Query 035540
Match_columns 126
No_of_seqs 111 out of 366
Neff 6.4
Searched_HMMs 46136
Date Fri Mar 29 03:51:59 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035540.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/035540hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF04832 SOUL: SOUL heme-bindi 100.0 2E-36 4.2E-41 225.6 9.7 114 3-126 51-172 (176)
2 PRK10016 DNA gyrase inhibitor; 93.2 0.51 1.1E-05 33.8 6.9 54 52-115 2-55 (156)
3 COG3449 DNA gyrase inhibitor [ 91.9 0.86 1.9E-05 33.9 6.6 56 52-116 2-57 (154)
4 PF06445 GyrI-like: GyrI-like 88.4 0.91 2E-05 30.7 4.1 58 52-116 2-60 (155)
5 PRK10016 DNA gyrase inhibitor; 86.3 8.9 0.00019 27.2 8.5 60 32-94 64-124 (156)
6 smart00871 AraC_E_bind Bacteri 85.3 5.7 0.00012 26.8 6.8 59 53-116 2-60 (158)
7 PF06445 GyrI-like: GyrI-like 84.6 9.8 0.00021 25.5 7.8 40 52-93 84-124 (155)
8 COG3449 DNA gyrase inhibitor [ 82.8 2.4 5.2E-05 31.5 4.2 71 32-115 65-136 (154)
9 smart00871 AraC_E_bind Bacteri 73.9 22 0.00048 23.8 6.8 41 52-93 84-124 (158)
10 COG4978 Transcriptional regula 57.3 50 0.0011 24.2 6.2 43 50-94 79-121 (153)
11 COG4978 Transcriptional regula 48.0 53 0.0012 24.1 5.0 40 52-92 4-43 (153)
12 PF14657 Integrase_AP2: AP2-li 34.0 51 0.0011 18.8 2.5 31 59-90 13-43 (46)
13 PF07157 DNA_circ_N: DNA circu 30.5 47 0.001 22.5 2.2 39 53-92 39-77 (93)
14 PF11964 SpoIIAA-like: SpoIIAA 26.5 73 0.0016 20.7 2.6 29 64-92 3-31 (109)
15 COG2345 Predicted transcriptio 24.9 1.5E+02 0.0032 23.2 4.4 43 74-118 127-169 (218)
16 PTZ00195 60S ribosomal protein 23.7 57 0.0012 25.2 1.8 23 52-74 96-118 (198)
17 PF05036 SPOR: Sporulation rel 23.0 99 0.0021 18.4 2.6 31 55-85 35-65 (76)
18 KOG1714 60s ribosomal protein 22.7 70 0.0015 24.5 2.1 25 52-76 89-113 (188)
19 PF14526 Cass2: Integron-assoc 22.4 77 0.0017 21.7 2.2 39 54-92 1-39 (150)
20 PF06547 DUF1117: Protein of u 22.3 92 0.002 22.0 2.5 21 52-72 3-23 (117)
21 PF08312 cwf21: cwf21 domain; 21.5 92 0.002 18.3 2.0 20 70-90 24-43 (46)
22 PF01187 MIF: Macrophage migra 21.0 2.1E+02 0.0046 19.3 4.2 48 59-115 55-102 (114)
23 PHA02097 hypothetical protein 20.6 1.4E+02 0.0031 18.3 2.8 29 9-38 10-40 (59)
24 KOG1386 Nucleoside phosphatase 20.1 2.1E+02 0.0046 25.2 4.7 62 30-91 171-235 (501)
No 1
>PF04832 SOUL: SOUL heme-binding protein; InterPro: IPR006917 This family represents a group of putative haem-binding proteins []. It includes archaeal and bacterial homologues.; PDB: 2HVA_A 2GOV_A 4A1M_A 3R85_E 2YC9_A 3R8K_B 3R8J_B.
