarity=0.040 Sum_probs=85.1
Q ss_pred HHHHHHHHHHhh-h-cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHH--------HH
Q 035535 5 QLRSKATELLLR-E-EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFD--------NA 74 (518)
Q Consensus 5 ~l~~~Gn~~~~~-g-~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~--------~A 74 (518)
.|..++..+... + +++++++.+.++|..+|.+.. +|.+|+-+..+++.++ ++
T Consensus 125 aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~------------------AW~~R~wvl~~l~~~~~~~~~~~~eE 186 (349)
T 3q7a_A 125 VWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYH------------------TWAYLHWLYSHFSTLGRISEAQWGSE 186 (349)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHH------------------HHHHHHHHHHHHHHTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhccccccchhhHHHH
Confidence 344444444443 3 444555555555555544443 8999999999999888 99
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHHHHhccC-------hHHHHHHHHHHH-hccccCCcHHHHHHHHHH
Q 035535 75 LRDCEQALKIESSHFKALLCKGKILLSLNR-------YSMALDCFKETL-VDAQASGSLETVNGFLEK 134 (518)
Q Consensus 75 l~~~~~al~l~p~~~ka~~~~g~al~~lg~-------~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~ 134 (518)
++.++++++.+|.|..||..++.++..+++ ++++++++++++ .+|+|...+..+..++.+
T Consensus 187 Le~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~ 254 (349)
T 3q7a_A 187 LDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGFLKH 254 (349)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHh
Confidence 999999999999999999999999999997 799999999999 888777666555555543
No 211
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.30 E-value=2.5e-06 Score=90.69 Aligned_cols=103 Identities=12% Similarity=0.080 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...|...|..+.+.|++++|...|++++.+.|.++. .+|.+.+.++.+.|++++|...+++|+
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----------------~~~~~~~~~~~~~~~~~~A~~~~~~Al 383 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPT-----------------LVYIQYMKFARRAEGIKSGRMIFKKAR 383 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCch-----------------HHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 445666777777777777777777777777665421 167777777777777777777777777
Q ss_pred hcCCCchHHHHHHHHH-HHhccChHHHHHHHHHHH-hccccC
Q 035535 83 KIESSHFKALLCKGKI-LLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~a-l~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
+..|.....+...+.. +...|++++|...|++++ ..|+++
T Consensus 384 ~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~ 425 (530)
T 2ooe_A 384 EDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP 425 (530)
T ss_dssp TCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred hccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence 7777666666655554 334777777777777777 555444
No 212
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.30 E-value=5.1e-06 Score=83.60 Aligned_cols=103 Identities=14% Similarity=0.068 Sum_probs=70.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|++++|+..|.+++.+.|.... ......++.++|.++...|++++|+..+++++++
T Consensus 55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~------------~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~ 122 (373)
T 1hz4_A 55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV------------WHYALWSLIQQSEILFAQGFLQTAWETQEKAFQL 122 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc------------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 4556677777777777777777777777665432 0111235777888888888888888888888776
Q ss_pred C--------CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 85 E--------SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 85 ~--------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
. |....++..+|.++...|++++|...+++++ ..+
T Consensus 123 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 166 (373)
T 1hz4_A 123 INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLS 166 (373)
T ss_dssp HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT
T ss_pred HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence 3 3345567777888888888888888888877 443
No 213
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.22 E-value=2.5e-06 Score=83.05 Aligned_cols=116 Identities=8% Similarity=-0.064 Sum_probs=89.7
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
-....+..+...|+|++|.+.|...+...|.+. +++++|.++++.++|++|+..++.++..
T Consensus 104 l~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-------------------~~~~~a~l~~~~~r~~dA~~~l~~a~~~ 164 (282)
T 4f3v_A 104 ITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-------------------VAWMKAVVYGAAERWTDVIDQVKSAGKW 164 (282)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-------------------HHHHHHHHHHHTTCHHHHHHHHTTGGGC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-------------------HHHHHHHHHHHcCCHHHHHHHHHHhhcc
Confidence 345578889999999999999999987665432 6899999999999999999999988886
Q ss_pred C-CCc-hHHHHHHHHHHHhccChHHHHHHHHHHHhccccCC----cHHHHHHHHHHHHHHH
Q 035535 85 E-SSH-FKALLCKGKILLSLNRYSMALDCFKETLVDAQASG----SLETVNGFLEKSKKLE 139 (518)
Q Consensus 85 ~-p~~-~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~----~~~~l~~~l~~~~~~~ 139 (518)
. |.. ..+++.+|.++..+|++++|+.+|++++..|.+|. ..-.....+.+..+.+
T Consensus 165 ~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~d 225 (282)
T 4f3v_A 165 PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNES 225 (282)
T ss_dssp SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHH
T ss_pred CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHH
Confidence 4 322 45899999999999999999999999984443233 2233444444444443
No 214
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.20 E-value=1e-05 Score=81.38 Aligned_cols=102 Identities=14% Similarity=0.054 Sum_probs=85.6
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|+|++|+..|.+++.+.+...... .+ ....++.++|.++..+|++++|+..+++++.+
T Consensus 95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~--~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 164 (373)
T 1hz4_A 95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQ--LP--------MHEFLVRIRAQLLWAWARLDEAEASARSGIEV 164 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTT--ST--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcccc--Cc--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 466789999999999999999999999886533210 00 11237889999999999999999999999998
Q ss_pred CCC-----chHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 85 ESS-----HFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~-----~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.|. ...+++.+|.++...|++++|...+++++
T Consensus 165 ~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~ 201 (373)
T 1hz4_A 165 LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE 201 (373)
T ss_dssp TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 764 34688999999999999999999999998
No 215
>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}
Probab=98.15 E-value=3.7e-06 Score=76.90 Aligned_cols=43 Identities=19% Similarity=0.219 Sum_probs=38.7
Q ss_pred ccccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCC
Q 035535 315 LASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDM 357 (518)
Q Consensus 315 ~~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~ 357 (518)
...++||+|. +|+.....++++.++|+|||++||||++.|.+.
T Consensus 131 WmRfVn~A~~~~eqNl~a~q~~~~I~y~a~RdI~pGeELlvwYg~~ 176 (196)
T 3dal_A 131 WMRYVNPAHSPREQNLAACQNGMNIYFYTIKPIPANQELLVWYCRD 176 (196)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHH
T ss_pred eEEeEEecCCcccCCcEEEEECCEEEEEECcccCCCCEEEEecCHH
Confidence 3589999997 699888889999999999999999999999853
No 216
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=98.12 E-value=7e-06 Score=87.26 Aligned_cols=99 Identities=15% Similarity=0.092 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHHh-------hhcHH-------HHHHHHHHHHH-HhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh
Q 035535 3 MQQLRSKATELLL-------REEWK-------ESVQVYTQFID-LCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR 67 (518)
Q Consensus 3 a~~l~~~Gn~~~~-------~g~~~-------~Ai~~y~~Al~-~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~ 67 (518)
.+.|...|..+.. .|+++ +|+..|.+|+. +.|++.. +|.+++..+.+
T Consensus 272 ~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~------------------l~~~~~~~~~~ 333 (530)
T 2ooe_A 272 PDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNML------------------LYFAYADYEES 333 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHH------------------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHH------------------HHHHHHHHHHh
Confidence 4667788888775 68877 99999999997 7888765 99999999999
Q ss_pred ccCHHHHHHHHHHHHhcCCCch-HHHHHHHHHHHhccChHHHHHHHHHHHhcc
Q 035535 68 LRDFDNALRDCEQALKIESSHF-KALLCKGKILLSLNRYSMALDCFKETLVDA 119 (518)
Q Consensus 68 lg~~~~Al~~~~~al~l~p~~~-ka~~~~g~al~~lg~~~~A~~~~~~al~~p 119 (518)
.|++++|...++++++++|.++ .+|...|.++...|++++|++.|++|+..|
T Consensus 334 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~ 386 (530)
T 2ooe_A 334 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA 386 (530)
T ss_dssp TTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT
T ss_pred cCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc
Confidence 9999999999999999999985 699999999999999999999999999443
No 217
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.10 E-value=1.7e-05 Score=68.53 Aligned_cols=86 Identities=10% Similarity=0.033 Sum_probs=66.9
Q ss_pred HHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHHHHHHHHHHHhc
Q 035535 9 KATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDNALRDCEQALKI 84 (518)
Q Consensus 9 ~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~Al~~~~~al~l 84 (518)
.|..+...+.+++|+..|++|.+. .++. +++|+|.+|.. .+++++|+..+++|.+.
T Consensus 31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~------------------a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~ 90 (138)
T 1klx_A 31 LSLVSNSQINKQKLFQYLSKACEL--NSGN------------------GCRFLGDFYENGKYVKKDLRKAAQYYSKACGL 90 (138)
T ss_dssp HHHHTCTTSCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHcC--CCHH------------------HHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC
Confidence 566666666777788888887765 2222 78888888888 78888888888888876
Q ss_pred CCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLS----LNRYSMALDCFKETL 116 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al 116 (518)
.++.+.+++|.+|.. .+++++|+.+|+++.
T Consensus 91 --g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa 124 (138)
T 1klx_A 91 --NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKAC 124 (138)
T ss_dssp --TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH
T ss_pred --CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHH
Confidence 578888888888888 788888888888887
No 218
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.07 E-value=3.1e-05 Score=74.99 Aligned_cols=91 Identities=14% Similarity=0.093 Sum_probs=78.4
Q ss_pred cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHhcCCCc-hHH
Q 035535 18 EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL-----RDFDNALRDCEQALKIESSH-FKA 91 (518)
Q Consensus 18 ~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l-----g~~~~Al~~~~~al~l~p~~-~ka 91 (518)
...+|....++||+++|+... ..+|.-+|..|.+. |+.++|.+.+++|++++|+. ..+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~----------------GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~ 241 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQE----------------GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDH 241 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHH----------------HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHH
T ss_pred hHHHHHHHHHHHHHhCCCccc----------------CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchH
Confidence 467899999999999999432 12899999999996 99999999999999999975 999
Q ss_pred HHHHHHHHHh-ccChHHHHHHHHHHH-hcccc-CCc
Q 035535 92 LLCKGKILLS-LNRYSMALDCFKETL-VDAQA-SGS 124 (518)
Q Consensus 92 ~~~~g~al~~-lg~~~~A~~~~~~al-~~p~~-~~~ 124 (518)
++..|..+.. .|++++|.+.+++++ ..|.. |..
T Consensus 242 ~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 242 HITYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 9999999988 499999999999999 55543 543
No 219
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.04 E-value=1.9e-05 Score=69.27 Aligned_cols=73 Identities=15% Similarity=0.143 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHh-hc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHH
Q 035535 3 MQQLRSKATELLLRE---EWKESVQVYTQFIDLC-QS-QITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRD 77 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g---~~~~Ai~~y~~Al~~~-p~-~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~ 77 (518)
.+...+.|..+.+.+ +.++++..++..++.+ |. ..+ +++++|.+++++|+|++|+++
T Consensus 32 ~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd------------------~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 32 KSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRD------------------YVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHH------------------HHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHH------------------HHHHHHHHHHHccCHHHHHHH
Confidence 466788899999877 7889999999999987 52 222 899999999999999999999
Q ss_pred HHHHHhcCCCchHHHH
Q 035535 78 CEQALKIESSHFKALL 93 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~ 93 (518)
++++|+++|+|..|..
T Consensus 94 ~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 94 VRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHCTTCHHHHH
T ss_pred HHHHHhcCCCCHHHHH
Confidence 9999999999988764
No 220
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.02 E-value=2.6e-05 Score=63.84 Aligned_cols=68 Identities=16% Similarity=0.032 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-------CCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIE-------SSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~-------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
-.+.+|..+++.++|..|+.+++.|++.. +..+..+..+|.+++.+|+++.|+..+++++ ..|+++..
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~ 82 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRA 82 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHH
Confidence 57799999999999999999999999863 4567889999999999999999999999999 88876544
No 221
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.00 E-value=4.2e-05 Score=76.94 Aligned_cols=116 Identities=14% Similarity=0.176 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhh---hcHHHHHHHHHHHHHHhhcccchhhh--------------hhHHHHHHHHH------------HH
Q 035535 5 QLRSKATELLLR---EEWKESVQVYTQFIDLCQSQITETKQ--------------EASQLSKLKKS------------LC 55 (518)
Q Consensus 5 ~l~~~Gn~~~~~---g~~~~Ai~~y~~Al~~~p~~~~~~~~--------------~~~~~~~~~~~------------l~ 55 (518)
.+.-+|..++.+ .++.+|+.+|++|++++|+.+..-.. .......+... ..
T Consensus 198 dl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a 277 (372)
T 3ly7_A 198 TNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS 277 (372)
T ss_dssp HHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH
Confidence 455667777654 56799999999999999986542110 00011111110 11
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcccc
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~ 121 (518)
.+|.-++.+++..|++++|+..+++|+.++|+ +-+|..+|.++...|++++|++.|.+|+ +.|..
T Consensus 278 ~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 278 IIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 23444666777789999999999999999975 6788999999999999999999999999 77643
No 222
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.97 E-value=2.2e-05 Score=63.11 Aligned_cols=69 Identities=23% Similarity=0.131 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHH
Q 035535 2 LMQQLRSKATELLLREE---WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDC 78 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~---~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~ 78 (518)
+++.+...|..++..++ ..+|...+.+||.++|+++. +++.+|..+++.|+|++|+..+
T Consensus 5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~r------------------A~~~lg~~~~~~g~y~~Ai~~w 66 (93)
T 3bee_A 5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEA------------------ALSLIANDHFISFRFQEAIDTW 66 (93)
T ss_dssp CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHH------------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 56788899999986665 79999999999999999987 9999999999999999999999
Q ss_pred HHHHhcCCCc
Q 035535 79 EQALKIESSH 88 (518)
Q Consensus 79 ~~al~l~p~~ 88 (518)
+++++.+|..
