BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>035540
MLSLQHKLVVAQFLVTALVLTSINLITANGSVCYVKIYLTAKSPPQPNSELHLEIEKCTS
HCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQAR
HLNECG

High Scoring Gene Products

Symbol, full name Information P value
HBP1
AT1G17100 		protein from Arabidopsis thaliana 1.2e-08

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  035540
        (126 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2020307 - symbol:HBP1 "AT1G17100" species:3702...   132  1.2e-08   1


>TAIR|locus:2020307 [details] [associations]
            symbol:HBP1 "AT1G17100" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0005773 "vacuole" evidence=IDA]
            [GO:0005774 "vacuolar membrane" evidence=IDA] [GO:0019761
            "glucosinolate biosynthetic process" evidence=RCA] EMBL:CP002684
            GenomeReviews:CT485782_GR GO:GO:0005774 EMBL:AC007651
            eggNOG:NOG86107 InterPro:IPR011256 InterPro:IPR006917
            PANTHER:PTHR11220 Pfam:PF04832 SUPFAM:SSF55136 HOGENOM:HOG000237638
            OMA:TVAQYNS EMBL:AY086962 EMBL:BT024615 IPI:IPI00517681 PIR:G86306
            RefSeq:NP_173153.1 UniGene:At.21016 UniGene:At.48199
            ProteinModelPortal:Q9SHG8 SMR:Q9SHG8 IntAct:Q9SHG8 STRING:Q9SHG8
            PaxDb:Q9SHG8 PRIDE:Q9SHG8 DNASU:838280 EnsemblPlants:AT1G17100.1
            GeneID:838280 KEGG:ath:AT1G17100 TAIR:At1g17100 InParanoid:Q9SHG8
            PhylomeDB:Q9SHG8 ProtClustDB:CLSN2681876 Genevestigator:Q9SHG8
            Uniprot:Q9SHG8
        Length = 232

 Score = 132 (51.5 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 37/120 (30%), Positives = 63/120 (52%)

Query:    15 VTALVLTSINLITANGSVCY----VKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSR 70
             +TA V++ ++   ++G  C     V  Y+  K+ P P    +L I+K  S  +AVR+FS 
Sbjct:   107 MTAPVISQVS--PSDGPFCESSFTVSFYVPKKNQPDPAPSENLHIQKWNSRYVAVRQFSG 164

Query:    71 FFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKK------KSYTIAQYNSSYHQARHLNE 124
             F  DD++ ++   L +SL      N +I + K+        +YT+AQYNS +  +  +NE
Sbjct:   165 FVSDDSIGEQAAALDSSLKGTAWAN-AIAKSKEDGGVGSDSAYTVAQYNSPFEFSGRVNE 223


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.131   0.375    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      126       126   0.00091  102 3  11 22  0.50    30
                                                     29  0.40    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  553 (59 KB)
  Total size of DFA:  124 KB (2080 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  16.10u 0.18s 16.28t   Elapsed:  00:00:00
  Total cpu time:  16.10u 0.18s 16.28t   Elapsed:  00:00:00
  Start:  Thu May  9 20:32:59 2013   End:  Thu May  9 20:32:59 2013

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