Probab=100.00 E-value=2e-36 Score=225.63 Aligned_cols=114 Identities=23% Similarity=0.349 Sum_probs=86.2
Q ss_pred ccccCCCCceeceecceeEEEeecC---CCCceEEEEEEec---C-CCCCCCCCCCCEEEEEeCCeEEEEEeecCccCch
Q 035540 3 SLQHKLVVAQFLVTALVLTSINLIT---ANGSVCYVKIYLT---A-KSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDD 75 (126)
Q Consensus 3 ~~G~N~~~~kI~MTaPV~~~~~~p~---~~~~~~tmsF~lP---~-~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~ 75 (126)
++|+|+++++|+||+||++++. +. .+.+.|+|+|||| | ++||.|+ |++|+|+++|++++||++||||+++.
T Consensus 51 i~G~N~~~~ki~mT~PV~~~~~-~~~~~~~~~~~t~~f~lP~~~~~~~~P~P~-d~~V~i~~~p~~~~~v~~F~G~~~~~ 128 (176)
T PF04832_consen 51 IFGKNSAGEKIAMTAPVLTQVI-PMTAESCEKEYTMSFFLPSEYQAENPPKPT-DPDVFIEEVPERTVYVRRFSGFATDE 128 (176)
T ss_dssp HCT-CTT------BS-EEEEEE-ETTTTTCECEEEEEEE--HHHC-TS---BS-STTEEEEEC-SEEEEEEEECS--SHH
T ss_pred HhcCCcccceeeccCCEEEEEE-cCCCcccCCcEEEEEEcCcccccccCCCCC-CCeEEEEEecCcEEEEEEECCcCCHH
Confidence 5899999999999999999984 32 2567899999999 6 8999998 78999999999999999999999999
Q ss_pred hHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCC-CCcccCCC
Q 035540 76 NVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQ-ARHLNECG 126 (126)
Q Consensus 76 ~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l-~~RrNEV~ 126 (126)
++.+++++|+++|.++|+. +.+.+++|+||+||++ ++|||||.
T Consensus 129 ~~~~~~~~L~~~L~~~g~~--------~~~~~~~a~Yd~P~~~~~~R~NEV~ 172 (176)
T PF04832_consen 129 KIQEEAKKLRAALKKDGLK--------DKGYYYVAGYDPPFTPPFNRRNEVW 172 (176)
T ss_dssp HHHHHHHHHHHHCCCTTHH--------CCCEEEEEESSSS-SSSSSSCEEEE
T ss_pred HHHHHHHHHHHHHHHcCCC--------cCCCeEEEEcCCCCCCccCcceEEE
Confidence 9999999999999998863 1378999999999876 99999983
No 2
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=93.20 E-value=0.51 Score=33.78 Aligned_cols=54 Identities=20% Similarity=0.255 Sum_probs=43.1
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSS 115 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P 115 (126)
+|+|+++|+.++|..|.-|-..+ .+.+-..+|.+++.++|+.. +.++.-.||.|
T Consensus 2 ~v~i~~~~~~~va~ir~~g~~~~-~~~~~~~~L~~~~~~~~l~~---------~~~~~i~~D~p 55 (156)
T PRK10016 2 NYEIKQEQKRTIAGFHLVGPWEQ-TVKQGFEQLMMWVDSHNIVP---------KEWVAVYYDNP 55 (156)
T ss_pred ceEEEEccCceEEEEEeecCchh-HHHHHHHHHHHHHHHcCCCC---------CcEEEEECCCC
Confidence 58999999999999999997643 47788899999999986521 22566788888
No 3
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=91.85 E-value=0.86 Score=33.85 Aligned_cols=56 Identities=9% Similarity=-0.040 Sum_probs=45.2
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY 116 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~ 116 (126)
+|.|+++|+..||..+=-| ....+.+-.++|.+|..++|+-.. ++..+--.||+|=
T Consensus 2 dv~I~e~p~~~VA~~rh~G--~~~~~~~~~~~l~~W~~~~~l~p~-------~S~~~gI~~ddP~ 57 (154)
T COG3449 2 DVEIIELPPIPVAYLRHVG--DPATLKQTFEQLIAWRRENGLLPE-------QSETLGIYQDDPD 57 (154)
T ss_pred CceEEecCCceEEEEEeeC--cHHHHHHHHHHHHHHHHHcCCCCC-------CceEEEEecCCCC
