BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035537
(178 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9ATF5|RL18A_CASSA 60S ribosomal protein L18a OS=Castanea sativa GN=RPL18A PE=2 SV=1
Length = 178
Score = 353 bits (905), Expect = 5e-97, Method: Compositional matrix adjust.
Identities = 167/178 (93%), Positives = 173/178 (97%)
Query: 1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
MVTFRFHQYQVVGR LP+E+DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1 MVTFRFHQYQVVGRGLPSETDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMY EMASRHRVR
Sbjct: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYIEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
PCIQIIKTATIPAKLCKRES+KQFHNSKIKFPLV RK+RPPSRKL+T YKA+RPNLFM
Sbjct: 121 PCIQIIKTATIPAKLCKRESSKQFHNSKIKFPLVTRKIRPPSRKLKTHYKASRPNLFM 178
>sp|P51418|R18A2_ARATH 60S ribosomal protein L18a-2 OS=Arabidopsis thaliana GN=RPL18AB
PE=1 SV=2
Length = 178
Score = 347 bits (891), Expect = 2e-95, Method: Compositional matrix adjust.
Identities = 165/178 (92%), Positives = 170/178 (95%)
Query: 1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
M FRFHQYQVVGRALPTE D PKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM
Sbjct: 1 MGAFRFHQYQVVGRALPTEKDVQPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
Query: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
LAINEI+EKNPT IKN+GIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR
Sbjct: 61 LAINEIYEKNPTTIKNFGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
PCIQIIKTAT+PAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA +PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLKTTYKANKPNLFM 178
>sp|Q9LUD4|R18A3_ARATH 60S ribosomal protein L18a-3 OS=Arabidopsis thaliana GN=RPL18AC
PE=2 SV=1
Length = 178
Score = 343 bits (881), Expect = 3e-94, Method: Compositional matrix adjust.
Identities = 163/178 (91%), Positives = 169/178 (94%)
Query: 1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
M FRFHQYQVVGRALPTE+DEHPKIYRMKLW NEV AKSKFWYF+RKLKKVKKSNGQM
Sbjct: 1 MGGFRFHQYQVVGRALPTENDEHPKIYRMKLWGRNEVCAKSKFWYFMRKLKKVKKSNGQM 60
Query: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNG VEQMYTEMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGGVEQMYTEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
PCIQIIKTAT+PAKLCKRE TKQFHNSKIKFPLVFRKVRPPSRKL+TTYKA++PNLFM
Sbjct: 121 PCIQIIKTATVPAKLCKREITKQFHNSKIKFPLVFRKVRPPSRKLKTTYKASKPNLFM 178
>sp|Q943F3|RL18A_ORYSJ 60S ribosomal protein L18a OS=Oryza sativa subsp. japonica
GN=RPL18A PE=2 SV=1
Length = 178
Score = 335 bits (858), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 158/178 (88%), Positives = 168/178 (94%)
Query: 1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQM 60
M FRFHQYQVVGR LPT +DEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQ+
Sbjct: 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQI 60
Query: 61 LAINEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRS 120
LAINEIFEKNPT IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVR
Sbjct: 61 LAINEIFEKNPTTIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRF 120
Query: 121 PCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
PCIQIIKTAT+ KLCKR++TKQFH S IKFPLV+RKVRPP+RKL+TT+KA+RPNLFM
Sbjct: 121 PCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRPPTRKLKTTFKASRPNLFM 178
>sp|Q54MK8|RL18A_DICDI 60S ribosomal protein L18a OS=Dictyostelium discoideum GN=rpl18a
PE=3 SV=2
Length = 171
Score = 203 bits (517), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 96/172 (55%), Positives = 122/172 (70%), Gaps = 5/172 (2%)
Query: 7 HQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEI 66
H++QVVGR +PTE D +PKIYRM+L+A + AKS+FWYFL K+ K+KKS G++L + EI
Sbjct: 4 HEFQVVGRHVPTERDANPKIYRMRLFAQTSIHAKSRFWYFLSKIVKMKKSTGEILNVTEI 63
Query: 67 FEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQII 126
FE P K+KN+G+++RY SR+G HN+YKEYRD T GAV QMY EMASRH R I II
Sbjct: 64 FEDKPQKVKNFGVFIRYNSRSGTHNIYKEYRDLTRCGAVSQMYDEMASRHSARESSIHII 123
