Query 035537
Match_columns 178
No_of_seqs 138 out of 249
Neff 4.2
Searched_HMMs 29240
Date Mon Mar 25 05:45:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035537.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035537hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_S 60S ribosomal protein L 100.0 2E-101 7E-106 633.4 10.9 178 1-178 1-178 (178)
2 3u5e_S L18A, 60S ribosomal pro 100.0 4E-100 1E-104 623.0 13.8 170 4-178 2-172 (172)
3 4a18_X RPL18A, 60S ribosomal p 100.0 1.2E-99 4E-104 627.4 15.6 174 4-177 16-189 (189)
4 3j21_l 50S ribosomal protein L 100.0 2.4E-37 8.1E-42 224.3 7.5 74 73-146 2-75 (77)
5 4adx_G RPLX; ribosome, protein 100.0 6.5E-35 2.2E-39 211.9 6.8 74 73-146 4-77 (78)
6 4adx_G RPLX; ribosome, protein 56.9 17 0.00058 25.6 4.6 62 4-68 3-64 (78)
7 3j21_l 50S ribosomal protein L 44.5 26 0.00089 24.6 3.9 63 4-69 1-63 (77)
8 3ijm_A Uncharacterized restric 34.9 19 0.00065 28.6 2.1 19 72-90 113-133 (151)
9 2vy4_A U11/U12 small nuclear r 29.0 32 0.0011 20.8 2.0 27 29-55 7-33 (37)
10 2nr7_A Secretion activator pro 28.6 17 0.00058 29.7 0.9 43 69-111 26-74 (195)
11 2kfd_A PRE-mRNA-processing pro 27.0 27 0.00091 24.5 1.5 21 92-112 45-66 (69)
12 2j8a_A Histone-lysine N-methyl 25.1 45 0.0015 25.9 2.7 38 52-90 25-62 (136)
No 1
>3iz5_S 60S ribosomal protein L18A (L18AE); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_S 3izc_S 3izs_S
Probab=100.00 E-value=2e-101 Score=633.38 Aligned_cols=178 Identities=89% Similarity=1.400 Sum_probs=164.3
Q ss_pred CcceeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEE
Q 035537 1 MVTFRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIW 80 (178)
Q Consensus 1 ~~~~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIw 80 (178)
|++|.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.|||||||
T Consensus 1 ~~~~~l~eY~VvGr~lPt~k~p~p~lyrm~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIw 80 (178)
T 3iz5_S 1 MGAFRFHQYQVVGRGLPTPTDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQILAINEIFEKNPTTIKNYGIW 80 (178)
T ss_dssp CCSCSCEEEEEEECCCCCSSSCCCCCBCCCEEESSHHHHHHHHHHHHHHTTCCCSTTCCEEEEECCCSSSSSCCCCCEEE
T ss_pred CCCceeEEEEEEEecCCCCCCCCCceEEEEeecCCeEEEeehHHHHHHHHhhhhhccceEEEEEEEccCCCceeEEeeEE
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCC
Q 035537 81 LRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRP 160 (178)
Q Consensus 81 lrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~ 160 (178)
||||||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+||||++|+||||||+++.