Confidence 6999999999999999999 788999999999999999876331 1444445667665
No 4
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=88.37 E-value=0.91 Score=30.74 Aligned_cols=58 Identities=12% Similarity=0.110 Sum_probs=44.7
Q ss_pred CEEEEEeCCeEEEEEeecCccCchh-HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDN-VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY 116 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~-~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~ 116 (126)
+|+|+++|+++++..+..|-..+.. +.+..++|.+++...+... . ...++...||.|-
T Consensus 2 ~~~i~~~p~~~v~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~----~---~~~~~~i~~~~~~ 60 (155)
T PF06445_consen 2 EVEIVTLPAFRVAGIRRKGPYEEEDSIPELWQRLMSWLKEIGLST----D---PGPIIGIYYDNPN 60 (155)
T ss_dssp CEEEEEEEEEEEEEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHCC----S---SSSEEEEEEECCT
T ss_pred CcEEEEECCEEEEEEEEEECCchhhhHHHHHHHHHHHHHHhhccc----C---CCcceeEEecccc
Confidence 5899999999999999999888877 8999999999999865421 1 1444555666653
No 5
>PRK10016 DNA gyrase inhibitor; Provisional
Probab=86.34 E-value=8.9 Score=27.25 Aligned_cols=60 Identities=13% Similarity=0.005 Sum_probs=43.3
Q ss_pred eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHH-HHHHhhcCcCC
Q 035540 32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEV-LMNSLNLHFMG 94 (126)
Q Consensus 32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~-L~~~L~~~~~~ 94 (126)
.+-+..-+|.+....+. +..+.+.++|+.++||..+-|- -+.+..-... +.+||..+|+.
T Consensus 64 R~d~~i~v~~~~~~~~~-~~~~~~~~ip~g~yAv~~~~G~--~~~l~~~~~~i~~~Wl~~sgy~ 124 (156)
T PRK10016 64 RCDTVVTVPDDFVLPEN-SEGVILTEIPGGQYAVAVARVV--DDDFAKPWYQFFNSLLQDSAYQ 124 (156)
T ss_pred eeeEEEEeCCCcccCCC-CCCeEEEEECCCcEEEEEEECC--HHHHHHHHHHHHHHhchhcCCc
Confidence 37788889943322222 2369999999999999999995 4456665655 78999988763
No 6
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=85.26 E-value=5.7 Score=26.79 Aligned_cols=59 Identities=7% Similarity=-0.021 Sum_probs=41.9
Q ss_pred EEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCC
Q 035540 53 LEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSY 116 (126)
Q Consensus 53 V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~ 116 (126)
++|+++|+.+++..++.|-..+..+.+..++|.+++...+..... . .+..+...|+.|.
T Consensus 2 ~~i~~~~~~~v~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~~ 60 (158)
T smart00871 2 VRIVELPAFKVAGLRHRGPYEEEKIPELWQRLIAWAKELGLLPIG--P---SGPPYGVYYDDPD 60 (158)
T ss_pred CEEEEcCCceEEEEEeecCcccccHHHHHHHHHHHHHHcCCCCCC--C---CccEEEEECCCCC
Confidence 688999999999999999988656788888888888776542210 0 1344555666654
No 7
>PF06445 GyrI-like: GyrI-like small molecule binding domain; InterPro: IPR010499 This domain is found in the probable effector binding domain of a number of different bacterial transcription activators [] and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.; PDB: 1JYH_A 1D5Y_B 3B49_A 3E0H_A 2KCU_A 3LUR_B 1EXI_A 3Q3D_A 1EXJ_A 3Q5S_A ....
