BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 035540
(126 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2PA8|D Chain D, X-Ray Crystal Structure Of The DL SUBCOMPLEX OF THE
SULFOLOBUS Solfataricus Rna Polymerase
pdb|2PMZ|D Chain D, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|2PMZ|S Chain S, Archaeal Rna Polymerase From Sulfolobus Solfataricus
pdb|3HKZ|D Chain D, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
pdb|3HKZ|O Chain O, The X-Ray Crystal Structure Of Rna Polymerase From Archaea
Length = 265
Score = 26.9 bits (58), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 27 TANGSVCYVKIYLTAKSPPQPN 48
T N CY KIY+ A++P +P
Sbjct: 86 TENCEKCYTKIYIEAEAPNEPR 107
>pdb|1ZI7|A Chain A, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|B Chain B, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
pdb|1ZI7|C Chain C, Structure Of Truncated Yeast Oxysterol Binding Protein
Osh4
Length = 406
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 69 SRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLN 123
+R +KD +K+ E + +++ + G++ I++ KK+ + Y+++ A HLN
Sbjct: 220 ARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLF-YDAARIPAEHLN 273
>pdb|3SPW|A Chain A, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
pdb|3SPW|B Chain B, Structure Of Osh4pKES1P IN COMPLEX WITH
PHOSPHATIDYLINOSITOL 4- Phosphate
Length = 436
Score = 26.6 bits (57), Expect = 4.0, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 69 SRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLN 123
+R +KD +K+ E + +++ + G++ I++ KK+ + Y+++ A HLN
Sbjct: 250 ARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLF-YDAARIPAEHLN 303
>pdb|1ZHT|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 7-Hydroxycholesterol
pdb|1ZHW|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 20-hydroxycholesterol
pdb|1ZHX|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With 25-Hydroxycholesterol
pdb|1ZHY|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Cholesterol
pdb|1ZHZ|A Chain A, Structure Of Yeast Oxysterol Binding Protein Osh4 In
Complex With Ergosterol
Length = 438
Score = 26.6 bits (57), Expect = 4.3, Method: Composition-based stats.
Identities = 14/55 (25%), Positives = 32/55 (58%), Gaps = 1/55 (1%)
Query: 69 SRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLN 123
+R +KD +K+ E + +++ + G++ I++ KK+ + Y+++ A HLN
Sbjct: 252 ARIYKDSKDSKDKEKALYTISGQWSGSSKIIKANKKEESRLF-YDAARIPAEHLN 305
>pdb|2A2O|A Chain A, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|B Chain B, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|C Chain C, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|D Chain D, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|E Chain E, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|F Chain F, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2O|G Chain G, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 2.16 A Resolution
pdb|2A2M|A Chain A, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.88 A Resolution
pdb|2A2M|B Chain B, Crystal Structure Of A Putativetena Family Transcriptional
Regulator (Bt_3146) From Bacteroides Thetaiotaomicron
Vpi-5482 At 1.88 A Resolution
Length = 258
Score = 26.2 bits (56), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 2/23 (8%)
Query: 103 KKKSYTIAQYNSSYHQARHLNEC 125
K KSY +YN +YHQ HL E
Sbjct: 121 KAKSYD--EYNETYHQTWHLREA 141
>pdb|2AZE|A Chain A, Structure Of The Rb C-Terminal Domain Bound To An E2f1-Dp1
Heterodimer
Length = 155
Score = 25.4 bits (54), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Query: 41 AKSPPQPNSELHLEI------EKCTSHC-IAVRKFSRFFKDDN---VNKEVEVL 84
A PP PNS +HL +K C I+ KF F DN ++ ++EVL
Sbjct: 52 ASRPPPPNSVIHLPFIIVNTSKKTVIDCSISNDKFEYLFNFDNTFEIHDDIEVL 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.131 0.375
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,308,926
Number of Sequences: 62578
Number of extensions: 112890
Number of successful extensions: 223
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 221
Number of HSP's gapped (non-prelim): 10
length of query: 126
length of database: 14,973,337
effective HSP length: 87
effective length of query: 39
effective length of database: 9,529,051
effective search space: 371632989
effective search space used: 371632989
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)