Query: 127 KTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
I A L +R +TKQFH+SKIKFPL R K ++T+ A RPN F
Sbjct: 124 DIKEIAASLTRRANTKQFHDSKIKFPLTHRIA-----KSKSTFVANRPNTFF 170
>sp|Q02543|RL18A_HUMAN 60S ribosomal protein L18a OS=Homo sapiens GN=RPL18A PE=1 SV=2
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LPT P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|Q3T003|RL18A_BOVIN 60S ribosomal protein L18a OS=Bos taurus GN=RPL18A PE=2 SV=1
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/170 (52%), Positives = 122/170 (71%), Gaps = 3/170 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LPT P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAASKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P62718|RL18A_RAT 60S ribosomal protein L18a OS=Rattus norvegicus GN=Rpl18a PE=2 SV=1
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LPT P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|P62717|RL18A_MOUSE 60S ribosomal protein L18a OS=Mus musculus GN=Rpl18a PE=1 SV=1
Length = 176
Score = 191 bits (484), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 89/171 (52%), Positives = 122/171 (71%), Gaps = 3/171 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LPT P +YRM+++A N V AKS+FWYF+ +LKK+KKS+G+++ ++F
Sbjct: 9 EYKVVGRCLPTPKCHTPPLYRMRIFAPNHVVAKSRFWYFVSQLKKMKKSSGEIVYCGQVF 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P ++KN+GIWLRY SR+G HNMY+EYRD T GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLRVKNFGIWLRYDSRSGTHNMYREYRDLTTAGAVTQCYRDMGARHRARAHSIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLFM 178
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VEEIAAGKCRRPAVKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTFF 176
>sp|Q8WQI7|RL18A_SPOFR 60S ribosomal protein L18a OS=Spodoptera frugiperda GN=RpL18A PE=2
SV=1
Length = 177
Score = 190 bits (483), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 82/146 (56%), Positives = 115/146 (78%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+V+GR LP+ES+ P +Y+M++++ +++ AKS+FWYFLR+LKK KK+ G++++I EI
Sbjct: 9 EYEVIGRKLPSESEPKPPLYKMRIFSPDQIVAKSRFWYFLRQLKKFKKTTGEIVSIREIP 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P KIKN+GIWLRY+SR+G HNMY+EYRD ++ GAV Q Y +M +RHR R+ IQIIK
Sbjct: 69 EKSPVKIKNFGIWLRYESRSGVHNMYREYRDLSVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPL 153
I A C+R KQFHNS I+FPL
Sbjct: 129 VEVIKASACRRPQVKQFHNSTIRFPL 154
>sp|P41093|RL18A_DROME 60S ribosomal protein L18a OS=Drosophila melanogaster GN=RpL18A
PE=1 SV=1
Length = 177
Score = 189 bits (481), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 86/158 (54%), Positives = 119/158 (75%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LP+E + +Y+M+++A + + AKS+FWYFLR+LKK KK+ G++++I +++
Sbjct: 9 EYEVVGRKLPSEKEPQTPLYKMRIFAPDNIVAKSRFWYFLRQLKKFKKTTGEIVSIKQVY 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
E +P KIKN+GIWLRY SR+G HNMY+EYRD T+ GAV Q Y +M +RHR R+ IQIIK
Sbjct: 69 ETSPVKIKNFGIWLRYDSRSGTHNMYREYRDLTVGGAVTQCYRDMGARHRARAHSIQIIK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKL 165
+IPA +R KQFH+SKIKFPLV R +RKL
Sbjct: 129 VDSIPAAKTRRVHVKQFHDSKIKFPLVQRVHHKGNRKL 166
>sp|Q7ZWJ4|RL18A_DANRE 60S ribosomal protein L18a OS=Danio rerio GN=rpl18a PE=2 SV=1
Length = 176
Score = 188 bits (477), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 87/170 (51%), Positives = 123/170 (72%), Gaps = 3/170 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWYF+ +L+K+KK++G+++ +F
Sbjct: 9 EYKVVGRLLPSVKNPAPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKASGEIVYCGLVF 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK+P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EKSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
I A C+R + KQFH+SKIKFPL R +R R+ + + RPN F
Sbjct: 129 VQVIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTKRPNTF 175
>sp|P0DJ18|RL18A_TETTH 60S ribosomal protein L18a OS=Tetrahymena thermophila GN=RPL18A
PE=1 SV=1
Length = 189
Score = 184 bits (466), Expect = 4e-46, Method: Compositional matrix adjust.