Probab=84.57 E-value=9.8 Score=25.50 Aligned_cols=40 Identities=18% Similarity=0.098 Sum_probs=36.5
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHH-HhhcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMN-SLNLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~-~L~~~~~ 93 (126)
.+....+|+.++|+..|.|-. +.+.+-...|.. ||.++|+
T Consensus 84 ~~~~~~ip~g~ya~~~~~G~~--~~l~~~~~~l~~~~l~~~g~ 124 (155)
T PF06445_consen 84 GMESRTIPAGKYAVFEHKGPY--DDLQEAYQKLYNEWLPESGY 124 (155)
T ss_dssp TSEEEEEECEEEEEEEEESCG--HGHHHHHHHHHHCHHHHCTC
T ss_pred eEEEEEEcCcEEEEEEEEccH--HHHHHHHHHHHhhhHHHCCC
Confidence 689999999999999999977 788888999999 9999876
No 8
>COG3449 DNA gyrase inhibitor [DNA replication, recombination, and repair]
Probab=82.76 E-value=2.4 Score=31.48 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=44.9
Q ss_pred eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHH-HHHHHHHhhcCcCCCcceecccCCCceEEE
Q 035540 32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKE-VEVLMNSLNLHFMGNTSILEDKKKKSYTIA 110 (126)
Q Consensus 32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~-~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A 110 (126)
.|-..-.+|+ +.+.++..|..-++|+.++||.+|.|-. +++.+- .....+||.++|.. . .+.+.+.
T Consensus 65 R~D~cv~v~~---~~~~n~~~v~~~~i~GG~YAV~r~~~~~--d~~~~aw~~if~ewlp~Sg~~------~--~d~P~~e 131 (154)
T COG3449 65 RYDACVVVPE---PIPENSEGVQLGEIPGGLYAVARFRGTA--DDLAKAWGYIFGEWLPASGYE------P--RDRPILE 131 (154)
T ss_pred eeeEEEEcCC---ccCCCCCceeEeeecCCceEEEEEeccH--HHHHHHHHHHHhhhccccCcc------c--CCCchHH
Confidence 4455555552 3333355799999999999999999965 334443 34556777776532 2 2566666
Q ss_pred eeCCC
Q 035540 111 QYNSS 115 (126)
Q Consensus 111 ~Yn~P 115 (126)
+|=+.
T Consensus 132 ~y~n~ 136 (154)
T COG3449 132 RYLNF 136 (154)
T ss_pred HHhcc
Confidence 76433
No 9
>smart00871 AraC_E_bind Bacterial transcription activator, effector binding domain. This domain is found in the probable effector binding domain of a number of different bacterial transcription activators PUBMED:10802742 and is also present in some DNA gyrase inhibitors. The absence of a HTH motif in the DNA gyrase inhibitors is thought to indicate the fact that these do not bind DNA.
Probab=73.86 E-value=22 Score=23.78 Aligned_cols=41 Identities=12% Similarity=-0.010 Sum_probs=34.2
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~ 93 (126)
.+.+..+|++.+++.+|.| ...+.+.+-..+|..++..++.
T Consensus 84 ~~~~~~~p~~~y~~~~~~g-~~~~~~~~~~~~l~~~~~~~~~ 124 (158)
T smart00871 84 GVETKEIPAGKYAVFTHKG-GSYDEIQETWEAIYGEWLPNSG 124 (158)
T ss_pred CceEEEECCCcEEEEEEcC-CCHHHHHHHHHHHHHhhcccCC
Confidence 6889999999999999999 3466788888999988877653
No 10
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=57.31 E-value=50 Score=24.21 Aligned_cols=43 Identities=9% Similarity=0.146 Sum_probs=37.0
Q ss_pred CCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCC
Q 035540 50 ELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMG 94 (126)
Q Consensus 50 ~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~ 94 (126)
+.++++.++|..++|...|+|-.. .+..--++|..++.++|..