T Consensus 67 ~~~l~~~p~~ 76 (93)
T 3bee_A 67 VLLLDSNDPN 76 (93)
T ss_dssp HHHHTCCCTT
T ss_pred HHHHhhCCCC
Confidence 9999999984
No 223
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.94 E-value=3.9e-05 Score=80.60 Aligned_cols=60 Identities=22% Similarity=0.072 Sum_probs=50.6
Q ss_pred HHHHHHHHHHh----ccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHH-hc
Q 035535 57 ALSNRAEARSR----LRDFDNALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETL-VD 118 (518)
Q Consensus 57 ~~~nra~a~~~----lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al-~~ 118 (518)
+++++|.+|.. .+++++|+..+++|++.+ ++.+++++|.+|.. .+++++|...|++++ ..
T Consensus 365 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 365 AQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTND 433 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 78888888888 788888888888888764 67888888888887 788888888888888 55
No 224
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.87 E-value=5.3e-05 Score=79.10 Aligned_cols=107 Identities=7% Similarity=-0.037 Sum_probs=87.0
Q ss_pred HHHHHHHHHHHhhh---cHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhc----cCHHHHHH
Q 035535 4 QQLRSKATELLLRE---EWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRL----RDFDNALR 76 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g---~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~l----g~~~~Al~ 76 (518)
..+...|..+...| ++++|+..|+++++..|..+. .++++|.+|... +++++|+.
T Consensus 177 ~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~------------------~~~~Lg~~y~~g~~~~~d~~~A~~ 238 (452)
T 3e4b_A 177 ICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ------------------RVDSVARVLGDATLGTPDEKTAQA 238 (452)
T ss_dssp THHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH------------------HHHHHHHHHTCGGGSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH------------------HHHHHHHHHhCCCCCCCCHHHHHH
Confidence 35678899999999 999999999999998877654 678999999776 79999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHH-H--HhccChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535 77 DCEQALKIESSHFKALLCKGKI-L--LSLNRYSMALDCFKETLVDAQASGSLETVNGFL 132 (518)
Q Consensus 77 ~~~~al~l~p~~~ka~~~~g~a-l--~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l 132 (518)
.++++. |+++.+++.+|.+ + ...+++++|+..|+++... .++.....+..++
T Consensus 239 ~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g~~~A~~~Lg~~y 293 (452)
T 3e4b_A 239 LLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-DQPRAELLLGKLY 293 (452)
T ss_dssp HHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-CCHHHHHHHHHHH
Confidence 999998 8999999999999 4 4789999999999999832 2333334444433
No 225
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=97.84 E-value=1.3e-05 Score=70.56 Aligned_cols=45 Identities=18% Similarity=0.203 Sum_probs=38.7
Q ss_pred ccccccCCCCC---CceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCC
Q 035535 315 LASFINHSCSP---NARRVHVGDYIIVHASRDVKAGEEITFAYFDMLL 359 (518)
Q Consensus 315 ~~s~~NHsC~P---N~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~ 359 (518)
.+.++||+|.+ |+.....++++.++|+|||++||||++.|.+.+.
T Consensus 97 WmR~Vn~A~~~~eqNl~a~q~~~~I~~~a~rdI~pGeELlv~Yg~~y~ 144 (151)
T 3db5_A 97 WMMFVRKARNREEQNLVAYPHDGKIFFCTSQDIPPENELLFYYSRDYA 144 (151)
T ss_dssp GGGGCEECSSTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECC---
T ss_pred ceeEEEecCCcccCceEEEEECCEEEEEEccccCCCCEEEEecCHHHH
Confidence 35899999975 9998888999999999999999999999998653
No 226
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=97.79 E-value=0.00017 Score=75.70 Aligned_cols=94 Identities=7% Similarity=-0.036 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHHHh----hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh----ccCHHH
Q 035535 2 LMQQLRSKATELLL----REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR----LRDFDN 73 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~----~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~----lg~~~~ 73 (518)
+++.+...|..++. .+++++|+..|+++++. .++. +++++|.+|.. .+++++
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~------------------a~~~Lg~~y~~g~g~~~~~~~ 97 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTP------------------AEYVLGLRYMNGEGVPQDYAQ 97 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHH------------------HHHHHHHHHHHTSSSCCCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHH------------------HHHHHHHHHHcCCCCCCCHHH
Confidence 45677888999998 89999999999999875 3333 89999999999 999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHHHh----ccChHHHHHHHHHHHh
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKILLS----LNRYSMALDCFKETLV 117 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al~~----lg~~~~A~~~~~~al~ 117 (518)
|+..++++.+. .++.+++.+|.+|.. .+++++|+..|+++..
T Consensus 98 A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~ 143 (490)
T 2xm6_A 98 AVIWYKKAALK--GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAE 143 (490)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHH
Confidence 99999999876 478999999999998 8899999999999983
No 227
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.75 E-value=0.00028 Score=72.04 Aligned_cols=101 Identities=7% Similarity=0.052 Sum_probs=74.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+.+.|..++..|+|++|++.|.+++...+..... .....++.+++.++...|++++|+..+++++.
T Consensus 56 ~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 123 (434)
T 4b4t_Q 56 TSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS------------KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIE 123 (434)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH------------HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch------------HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999999987764320 01122566677777777777777777777776
Q ss_pred cC------CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IE------SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~------p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+. +...+.+.++|.++...|+|++|+..+++++
T Consensus 124 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~ 162 (434)
T 4b4t_Q 124 FAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLL 162 (434)
T ss_dssp HHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHH
Confidence 52 3346677777777777788888877777776
No 228
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=97.74 E-value=9.4e-05 Score=77.15 Aligned_cols=102 Identities=13% Similarity=0.091 Sum_probs=83.8
Q ss_pred HHHHHHHHHHhh----hcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH-H--HhccCHHHHHHH
Q 035535 5 QLRSKATELLLR----EEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA-R--SRLRDFDNALRD 77 (518)
Q Consensus 5 ~l~~~Gn~~~~~----g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a-~--~~lg~~~~Al~~ 77 (518)
.+.+.|..+... +++++|+..|+++. |.++. +++++|.+ + ...+++++|+..
T Consensus 215 ~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~------------------a~~~Lg~~~~~~~~~~d~~~A~~~ 273 (452)
T 3e4b_A 215 RVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPA------------------SWVSLAQLLYDFPELGDVEQMMKY 273 (452)
T ss_dssp HHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTH------------------HHHHHHHHHHHSGGGCCHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHH------------------HHHHHHHHHHhCCCCCCHHHHHHH
Confidence 346788887655 69999999999998 77766 89999999 4 578999999999
Q ss_pred HHHHHhcCCCchHHHHHHHHHHHhcc-----ChHHHHHHHHHHHhccccCCcHHHHHHHH
Q 035535 78 CEQALKIESSHFKALLCKGKILLSLN-----RYSMALDCFKETLVDAQASGSLETVNGFL 132 (518)
Q Consensus 78 ~~~al~l~p~~~ka~~~~g~al~~lg-----~~~~A~~~~~~al~~p~~~~~~~~l~~~l 132 (518)
++++.+.+ ++.+++.+|.+|. .| ++++|+.+|+++. |.++.....+..++
T Consensus 274 ~~~Aa~~g--~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa--~g~~~A~~~Lg~~y 328 (452)
T 3e4b_A 274 LDNGRAAD--QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV--GREVAADYYLGQIY 328 (452)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHCC--CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh--CCCHHHHHHHHHHH
Confidence 99999664 8999999999998 55 9999999999998 66665555555444
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.73 E-value=0.00026 Score=59.82 Aligned_cols=101 Identities=14% Similarity=0.075 Sum_probs=78.9
Q ss_pred HHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH---HHHHHHHHHhcC-C-C
Q 035535 13 LLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDN---ALRDCEQALKIE-S-S 87 (518)
Q Consensus 13 ~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~---Al~~~~~al~l~-p-~ 87 (518)
-........+...|.+++...+.... +.+|.|-++.+..+... ++..++..+.-+ | .
T Consensus 11 ~~~~~~l~~~~~~y~~e~~~~~~s~~------------------~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~ 72 (126)
T 1nzn_A 11 LVSVEDLLKFEKKFQSEKAAGSVSKS------------------TQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEE 72 (126)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSCCCHH------------------HHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHH
T ss_pred cCCHHHHHHHHHHHHHHhccCCCcHH------------------HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcch
Confidence 34455667778888888775543333 88999999999887776 999999999987 6 5
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
.-..+|.+|..++.+|+|++|+++++.+| ..|++.+. ..+..++
T Consensus 73 ~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA-~~Lk~~i 117 (126)
T 1nzn_A 73 QRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQA-KELERLI 117 (126)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHH-HHHHHHH
Confidence 77899999999999999999999999999 77765543 3344433
No 230
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.71 E-value=0.00021 Score=82.55 Aligned_cols=90 Identities=12% Similarity=0.094 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
...|.+.|.++.+.|+|++|++.|.+| ++++ .|.+.+.++.++|+|++|++.+..|.
T Consensus 1105 p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~s------------------ay~eVa~~~~~lGkyEEAIeyL~mAr 1161 (1630)
T 1xi4_A 1105 PAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPS------------------SYMEVVQAANTSGNWEELVKYLQMAR 1161 (1630)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChH------------------HHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 456888888888889999999998776 3333 67777888888888888888877766
Q ss_pred hcCCC---------------------------chHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 83 KIESS---------------------------HFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 83 ~l~p~---------------------------~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
+.+++ +...++..|..+...|+|++|...|.++
T Consensus 1162 k~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA 1221 (1630)
T 1xi4_A 1162 KKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV 1221 (1630)
T ss_pred hhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh
Confidence 54422 3345667777777777777777777765
No 231
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=97.67 E-value=0.00044 Score=61.03 Aligned_cols=102 Identities=11% Similarity=0.077 Sum_probs=81.4
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+++....++..|.|+.|+-.++.++.+..+++. ..+|. ..+.++...|.+++..++|..|...|++||++
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~--~~sp~-------~~~~~l~~ladalf~~~eyrrA~~~y~qALq~ 92 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPE--LFSPP-------QKYQLLVYHADSLFHDKEYRNAVSKYTMALQQ 92 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTT--SSCHH-------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcc--cccHH-------HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHH
Confidence 4678889999999999999999999988755443 11222 22448999999999999999999999999765
Q ss_pred C------C-------------------CchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 85 E------S-------------------SHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 85 ~------p-------------------~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
. | ......|+.|.||..++++++|+..++..
T Consensus 93 ~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 93 KKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 2 1 11267899999999999999999988754
No 232
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.66 E-value=0.00016 Score=83.35 Aligned_cols=95 Identities=9% Similarity=0.148 Sum_probs=68.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...|+.++..|+|++|+..|++| . .|..+|.++.++|+|++|++.+.+|..
T Consensus 1196 ad~~~iGd~le~eg~YeeA~~~Y~kA--------~------------------ny~rLA~tLvkLge~q~AIEaarKA~n 1249 (1630)
T 1xi4_A 1196 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S------------------NFGRLASTLVHLGEYQAAVDGARKANS 1249 (1630)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHhh--------h------------------HHHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 46778999999999999999999996 2 688999999999999999999999944
Q ss_pred cCC-------------------------CchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 84 IES-------------------------SHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 84 l~p-------------------------~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.++ .++.-+..++..|...|.|++|+..|++++ +++.+...
T Consensus 1250 ~~aWkev~~acve~~Ef~LA~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gm 1316 (1630)
T 1xi4_A 1250 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGM 1316 (1630)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHH
Confidence 332 123334445555556666666666666666 44433333
No 233
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.62 E-value=0.00029 Score=60.60 Aligned_cols=93 Identities=8% Similarity=0.023 Sum_probs=75.8
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
.+++++|+..|+++.+.. ++. +. +|.+|...+.+++|+..+++|.+. .++.+++.+
T Consensus 8 ~~d~~~A~~~~~~aa~~g--~~~------------------a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~L 63 (138)
T 1klx_A 8 KKDLKKAIQYYVKACELN--EMF------------------GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFL 63 (138)
T ss_dssp HHHHHHHHHHHHHHHHTT--CTT------------------HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcCC--CHh------------------hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHH
Confidence 468999999999999875 222 45 899999999999999999999988 689999999
Q ss_pred HHHHHh----ccChHHHHHHHHHHHhccccCCcHHHHHHHHH
Q 035535 96 GKILLS----LNRYSMALDCFKETLVDAQASGSLETVNGFLE 133 (518)
Q Consensus 96 g~al~~----lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~ 133 (518)
|.+|.. .+++++|+..|+++... .++.....+..++.
T Consensus 64 g~~y~~G~g~~~d~~~A~~~~~~Aa~~-g~~~a~~~Lg~~y~ 104 (138)
T 1klx_A 64 GDFYENGKYVKKDLRKAAQYYSKACGL-NDQDGCLILGYKQY 104 (138)
T ss_dssp HHHHHHCSSSCCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHH
T ss_pred HHHHHcCCCCCccHHHHHHHHHHHHcC-CCHHHHHHHHHHHH
Confidence 999999 89999999999999943 23444444444443
No 234
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.60 E-value=0.00033 Score=71.50 Aligned_cols=105 Identities=9% Similarity=0.034 Sum_probs=84.5
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc---
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI--- 84 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l--- 84 (518)
..|..+...|++++|+..|++++...+.... ......++.++|.++...|+|.+|+..+++++..