T Consensus 81 lrYdSrsgtHNmyKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~ikQf~~skikFPl~hrv~~~ 160 (178)
T 3iz5_S 81 LRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRFPCIQIIKTATVHFKLCKRDNTKQFHKSDIKFPLVYRKVRP 160 (178)
T ss_dssp EEEECSSSEEEEEEECCCSCHHHHHHHHHHHHHTTSCCCTTCCCEEEEECCCTTTCCSCHHHHHHHHHHSSSSSSSSSSS
T ss_pred EEEcccCCcccchhhhhhccHHHHHHHHHHHhhhhhcccccceEEEeEEEEcHHHcCCHHHHHhhcCCCccccceeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCccccCceeecCCCCCC
Q 035537 161 PSRKLRTTYKATRPNLFM 178 (178)
Q Consensus 161 ~~~~~~~~F~~~rP~t~~ 178 (178)
+.++++++|+++||+||+
T Consensus 161 ~~~~~~~~F~~~rP~t~~ 178 (178)
T 3iz5_S 161 PTRKLKTTFKASRPNLFM 178 (178)
T ss_dssp GGGSSCC-----------
T ss_pred ccccccCeEeccCCccCC
Confidence 777888999999999985
No 2
>3u5e_S L18A, 60S ribosomal protein L20-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_S 4b6a_S
Probab=100.00 E-value=4.1e-100 Score=623.03 Aligned_cols=170 Identities=51% Similarity=0.889 Sum_probs=166.7
Q ss_pred eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEE
Q 035537 4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY 83 (178)
Q Consensus 4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY 83 (178)
+.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus 2 ~~l~eY~VvGr~lPt~k~~~p~lyrm~iFApn~vvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 81 (172)
T 3u5e_S 2 AHFKEYQVIGRRLPTESVPEPKLFRMRIFASNEVIAKSRYWYFLQKLHKVKKASGEIVSINQINEAHPTKVKNFGVWVRY 81 (172)
T ss_dssp CSCEEEEEEECCCCBTTBCSCCCEEEEEEESSHHHHHHHHHHHHTTTSSCCGGGCCEEEEEECCCSSTTSCEEEEEEEEE
T ss_pred CccEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHhhhhcccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeee-CCCccCCccccccccCCCcCcccccccCCCC
Q 035537 84 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATI-PAKLCKRESTKQFHNSKIKFPLVFRKVRPPS 162 (178)
Q Consensus 84 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI-~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~ 162 (178)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+|| +++||+||+|+||||++||||||||+++.
T Consensus 82 dSrsgtHNmYKEyRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~~rrp~vkQf~~skikFPl~hrv~~~-- 159 (172)
T 3u5e_S 82 DSRSGTHNMYKEIRDVSRVAAVETLYQDMAARHRARFRSIHILKVAEIEKTADVKRQYVKQFLTKDLKFPLPHRVQKS-- 159 (172)
T ss_dssp ECSSCEEEEEEEEEESSHHHHHHHHHHHHHHHHCCCGGGEEEEEEEECCSTTSCCCHHHHGGGSTTCEEECCSCCCCC--
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEeeeEEEcchhcCCChhhHhhhcCCCccccccccccC--
Confidence 999999999999999999999999999999999999999999999999 89999999999999999999999999875
Q ss_pred ccccCceeecCCCCCC
Q 035537 163 RKLRTTYKATRPNLFM 178 (178)
Q Consensus 163 ~~~~~~F~~~rP~t~~ 178 (178)
+++|+++||+|||
T Consensus 160 ---~~~F~~~rP~t~~ 172 (172)
T 3u5e_S 160 ---TKTFSYKRPSTFY 172 (172)
T ss_dssp ---SSSCBSSCCCCCC
T ss_pred ---CCceeccCCCCCC
Confidence 4899999999997
No 3
>4a18_X RPL18A, 60S ribosomal protein L36; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_X 4a1b_X 4a1d_X
Probab=100.00 E-value=1.2e-99 Score=627.41 Aligned_cols=174 Identities=51% Similarity=0.846 Sum_probs=171.1
Q ss_pred eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccCCCceeeeeeEEEEE
Q 035537 4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEKNPTKIKNYGIWLRY 83 (178)
Q Consensus 4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY 83 (178)
+.|+||+||||+||||++|+|+||+|+|||||+|||||||||||+||+||||++||||+|++|+|++|+.||||||||||
T Consensus 16 ~~l~eY~VvGr~lPt~k~p~P~lyrM~iFApn~VvAKSrFWyfl~~l~K~Kks~GeIv~~~~i~Ek~p~~VKNfGIwlrY 95 (189)
T 4a18_X 16 MKVRQYVVSAARLPIEQGTKPEILQMRVFARDEVHAKTKFWYNMRKLNKIKRSQGRILSVNEIYEKSLNTVKTYGIVLKY 95 (189)
T ss_dssp CCCEEEEEEEEETTCCTTSCCCEEEEEEEESSHHHHHHHHHHHHHHHSSCCSTTEEEEEEEEECCSCTTSCEEEEEEEEE
T ss_pred cceEEEEEEEecCCCCCCCCCCeEEEEecCCCcEEEeehHHHHHHHHHhhhhccceEEEEEEEccCCCceeEEeeEEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCccccccccCCCcCcccccccCCCCc
Q 035537 84 QSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHNSKIKFPLVFRKVRPPSR 163 (178)
Q Consensus 84 ~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~~kikFPl~~r~~~~~~~ 163 (178)
|||||||||||||||+|++|||+|||+|||||||||+++||||+|+||+++||+||+|+|||+++|+||||||+++.+++
T Consensus 96 dSRsgtHNmYKEYRdlt~~gAV~q~Y~dMgsRHRar~~sIqIikVeeI~~~~~rrp~vkQf~~skikFPl~hrv~~~~~~ 175 (189)
T 4a18_X 96 QSRTAIHNMYKEYRDVSLNGAVSQLIQDMAGNHRAQPDTIQIIRTATLEPKDIKRPATLAMRNAALKFPIVKTIHRPSEK 175 (189)
T ss_dssp ECSSCEEEEEEEEEESCHHHHHHHHHHHHHHTTCCCGGGCEEEEEEECCGGGCCCHHHHTTCCSCCEEECCCCCCCCSSG
T ss_pred cccCCccccchhhhhccHHHHHHHHHHHhhhhhcccccceEEEEEEEECHHHccCHHHHHHhccCCccccceeecccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988767
Q ss_pred cccCceeecCCCCC
Q 035537 164 KLRTTYKATRPNLF 177 (178)
Q Consensus 164 ~~~~~F~~~rP~t~ 177 (178)
+++++|+++||+||
T Consensus 176 ~~~~~F~~~rP~t~ 189 (189)
T 4a18_X 176 KYRTVYKATRPTTF 189 (189)
T ss_dssp GGCCSSCSSCCCCC
T ss_pred cccceeeccCCCCC
Confidence 78899999999997
No 4
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=100.00 E-value=2.4e-37 Score=224.27 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=72.4
Q ss_pred eeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537 73 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN 146 (178)
Q Consensus 73 ~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~ 146 (178)
.|||||||++|+||+|+|||||||||++++|||||||+||||||++|+++|||++|+||+++||+||+|+||+.
T Consensus 2 ~vK~f~V~g~y~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~e~~~~~vkql~~ 75 (77)
T 3j21_l 2 KVKVFRVHGYFEKNGRKFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPEEAEDIVVRRLSL 75 (77)
T ss_dssp CCCEEEEEEEEEETTEEEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTTCCSSHHHHHHTT
T ss_pred ceEEEEEEEEEEcCCCeEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHHHcCCHHHHHHHh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999974
No 5
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=100.00 E-value=6.5e-35 Score=211.91 Aligned_cols=74 Identities=19% Similarity=0.262 Sum_probs=72.7
Q ss_pred eeeeeeEEEEEecCCcceecceeeccCChhhHHHHHHHHhhhccccCCCCceEEEeeeeCCCccCCcccccccc
Q 035537 73 KIKNYGIWLRYQSRTGYHNMYKEYRDTTLNGAVEQMYTEMASRHRVRSPCIQIIKTATIPAKLCKRESTKQFHN 146 (178)
Q Consensus 73 ~vKNfGIwlrY~SrsgthNmyKEyRdlt~~gAV~q~Y~dmgsRHrar~~sIqIikVeeI~~~e~rrp~vkQf~~ 146 (178)
.|||||||++|+|++|+|||||||||++++||||+||+||||||++++++|+|++|+||+++||+||+|+||+.