T Consensus 79 ~~~~~~~~~P~g~~a~~~~~G~~~--~~~~~y~rli~~iee~g~~ 121 (153)
T COG4978 79 DIDIKIKTLPKGKYACIIHKGSYE--EVEQAYKRLIEYIEENGLE 121 (153)
T ss_pred CCcceeEEccCceEEEEEEEcCcc--cHHHHHHHHHHHHHHhCCc
Confidence 568999999999999999999664 5778889999999998763
No 11
>COG4978 Transcriptional regulator, effector-binding domain/component [Transcription / Signal transduction mechanisms]
Probab=48.02 E-value=53 Score=24.07 Aligned_cols=40 Identities=15% Similarity=0.114 Sum_probs=36.5
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
.+.+.++++++++..++-|- .+..+.+-..+|.+.|+..|
T Consensus 4 e~~~~~~~~~~v~~ir~~~~-~~~~~~~~~~el~~~~~~~~ 43 (153)
T COG4978 4 EVVIKKLEEIKVVGIRFTGI-PERLIEQVYSELCNFLKSNG 43 (153)
T ss_pred ccEEEeecceeEEEEEEecC-cHHHHHHHHHHHHHHHhhcC
Confidence 68899999999999999998 88889999999999999876
No 12
>PF14657 Integrase_AP2: AP2-like DNA-binding integrase domain
Probab=33.99 E-value=51 Score=18.82 Aligned_cols=31 Identities=16% Similarity=0.128 Sum_probs=24.5
Q ss_pred CCeEEEEEeecCccCchhHHHHHHHHHHHhhc
Q 035540 59 TSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNL 90 (126)
Q Consensus 59 p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~ 90 (126)
-+...-..+ +||.+..++.+.+.++...|..
T Consensus 13 ~Gkrk~~~k-~GF~TkkeA~~~~~~~~~~~~~ 43 (46)
T PF14657_consen 13 TGKRKQKTK-RGFKTKKEAEKALAKIEAELEN 43 (46)
T ss_pred CCCEEEEEc-CCCCcHHHHHHHHHHHHHHHHc
Confidence 344455544 9999999999999999998876
No 13
>PF07157 DNA_circ_N: DNA circularisation protein N-terminus; InterPro: IPR009826 This entry represents the N terminus (approximately 100 residues) of a number of phage DNA circulation proteins.
Probab=30.48 E-value=47 Score=22.52 Aligned_cols=39 Identities=15% Similarity=0.170 Sum_probs=29.1
Q ss_pred EEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 53 LEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 53 V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
..+++.- +..-..++.||.-.+++..+.++|.++|+..|
T Consensus 39 ~~vEDlG-~~~r~~~~~a~~~G~dy~~~~~~L~~al~~~G 77 (93)
T PF07157_consen 39 PWVEDLG-RKARRIRVTAFFVGDDYEAQRDALIAALEAPG 77 (93)
T ss_pred cCeeecC-CCCcEEEEEEEEECCcHHHHHHHHHHHHcCCC
Confidence 4445442 33334577888889999999999999999865
No 14
>PF11964 SpoIIAA-like: SpoIIAA-like; InterPro: IPR021866 This family of proteins is functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 120 to 132 amino acids in length. This protein has a single completely conserved residue A that may be functionally important. ; PDB: 2Q3L_B 2OOK_A 3BL4_A.