T Consensus 100 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~ 167 (434)
T 4b4t_Q 100 LIEKFEQVPDSLDDQIFVCEKSIEFAKREKR------------VFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKK 167 (434)
T ss_dssp HHHHHCSCCSCHHHHHHHHHHHHHHHHHSSC------------CSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhCc------------cHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHh
Confidence 3456666788999999999999998765432 0112338999999999999999999999999875
Q ss_pred ---CCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCc
Q 035535 85 ---ESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGS 124 (518)
Q Consensus 85 ---~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~ 124 (518)
.|....++...|.+|..+|+|++|...|++++ ..+..+..
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 211 (434)
T 4b4t_Q 168 LDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCP 211 (434)
T ss_dssp SSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC
T ss_pred cccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCc
Confidence 34557899999999999999999999999999 55544443
No 235
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.60 E-value=0.00035 Score=68.79 Aligned_cols=97 Identities=13% Similarity=0.019 Sum_probs=78.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhh--cccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQ--SQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p--~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
.+...|..+...|++++|+..+.++|...| .... ++.-.+.+++++|+++.|.+.++++.
T Consensus 102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~le------------------a~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTE------------------LLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHH------------------HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHH------------------HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 346789999999999999999999988776 3333 88899999999999999999999999
Q ss_pred hcCCC----chHHHHHH--HHHHHhcc--ChHHHHHHHHHHH-hcc
Q 035535 83 KIESS----HFKALLCK--GKILLSLN--RYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~l~p~----~~ka~~~~--g~al~~lg--~~~~A~~~~~~al-~~p 119 (518)
+.+|+ +-..+..+ |.+.+..| ++.+|...|+++. ..|
T Consensus 164 ~~~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p 209 (310)
T 3mv2_B 164 NAIEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFP 209 (310)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSC
T ss_pred hcCccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCC
Confidence 99993 23334444 54466666 9999999999988 444
No 236
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.55 E-value=7e-05 Score=77.23 Aligned_cols=102 Identities=12% Similarity=0.182 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..|...|+.++..|+|++|+..|+++ + .|.++|.|+.++|+|++|++.+.+|
T Consensus 123 ~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~------------------n~~~LA~~L~~Lg~yq~AVea~~KA-- 174 (449)
T 1b89_A 123 AHIQQVGDRCYDEKMYDAAKLLYNNV--------S------------------NFGRLASTLVHLGEYQAAVDGARKA-- 174 (449)
T ss_dssp --------------CTTTHHHHHHHT--------T------------------CHHHHHHHHHTTTCHHHHHHHHHHH--
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--------h------------------hHHHHHHHHHHhccHHHHHHHHHHc--
Confidence 46788999999999999999999977 2 6889999999999999999999999
Q ss_pred cCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHHH
Q 035535 84 IESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 84 l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~~~ 139 (518)
.++++|-....++...|+|+.|..+.......|++ ...+..++++.++.+
T Consensus 175 ---~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~---l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 175 ---NSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADE---LEELINYYQDRGYFE 224 (449)
T ss_dssp ---TCHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHH---HHHHHHHHHHTTCHH
T ss_pred ---CCchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhh---HHHHHHHHHHCCCHH
Confidence 47888888899999999999998777753344432 344445555444443
No 237
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.24 E-value=0.0023 Score=62.88 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=77.0
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHH--HHhcc--CHHHHHHH
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEA--RSRLR--DFDNALRD 77 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a--~~~lg--~~~~Al~~ 77 (518)
..+.....+..+++.|+.+.|...+.+..+.+|+... .++ ....+++.+ .+..| ++.+|+..
T Consensus 135 ~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~-----~~d---------~~l~~Laea~v~l~~g~~~~q~A~~~ 200 (310)
T 3mv2_B 135 TTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVS-----GDN---------EMILNLAESYIKFATNKETATSNFYY 200 (310)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHH-----HHH---------HHHHHHHHHHHHHHHTCSTTTHHHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccc-----cch---------HHHHHHHHHHHHHHhCCccHHHHHHH
Confidence 3455667788899999999999999999888873100 000 056677766 55556 99999999
Q ss_pred HHHHHhcCCC--chHHHHHHHHHHHhccChHHHHHHHHHHH-hccc
Q 035535 78 CEQALKIESS--HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQ 120 (518)
Q Consensus 78 ~~~al~l~p~--~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~ 120 (518)
++++.+..|+ ....++. ++..+|+|++|.+.++.++ ..|+
T Consensus 201 f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~ 243 (310)
T 3mv2_B 201 YEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYS 243 (310)
T ss_dssp HHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHH
T ss_pred HHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhccc
Confidence 9999888887 3445555 8999999999999999777 5443
No 238
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.21 E-value=0.0047 Score=62.94 Aligned_cols=113 Identities=11% Similarity=0.019 Sum_probs=91.5
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh---hhhH-HHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK---QEAS-QLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~---~~~~-~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
+.+...|......|+.++|+..+.+|+.+.....-++. .+.. ....+......+...++.+++..|++.+|+..+.
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 45566677777789999999999999998654432211 1222 2234555566678889999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 80 QALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+++..+|-+..+|..+-.+|+..|+..+|++.|+++.
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999876
No 239
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=97.16 E-value=0.00025 Score=62.30 Aligned_cols=42 Identities=14% Similarity=0.219 Sum_probs=38.5
Q ss_pred cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCC
Q 035535 316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDM 357 (518)
Q Consensus 316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~ 357 (518)
+.++||+|. +|+.....++++.++|+|+|++||||++.|.+.
T Consensus 97 mr~vn~a~~~~eqNl~a~q~~~~I~~~~~r~I~pGeELlv~Y~~~ 141 (152)
T 3ihx_A 97 MMFVRPAQNHLEQNLVAYQYGHHVYYTTIKNVEPKQELKVWYAAS 141 (152)
T ss_dssp GGGCCBCCSTTTCCEEEEECSSSEEEEESSCBCTTCBCCEEECHH
T ss_pred eeeeeccCCccCCCcEEEEeCCeEEEEEeeecCCCCEEEEechHH
Confidence 589999998 799988889999999999999999999999864
No 240
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.13 E-value=0.00084 Score=69.21 Aligned_cols=102 Identities=10% Similarity=0.051 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
+..+..+|+.+++.|+|++|++.|.+|. ++. .|-....++...|+|+.|...... +
T Consensus 148 a~n~~~LA~~L~~Lg~yq~AVea~~KA~-----~~~------------------~Wk~v~~aCv~~~ef~lA~~~~l~-L 203 (449)
T 1b89_A 148 VSNFGRLASTLVHLGEYQAAVDGARKAN-----STR------------------TWKEVCFACVDGKEFRLAQMCGLH-I 203 (449)
T ss_dssp TTCHHHHHHHHHTTTCHHHHHHHHHHHT-----CHH------------------HHHHHHHHHHHTTCHHHHHHTTTT-T
T ss_pred hhhHHHHHHHHHHhccHHHHHHHHHHcC-----Cch------------------hHHHHHHHHHHcCcHHHHHHHHHH-H
Confidence 3457789999999999999999999992 222 788889999999999999665553 4
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
..+|++ +..+...|...|++++|+..|++++ +++.+.+....+..+
T Consensus 204 ~~~ad~---l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il 250 (449)
T 1b89_A 204 VVHADE---LEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAIL 250 (449)
T ss_dssp TTCHHH---HHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHH
T ss_pred HhCHhh---HHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 455555 5568888999999999999999999 665444444444333
No 241
>3ray_A PR domain-containing protein 11; structural genomics consortium, SGC, histone methylation, Zn transcriptional regulation, chromatin, transcription; 1.73A {Homo sapiens}
Probab=97.03 E-value=0.00042 Score=64.79 Aligned_cols=57 Identities=18% Similarity=0.191 Sum_probs=41.1
Q ss_pred cccccCCCC---CCceEEeeCCEEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCeEeecCCCC
Q 035535 316 ASFINHSCS---PNARRVHVGDYIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGFHCKCKRCK 381 (518)
Q Consensus 316 ~s~~NHsC~---PN~~~~~~~~~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F~C~C~~C~ 381 (518)
+.++||+|. +|+.....++++.++|+|||++||||++.|.+.++ +..+-.|.++.|.
T Consensus 141 mRfVn~Ar~~~EqNL~A~q~~~~Iyy~a~RdI~pGeELlVwYg~~Y~---------~~l~~~~~~~~~~ 200 (237)
T 3ray_A 141 MRYVVISREEREQNLLAFQHSERIYFRACRDIRPGEWLRVWYSEDYM---------KRLHSMSQETIHR 200 (237)
T ss_dssp GGGCEECCCTTTCCEEEEEETTEEEEEESSCBCTTCBCEEEECHHHH---------HHHCC--------
T ss_pred eeEEEcCCCcccccceeEEeCCEEEEEEccccCCCCEEEEeeCHHHH---------HHhcccccchhcc
Confidence 589999996 69888888999999999999999999999987532 2344567888884
No 242
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.91 E-value=0.0027 Score=53.54 Aligned_cols=77 Identities=13% Similarity=0.060 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhcHHH---HHHHHHHHHHHh-hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKE---SVQVYTQFIDLC-QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~---Ai~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
+.-.+.|..+.+..+..+ +|..++..+... |... -.+++.+|.+++++|+|.+|+..++
T Consensus 36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~-----------------Rd~lY~LAvg~yklg~Y~~A~~~~~ 98 (126)
T 1nzn_A 36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ-----------------RDYVFYLAVGNYRLKEYEKALKYVR 98 (126)
T ss_dssp HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH-----------------HHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH-----------------HHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 344555666665554444 777777766543 2110 1189999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHH
Q 035535 80 QALKIESSHFKALLCKGK 97 (518)
Q Consensus 80 ~al~l~p~~~ka~~~~g~ 97 (518)
..|+++|+|.+|.--+..
