Query 035538
Match_columns 171
No_of_seqs 20 out of 22
Neff 2.2
Searched_HMMs 13730
Date Mon Mar 25 05:46:44 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035538.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/035538hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1o82a_ a.64.2.1 (A:) Bacterio 35.4 14 0.0011 24.4 3.1 21 99-119 25-45 (70)
2 d2e74e1 f.23.24.1 (E:1-32) Pet 21.4 19 0.0014 20.7 1.4 20 103-122 3-23 (32)
3 d2hyda2 f.37.1.1 (A:1-323) Put 18.9 22 0.0016 23.9 1.5 29 113-141 164-192 (323)
4 d1rh1a2 f.1.1.1 (A:313-511) Co 16.2 38 0.0027 25.9 2.5 44 97-140 141-195 (199)
5 d2b5ua2 b.110.1.1 (A:84-315) C 13.8 36 0.0026 26.2 1.8 11 122-132 200-210 (232)
6 d1imla2 g.39.1.3 (A:29-76) Cys 12.4 31 0.0022 21.3 0.8 8 157-164 32-39 (48)
7 d1cola_ f.1.1.1 (A:) Colicin A 11.9 58 0.0042 24.8 2.5 17 97-113 139-155 (197)
8 d3b60a2 f.37.1.1 (A:10-328) Mu 11.2 56 0.0041 21.6 1.9 28 114-141 160-187 (319)
9 d1b8ta4 g.39.1.3 (A:144-192) C 10.6 37 0.0027 20.9 0.7 7 157-163 31-37 (49)
10 d1hpca_ b.84.1.1 (A:) Protein 10.0 51 0.0037 22.6 1.4 16 119-134 20-35 (131)
No 1
>d1o82a_ a.64.2.1 (A:) Bacteriocin AS-48 {Enterococcus faecalis [TaxId: 1351]}
Probab=35.41 E-value=14 Score=24.40 Aligned_cols=21 Identities=24% Similarity=0.371 Sum_probs=19.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhh
Q 035538 99 LSSVISVLLFAAFIALSILTI 119 (171)
Q Consensus 99 ~a~vis~LlfvAfvgLsilTi 119 (171)
+-++||.|+-|+--|||+|.-
T Consensus 25 vttivsil~avgsgglsllaa 45 (70)
T d1o82a_ 25 VTTIVSILTAVGSGGLSLLAA 45 (70)
T ss_dssp HHHHHHHHHHHCHHHHHHHHH
T ss_pred hhhHHHHHHHHccccHHHHHH
Confidence 889999999999999999864
No 2
>d2e74e1 f.23.24.1 (E:1-32) PetL subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=21.41 E-value=19 Score=20.69 Aligned_cols=20 Identities=25% Similarity=0.773 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHH-hhheee
Q 035538 103 ISVLLFAAFIALSI-LTIGVV 122 (171)
Q Consensus 103 is~LlfvAfvgLsi-lTiGVi 122 (171)
..+.|.+.|++|.. +.+|+|
T Consensus 3 lgavfyivfialffgiavgii 23 (32)
T d2e74e1 3 LGAVFYIVFIALFFGIAVGII 23 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred eeeeHHHHHHHHHHHHHhhhe
Confidence 45566677776643 334444
No 3
>d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]}
Probab=18.89 E-value=22 Score=23.95 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=19.6
Q ss_pred HHHHhhheeeeeehhhhhhhHHHHHHHHH
Q 035538 113 ALSILTIGVVYIGVTDFLQKREREKFEKE 141 (171)
Q Consensus 113 gLsilTiGViYL~VtdFlqKRe~EkfeKe 141 (171)
++.++.+.++++.+.-++.+|-++..++.