Probab=26.54 E-value=73 Score=20.66 Aligned_cols=29 Identities=10% Similarity=0.082 Sum_probs=22.8
Q ss_pred EEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 64 AVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 64 aV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
.+.+++|..+.+++++-...+.+.+..+|
T Consensus 3 l~v~~~g~~t~ed~~~~~~~~~~~~~~~~ 31 (109)
T PF11964_consen 3 LAVRVSGKLTEEDYKELLPALEELIADHG 31 (109)
T ss_dssp EEEEEEEEE-HHHHHHHHHHHHHHHTTSS
T ss_pred EEEEEeeeeCHHHHHHHHHHHHHHHhcCC
Confidence 45688999999999998888888887643
No 15
>COG2345 Predicted transcriptional regulator [Transcription]
Probab=24.87 E-value=1.5e+02 Score=23.19 Aligned_cols=43 Identities=14% Similarity=0.043 Sum_probs=32.7
Q ss_pred chhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCC
Q 035540 74 DDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQ 118 (126)
Q Consensus 74 ~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l 118 (126)
+.+..+.++.|.+.+.+.|+..-... .+.+.+.+..||=||--
T Consensus 127 ~~~~ee~~e~Lv~l~~~~gy~~e~~~--~~~~~~~l~e~nCPi~~ 169 (218)
T COG2345 127 DADLEEKVERLVELLSDLGYMPELRP--VDNGRVQLIEHNCPISA 169 (218)
T ss_pred CCCHHHHHHHHHHHHHhCCccccccc--cCCCceEEEecCCchHH
Confidence 57889999999999999887443211 22488999999999853
No 16
>PTZ00195 60S ribosomal protein L18; Provisional
Probab=23.71 E-value=57 Score=25.23 Aligned_cols=23 Identities=9% Similarity=0.277 Sum_probs=20.0
Q ss_pred CEEEEEeCCeEEEEEeecCccCc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKD 74 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~ 74 (126)
+.+|.++|..+|++.+||--|.+
T Consensus 96 d~rl~~vPkvtVaALrfS~tAr~ 118 (198)
T PTZ00195 96 DVRMARIPAMRVCALRFSKSARQ 118 (198)
T ss_pred CccccccCceEEEEEecCHHHHH
Confidence 68889999999999999986644
No 17
>PF05036 SPOR: Sporulation related domain; InterPro: IPR007730 This 70 residue domain is composed of two 35 residue repeats that are found in bacterial proteins involved in sporulation and cell division, such as FtsN, CwlM and RlpA. This repeat might be involved in binding peptidoglycan. FtsN is an essential cell division protein with a simple bitopic topology: a short N-terminal cytoplasmic segment fused to a large carboxy periplasmic domain through a single transmembrane domain. The repeats lie at the periplasmic C terminus, which has an RNP-like fold []. FtsN localises to the septum ring complex. The CwlM protein is a cell wall hydrolase, where the C-terminal region, including the repeats, determines substrate specificity []. RlpA is a rare lipoprotein A protein that may be important for cell division. Its N-terminal cysteine may be attached to thioglyceride and N-fatty acyl residues [].; PDB: 1X60_A 1UTA_A.
Probab=23.03 E-value=99 Score=18.39 Aligned_cols=31 Identities=6% Similarity=0.054 Sum_probs=24.4
Q ss_pred EEEeCCeEEEEEeecCccCchhHHHHHHHHH
Q 035540 55 IEKCTSHCIAVRKFSRFFKDDNVNKEVEVLM 85 (126)
Q Consensus 55 i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~ 85 (126)
.........|....|+|.+.+...+-..+|+
T Consensus 35 ~~~~~~~~~yrV~~G~f~~~~~A~~~~~~l~ 65 (76)
T PF05036_consen 35 VQVSKGGPWYRVRVGPFSSREEAEAALRKLK 65 (76)
T ss_dssp EEEEEETTCEEEEECCECTCCHHHHHHHHHH
T ss_pred EEEecCCceEEEEECCCCCHHHHHHHHHHHh
Confidence 4445666777778899999998888888888
No 18
>KOG1714 consensus 60s ribosomal protein L18 [Translation, ribosomal structure and biogenesis]
Probab=22.72 E-value=70 Score=24.47 Aligned_cols=25 Identities=12% Similarity=0.207 Sum_probs=21.0
Q ss_pred CEEEEEeCCeEEEEEeecCccCchh
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDN 76 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~ 76 (126)
++++.++|..+|++.+|+--+.+..
T Consensus 89 D~rv~~vPkl~v~al~~t~~ar~rI 113 (188)
T KOG1714|consen 89 DLRVQEVPKLKVAALRFTKGARARI 113 (188)
T ss_pred cceeeecccceeeeeecccchhhhh
Confidence 6899999999999999987665443
No 19
>PF14526 Cass2: Integron-associated effector binding protein; PDB: 3GK6_A.