T Consensus 99 ~lL~~eP~n~QA~~Lk~~ 116 (126)
T 1nzn_A 99 GLLQTEPQNNQAKELERL 116 (126)
T ss_dssp HHHHHCTTCHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHH
Confidence 999999999888655443
No 243
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.68 E-value=0.014 Score=49.45 Aligned_cols=76 Identities=16% Similarity=0.059 Sum_probs=59.1
Q ss_pred HHHHHHHHHHhccC---HHHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 57 ALSNRAEARSRLRD---FDNALRDCEQALKIESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 57 ~~~nra~a~~~lg~---~~~Al~~~~~al~l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
.-+|.|-++.+..+ ..+++..++..++.+|. .-..+|.+|.+++.+|+|++|+++.+.++ ..|+|.+. ..+..+
T Consensus 42 t~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA-~~Lk~~ 120 (134)
T 3o48_A 42 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV-GALKSM 120 (134)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH-HHHHHH
T ss_pred hHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH-HHHHHH
Confidence 77888888888765 45788889999988884 46789999999999999999999999999 77765543 344444
Q ss_pred HH
Q 035535 132 LE 133 (518)
Q Consensus 132 l~ 133 (518)
++
T Consensus 121 Ie 122 (134)
T 3o48_A 121 VE 122 (134)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 244
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.57 E-value=0.014 Score=49.41 Aligned_cols=43 Identities=14% Similarity=0.072 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHH
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKI 98 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~a 98 (518)
-+++.+|.+++++|+|++|...++.+|+++|+|.+|.--+..+
T Consensus 79 d~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~I 121 (134)
T 3o48_A 79 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSMV 121 (134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence 4889999999999999999999999999999998876544433
No 245
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.57 E-value=0.025 Score=54.69 Aligned_cols=61 Identities=13% Similarity=-0.028 Sum_probs=50.7
Q ss_pred CHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhc-----cChHHHHHHHHHHH-hcccc-CCcHHHHHH
Q 035535 70 DFDNALRDCEQALKIESS--HFKALLCKGKILLSL-----NRYSMALDCFKETL-VDAQA-SGSLETVNG 130 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p~--~~ka~~~~g~al~~l-----g~~~~A~~~~~~al-~~p~~-~~~~~~l~~ 130 (518)
....|...+++|+++||+ +..+|..+|..|..+ |+.++|.++|++|+ +.|+. ....-...+
T Consensus 178 ~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~ 247 (301)
T 3u64_A 178 TVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYAD 247 (301)
T ss_dssp HHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHH
Confidence 468899999999999999 677999999999996 99999999999999 88754 433333333
No 246
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=96.46 E-value=0.0049 Score=61.88 Aligned_cols=73 Identities=16% Similarity=0.016 Sum_probs=60.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+...|..++..|++++|+..+++|+.++|+ .. +|.-+|.++.-.|++++|++.+++|+.+
T Consensus 279 ~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~------------------a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 279 IYQIKAVSALVKGKTDESYQAINTGIDLEMS-WL------------------NYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HH------------------HHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3445666777889999999999999999864 22 7888999999999999999999999999
Q ss_pred CCCchHHHHHHH
Q 035535 85 ESSHFKALLCKG 96 (518)
Q Consensus 85 ~p~~~ka~~~~g 96 (518)
+|.....++..+
T Consensus 340 ~P~~~t~~~~~~ 351 (372)
T 3ly7_A 340 RPGANTLYWIEN 351 (372)
T ss_dssp SCSHHHHHHHHH
T ss_pred CCCcChHHHHhC
Confidence 998764444333
No 247
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.40 E-value=0.023 Score=48.70 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=60.8
Q ss_pred HHHHHHHHHHhccCH---HHHHHHHHHHHhcCCC-chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHH
Q 035535 57 ALSNRAEARSRLRDF---DNALRDCEQALKIESS-HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGF 131 (518)
Q Consensus 57 ~~~nra~a~~~lg~~---~~Al~~~~~al~l~p~-~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~ 131 (518)
..+|.|-++.+..+. .+++..++..+..+|. .-..+|.+|..++.+|+|++|+++.+..| ..|+|.+. ..+..+
T Consensus 41 t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA-~~Lk~~ 119 (144)
T 1y8m_A 41 SRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV-GALKSM 119 (144)
T ss_dssp HHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH-HHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH-HHHHHH
Confidence 788999999887754 5799999999998884 56789999999999999999999999999 77755443 334444
Q ss_pred HH
Q 035535 132 LE 133 (518)
Q Consensus 132 l~ 133 (518)
++
T Consensus 120 Ie 121 (144)
T 1y8m_A 120 VE 121 (144)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 248
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.39 E-value=0.064 Score=46.38 Aligned_cols=119 Identities=14% Similarity=0.016 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHhhhcH------HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHH
Q 035535 3 MQQLRSKATELLLREEW------KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALR 76 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~------~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~ 76 (518)
.+.|..-...+-+.|+. +.-++.|++|+...|.... +..+..+-+|.+.|.- ..+++.++|.+
T Consensus 13 yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~----------~~wrrYI~LWIrYA~~-~ei~D~d~aR~ 81 (161)
T 4h7y_A 13 PEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKY----------GQNESFARIQVRFAEL-KAIQEPDDARD 81 (161)
T ss_dssp HHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGG----------TTCHHHHHHHHHHHHH-HHHHCGGGCHH
T ss_pred HHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCcccc----------ccHHHHHHHHHHHHHH-HHhcCHHHHHH
Confidence 45666666666677888 8889999999998776421 1223344467777754 67799999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 77 DCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 77 ~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
.|+.++++....++.|...|.--.+.|+...|.+.+.+|+ .-| ...+.+...++.+
T Consensus 82 vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~---k~~~~le~a~~nl 138 (161)
T 4h7y_A 82 YFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGA---VPLEMLEIALRNL 138 (161)
T ss_dssp HHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC---BCHHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCC---CcHHHHHHHHHhh
Confidence 9999999988899999999999999999999999999999 554 3345555555543
No 249
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=96.17 E-value=0.025 Score=48.46 Aligned_cols=40 Identities=15% Similarity=0.060 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHH
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCK 95 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~ 95 (518)
.+++.+|.+++++|+|.+|..+++..|+++|+|.+|.--+
T Consensus 78 dcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk 117 (144)
T 1y8m_A 78 ECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALK 117 (144)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHH
Confidence 3789999999999999999999999999999998876544
No 250
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.05 E-value=0.023 Score=50.04 Aligned_cols=94 Identities=16% Similarity=0.098 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchh---------hhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITET---------KQEASQLSKLKKSLCLALSNRAEARSRLRDFDN 73 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~---------~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~ 73 (518)
++.+.-.|+.+|.+++|..|...|++||.....-...+ +..|... .+ ..-+.+.+..|.||.+++++.+
T Consensus 63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~-~~-~~e~Elkykia~C~~~l~~~~~ 140 (167)
T 3ffl_A 63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQ-CL-PSEIEVKYKLAECYTVLKQDKD 140 (167)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC---------------------CC-CCHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccc-cc-cchHHHHHHHHHHHHHHCCHHH
Confidence 56778899999999999999999999998754221100 0011000 00 0001278899999999999999
Q ss_pred HHHHHHHHHhcCCCchHHHHHHHHHH
Q 035535 74 ALRDCEQALKIESSHFKALLCKGKIL 99 (518)
Q Consensus 74 Al~~~~~al~l~p~~~ka~~~~g~al 99 (518)
|+...+.. -..-..++.-..+|+.|
T Consensus 141 Ai~~Le~I-p~k~Rt~kvnm~LakLy 165 (167)
T 3ffl_A 141 AIAILDGI-PSRQRTPKINMLLANLY 165 (167)
T ss_dssp HHHHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred HHHHHhcC-CchhcCHHHHHHHHHHh
Confidence 99876543 22224567666666654
No 251
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.91 E-value=0.15 Score=55.78 Aligned_cols=98 Identities=3% Similarity=-0.156 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESV-QVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai-~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
..-|...+.-+...|+.++|+ ..|.+|+..+|.+.. +|...+....+.|++++|.+.++++
T Consensus 343 ~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~------------------Lwl~~a~~ee~~~~~e~aR~iyek~ 404 (679)
T 4e6h_A 343 PEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAV------------------LAFSLSEQYELNTKIPEIETTILSC 404 (679)
T ss_dssp HHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 345677777777888888997 999999999987654 7889999999999999999999999
Q ss_pred Hhc-----------CCC-----------chHHHHHHHHHHHhccChHHHHHHHHHHHhc
Q 035535 82 LKI-----------ESS-----------HFKALLCKGKILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 82 l~l-----------~p~-----------~~ka~~~~g~al~~lg~~~~A~~~~~~al~~ 118 (518)
+.. .|+ ...+|...+......|..+.|...|.+|+..
T Consensus 405 l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~ 463 (679)
T 4e6h_A 405 IDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL 463 (679)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 975 242 4567888888888999999999999999954
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=94.78 E-value=0.086 Score=57.94 Aligned_cols=59 Identities=14% Similarity=0.153 Sum_probs=52.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
++.--+.-++..|+|+-|++.+++|+.+-|.....|+.++.+|..+|+|+.|+-.+..+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 44445666778899999999999999999999999999999999999999999877765
No 253
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=94.17 E-value=0.44 Score=52.00 Aligned_cols=97 Identities=11% Similarity=-0.004 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-HHHHHHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQ-ITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-FDNALRDCEQAL 82 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~-~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-~~~Al~~~~~al 82 (518)
.|...++...+.|+.+.|...|.+|+...|.. .. +|...|..-.+.++ ++.|...+++++
T Consensus 436 vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~------------------lyi~~A~lE~~~~~d~e~Ar~ife~~L 497 (679)
T 4e6h_A 436 VYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPD------------------IYLENAYIEYHISKDTKTACKVLELGL 497 (679)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTH------------------HHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChH------------------HHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 35555666667889999999999999873332 22 66666777667654 999999999999
Q ss_pred hcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hcc
Q 035535 83 KIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 ~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p 119 (518)
+..|+++..|...+......|+.+.|...|++++ ..|
T Consensus 498 k~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~ 535 (679)
T 4e6h_A 498 KYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKIS 535 (679)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSS
T ss_pred HHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcC
Confidence 9999999988888888889999999999999999 554
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=93.19 E-value=0.74 Score=46.59 Aligned_cols=98 Identities=12% Similarity=0.048 Sum_probs=78.3
Q ss_pred HHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--
Q 035535 8 SKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE-- 85 (518)
Q Consensus 8 ~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~-- 85 (518)
.+|..++..|+|.+|+..+++.+.......+ ...+..++..-...|..++++.++...+.+|....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd------------~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~a 171 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDD------------KNLLVEVQLLESKTYHALSNLPKARAALTSARTTANA 171 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSC------------THHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhcccc------------chhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcc
Confidence 5799999999999999999999987755221 12344488999999999999999999999887543
Q ss_pred ----CC-chHHHHHHHHHHH-hccChHHHHHHHHHHHh
Q 035535 86 ----SS-HFKALLCKGKILL-SLNRYSMALDCFKETLV 117 (518)
Q Consensus 86 ----p~-~~ka~~~~g~al~-~lg~~~~A~~~~~~al~ 117 (518)
|. .+.....-|..+. ..++|..|..+|-++..
T Consensus 172 i~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf~ 209 (394)
T 3txn_A 172 IYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAFE 209 (394)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHHh
Confidence 21 2344566788899 89999999999999873
No 255
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=92.68 E-value=1.9 Score=44.87 Aligned_cols=116 Identities=11% Similarity=0.005 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhh--hhh---HHH-HHH----------------HHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETK--QEA---SQL-SKL----------------KKSLCLALSNR 61 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~--~~~---~~~-~~~----------------~~~l~~~~~nr 61 (518)
.-|...+.-+...|+.++|...|.+|+.. |.+..--. ... ++. .++ ......+|.+.
T Consensus 214 ~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y 292 (493)
T 2uy1_A 214 EVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINH 292 (493)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHH
Confidence 45777777788899999999999999999 87532000 000 000 000 01122467777
Q ss_pred HHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcc-ChHHHHHHHHHHH-hcccc
Q 035535 62 AEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLN-RYSMALDCFKETL-VDAQA 121 (518)
Q Consensus 62 a~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg-~~~~A~~~~~~al-~~p~~ 121 (518)
+....+.++.+.|...+++| ...+.....|...|..-+..+ +++.|...|+.++ ..|+.
T Consensus 293 ~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~ 353 (493)
T 2uy1_A 293 LNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDS 353 (493)
T ss_dssp HHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCC
Confidence 77777888999999999999 443345567776777777666 5999999999999 55543
No 256
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=92.15 E-value=0.88 Score=44.32 Aligned_cols=112 Identities=12% Similarity=-0.011 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH--
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL-- 82 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al-- 82 (518)
...+.|-.++..|+|++|+..|+.+|...|-.... +.++..+....+.++.--.-...+.+.+-+-.-++-.+.+
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icrEYilal~iEl~Rr~l~~~~~kR~lEL 192 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVD---DAEDEKLAHKILETAREYILGLSIELERRSLKEGNTVRMLEL 192 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBC---SSHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHH
Confidence 34568999999999999999999999988755431 2223333334443333332222233321110001222222
Q ss_pred -------hcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHH-hcc
Q 035535 83 -------KIESSHFKALLCKGK-ILLSLNRYSMALDCFKETL-VDA 119 (518)
Q Consensus 83 -------~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al-~~p 119 (518)
++.|.|.-.-++.|. ..++.++|..|....++.+ ..|
T Consensus 193 AAYFT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 193 AAYFTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHGGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 346666555455554 4578899999999999998 544
No 257
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=92.02 E-value=1.2 Score=43.33 Aligned_cols=112 Identities=12% Similarity=0.178 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccC-------HHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRD-------FDNALR 76 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~-------~~~Al~ 76 (518)
..-.+.|-.++..|+|++|+..|+.+|...|-.... +.++..+....+.++.--.-...+.+.+ .++...
T Consensus 103 ~~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~---~~~e~~e~~eli~icreYilal~iEl~Rr~l~~~~~~~~kR 179 (320)
T 3mkr_B 103 IQRLQLCYQLTTVGKFEEAVEKFRSILLSVPLLVVD---NKQEIAEAQQLITICREYIVGLSMETERKKLPKETLEQQKR 179 (320)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGCCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCCSHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhheeec---cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCchhHHH
Confidence 344578999999999999999999999988765431 2223333444444443333333333321 122222
Q ss_pred HHHHHH-----hcCCCchHHHHHHHH-HHHhccChHHHHHHHHHHHhc
Q 035535 77 DCEQAL-----KIESSHFKALLCKGK-ILLSLNRYSMALDCFKETLVD 118 (518)
Q Consensus 77 ~~~~al-----~l~p~~~ka~~~~g~-al~~lg~~~~A~~~~~~al~~ 118 (518)
.++-|- ++.|.|.-.-++.|. ..+..++|..|...-++.|..
T Consensus 180 ~lELAAYFT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel 227 (320)
T 3mkr_B 180 ICEMAAYFTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLEL 227 (320)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHT
T ss_pred HHHHHHHhccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 222221 346666555555554 457889999999999999843
No 258
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.87 E-value=0.67 Score=44.07 Aligned_cols=70 Identities=9% Similarity=-0.001 Sum_probs=58.8
Q ss_pred HHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHH
Q 035535 63 EARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFL 132 (518)
Q Consensus 63 ~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l 132 (518)
..+++.|+.++|++.+...++-+|.+.+....+.+.|.-.|+|+.|.+.++.+. ++|+.......+..++
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLV 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHH
Confidence 356788999999999999999999999999999999999999999999999999 7775544433334433
No 259
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.82 E-value=0.77 Score=47.04 Aligned_cols=102 Identities=8% Similarity=-0.070 Sum_probs=79.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKI 84 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l 84 (518)
.+..+|..+++.|++++|+..|.++......... ....+.+...+++..++|..+...+.++..+
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~---------------kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGA---------------KIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCS---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHH---------------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3567899999999999999999999887654322 1227888888899999999999999999655
Q ss_pred ---CCCc---hHHHHHHHHHHHhccChHHHHHHHHHHHhcccc
Q 035535 85 ---ESSH---FKALLCKGKILLSLNRYSMALDCFKETLVDAQA 121 (518)
Q Consensus 85 ---~p~~---~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~ 121 (518)
.++. .+.....|.++...++|.+|...|..+...++.
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~ 240 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDSLATFTS 240 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHHHHHSCC
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHhccCCc
Confidence 2221 234556788888999999999999988844433
No 260
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=91.73 E-value=0.53 Score=49.20 Aligned_cols=79 Identities=10% Similarity=0.003 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH-hccccCCcHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL-VDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~~~~~~l~~~l~~~ 135 (518)
++.++|........+..|..+|.+|+.+.|++...|..+|.+....|++-+|+-+|-+++ .....+....++..++.+.