T Consensus 4 ~vK~f~V~g~~~~r~~~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~~e~~~~~ikql~~ 77 (78)
T 4adx_G 4 KTKIFRVKGKFLMGDKLQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISPEEVQDPVVKALVQ 77 (78)
T ss_pred eeEEEEEEEEEEcCCCeEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCHHHcCCHHHHHHhc
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999975
No 6
>4adx_G RPLX; ribosome, protein synthesis; 6.60A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 2jxt_A
Probab=56.90 E-value=17 Score=25.62 Aligned_cols=62 Identities=18% Similarity=0.226 Sum_probs=52.8
Q ss_pred eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEecc
Q 035537 4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFE 68 (178)
Q Consensus 4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~E 68 (178)
|.++-|.|.|+-... .. +.-|.=-+=|.|+..|..+-.--|---+++|.++=.|+.+.+|.+
T Consensus 3 ~~vK~f~V~g~~~~r-~~--~~~f~KE~ra~~~~~Ave~~Yse~gSrHrvkr~~I~I~~V~eI~~ 64 (78)
T 4adx_G 3 MKTKIFRVKGKFLMG-DK--LQPFTKELNAIREEEIYERLYSEFGSKHRVPRSKVKIEEIEEISP 64 (78)
T ss_pred ceeEEEEEEEEEEcC-CC--eEEEEEEEecCCHHHHHHHHHHHHHhhcCCCccceEEEEEEEeCH
Confidence 678999999987533 22 455667788999999999999999999999999999999999943
No 7
>3j21_l 50S ribosomal protein LX; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=44.51 E-value=26 Score=24.60 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=51.1
Q ss_pred eeeEEEEEEeecCCCCCCCCCceEEEEeeecCceeeehhhHHHHHHHhhhhccCcceEEEEEeccC
Q 035537 4 FRFHQYQVVGRALPTESDEHPKIYRMKLWATNEVRAKSKFWYFLRKLKKVKKSNGQMLAINEIFEK 69 (178)
Q Consensus 4 ~~l~eY~Vvgr~lPt~k~p~p~ly~m~iFApn~vvAKSrFWyfl~~l~K~Kk~~GeIv~~~~i~Ek 69 (178)
|.+|.|.|.|+-... .. +.=|.=-+=|.|+-.|..+-.--|---+++|.++=.|+.+.+|.+.
T Consensus 1 m~vK~f~V~g~y~~r-~~--~~~f~KE~ra~~~~~Ave~~Yse~gsrHr~kr~~I~I~~V~eI~~~ 63 (77)
T 3j21_l 1 MKVKVFRVHGYFEKN-GR--KFKFTKEYRGIKEEDVKELVYSDIGSKHKVKRNKIFIKEIKEIRPE 63 (77)
T ss_dssp CCCCEEEEEEEEEET-TE--EEEEEEEEECSSHHHHHHHHHHHHHHHTTCCTTSEEEEEEEEECTT
T ss_pred CceEEEEEEEEEEcC-CC--eEeEEEEEecCCHhHHHHHHHHHHhhhhCCCccceEEEEEEEeCHH
Confidence 568899999986533 22 2334445669999999999999999999999999999999999644
No 8
>3ijm_A Uncharacterized restriction endonuclease-like FOL superfamily protein; DUF820, cyanobacteria, PD(D/E)XK superfamily, structural GEN PSI-2; 1.70A {Spirosoma linguale}
Probab=34.91 E-value=19 Score=28.57 Aligned_cols=19 Identities=37% Similarity=0.593 Sum_probs=16.3
Q ss_pred ceeeee--eEEEEEecCCcce
Q 035537 72 TKIKNY--GIWLRYQSRTGYH 90 (178)
Q Consensus 72 ~~vKNf--GIwlrY~Srsgth 90 (178)
+.|=|| |.|+||+...|..
T Consensus 113 GFVynYkt~~W~rYr~g~gg~ 133 (151)
T 3ijm_A 113 GFVFNYKTQQWLRYRLGDGGV 133 (151)
T ss_dssp EEEEETTTTEEEEEETTSTTC
T ss_pred eeeEeeccCceeEEEcCCCce
Confidence 577887 9999999998875
No 9
>2vy4_A U11/U12 small nuclear ribonucleoprotein 48 kDa protein; splicing, mRNA processing, alternative splicing, transcription, nucleus, spliceosome; NMR {Homo sapiens} SCOP: g.37.1.7 PDB: 2vy5_A
Probab=29.01 E-value=32 Score=20.76 Aligned_cols=27 Identities=15% Similarity=0.081 Sum_probs=21.5
Q ss_pred EEeeecCceeeehhhHHHHHHHhhhhc
Q 035537 29 MKLWATNEVRAKSKFWYFLRKLKKVKK 55 (178)
Q Consensus 29 m~iFApn~vvAKSrFWyfl~~l~K~Kk 55 (178)
..=|.|||.|..+||++-|.+=++-+.