Probab=22.45 E-value=77 Score=21.74 Aligned_cols=39 Identities=18% Similarity=0.089 Sum_probs=26.7
Q ss_pred EEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 54 EIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 54 ~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
+|+++|+.+|+-++..+-..+.....+...|.+.+.+++
T Consensus 1 ~iv~~~~~~vig~~~r~~~~~~~~~~~i~~lw~~~~~~~ 39 (150)
T PF14526_consen 1 EIVELPSFTVIGIRVRTPNYDEDSNKKIGELWQEFFKEG 39 (150)
T ss_dssp EEEEE--EEEEEEEEEE-HHHHHTT--HHHHHHHHHHHT
T ss_pred CcEEeCCEEEEEEEEEecChhhhhhhHHHHHHHHHHHhc
Confidence 588999999999999666555555678888888888765
No 20
>PF06547 DUF1117: Protein of unknown function (DUF1117); InterPro: IPR010543 This entry represents the C terminus of a number of hypothetical plant proteins.
Probab=22.27 E-value=92 Score=22.03 Aligned_cols=21 Identities=29% Similarity=0.142 Sum_probs=18.1
Q ss_pred CEEEEEeCCeEEEEEeecCcc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFF 72 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~ 72 (126)
-+.|-.+|..-+||-+|+|=.
T Consensus 3 GLTIWRLPGGGFAVGRF~Ggr 23 (117)
T PF06547_consen 3 GLTIWRLPGGGFAVGRFSGGR 23 (117)
T ss_pred ceEEEEcCCCceEEeeecCCC
Confidence 478899999999999998744
No 21
>PF08312 cwf21: cwf21 domain; InterPro: IPR013170 The cwf21 domain is found in proteins involved in mRNA splicing. Proteins containing this domain have been isolated as a subcomplex of the splicosome in Schizosaccharomyces pombe (Fission yeast) []. In yeast, this domain binds the protein Prp8p [], a large and highly conserved U5 snRNP protein which has been proposed as a protein cofactor at the spliceosomal catalytic centre []. The cwf21 domain is found in, amongst others, the small Cwc21p protein in yeast as well as in the much larger human ortholog SRm300 (serine/arginine repetitive matrix protein). ; PDB: 2E62_A.
Probab=21.47 E-value=92 Score=18.31 Aligned_cols=20 Identities=15% Similarity=0.376 Sum_probs=15.7
Q ss_pred CccCchhHHHHHHHHHHHhhc
Q 035540 70 RFFKDDNVNKEVEVLMNSLNL 90 (126)
Q Consensus 70 G~~~~~~~~~~~~~L~~~L~~ 90 (126)
|+ +++.+.++...+++.|.+
T Consensus 24 g~-~~eeIe~kv~~~R~~L~~ 43 (46)
T PF08312_consen 24 GY-SEEEIEEKVDELRKKLLE 43 (46)
T ss_dssp T---HHHHHHHHHHHHHHHHH
T ss_pred CC-CHHHHHHHHHHHHHHHHh
Confidence 66 788999999999998865
No 22
>PF01187 MIF: Macrophage migration inhibitory factor (MIF); InterPro: IPR001398 Macrophage migration inhibitory factor (MIF) is a key regulatory cytokine within innate and adaptive immune responses, capable of promoting and modulating the magnitude of the response []. MIF is released from T-cells and macrophages, and acts within the neuroendocrine system. MIF is capable of tautomerase activity, although its biological function has not been fully characterised. It is induced by glucocorticoid and is capable of overriding the anti-inflammatory actions of glucocorticoid []. MIF regulates cytokine secretion and the expression of receptors involved in the immune response. It can be taken up into target cells in order to interact with intracellular signalling molecules, inhibiting p53 function, and/or activating components of the mitogen-activated protein kinase and Jun-activation domain-binding protein-1 (Jab-1) []. MIF has been linked to various inflammatory diseases, such as rheumatoid arthritis and atherosclerosis []. The MIF homologue D-dopachrome tautomerase (4.1.1.84 from EC) is involved in detoxification through the conversion of dopaminechrome (and possibly norepinephrinechrome), the toxic quinine product of the neurotransmitter dopamine (and norepinephrine), to an indole derivative that can serve as a precursor to neuromelanin [, ].; PDB: 1UIZ_C 3FWT_A 1HFO_F 2WKB_D 3RF4_B 2OS5_A 3RF5_A 2XCZ_A 3FWU_A 3B64_A ....
