BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035538
MASSSPSISLSRPPIITSILNPKPSRHFHRCTVSFSTIYCSHTELAAKAIHFHNPCRGIA
QKRSKIWRSNATSGEVLPTESTPLETSQEMVSSTGDESLSSVISVLLFAAFIALSILTIG
VVYIGVTDFLQKREREKFEKEEAATKKKKKVKAKPRAGPRGFGQKIDDDDD

High Scoring Gene Products

Symbol, full name Information P value
AT2G29180 protein from Arabidopsis thaliana 1.1e-09

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035538
        (171 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2043192 - symbol:AT2G29180 "AT2G29180" species...   140  1.1e-09   1


>TAIR|locus:2043192 [details] [associations]
            symbol:AT2G29180 "AT2G29180" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] [GO:0009535 "chloroplast thylakoid membrane"
            evidence=IDA] [GO:0009965 "leaf morphogenesis" evidence=RCA]
            [GO:0030154 "cell differentiation" evidence=RCA] [GO:0045893
            "positive regulation of transcription, DNA-dependent" evidence=RCA]
            EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0009535 EMBL:AC004561
            UniGene:At.28148 UniGene:At.48528 EMBL:BT005708 EMBL:AK118151
            IPI:IPI00527006 PIR:D84693 RefSeq:NP_180481.1 STRING:Q9ZW05
            PRIDE:Q9ZW05 EnsemblPlants:AT2G29180.1 GeneID:817467
            KEGG:ath:AT2G29180 TAIR:At2g29180 eggNOG:NOG287238
            HOGENOM:HOG000005734 InParanoid:Q9ZW05 OMA:GQKINED PhylomeDB:Q9ZW05
            ProtClustDB:CLSN2713639 ArrayExpress:Q9ZW05 Genevestigator:Q9ZW05
            Uniprot:Q9ZW05
        Length = 169

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 37/117 (31%), Positives = 57/117 (48%)

Query:    61 QKRSKIWRSNAT----SGEVLPTESTPLETSQEMVSSTGDESLSSVXXXXXXXXXXXXXX 116
             Q+++++WR +AT    S E++ ++S+   +S  +VSS G + ++ +              
Sbjct:    49 QEKTQLWRVSATPEEISQEIVSSDSS--SSSGAVVSSGGQDGVALIIQVLLFVAFLALTV 106

Query:   117 XTIGVVYIGVTDFL---QXXXXXXXXXXXXXXXXXXXXXXXXXXGPRGFGQKIDDDD 170
              TIGVVYIGVT+FL   +                          GPRGFGQKI+DDD
Sbjct:   107 LTIGVVYIGVTEFLGKREREKFEKDEAAKKSKKGGKKKAMRARAGPRGFGQKIEDDD 163


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.316   0.131   0.392    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      171       113   0.00091  102 3  11 22  0.49    30
                                                     29  0.44    32


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  579 (62 KB)
  Total size of DFA:  125 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  12.56u 0.18s 12.74t   Elapsed:  00:00:01
  Total cpu time:  12.56u 0.18s 12.74t   Elapsed:  00:00:01
  Start:  Thu May  9 20:31:53 2013   End:  Thu May  9 20:31:54 2013

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