Identities = 88/174 (50%), Positives = 118/174 (67%)
Query: 4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAI 63
+ QY V LP E P+I +M+++A +EV AK+KFWY +RKL K+K+S G++L++
Sbjct: 16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSV 75
Query: 64 NEIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCI 123
NEI+EK+ +K YGI L+YQSRT HNMYKEYRD +LNGAV Q+ +MA HR + I
Sbjct: 76 NEIYEKSLNTVKTYGIVLKYQSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTI 135
Query: 124 QIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
QII+TAT+ K KR +T N+ +KFP+V RP +K RT YKATRP F
Sbjct: 136 QIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEKKYRTVYKATRPTTF 189
>sp|Q90YU9|RL18A_ICTPU 60S ribosomal protein L18a OS=Ictalurus punctatus GN=rpl18a PE=2
SV=1
Length = 176
Score = 183 bits (465), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 85/170 (50%), Positives = 120/170 (70%), Gaps = 3/170 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSAKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
E++P K+KN+GIWLRY SR+G HNMY+EYRD T +GAV Q Y +M +RHR R+ IQI+K
Sbjct: 69 EQSPLKVKNFGIWLRYDSRSGTHNMYREYRDLTTSGAVTQCYRDMGARHRARAHAIQIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
I A C+R + KQFH+SKIKFPL R +R R+ + + RP F
Sbjct: 129 VQVIAANKCRRAAIKQFHDSKIKFPLPHRVLR---RQHKPRFTTRRPQTF 175
>sp|O44480|RL18A_CAEEL 60S ribosomal protein L18a OS=Caenorhabditis elegans GN=rpl-20 PE=3
SV=2
Length = 180
Score = 182 bits (463), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 80/151 (52%), Positives = 115/151 (76%)
Query: 6 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 65
++Y VVGR +PTE + I++M+++ATN V AKS+FWYF+ L++VKK+NG++L+I +
Sbjct: 10 LNEYVVVGRKIPTEKEPVTPIWKMQIFATNHVIAKSRFWYFVSMLRRVKKANGEILSIKQ 69
Query: 66 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 125
+FEKNP +KNYG+WL+Y SRTG+HNMY+EYRDTT+ GAV Q Y +M +RHR ++ I I
Sbjct: 70 VFEKNPGTVKNYGVWLKYDSRTGHHNMYREYRDTTVAGAVTQCYRDMGARHRAQADRIHI 129
Query: 126 IKTATIPAKLCKRESTKQFHNSKIKFPLVFR 156
+K T+ A+ KR K FH++KI+FPL R
Sbjct: 130 LKVQTVKAEDTKRAGIKMFHDAKIRFPLPHR 160
>sp|P0CX24|RL20B_YEAST 60S ribosomal protein L20-B OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20B PE=1 SV=1
Length = 172
Score = 176 bits (446), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 6 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 65
F +YQV+GR LPTES PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 66 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 125
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 126 IKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
+K A I KR+ KQF +KFPL R +K T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171
>sp|P0CX23|RL20A_YEAST 60S ribosomal protein L20-A OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=RPL20A PE=1 SV=1
Length = 172
Score = 176 bits (446), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 87/173 (50%), Positives = 121/173 (69%), Gaps = 6/173 (3%)
Query: 6 FHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINE 65
F +YQV+GR LPTES PK++RM+++A+NEV AKS++WYFL+KL KVKK++G++++IN+
Sbjct: 4 FKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQ 63
Query: 66 IFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 125
I E +PTK+KN+G+W+RY SR+G HNMYKE RD + AVE +Y +MA+RHR R I I
Sbjct: 64 INEAHPTKVKNFGVWVRYDSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHI 123
Query: 126 IKTATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
+K A I KR+ KQF +KFPL R +K T+ RP+ F
Sbjct: 124 LKVAEIEKTADVKRQYVKQFLTKDLKFPLPHR-----VQKSTKTFSYKRPSTF 171
>sp|O57561|RL18A_SALSA 60S ribosomal protein L18a OS=Salmo salar GN=rpl18a PE=2 SV=1
Length = 176
Score = 176 bits (445), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 83/170 (48%), Positives = 116/170 (68%), Gaps = 3/170 (1%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+Y+VVGR LP+ + P +YRM+++A N V AKS+FWYF+ +L+K+KK+NG+ + +
Sbjct: 9 EYKVVGRLLPSVKNPTPPLYRMRIFAPNHVVAKSRFWYFVSQLRKMKKANGETVYCGLVH 68
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
EK P K+KN+G+WLR SR+G HNMY+EYRD T + AV Q Y +M +RHR R+ I I+K
Sbjct: 69 EKTPLKVKNFGVWLRNDSRSGTHNMYREYRDLTTSAAVTQCYRDMGARHRARAHSIHIMK 128
Query: 128 TATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
I A C+R + KQFH+SKIKFPL R +R R+ + RPN F
Sbjct: 129 VQEIAANKCRRPAIKQFHDSKIKFPLPHRVLR---RQHNPRFTTKRPNTF 175
>sp|P05732|RL20_SCHPO 60S ribosomal protein L20 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=rpl20a PE=1 SV=3
Length = 176
Score = 169 bits (429), Expect = 7e-42, Method: Compositional matrix adjust.