T Consensus 7 ~CPyd~~H~i~~~~l~~Hl~kC~~r~~ 33 (37)
T 2vy4_A 7 ICPYDSNHHMPKSSLAKHMASCRLRKM 33 (37)
T ss_dssp ECTTTSSCEECGGGHHHHHHHHHHHHC
T ss_pred ECCCCCCeEeCHHHHHHHHHHHhhhhh
Confidence 344789999999999999987665543
No 10
>2nr7_A Secretion activator protein, putative; APCC85792, porphyromonas gingivalis W83 structural genomics, PSI-2, protein structure initiative; 1.30A {Porphyromonas gingivalis} SCOP: d.2.1.9
Probab=28.62 E-value=17 Score=29.65 Aligned_cols=43 Identities=14% Similarity=0.196 Sum_probs=30.3
Q ss_pred CCCceeeeeeEEEEEecCCcc------eecceeeccCChhhHHHHHHHH
Q 035537 69 KNPTKIKNYGIWLRYQSRTGY------HNMYKEYRDTTLNGAVEQMYTE 111 (178)
Q Consensus 69 k~p~~vKNfGIwlrY~Srsgt------hNmyKEyRdlt~~gAV~q~Y~d 111 (178)
..|+-.=||||-.+.-++.|. +.-....|+||.++|++.+|..
T Consensus 26 ~D~GG~T~~GIT~~t~~~~g~~~~~~g~~~~~dv~~Lt~~~a~~~Iy~~ 74 (195)
T 2nr7_A 26 ADAGGATNKGVTIATWKRVGYDKDGDGDIDVEDLKLLTDDDVLNRVLKP 74 (195)
T ss_dssp GGGTCCEEECCCCCCTTTSSCBCTTSTTCCCSCGGGSCHHHHHHHTHHH
T ss_pred CCCCCCcchhhhHHHHHhcCCccccCCCCCHHHHHhCCHHHHHHHHHHH
Confidence 345667899999885555553 2223458999999999977753
No 11
>2kfd_A PRE-mRNA-processing protein PRP40; FF domain, mRNA splicing, nucleus, phosphoprotein, ribonucleoprotein, nuclear protein; NMR {Saccharomyces cerevisiae}
Probab=26.95 E-value=27 Score=24.49 Aligned_cols=21 Identities=14% Similarity=0.294 Sum_probs=17.3
Q ss_pred cceeeccC-ChhhHHHHHHHHh
Q 035537 92 MYKEYRDT-TLNGAVEQMYTEM 112 (178)
Q Consensus 92 myKEyRdl-t~~gAV~q~Y~dm 112 (178)
-|.||+|+ .+.....|+|+|+
T Consensus 45 ~~~Ey~~l~~E~~v~~qif~~F 66 (69)
T 2kfd_A 45 ESLEYKALGDEDNIRRQIFEDF 66 (69)
T ss_dssp TSTTSGGGTTSHHHHHHHHHHH
T ss_pred cCHHHHHhhccHHHHHHHHHhc
Confidence 46799999 5558899999986
No 12
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=25.06 E-value=45 Score=25.89 Aligned_cols=38 Identities=16% Similarity=0.198 Sum_probs=27.3
Q ss_pred hhhccCcceEEEEEeccCCCceeeeeeEEEEEecCCcce
Q 035537 52 KVKKSNGQMLAINEIFEKNPTKIKNYGIWLRYQSRTGYH 90 (178)
Q Consensus 52 K~Kk~~GeIv~~~~i~Ek~p~~vKNfGIwlrY~Srsgth 90 (178)
-+=.+=|||.+|+-+.++....-++||- .+|.+++|..
T Consensus 25 ~~Fs~fGeV~~~~li~Dp~Tg~slGfgf-Vef~d~~g~~ 62 (136)
T 2j8a_A 25 NYFKKYGEISHFEAFNDPNSALPLHVYL-IKYASSDGKI 62 (136)
T ss_dssp HHHHTTSCCSEEEEEECTTTCCEEEEEE-EECC------
T ss_pred HHHHhcCCeEEEEEEecCCCCceeeEEE-EEECCCCCCc
Confidence 3334779999999999999999999996 7787766654
Done!