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~ 233 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA 233 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence 566777777777889999999999999999999999999999999999999999999999 4433566667777766553
No 261
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.38 E-value=0.54 Score=51.61 Aligned_cols=59 Identities=17% Similarity=0.217 Sum_probs=51.3
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
-|..++.-+..+|+|+-|+..-++|+...|..-. .|+.+|.||.++|+|+.|+-.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~------------------tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSFE------------------SWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHH------------------HHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhH------------------HHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3555677778899999999999999999999876 9999999999999999999655444
No 262
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=90.34 E-value=2.3 Score=44.42 Aligned_cols=92 Identities=10% Similarity=0.016 Sum_probs=59.7
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
+...-..+.+.|++++|.+.|.+..... |+. ..|..+-.+|.+.|+.++|.+.+++..+
T Consensus 108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~-------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL-------------------RSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH-------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc-------------------ceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3344556667777777777777665431 221 1455666677777777777777777765
Q ss_pred cC-CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 84 IE-SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 84 l~-p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.. ..+...|..+-.+|...|+.++|.+.|++..
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr 202 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLR 202 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 43 1255667777777777777777777777765
No 263
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=89.85 E-value=1.4 Score=45.89 Aligned_cols=78 Identities=14% Similarity=-0.000 Sum_probs=70.5
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE 85 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~ 85 (518)
+...|...--+..+..|..+|.+|+.+.|.... .|..+|......|+.-+|+-+|-+++...
T Consensus 155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~------------------~~nqLavla~~~~~~l~a~y~y~rsl~~~ 216 (497)
T 1ya0_A 155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ------------------PYNQLAILASSKGDHLTTIFYYCRSIAVK 216 (497)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSH------------------HHHHHHHHHHHTTCHHHHHHHHHHHHSSS
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCc------------------hHHHHHHHHhcccccHHHHHHHHHHHhcC
Confidence 456788888888999999999999999999987 89999999999999999999999999998
Q ss_pred CCchHHHHHHHHHHHh
Q 035535 86 SSHFKALLCKGKILLS 101 (518)
Q Consensus 86 p~~~ka~~~~g~al~~ 101 (518)
..++.|.-++...+-.
T Consensus 217 ~Pf~~a~~nL~~~f~~ 232 (497)
T 1ya0_A 217 FPFPAASTNLQKALSK 232 (497)
T ss_dssp BCCHHHHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHHH
Confidence 8899999988888764
No 264
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=89.56 E-value=6 Score=40.56 Aligned_cols=104 Identities=11% Similarity=-0.012 Sum_probs=76.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh-
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK- 83 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~- 83 (518)
--...+..++..|+|.+|.........-.-... ....+..++.--...++..++|..|...+.++..
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~------------~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSM------------EMSEKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSS------------CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcc------------cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 345679999999999999999988764321111 1123344777888899999999999999998742
Q ss_pred ---cC-CCc--hHHHHHHHHHHHhccChHHHHHHHHHHHhccc
Q 035535 84 ---IE-SSH--FKALLCKGKILLSLNRYSMALDCFKETLVDAQ 120 (518)
Q Consensus 84 ---l~-p~~--~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~ 120 (518)
.. |.. ...+...|..+...++|.+|..+|..+...|.
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~ 249 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQTDA 249 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhccc
Confidence 22 222 23456788899999999999999999985443
No 265
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=89.36 E-value=2.3 Score=40.35 Aligned_cols=64 Identities=14% Similarity=0.109 Sum_probs=56.5
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCch
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHF 89 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ 89 (518)
...+++.|+.++|++.....|+..|.++. ...-+.+.+.-.|+|+.|...++.+.+++|...
T Consensus 4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~------------------~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 4 WKNALSEGQLQQALELLIEAIKASPKDAS------------------LRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp HHHHTTTTCHHHHHHHHHHHHHTCTTCHH------------------HHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCCcCHH------------------HHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 35688999999999999999999999877 666677778889999999999999999999876
Q ss_pred HH
Q 035535 90 KA 91 (518)
Q Consensus 90 ka 91 (518)
..
T Consensus 66 ~~ 67 (273)
T 1zbp_A 66 PG 67 (273)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 266
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=86.85 E-value=5.8 Score=34.90 Aligned_cols=63 Identities=10% Similarity=0.144 Sum_probs=48.9
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHH--hc---------------CCCchHHH-HHHHHHHHhccChHHHHHHHHHHH-h
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQAL--KI---------------ESSHFKAL-LCKGKILLSLNRYSMALDCFKETL-V 117 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al--~l---------------~p~~~ka~-~~~g~al~~lg~~~~A~~~~~~al-~ 117 (518)
+.+-.+.|+.++++|..|+...+..+ ++ ||.+..-+ .-+|..+..+|+-++|+.+|.... .
T Consensus 64 s~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~~Sf~~ 143 (242)
T 3kae_A 64 SKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYVRSFGK 143 (242)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhhhhcCC
Confidence 56677889999999999999999998 22 33444433 457888999999999999998877 4
Q ss_pred cc
Q 035535 118 DA 119 (518)
Q Consensus 118 ~p 119 (518)
.|
T Consensus 144 ~~ 145 (242)
T 3kae_A 144 SF 145 (242)
T ss_dssp CC
T ss_pred cc
Confidence 43
No 267
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=85.59 E-value=5.2 Score=41.67 Aligned_cols=82 Identities=10% Similarity=0.000 Sum_probs=65.6
Q ss_pred hhcHHHHHHHHHHHHHHh--hcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCchHHH
Q 035535 16 REEWKESVQVYTQFIDLC--QSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE-SSHFKAL 92 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~--p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~-p~~~ka~ 92 (518)
.++.++|.+.|.+..... |+. ..|..+-.++.+.|++++|++.+++..+.. ..+...|
T Consensus 83 ~~~l~~A~~lf~~M~~~G~~Pd~-------------------~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~ty 143 (501)
T 4g26_A 83 NPGLSRGFDIFKQMIVDKVVPNE-------------------ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSY 143 (501)
T ss_dssp CHHHHHHHHHHHHHHHTTCCCCH-------------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred cchHHHHHHHHHHHHHhCCCCCH-------------------HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccee
Confidence 345777888887765532 221 168888899999999999999999988753 2367888
Q ss_pred HHHHHHHHhccChHHHHHHHHHHH
Q 035535 93 LCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 93 ~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..+-.+|...|+.++|.+.|++..
T Consensus 144 n~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 144 GPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHCCCHHHHHHHHHHHH
Confidence 889999999999999999999987
No 268
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=85.43 E-value=5.7 Score=35.16 Aligned_cols=21 Identities=14% Similarity=-0.192 Sum_probs=13.6
Q ss_pred HHHHHhccChHHHHHHHHHHH
Q 035535 96 GKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 96 g~al~~lg~~~~A~~~~~~al 116 (518)
..+++.+|+++++++.|.+.-
T Consensus 96 f~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 96 LLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHHCC
Confidence 345667777777777776543
No 269
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=85.09 E-value=3.1 Score=43.28 Aligned_cols=91 Identities=9% Similarity=-0.096 Sum_probs=69.9
Q ss_pred HHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHhc
Q 035535 6 LRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR-DFDNALRDCEQALKI 84 (518)
Q Consensus 6 l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg-~~~~Al~~~~~al~l 84 (518)
|...+....+.++.+.|...|.+| ..|.. . .. .|...|..-+..+ +++.|...++.+++.
T Consensus 289 w~~y~~~~~r~~~~~~AR~i~~~A--~~~~~-~-----~~-----------v~i~~A~lE~~~~~d~~~ar~ife~al~~ 349 (493)
T 2uy1_A 289 RINHLNYVLKKRGLELFRKLFIEL--GNEGV-G-----PH-----------VFIYCAFIEYYATGSRATPYNIFSSGLLK 349 (493)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHH--TTSCC-C-----HH-----------HHHHHHHHHHHHHCCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHh--hCCCC-C-----hH-----------HHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence 444555555678899999999999 33431 1 11 5666666666666 599999999999999
Q ss_pred CCCchHHHHHHHHHHHhccChHHHHHHHHHH
Q 035535 85 ESSHFKALLCKGKILLSLNRYSMALDCFKET 115 (518)
Q Consensus 85 ~p~~~ka~~~~g~al~~lg~~~~A~~~~~~a 115 (518)
-|+.+..+...+.....+|+.+.|...|+++
T Consensus 350 ~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 350 HPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8988888777788788899999999999887
No 270
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=82.11 E-value=3.8 Score=41.19 Aligned_cols=62 Identities=8% Similarity=-0.102 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
..+...+..+...|++.+|+....+++..+|-+.. +|..+-.++.+.|+..+|++.|+++-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~------------------~~~~lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREP------------------LWTQLITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHH------------------HHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH------------------HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34455677788999999999999999999998765 888888999999999999998887643
No 271
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=80.61 E-value=6.2 Score=42.97 Aligned_cols=25 Identities=16% Similarity=0.133 Sum_probs=15.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.|.++|..+++.++++.|...|.++
T Consensus 683 ~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 683 KWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 5666666666666666666666554
No 272
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.60 E-value=4.9 Score=46.47 Aligned_cols=126 Identities=11% Similarity=-0.030 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHh-hcccchhh-hhhHHH---HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLC-QSQITETK-QEASQL---SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-p~~~~~~~-~~~~~~---~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.-+|..++..|++++|.++|.+|-.-. ........ .....+ ......+...|+.....+.+.+.++.+++.+..|
T Consensus 846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA 925 (1139)
T 4fhn_B 846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 925 (1139)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 568999999999999999999874211 11100000 000000 0001112346788888888999999999999999
Q ss_pred HhcCCC-ch--H--HHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHH
Q 035535 82 LKIESS-HF--K--ALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKS 135 (518)
Q Consensus 82 l~l~p~-~~--k--a~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~ 135 (518)
++..+. +. + .|.+.-+.+..+++|++|-..+. ..|+..--..-++.++.++
T Consensus 926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~---~~pd~~~r~~cLr~LV~~l 981 (1139)
T 4fhn_B 926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM---VLSTTPLKKSCLLDFVNQL 981 (1139)
T ss_dssp HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH---HHHHSSSCHHHHHHHHHHH
T ss_pred HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH---hCCCHHHHHHHHHHHHHHH
Confidence 987543 22 2 57788899999999999977664 3344444445566665543
No 273
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.95 E-value=11 Score=40.88 Aligned_cols=13 Identities=23% Similarity=0.388 Sum_probs=6.1
Q ss_pred HHHHhccCHHHHH
Q 035535 63 EARSRLRDFDNAL 75 (518)
Q Consensus 63 ~a~~~lg~~~~Al 75 (518)
.||.+.++|..+.
T Consensus 702 ~~y~~~~d~~~l~ 714 (814)
T 3mkq_A 702 EAFTNAHDLESLF 714 (814)
T ss_dssp HHHHHHTCHHHHH
T ss_pred HHHHHccChhhhH
Confidence 3444455554443
No 274
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=76.83 E-value=8.6 Score=29.62 Aligned_cols=32 Identities=22% Similarity=0.282 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+..+..+|..+-..|+|++|+.+|..||++.-
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll 47 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDLLL 47 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999998753
No 275
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=75.13 E-value=7 Score=29.92 Aligned_cols=33 Identities=12% Similarity=0.178 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
.+-.+..+|...=+.|+|++|+.+|.+||+..-
T Consensus 18 ~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 50 (83)
T 2w2u_A 18 MARKYAINAVKADKEGNAEEAITNYKKAIEVLA 50 (83)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 355677788888899999999999999998753
No 276
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=73.58 E-value=8.2 Score=29.48 Aligned_cols=32 Identities=9% Similarity=0.144 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+-.+..+|...=+.|+|++|+.+|.+||+..-
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~ 42 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEVLS 42 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999998753
No 277
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=73.46 E-value=56 Score=31.87 Aligned_cols=104 Identities=11% Similarity=0.067 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHH-HHHHHHhhcccchhhhhhHHHHHHHHHHHHHH------------HHHHHHHHhcc
Q 035535 3 MQQLRSKATELLLREEWKESVQVY-TQFIDLCQSQITETKQEASQLSKLKKSLCLAL------------SNRAEARSRLR 69 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y-~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~------------~nra~a~~~lg 69 (518)
-+.++...+.+.++++|.+|++.. +-|+.+...... ....++..++..+| .++..++....
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL~~GA~~ll~~~Q~------~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~ 108 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDILASVSQTLLRSGQG------GSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQ 108 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH------HHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSC
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHCCCc------chHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCC
Confidence 356788889999999999999974 444444332111 00111111111111 11222222222
Q ss_pred C--------HHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHH
Q 035535 70 D--------FDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCF 112 (518)
Q Consensus 70 ~--------~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~ 112 (518)
. ..+|+.+..+.=...-.++..+..+|..|...++|.+|..+|
T Consensus 109 ~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 109 PGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 1 234444444422223357889999999999999999999988
No 278
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=72.96 E-value=6.6 Score=34.79 Aligned_cols=47 Identities=13% Similarity=0.041 Sum_probs=41.2
Q ss_pred HHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 65 RSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 65 ~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
-+++|+++.|++.++.. ++..-|-++|...+..|+++-|.++|+++-
T Consensus 15 AL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp HHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 35689999999988765 567889999999999999999999999864
No 279
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=71.33 E-value=13 Score=28.94 Aligned_cols=32 Identities=19% Similarity=0.285 Sum_probs=27.4
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+-.+..+|...=..|+|++|+.+|..|+++.-
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~ 46 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDMLL 46 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 45677788888899999999999999998754
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=71.09 E-value=13 Score=28.36 Aligned_cols=32 Identities=22% Similarity=0.224 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+..+..+|...=..|+|++|+.+|..|+++.-
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~ 44 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDYLM 44 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 45667788888889999999999999998753
No 281
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=70.82 E-value=15 Score=31.70 Aligned_cols=59 Identities=7% Similarity=0.014 Sum_probs=48.9
Q ss_pred HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchH
Q 035535 14 LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSHFK 90 (518)
Q Consensus 14 ~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~k 90 (518)
...+|.++|.+.|+.++.+....+ .+|...|.--.+.|+...|.+.+.+|+.+.|....