Identities = 84/171 (49%), Positives = 114/171 (66%), Gaps = 1/171 (0%)
Query: 8 QYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIF 67
+YQVVGR +PTE + PK++RM+L+A NE AKS++WYFL+ + KVKK+ G+++AINEI
Sbjct: 5 EYQVVGRKVPTEHEPVPKLFRMRLFAPNESVAKSRYWYFLKMINKVKKATGEIVAINEIS 64
Query: 68 EKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIK 127
E P K K +GIW+RY SR+G HNMYKE+RDTT GAVE MY +MA+RHR R I+I+K
Sbjct: 65 EPKPLKAKVFGIWIRYDSRSGTHNMYKEFRDTTRVGAVEAMYADMAARHRARFRSIRILK 124
Query: 128 TATIPAKL-CKRESTKQFHNSKIKFPLVFRKVRPPSRKLRTTYKATRPNLF 177
+ K +R KQ N +KFPL R+ + + RP+ F
Sbjct: 125 VVEVEKKEDVRRNYVKQLLNPHLKFPLPHRRTGVVGLAGKKVFAPHRPSTF 175
>sp|A6UT94|RLX_META3 50S ribosomal protein LX OS=Methanococcus aeolicus (strain Nankai-3
/ ATCC BAA-1280) GN=rplX PE=3 SV=1
Length = 73
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 26/40 (65%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPA 133
KEY+ A+E++Y+E+ S+H V+ I+II+ + I A
Sbjct: 22 KEYKAMKEEDAIEKIYSEIGSKHNVKRASIKIIEVSEISA 61
>sp|A6VI47|RLX_METM7 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C7 /
ATCC BAA-1331) GN=rplX PE=3 SV=1
Length = 76
Score = 34.3 bits (77), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 24/38 (63%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 131
KEY + A+E MY+EM S+H V+ I+I++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRAYIKIVEVSEI 59
>sp|A4G0D0|RLX_METM5 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C5 /
ATCC BAA-1333) GN=rplX PE=3 SV=1
Length = 76
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 131
KEY + A+E MY+EM S+H V+ I++++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHAVKRANIKVVEISEI 59
>sp|A9A8N2|RLX_METM6 50S ribosomal protein LX OS=Methanococcus maripaludis (strain C6 /
ATCC BAA-1332) GN=rplX PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 23/38 (60%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 131
KEY + A+E MY+EM S+H V+ I +++ + I
Sbjct: 22 KEYNVVKEDDALETMYSEMGSKHSVKRAYINVLEVSEI 59
>sp|Q6M157|RLX_METMP 50S ribosomal protein LX OS=Methanococcus maripaludis (strain S2 /
LL) GN=rplX PE=3 SV=1
Length = 76
Score = 33.1 bits (74), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 25/41 (60%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAK 134
KEY N A+E MY+E+ S+H V+ I++++ + I +
Sbjct: 22 KEYNVLKENDALETMYSEIGSKHAVKRANIKVVEISEISVE 62
>sp|A6UR53|RLX_METVS 50S ribosomal protein LX OS=Methanococcus vannielii (strain SB /
ATCC 35089 / DSM 1224) GN=rplX PE=3 SV=1
Length = 76
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 24/38 (63%)
Query: 94 KEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI 131
KEY + A+E MY++M S+H V+ IQ+++ + I
Sbjct: 22 KEYNVLKESDALEIMYSDMGSKHSVKRANIQVLEISEI 59
>sp|D5H0J3|PIP_LACCS Proline iminopeptidase OS=Lactobacillus crispatus (strain ST1)
GN=pip PE=3 SV=1
Length = 293
Score = 32.0 bits (71), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 5 RFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAIN 64