Probab=21.03 E-value=2.1e+02 Score=19.26 Aligned_cols=48 Identities=6% Similarity=0.004 Sum_probs=32.7
Q ss_pred CCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCC
Q 035540 59 TSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSS 115 (126)
Q Consensus 59 p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P 115 (126)
|...+-+++.|+. +.+..++..++|.+.|.+. .++.. ...++..+|-|
T Consensus 55 P~a~v~l~sig~~-~~~~n~~~s~~i~~~l~~~---LgIp~-----~Riyi~f~d~~ 102 (114)
T PF01187_consen 55 PAAFVELKSIGGL-DPEQNKKYSAAITEFLEEE---LGIPP-----DRIYINFHDLP 102 (114)
T ss_dssp S-EEEEEEESSSS-SHHHHHHHHHHHHHHHHHH---HT--G-----GGEEEEEEEET
T ss_pred CEEEEEEEEccCC-CHHHHHHHHHHHHHHHHHH---hCCCc-----CceEEEEEECC
Confidence 4556667788887 8888899999999999874 23321 45667666644
No 23
>PHA02097 hypothetical protein
Probab=20.61 E-value=1.4e+02 Score=18.32 Aligned_cols=29 Identities=17% Similarity=0.076 Sum_probs=19.1
Q ss_pred CCceeceecc--eeEEEeecCCCCceEEEEEE
Q 035540 9 VVAQFLVTAL--VLTSINLITANGSVCYVKIY 38 (126)
Q Consensus 9 ~~~kI~MTaP--V~~~~~~p~~~~~~~tmsF~ 38 (126)
++...+|.+| |+.++. -+-..++|.|+|.
T Consensus 10 ~~vt~amntp~gv~iri~-~tf~~~~f~~~fi 40 (59)
T PHA02097 10 QVVTSAMNTPGGVIIRIA-HTFDVSNFKIQFI 40 (59)
T ss_pred ceEEEEeeCCCcEEEEEE-eEEeeccceEEEe
Confidence 4567789888 566553 1113567899998
No 24
>KOG1386 consensus Nucleoside phosphatase [Nucleotide transport and metabolism]
Probab=20.13 E-value=2.1e+02 Score=25.22 Aligned_cols=62 Identities=8% Similarity=0.137 Sum_probs=41.0
Q ss_pred CceEEEEEEec-CCCCCCCCCCCCEEEE--EeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcC
Q 035540 30 GSVCYVKIYLT-AKSPPQPNSELHLEIE--KCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLH 91 (126)
Q Consensus 30 ~~~~tmsF~lP-~~~pP~P~~~~~V~i~--~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~ 91 (126)
+..--|.|..| ++..-.+..-..+.+- +.=..++||.+|=||--++..++....|.+.|...
T Consensus 171 GAS~QItFe~~~~~e~~~~~~~~~i~~G~~~~~~Y~ly~~SfLgyG~N~A~~ry~~~Ll~~~~n~ 235 (501)
T KOG1386|consen 171 GASTQITFEPPNQQEEVPKENLQTINYGNDNLVKYRLYVHSFLGYGANEALDRYLAMLLEKLPNK 235 (501)
T ss_pred CceeEEEEecCccccccchhhhhheecCCCCceEEEEEEEeecccchhHHHHHHHHHHHHhcccc
Confidence 44568999998 3222212111234444 11237999999999999999999888888766553
Done!