T Consensus 71 ~ei~D~d~aR~vy~~a~~~hKkFA------------------Kiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~ 129 (161)
T 4h7y_A 71 KAIQEPDDARDYFQMARANCKKFA------------------FVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE 129 (161)
T ss_dssp HHHHCGGGCHHHHHHHHHHCTTBH------------------HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred HHhcCHHHHHHHHHHHHHHhHHHH------------------HHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence 455899999999999998743332 28888999999999999999999999999986443
No 282
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=70.31 E-value=12 Score=30.55 Aligned_cols=32 Identities=22% Similarity=0.283 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+..+..+|...=..|+|++|+.+|..|+++.-
T Consensus 18 Ai~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~ 49 (117)
T 2cpt_A 18 AIDLASKAAQEDKAGNYEEALQLYQHAVQYFL 49 (117)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 45567777778889999999999999998753
No 283
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=68.51 E-value=4.8 Score=30.05 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=27.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhccc
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQI 37 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~ 37 (518)
...|..+..+|++++|+.++.+||..+|.-.
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~ 51 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQ 51 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHH
Confidence 4689999999999999999999999988743
No 284
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology, poly-proline, proline-tryptophan interaction, metal binding protein; NMR {Homo sapiens}
Probab=67.41 E-value=2.8 Score=30.28 Aligned_cols=38 Identities=11% Similarity=0.031 Sum_probs=14.1
Q ss_pred ccCCCCcEEEEeccceecc---cc---C------CCCCCchhHhHHhHHH
Q 035535 187 KNVEAGTLFLVTKAIATER---GI---L------SGENSNENEQLVMWKN 224 (518)
Q Consensus 187 ~~i~~GelIl~e~p~~~~~---~~---~------~~~~~~~~~~~~~~~~ 224 (518)
++|.+||+|+.++|....- +. . ...||+..+|...|..
T Consensus 2 ~~~~~G~~il~~~~~~~~C~~C~~~~~~~Cs~C~~~~YCs~~CQ~~~W~~ 51 (64)
T 2odd_A 2 NLYFQGENLYFQGDSSESCWNCGRKASETCSGCNTARYCGSFCQHKDWEK 51 (64)
T ss_dssp -------------CCSSSCTTTSSCCCEEETTTSCCEESSHHHHHHHHHH
T ss_pred CcCCCCCEEeeCCCCCCcCccccCCCcccCCCCCChhhCCHHHHHHHHHH
Confidence 5799999999999854211 00 0 0117888999999984
No 285
>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}
Probab=63.81 E-value=4 Score=35.15 Aligned_cols=28 Identities=11% Similarity=0.141 Sum_probs=20.7
Q ss_pred CceEEee-cCCCccEEEEeccCCCCcEEE
Q 035535 169 GAVQISK-SEISGRGLFATKNVEAGTLFL 196 (518)
Q Consensus 169 ~~~~i~~-~~~~Grg~~a~~~i~~GelIl 196 (518)
..++++. .++.|.||||++.|++|+.+-
T Consensus 23 ~~l~l~~S~~~~g~GVfa~~~Ip~G~~fG 51 (151)
T 3db5_A 23 KQLVLRQSIVGAEVGVWTGETIPVRTCFG 51 (151)
T ss_dssp TTEEEEECC---CEEEEESSCBCTTCEEC
T ss_pred CCeEEEEccCCCceEEEEecccCCCCEEE
Confidence 3477776 468899999999999998874
No 286
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=61.36 E-value=62 Score=36.73 Aligned_cols=93 Identities=6% Similarity=-0.039 Sum_probs=73.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHH-----hhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDL-----CQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCE 79 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~-----~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~ 79 (518)
.+...-+.+.+.|+.++|...+.+.-+. .|+. ..|.-+-..|.+.|++++|++.++
T Consensus 129 TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdv-------------------vTYNtLI~Glck~G~~~eA~~Lf~ 189 (1134)
T 3spa_A 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTL-------------------DMYNAVMLGWARQGAFKELVYVLF 189 (1134)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCH-------------------HHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCH-------------------hHHHHHHHHHHhCCCHHHHHHHHH
Confidence 3556667889999999999999765432 2332 167888889999999999999999
Q ss_pred HHHhcC-CCchHHHHHHHHHHHhccCh-HHHHHHHHHHH
Q 035535 80 QALKIE-SSHFKALLCKGKILLSLNRY-SMALDCFKETL 116 (518)
Q Consensus 80 ~al~l~-p~~~ka~~~~g~al~~lg~~-~~A~~~~~~al 116 (518)
+..+.. ..+.-.|..+-.++...|+. ++|.+.|++..
T Consensus 190 eM~~~G~~PDvvTYntLI~glcK~G~~~e~A~~Ll~EM~ 228 (1134)
T 3spa_A 190 MVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMS 228 (1134)
T ss_dssp HHHHTTCCCCHHHHHHHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHcCCCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 998754 23677788888889898885 78889998877
No 287
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=60.47 E-value=1.2e+02 Score=29.28 Aligned_cols=27 Identities=19% Similarity=-0.084 Sum_probs=24.6
Q ss_pred CchHHHHHHHHHHHhccChHHHHHHHH
Q 035535 87 SHFKALLCKGKILLSLNRYSMALDCFK 113 (518)
Q Consensus 87 ~~~ka~~~~g~al~~lg~~~~A~~~~~ 113 (518)
.++..+..+|..|...+++.+|..+|-
T Consensus 132 Gdp~LH~~~a~~~~~e~~~~~A~~H~i 158 (312)
T 2wpv_A 132 GDPYLHNTIGSKLLEGDFVYEAERYFM 158 (312)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhhcCCHHHHHHHHH
Confidence 578899999999999999999999885
No 288
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=60.34 E-value=9.3 Score=30.03 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=27.3
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcc
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQ 36 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~ 36 (518)
...|..++.+|+++.|+.+|.+||..+|.-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 468999999999999999999999998774
No 289
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=59.14 E-value=12 Score=29.11 Aligned_cols=27 Identities=19% Similarity=0.410 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 90 KALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 90 ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..+-|++..+..-|+|++|+++.+++.
T Consensus 16 H~~~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 16 HQQSRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHhhhHHHHHHhcCCHHHHHHHHHHHH
Confidence 344566667777777777766666655
No 290
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=58.81 E-value=20 Score=27.58 Aligned_cols=51 Identities=24% Similarity=0.326 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHHhccChHHHHHHHHHHHhccccCCcHHHHHHHHHHHHHH
Q 035535 88 HFKALLCKGKILLSLNRYSMALDCFKETLVDAQASGSLETVNGFLEKSKKL 138 (518)
Q Consensus 88 ~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~~~~~~~l~~~l~~~~~~ 138 (518)
....+...|.-++..++|.+|...|+++..+.+++...+-..-.++.|++.
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~ten~~i~ki~~fyl~ec~kk 102 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSDNEEIKKIASFYLEECRKK 102 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHccccCHHHHHHHHHHHHHHHHH
Confidence 455667778889999999999999999985544554444444566666653
No 291
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=55.78 E-value=32 Score=35.81 Aligned_cols=67 Identities=13% Similarity=0.008 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHhcCC--C---chHHHHHHHHHHHhccChHHHHHHHHHHH-hccccC
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALKIES--S---HFKALLCKGKILLSLNRYSMALDCFKETL-VDAQAS 122 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~l~p--~---~~ka~~~~g~al~~lg~~~~A~~~~~~al-~~p~~~ 122 (518)
.++.-+-..|+..+.|+.|.....++.-..+ . ...-+|..|+++...++|.+|.++|..|+ .-|.+.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 3555566778889999999999999853322 1 24567889999999999999999999999 566544
No 292
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=52.05 E-value=29 Score=37.03 Aligned_cols=51 Identities=10% Similarity=-0.061 Sum_probs=32.0
Q ss_pred HhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 66 SRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 66 ~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++.|++..|...+.+.-.-.+...++.|-+|+++..+|+.++|...|+++.
T Consensus 296 lr~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a 346 (618)
T 1qsa_A 296 LGTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLM 346 (618)
T ss_dssp HHHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 345677777666655444333446666677777777777777777666665
No 293
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=50.39 E-value=24 Score=27.42 Aligned_cols=29 Identities=17% Similarity=0.241 Sum_probs=24.5
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHh
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLC 33 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~ 33 (518)
..-.++..+.+.|+|++||++..+|..+.
T Consensus 17 ~~~RrAe~ll~~gkydeAIech~kAa~yL 45 (97)
T 2crb_A 17 QQSRRADRLLAAGKYEEAISCHRKATTYL 45 (97)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HhhhHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 34457899999999999999999998664
No 294
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=49.41 E-value=51 Score=26.75 Aligned_cols=71 Identities=15% Similarity=0.109 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccc----hhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQSQIT----ETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNAL 75 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~----~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al 75 (518)
.+.++|-..=..|+-++|+++|++.|...-.-.. .+..+.+.+++-.++......|+..+.-+++..+...
T Consensus 24 ~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~RL~~Le~~~ 98 (116)
T 2dl1_A 24 LFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTRLEILEKGL 98 (116)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 4455555555678888888888888765322111 0112233444445555556677777777776555433
No 295
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=48.04 E-value=1.4e+02 Score=26.26 Aligned_cols=55 Identities=9% Similarity=0.001 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.-.-.+..++-.|+|..|+-.+. +-+..-+.|..+.||..+.+|..|+.++++.+
T Consensus 35 Y~lL~~I~LyyngEY~R~Lf~L~-----~lNT~Ts~YYk~LCy~klKdYkkA~~~le~il 89 (242)
T 3kae_A 35 YRMLMSIVLYLNGEYTRALFHLH-----KLNTCTSKYYESLCYKKKKDYKKAIKSLESIL 89 (242)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHH-----TCCBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHhhhhhhhhhcchHhHHHHHHH-----hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34456777888999999886442 23457788999999999999999999999999
No 296
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=45.57 E-value=67 Score=27.24 Aligned_cols=36 Identities=17% Similarity=0.040 Sum_probs=30.5
Q ss_pred HhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHh
Q 035535 82 LKIESSHFKALLCKGKILLSLNRYSMALDCFKETLV 117 (518)
Q Consensus 82 l~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~ 117 (518)
+.-++-++..++.+|.+|..+|+..+|.+.+++|-.
T Consensus 118 l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 118 LKNNEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp C--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 344566799999999999999999999999999883
No 297
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=45.47 E-value=2.4e+02 Score=28.00 Aligned_cols=31 Identities=10% Similarity=-0.041 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
+.+.+.|..+.+.|++++-.+..+......+
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 50 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTRPFLS 50 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGG
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 4677889999999999998888866654443
No 298
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=44.24 E-value=27 Score=28.42 Aligned_cols=62 Identities=13% Similarity=0.147 Sum_probs=35.9
Q ss_pred CHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHHhcccc-----CCcHHHHHHHHHHHHHHH
Q 035535 70 DFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETLVDAQA-----SGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 70 ~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al~~p~~-----~~~~~~l~~~l~~~~~~~ 139 (518)
.|++|..+..+||.+|-. |.--..+.-|.+.++.|.+++..|-+ ...++....+.+++++-.
T Consensus 18 ~h~~AF~~Is~AL~~DE~--------g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL 84 (116)
T 2dl1_A 18 AYKKAFLFVNKGLNTDEL--------GQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETL 84 (116)
T ss_dssp HHHHHHHHHHHHHHHHHH--------TCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhhc--------CCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHH
Confidence 477788888888887642 22333344455566666777732221 345566666666665543
No 299
>2vkj_A TM1634; membrane protein, TPR motif joint center for structural GENO JCSG, structural genomics; 1.65A {Thermotoga maritima} PDB: 2vko_A*
Probab=44.06 E-value=78 Score=24.34 Aligned_cols=33 Identities=12% Similarity=0.328 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhh
Q 035535 2 LMQQLRSKATELLLREEWKESVQVYTQFIDLCQ 34 (518)
Q Consensus 2 ~a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p 34 (518)
.+..+...|..+|+.++|.+|...++++..+..
T Consensus 52 ~~r~~i~eak~~y~~~ny~ea~~l~~k~~n~te 84 (106)
T 2vkj_A 52 KARSLIAEGKDLFETANYGEALVFFEKALNLSD 84 (106)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHcccc
Confidence 356778899999999999999999999987643
No 300
>3t5v_B Nuclear mRNA export protein THP1; PCI, mRNA nuclear export, mRNA, nuclear, transcription; 2.90A {Saccharomyces cerevisiae}
Probab=43.97 E-value=81 Score=32.18 Aligned_cols=102 Identities=8% Similarity=0.033 Sum_probs=65.7
Q ss_pred hhcHHHHHHHHHHHHHHhhcccchhh-hh-hHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC--------
Q 035535 16 REEWKESVQVYTQFIDLCQSQITETK-QE-ASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIE-------- 85 (518)
Q Consensus 16 ~g~~~~Ai~~y~~Al~~~p~~~~~~~-~~-~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~-------- 85 (518)
....++|.....++....-++-.++. .+ |+ + +........++-.+|+++++..-|...+...-...