T Consensus 164 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~ 192 (323)
T d2hyda2 164 TLAALFIFPFYILTVYVFFGRLRKLTRER 192 (323)
T ss_dssp HHHHTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhcccccchhHHH
Confidence 45555566677788888888776665554
No 4
>d1rh1a2 f.1.1.1 (A:313-511) Colicin B C-terminal domain {Escherichia coli [TaxId: 562]}
Probab=16.17 E-value=38 Score=25.93 Aligned_cols=44 Identities=16% Similarity=0.477 Sum_probs=26.6
Q ss_pred cchHHHHHHHHHHHHHHHHHhhheee---------ee-e-hhhhhhhHHHHHHHH
Q 035538 97 ESLSSVISVLLFAAFIALSILTIGVV---------YI-G-VTDFLQKREREKFEK 140 (171)
Q Consensus 97 ~g~a~vis~LlfvAfvgLsilTiGVi---------YL-~-VtdFlqKRe~EkfeK 140 (171)
.|.++.+.+++|-+.+|-.++.+|.. || | |+.|.+.-.-||..+
T Consensus 141 ~~~At~v~~~~fs~~~g~~~~~~g~~~t~vgi~giii~~~v~alIdd~~v~k~N~ 195 (199)
T d1rh1a2 141 SGMASAVALSLFSLTLGSALIAFGLSATVVGFVGVVIAGAIGAFIDDKFVDELNH 195 (199)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTCSHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHhCHHHHHHHHH
Confidence 45566677777777776655555542 33 3 677777666665544
No 5
>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=13.76 E-value=36 Score=26.24 Aligned_cols=11 Identities=45% Similarity=0.848 Sum_probs=9.5
Q ss_pred eeeehhhhhhh
Q 035538 122 VYIGVTDFLQK 132 (171)
Q Consensus 122 iYL~VtdFlqK 132 (171)
||++++|=|..
T Consensus 200 vYVs~~~~l~s 210 (232)
T d2b5ua2 200 VYVSVSDVLSP 210 (232)
T ss_dssp EEEEEEECCCH
T ss_pred EEEEecccCCH
Confidence 99999988875
No 6
>d1imla2 g.39.1.3 (A:29-76) Cysteine-rich (intestinal) protein, CRP, CRIP {Rat (Rattus rattus) [TaxId: 10117]}
Probab=12.39 E-value=31 Score=21.34 Aligned_cols=8 Identities=63% Similarity=1.510 Sum_probs=5.3
Q ss_pred CCCCCCCc
Q 035538 157 AGPRGFGQ 164 (171)
Q Consensus 157 aGprGFGq 164 (171)
=||||||-
T Consensus 32 FGPkG~g~ 39 (48)
T d1imla2 32 FGPKGFGR 39 (48)
T ss_dssp SSCCCSSC
T ss_pred cCCCcccc
Confidence 47777763
No 7
>d1cola_ f.1.1.1 (A:) Colicin A {Escherichia coli [TaxId: 562]}
Probab=11.88 E-value=58 Score=24.83 Aligned_cols=17 Identities=18% Similarity=0.427 Sum_probs=8.7
Q ss_pred cchHHHHHHHHHHHHHH
Q 035538 97 ESLSSVISVLLFAAFIA 113 (171)
Q Consensus 97 ~g~a~vis~LlfvAfvg 113 (171)
.|+++.+.+.+|-+++|
T Consensus 139 ~~~At~va~~~fs~~~~ 155 (197)
T d1cola_ 139 SGIASSVALGIFSATLG 155 (197)
T ss_dssp TTCCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH
Confidence 34555555555555444
No 8
>d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]}
Probab=11.17 E-value=56 Score=21.63 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=15.0
Q ss_pred HHHhhheeeeeehhhhhhhHHHHHHHHH
Q 035538 114 LSILTIGVVYIGVTDFLQKREREKFEKE 141 (171)
Q Consensus 114 LsilTiGViYL~VtdFlqKRe~EkfeKe 141 (171)
|.++.+-++++.+.-++.+|-++..++.
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~ 187 (319)
T d3b60a2 160 IILVVLAPIVSIAIRVVSKRFRSISKNM 187 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 3334444556666777777655444333
No 9
>d1b8ta4 g.39.1.3 (A:144-192) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=10.64 E-value=37 Score=20.86 Aligned_cols=7 Identities=71% Similarity=1.654 Sum_probs=4.6
Q ss_pred CCCCCCC
Q 035538 157 AGPRGFG 163 (171)
Q Consensus 157 aGprGFG 163 (171)
=||||||
T Consensus 31 fGPKG~g 37 (49)
T d1b8ta4 31 FGPKGFG 37 (49)
T ss_dssp TCCCCCC
T ss_pred cCCCccC
Confidence 4777765
No 10
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]}
Probab=10.00 E-value=51 Score=22.63 Aligned_cols=16 Identities=38% Similarity=0.378 Sum_probs=13.0
Q ss_pred heeeeeehhhhhhhHH
Q 035538 119 IGVVYIGVTDFLQKRE 134 (171)
Q Consensus 119 iGViYL~VtdFlqKRe 134 (171)
.|++-+|+|||.|++-
T Consensus 20 ~~~~~vGit~~a~~~l 35 (131)
T d1hpca_ 20 GSVATIGITDHAQDHL 35 (131)
T ss_dssp TTEEEEEECHHHHHHH
T ss_pred CCEEEEEECHHHHhhh
Confidence 4778899999998753
Done!