R Y +G + D+HP++Y + W + + LRK+ + +S G MLA+
Sbjct: 56 RIIMYDQLGCGKSSIPDDHPELYTKETWVKELMALREHL--ALRKIHLLGQSWGGMLALI 113
Query: 65 EIFEKNPTKIK 75
+ + +P I+
Sbjct: 114 YMCDYHPVGIQ 124
>sp|B9LUU5|RLX_HALLT 50S ribosomal protein LX OS=Halorubrum lacusprofundi (strain ATCC
49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=rplX PE=3 SV=1
Length = 58
Score = 31.2 bits (69), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 28/52 (53%)
Query: 74 IKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQI 125
+ Y + ++QSR G+ K+ + A E++YT + S+H + P I+I
Sbjct: 1 MSTYTVTGQFQSRDGFQPFTKDVEAENEDLARERIYTTVGSQHNRKRPQIEI 52
>sp|B4N8G7|CRBN_DROWI Protein cereblon homolog OS=Drosophila willistoni GN=GK12054 PE=3
SV=1
Length = 612
Score = 31.2 bits (69), Expect = 3.5, Method: Composition-based stats.
Identities = 20/72 (27%), Positives = 35/72 (48%), Gaps = 7/72 (9%)
Query: 65 EIFEKNPTKIKNYGIWLRYQSRTGYHNMYKEYRDTT----LNGAVEQMYTEMASRHRVRS 120
E F P K + G R++ NMY+ Y+ T+ L+ +E YT++ + R +
Sbjct: 365 EYFLPEPLKCIDMGSMSRFRDIPSMRNMYQRYQITSTPWPLDACLEYSYTDIVEKARKK- 423
Query: 121 PCIQIIKTATIP 132
++I K T+P
Sbjct: 424 --LEIHKIDTMP 433
>sp|Q494D6|HIS6_BLOPB Imidazole glycerol phosphate synthase subunit HisF OS=Blochmannia
pennsylvanicus (strain BPEN) GN=hisF PE=3 SV=1
Length = 258
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 31/140 (22%), Positives = 62/140 (44%), Gaps = 17/140 (12%)
Query: 10 QVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFE- 68
Q V ++ T + KIY++K + + RAK W L +KKV++ + +N + +
Sbjct: 123 QCVVVSIDTWHNPQKKIYQVKCYTGDSTRAKITTWQTLDWVKKVQEYGAGEIVLNMMNQD 182
Query: 69 --KNPTKI-------KNYGIWLRYQSRTG-YHNMYKEYRDTTLNGAVEQ--MYTEMASRH 116
KN + K+ + L G Y + + +RD ++GA+ + ++ H
Sbjct: 183 GMKNGYDLDQLRNIRKHCQVPLIASGGAGTYQHFLEAFRDADVDGALAASVFHNQIIDIH 242
Query: 117 RVRSPCIQIIKTATIPAKLC 136
+++ Q + I +LC
Sbjct: 243 KLK----QFLNKEGIKIRLC 258
>sp|A8MLP2|ACCA_ALKOO Acetyl-coenzyme A carboxylase carboxyl transferase subunit alpha
OS=Alkaliphilus oremlandii (strain OhILAs) GN=accA PE=3
SV=1
Length = 316
Score = 30.8 bits (68), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 5/36 (13%)
Query: 45 YFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIW 80
Y L++LK ++ ML E+ EK TKI+N GIW
Sbjct: 285 YVLQELKDLR-----MLKTEELLEKRYTKIRNIGIW 315
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.133 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 61,777,890
Number of Sequences: 539616
Number of extensions: 2144446
Number of successful extensions: 4824
Number of sequences better than 100.0: 33
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 4794
Number of HSP's gapped (non-prelim): 33
length of query: 178
length of database: 191,569,459
effective HSP length: 110
effective length of query: 68
effective length of database: 132,211,699
effective search space: 8990395532
effective search space used: 8990395532
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 57 (26.6 bits)