T Consensus 139 ~~~le~~a~~i~k~F~~cl~Dr~~~~~~s~p~---k-k~~~l~l~n~L~kiYFkl~~~~lckni~k~i~~~~~~p~~~~~ 214 (455)
T 3t5v_B 139 HQFLSHISSILSRLFNSIKPPRGNASSTNIPG---K-QRILLYLVNKLNNIYFRIESPQLCSNIFKNFQPKSMLAHFNEY 214 (455)
T ss_dssp THHHHHHHHHHHHHHHHCCCC----CCSSCCH---H-HHHHHHHHHHHHHHHHHSSCCTTHHHHHHTHHHHCCCSCGGGS
T ss_pred hhHHHHHHHHHHHHHHHhcccCCCcccccccc---c-chhHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCcChhhC
Confidence 34578888888888887644332111 11 11 1 11222245556689999999887776664332211
Q ss_pred C--CchHHHHHHHHHHHhccChHHHHHHHHHHH-h-cccc
Q 035535 86 S--SHFKALLCKGKILLSLNRYSMALDCFKETL-V-DAQA 121 (518)
Q Consensus 86 p--~~~ka~~~~g~al~~lg~~~~A~~~~~~al-~-~p~~ 121 (518)
| ..+.-+|.+|+.+...++|.+|.++|..|. . -|..
T Consensus 215 p~~q~v~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~lcp~~ 254 (455)
T 3t5v_B 215 QLDQQIEYRYLLGRYYLLNSQVHNAFVQFNEAFQSLLNLP 254 (455)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCC
T ss_pred CccceEeeeHHHHHHHHHHccHHHHHHHHHHHHHhcCCcc
Confidence 1 124567899999999999999999999999 5 5654
No 301
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=40.67 E-value=11 Score=28.38 Aligned_cols=19 Identities=21% Similarity=0.270 Sum_probs=15.9
Q ss_pred EEEEcCCCCCCCeEEeecC
Q 035535 337 IVHASRDVKAGEEITFAYF 355 (518)
Q Consensus 337 ~v~A~rdI~~Geeit~sY~ 355 (518)
.|+|.+||++||.||-.=+
T Consensus 8 slvA~rdI~~Gevit~~dl 26 (79)
T 1wvo_A 8 SVVAKVKIPEGTILTMDML 26 (79)
T ss_dssp EEEESSCBCTTCBCCGGGE
T ss_pred EEEEeCccCCCCCcCHHHe
Confidence 6889999999999886543
No 302
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=37.95 E-value=1.9e+02 Score=24.78 Aligned_cols=58 Identities=7% Similarity=-0.006 Sum_probs=46.0
Q ss_pred HHHHHHHHhccCHHHHHHHHHHHHhcCCCc------hHHHHH-HHHHHHh--ccChHHHHHHHHHHH
Q 035535 59 SNRAEARSRLRDFDNALRDCEQALKIESSH------FKALLC-KGKILLS--LNRYSMALDCFKETL 116 (518)
Q Consensus 59 ~nra~a~~~lg~~~~Al~~~~~al~l~p~~------~ka~~~-~g~al~~--lg~~~~A~~~~~~al 116 (518)
+..+..++..|+|-+|-+.++.+-.-.+.. .+++.. +|.+++. .|+..-|...+.+++
T Consensus 36 ~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 36 VVHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 456777888899999999999998776543 556666 6666554 599999999999998
No 303
>1wvo_A Sialic acid synthase; antifreeze protein like domain, N-acetylneuraminic acid phosphate synthase, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=36.65 E-value=15 Score=27.76 Aligned_cols=21 Identities=19% Similarity=0.284 Sum_probs=17.3
Q ss_pred CCccEEEEeccCCCCcEEEEe
Q 035535 178 ISGRGLFATKNVEAGTLFLVT 198 (518)
Q Consensus 178 ~~Grg~~a~~~i~~GelIl~e 198 (518)
..++.++|+++|++||+|-.+
T Consensus 4 ~~rrslvA~rdI~~Gevit~~ 24 (79)
T 1wvo_A 4 GSSGSVVAKVKIPEGTILTMD 24 (79)
T ss_dssp CCCCEEEESSCBCTTCBCCGG
T ss_pred cccEEEEEeCccCCCCCcCHH
Confidence 456899999999999887544
No 304
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=36.55 E-value=45 Score=33.67 Aligned_cols=60 Identities=17% Similarity=0.151 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC---CCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIE---SSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~---p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++..+|.-|++.|++++|++.+.++...- ..-...++...+++...++|..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 56688999999999999999999987653 2346678888889999999999999999987
No 305
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=36.36 E-value=1.5e+02 Score=25.48 Aligned_cols=70 Identities=16% Similarity=0.064 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHH-HHHHHHHHhccCHHHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLAL-SNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~-~nra~a~~~lg~~~~Al~~~~~al 82 (518)
..-...|..+|..|+|-+|-+.++.+-...+.... + ..+.+ .++. .-.|..+++.|+...|...+.+|+
T Consensus 33 ~~~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~------e--r~~lq--GLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 33 RRAVVHGVRLYNSGEFHESHDCFEDEWYNYGRGNT------E--SKFLH--GMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSSH------H--HHHHH--HHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHhCCCchHHHHHHHHHHHhcCCCch------H--HHHHH--HHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 34466899999999999999999988876543211 0 11111 2244 445666777899999999998887
Q ss_pred h
Q 035535 83 K 83 (518)
Q Consensus 83 ~ 83 (518)
.
T Consensus 103 ~ 103 (161)
T 2ijq_A 103 Q 103 (161)
T ss_dssp H
T ss_pred H
Confidence 6
No 306
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=35.94 E-value=45 Score=35.82 Aligned_cols=49 Identities=20% Similarity=0.191 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLR 69 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg 69 (518)
++.+..+|..++..|+|.-|.+..+.++..+|++.. +..-+|.+|.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~------------------a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRA------------------ARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH------------------HHHHHHHHHHHHH
Confidence 466788999999999999999999999999999876 6666777776655
No 307
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=33.65 E-value=1.4e+02 Score=22.38 Aligned_cols=12 Identities=25% Similarity=0.022 Sum_probs=6.2
Q ss_pred HHHHHHHHHHhc
Q 035535 73 NALRDCEQALKI 84 (518)
Q Consensus 73 ~Al~~~~~al~l 84 (518)
.|++.+.+|++.
T Consensus 10 ~Ai~lv~~Ave~ 21 (83)
T 2v6y_A 10 MARKYAILAVKA 21 (83)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 455555555444
No 308
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=31.04 E-value=88 Score=35.19 Aligned_cols=96 Identities=11% Similarity=-0.091 Sum_probs=56.4
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHh-hcccc--hhhhhhHHH--HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLC-QSQIT--ETKQEASQL--SKLKKSLCLALSNRAEARSRLRDFDNALRDCEQA 81 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~-p~~~~--~~~~~~~~~--~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~a 81 (518)
.-+|..++..|++++|.++|.+|-.-. ..... .......-+ ......+...|.+.+..+-+.+-|+-+++.++.|
T Consensus 844 yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lA 923 (950)
T 4gq2_M 844 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA 923 (950)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 568999999999999999999874221 11100 000000000 0011123347777888888888888888888888
Q ss_pred Hhc-CCCchH----HHHHHHHHHHhc
Q 035535 82 LKI-ESSHFK----ALLCKGKILLSL 102 (518)
Q Consensus 82 l~l-~p~~~k----a~~~~g~al~~l 102 (518)
|+. ++++.. .|.++-++...+
T Consensus 924 I~~~~~dd~~l~~~l~~r~f~~a~a~ 949 (950)
T 4gq2_M 924 DASKETDDEDLSIAITHETLKTACAA 949 (950)
T ss_dssp HHTCCSCCHHHHHHHHHHHHHHHHHH
T ss_pred HhhcccCCccchHHHHHHHHHHHhhC
Confidence 864 344433 444544444433
No 309
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=30.99 E-value=57 Score=36.71 Aligned_cols=52 Identities=23% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 61 RAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 61 ra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
+...++..+.++-|. ..+..-|.++-.-|-+|++|+..|++++|.++|++|.
T Consensus 816 l~~~L~~~~~~~~a~----eL~~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACM----QLIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHH----HHGGGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHH----HHHhhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 344556677776543 4556667777778999999999999999999999987
No 310
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=29.42 E-value=72 Score=34.23 Aligned_cols=50 Identities=14% Similarity=0.058 Sum_probs=44.5
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChH
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYS 106 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~ 106 (518)
....+|...+..|+|.-|.+.++.++..+|+|..|...++.+|.++|.-.
T Consensus 451 ~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~~~~ 500 (658)
T 2cfu_A 451 RLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLGYQA 500 (658)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHhc
Confidence 46678888889999999999999999999999999999999999988544
No 311
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=28.39 E-value=57 Score=24.47 Aligned_cols=31 Identities=16% Similarity=0.204 Sum_probs=26.0
Q ss_pred HHHHHHHHHHhhhcHHHHHHHHHHHHHHhhc
Q 035535 5 QLRSKATELLLREEWKESVQVYTQFIDLCQS 35 (518)
Q Consensus 5 ~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~ 35 (518)
+-...|..+...|+|+.|+.+|+.++..-..
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k 44 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQMNK 44 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHHHHH
Confidence 4456888999999999999999999986544
No 312
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=28.21 E-value=2.6e+02 Score=28.09 Aligned_cols=71 Identities=4% Similarity=0.016 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 3 MQQLRSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 3 a~~l~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
++-+..+...++..++|..|...++++....-.... .+ ......+.-.|..+...++|.+|-.+|..++
T Consensus 177 ve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~----~~-------~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 177 IQFILEQMELSILKGDYSQATVLSRKILKKTFKNPK----YE-------SLKLEYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSC----CH-------HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCC----cH-------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 445566777889999999999999998543211111 01 1223366777888899999999999988887
Q ss_pred hc
Q 035535 83 KI 84 (518)
Q Consensus 83 ~l 84 (518)
..
T Consensus 246 ~~ 247 (445)
T 4b4t_P 246 QT 247 (445)
T ss_dssp HH
T ss_pred hc
Confidence 54
No 313
>2o8p_A 14-3-3 domain containing protein; signaling protein, 14-3-3, cell regulator protein, cryptospo parvum, structural genomics; HET: MSE; 1.82A {Cryptosporidium parvum} SCOP: a.118.7.1
Probab=27.80 E-value=3.5e+02 Score=24.61 Aligned_cols=60 Identities=13% Similarity=0.019 Sum_probs=39.4
Q ss_pred HhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHH-hccCHHHHHHHHHHHHh
Q 035535 14 LLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARS-RLRDFDNALRDCEQALK 83 (518)
Q Consensus 14 ~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~-~lg~~~~Al~~~~~al~ 83 (518)
|..|+-+.|...|+.|.++......++.+ .. |. +..|.+.-|+ -+++.++|...+.+|+.
T Consensus 136 ~~~g~~e~a~~aY~~A~~iA~~~L~pthP-ir--------LG-LaLNfSVFyYEIln~p~~Ac~lAk~Afd 196 (227)
T 2o8p_A 136 FGLCSLEDSKKIHQDAFTLLCEHPDKIEQ-LP--------LG-FIQNLAYILSEKYGEKKQVFNMLNSLGK 196 (227)
T ss_dssp TTSSCHHHHHHHHHHHHHHHHHCGGGGGG-SC--------HH-HHHHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred HccccHHHHHHHHHHHHHHHHhhCCCCCh-HH--------HH-HHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 35666789999999999876443221111 00 11 4556666554 57899999999999966
No 314
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=27.66 E-value=1.8e+02 Score=22.41 Aligned_cols=63 Identities=17% Similarity=0.138 Sum_probs=38.8
Q ss_pred HHHHHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 7 RSKATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 7 ~~~Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
...|..+|..|+|-+|-+.++.+-...|.. . .+..+ .++..-.|..+.+.|+. |...+.+++.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~-~---------~~~~q--GLIq~Ava~~h~~~gn~--a~~ll~~a~~ 67 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGE-E---------RRLLQ--GVILLAAALHQRRLGRP--GLRNLRKAEA 67 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHH-H---------HHHHH--HHHHHHHHHHHHHTTCC--CHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCc-h---------HHHHH--HHHHHHHHHHHHHcCcH--HHHHHHHHHH
Confidence 357889999999999999999988766431 1 11111 11333334444555665 6666666654
No 315
>3dza_A Uncharacterized putative membrane protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=27.65 E-value=1.1e+02 Score=27.16 Aligned_cols=69 Identities=10% Similarity=0.015 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHhhhcHHHHHHHHHHHH-HHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHH
Q 035535 4 QQLRSKATELLLREEWKESVQVYTQFI-DLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQAL 82 (518)
Q Consensus 4 ~~l~~~Gn~~~~~g~~~~Ai~~y~~Al-~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al 82 (518)
......+|..++.|+...|++.++-+= .++-.....|-... .-..++|..++..|+|.+|-..+..+.
T Consensus 109 ~aAI~~AN~~Lk~Gd~~~A~~~LklAgvdv~~~~allPL~qT-----------~~~V~~A~~ll~~gk~yeAn~aLk~Ae 177 (191)
T 3dza_A 109 ESAIQSANEKLAKGDQKGAIDTLRLAGIGVIENQYLMPLNQT-----------RKAVAQSQELLKAGKYYEANLVLKGAE 177 (191)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHTTCEEEEEEEEEEHHHH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHcCCchhhhhhhCChHhH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 455678999999999999998876551 11111111111111 156789999999999999888877775
Q ss_pred h
Q 035535 83 K 83 (518)
Q Consensus 83 ~ 83 (518)
.
T Consensus 178 d 178 (191)
T 3dza_A 178 E 178 (191)
T ss_dssp H
T ss_pred c
Confidence 4
No 316
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=26.77 E-value=25 Score=19.52 Aligned_cols=14 Identities=57% Similarity=0.928 Sum_probs=9.4
Q ss_pred hhhhhHHhHHhhHh
Q 035535 501 GLYGKLVKKQALKS 514 (518)
Q Consensus 501 ~~~~~~~~~~~~~~ 514 (518)
++|||.+||-+-++
T Consensus 1 glfgklikkfgrka 14 (26)
T 2g9p_A 1 GLFGKLIKKFGRKA 14 (26)
T ss_dssp CHHHHHHHHHTSHH
T ss_pred CcHHHHHHHHhHHH
Confidence 46788888755544
No 317
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=24.76 E-value=1.1e+02 Score=30.85 Aligned_cols=27 Identities=22% Similarity=0.041 Sum_probs=18.8
Q ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 57 ALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 57 ~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
++.-+|.+|+.+++|++|++.+++++.
T Consensus 192 a~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 192 ARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 566667777777777777777777664
No 318
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=24.74 E-value=58 Score=37.45 Aligned_cols=53 Identities=21% Similarity=0.244 Sum_probs=40.4
Q ss_pred HHHHHHHhccCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 60 NRAEARSRLRDFDNALRDCEQALKIESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~~~al~l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
.+...+++.+.++-|.+ .+..-|.++-.-|-+|.+++..|++++|.++|+++.
T Consensus 817 ~l~~~l~~~~~~~~~~~----l~~~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa 869 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQ----LIGWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTS 869 (1139)
T ss_dssp HHHHHHHHHSCTTHHHH----HHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHHhhhHHHHHH----HhhhccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 34445666777765543 344556677777999999999999999999999986
No 319
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=23.32 E-value=1.2e+02 Score=31.58 Aligned_cols=66 Identities=8% Similarity=-0.005 Sum_probs=48.7
Q ss_pred HHHHHhhhcHHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCc
Q 035535 10 ATELLLREEWKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALKIESSH 88 (518)
Q Consensus 10 Gn~~~~~g~~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~l~p~~ 88 (518)
-..|+..+.|++|....+++. .|....+ + ...+..++-.|.++.-.++|.+|.+++..|+..-|.+
T Consensus 238 LRnYL~~~~y~qA~~lvsk~~--fP~~~~s---n--------~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~ 303 (523)
T 4b4t_S 238 LRDFLNNGEVDSASDFISKLE--YPHTDVS---S--------SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHN 303 (523)
T ss_dssp HHHHHHSSCSTTHHHHHHHHC--SCTTTSC---H--------HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCS
T ss_pred HHHHHccCcHHHHHHHHhcCc--CCcccCC---H--------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcc
Confidence 344667788888988888884 4432110 1 1134478889999999999999999999999987754
No 320
>3ihx_A PR domain zinc finger protein 10; PRDM10, methyltransferase, structural genomics, structural G consortium, SGC, DNA-binding, metal-binding, nucleus; 2.50A {Homo sapiens}
Probab=23.22 E-value=41 Score=28.78 Aligned_cols=24 Identities=21% Similarity=0.328 Sum_probs=18.9
Q ss_pred ceEEeecCCCccEEEEeccCCCCcEEE
Q 035535 170 AVQISKSEISGRGLFATKNVEAGTLFL 196 (518)
Q Consensus 170 ~~~i~~~~~~Grg~~a~~~i~~GelIl 196 (518)
.++|+. .|.||||++.|++|+.+-
T Consensus 24 ~L~i~~---~g~GVfA~~~IpkGt~fG 47 (152)
T 3ihx_A 24 VLYIDR---FLGGVFSKRRIPKRTQFG 47 (152)
T ss_dssp TEEECT---TTCSEEESSCBCSSCEEC
T ss_pred ceEEee---cCCeEEECceecCCCEEE
Confidence 355554 479999999999998764
No 321
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=23.17 E-value=1.2e+02 Score=30.63 Aligned_cols=55 Identities=16% Similarity=0.195 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHh
Q 035535 19 WKESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSRLRDFDNALRDCEQALK 83 (518)
Q Consensus 19 ~~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~lg~~~~Al~~~~~al~ 83 (518)
|+.-+.-++.|+...|........+ ...++.-+|.+++.+++|++|+..+++++.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~~gr~t----------k~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFNKGKVN----------RWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCCTTSCC----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccCCCeee----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 4455556666666665432211111 123677777788888888888888887775
No 322
>3re2_A Predicted protein; menin, multiple endocrine neoplasia 1, tumor suppressor, MIX lineage leukemia, unknown function; 1.95A {Nematostella vectensis}
Probab=22.71 E-value=3.7e+02 Score=26.47 Aligned_cols=43 Identities=14% Similarity=0.188 Sum_probs=33.8
Q ss_pred HHHHHHHHHhc-----CCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 74 ALRDCEQALKI-----ESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 74 Al~~~~~al~l-----~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
++..+.+|+.. +..|.-.|..+|-.+++.++|.+|++++-.|-
T Consensus 276 ~l~L~~~AI~sa~~yY~n~HvYPYtylgGy~yR~~~~reAl~~WA~Aa 323 (472)
T 3re2_A 276 AEELFKEAITVAKREYSDHHIYPYTYLGGYYYRKKKYYEAIASWVDAG 323 (472)
T ss_dssp HHHHHHHHHHHHHHHSTTCCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCCccchhhhhhhhhhcchHHHHHHHHHHHH
Confidence 55556666543 34567778889999999999999999998876
No 323
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=21.88 E-value=1.1e+02 Score=23.17 Aligned_cols=19 Identities=11% Similarity=0.118 Sum_probs=7.8
Q ss_pred HHHHHHHhccCHHHHHHHH
Q 035535 60 NRAEARSRLRDFDNALRDC 78 (518)
Q Consensus 60 nra~a~~~lg~~~~Al~~~ 78 (518)
.+|.-.-+.|+|.+|+..|
T Consensus 24 ~~Ave~D~~g~y~eAl~lY 42 (83)
T 2w2u_A 24 INAVKADKEGNAEEAITNY 42 (83)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHH
Confidence 3333333444444444433
No 324
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=21.73 E-value=4.7e+02 Score=29.73 Aligned_cols=60 Identities=3% Similarity=-0.291 Sum_probs=51.6
Q ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHh-----cCCCchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 56 LALSNRAEARSRLRDFDNALRDCEQALK-----IESSHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 56 ~~~~nra~a~~~lg~~~~Al~~~~~al~-----l~p~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
..|.-+-.++.+.|+.++|.+.++...+ ..| +...|..+-..|...|+.++|.+.|++..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~P-dvvTYNtLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL-TLDMYNAVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCC-CHhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3677788899999999999999977543 344 77889999999999999999999999987
No 325
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.64 E-value=1.2e+02 Score=29.33 Aligned_cols=49 Identities=18% Similarity=0.359 Sum_probs=36.4
Q ss_pred HHHHHHHHHHhccChHHHHHHHHHHH-hcc----ccCCcHHHHHHHHHHHHHHH
Q 035535 91 ALLCKGKILLSLNRYSMALDCFKETL-VDA----QASGSLETVNGFLEKSKKLE 139 (518)
Q Consensus 91 a~~~~g~al~~lg~~~~A~~~~~~al-~~p----~~~~~~~~l~~~l~~~~~~~ 139 (518)
..+..|.-+...|++++|+..|+.++ ..| ++.+...++.+++..|++..
T Consensus 116 ~~Lk~gyk~~t~gKf~eAl~~Fr~iL~~i~l~~v~~~~e~~e~~eli~icrEYi 169 (325)
T 3mv2_A 116 EKMNEGYKNFKLNKPDIAIECFREAIYRITLLMVDDAEDEKLAHKILETAREYI 169 (325)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCCBCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeeccHHHHHHHHHHHHHHHHHH
Confidence 34677888899999999999999998 443 33344566777777777654
No 326
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=21.44 E-value=1.3e+02 Score=30.27 Aligned_cols=46 Identities=20% Similarity=0.270 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhcCC--------CchHHHHHHHHHHHhccChHHHHHHHHHHH
Q 035535 71 FDNALRDCEQALKIES--------SHFKALLCKGKILLSLNRYSMALDCFKETL 116 (518)
Q Consensus 71 ~~~Al~~~~~al~l~p--------~~~ka~~~~g~al~~lg~~~~A~~~~~~al 116 (518)
|+..++|++.|+..=| +..-|+..+|++|+..++|++|.+..++++
T Consensus 164 y~~I~~DL~~A~~~L~~~~~~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi 217 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKNNGRMNKYAARALLARIYLYHDDNRKAFDLADQLI 217 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCCTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccccccCCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHH
Confidence 5678889999987643 235578889999999999999999888777
No 327
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=21.19 E-value=84 Score=23.87 Aligned_cols=37 Identities=14% Similarity=0.115 Sum_probs=28.3
Q ss_pred CCCCCCceEEeeCCEEEEEEcCCC--------------CCCCeEEeecCCC
Q 035535 321 HSCSPNARRVHVGDYIIVHASRDV--------------KAGEEITFAYFDM 357 (518)
Q Consensus 321 HsC~PN~~~~~~~~~~~v~A~rdI--------------~~Geeit~sY~~~ 357 (518)
||+.|-...++..+.+.|++-++| -++|+++.||-+.
T Consensus 1 ~~~~~~~VKV~~~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~~ 51 (83)
T 1oey_A 1 GSHMAYTLKVHYKYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRPR 51 (83)
T ss_dssp CCSSCEEEEEESSSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECCT
T ss_pred CCCCcEEEEEEEEEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeCC
Confidence 677775555555689999998887 3489999999875
No 328
>2npm_A 14-3-3 domain containing protein; cell regulator protein 14-3-3, struc genomics, structural genomics consortium, SGC, protein BIND; HET: SEP; 2.52A {Cryptosporidium parvum}
Probab=20.91 E-value=2.1e+02 Score=26.63 Aligned_cols=53 Identities=13% Similarity=0.186 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHh
Q 035535 20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALK 83 (518)
Q Consensus 20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~ 83 (518)
+.|...|++|+++. ....++.+ . .+ . +..|.+.-|+. +++.++|...+.+|+.
T Consensus 173 e~a~~aY~~A~~iA-~~L~pthP-i----rL----G-LaLNfSVFyYEiln~~~~Ac~lAk~Afd 226 (260)
T 2npm_A 173 EDALKAYKDATVVA-KDLEPTHP-I----RL----G-LALNFSVFHYEILNEPRAAIDMAKEAFE 226 (260)
T ss_dssp HHHHHHHHHHHHHH-TTSCTTCH-H----HH----H-HHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HhCCCCCc-H----HH----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888999999887 43321111 1 11 1 45566666655 7888888888777653
No 329
>2br9_A 14-3-3E, 14-3-3 protein epsilon; cell regulator protein, 14-3-3, phosphoserine, structural GE consortium, SGC, ywhae; HET: SEP; 1.75A {Homo sapiens} PDB: 3ual_A* 2o98_A* 3m50_A* 3m51_A* 3axy_C*
Probab=20.31 E-value=2.1e+02 Score=26.14 Aligned_cols=54 Identities=20% Similarity=0.196 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHhhcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHh-ccCHHHHHHHHHHHHh
Q 035535 20 KESVQVYTQFIDLCQSQITETKQEASQLSKLKKSLCLALSNRAEARSR-LRDFDNALRDCEQALK 83 (518)
Q Consensus 20 ~~Ai~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~l~~~~~nra~a~~~-lg~~~~Al~~~~~al~ 83 (518)
+.|.+.|++|+++......++.+ . . |. +..|.+.-|+. +++.++|...+.+|+.
T Consensus 147 e~a~~aY~~A~~iA~~~L~pthP-i----r----Lg-LaLN~SVF~yEil~~~~~A~~lAk~afd 201 (234)
T 2br9_A 147 ENSLVAYKAASDIAMTELPPTHP-I----R----LG-LALNFSVFYYEILNSPDRACRLAKAAFD 201 (234)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTCH-H----H----HH-HHHHHHHHHHHTSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCCCCc-H----H----HH-HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 57888999999876432221111 0 1 11 45566666555 7888888887777653
No 330
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Probab=20.05 E-value=35 Score=27.59 Aligned_cols=38 Identities=13% Similarity=0.113 Sum_probs=24.4
Q ss_pred EEEEEEcCCCCCCCeEEeecCCCCCCHHHHHHhcccCCe
Q 035535 335 YIIVHASRDVKAGEEITFAYFDMLLPLEKRKEMSKTWGF 373 (518)
Q Consensus 335 ~~~v~A~rdI~~Geeit~sY~~~~~~~~~R~~l~~~~~F 373 (518)
-.-|+|+++|++|+-|. -|.....+..+-......|.|
T Consensus 15 G~GvfA~~~I~~G~~I~-ey~g~vi~~~e~~~~~~~y~f 52 (119)
T 1n3j_A 15 GYGVFARKSFEKGELVE-ECLCIVRHNDDWGTALEDYLF 52 (119)
T ss_dssp CCEEEECCCBCSCEEEC-CCCCEEECSHHHHHHSCSEEE
T ss_pred eeEEEECCcCCCCCEEE-EeeEEEECHHHHhhccCCeEE
Confidence 46789999999999987 576544443333322344555
Done!