Query 035540
Match_columns 126
No_of_seqs 111 out of 366
Neff 6.4
Searched_HMMs 29240
Date Mon Mar 25 05:47:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/035540.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/035540hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3r8j_A Heme-binding protein 2; 100.0 2.1E-38 7.2E-43 242.8 12.7 115 3-126 76-196 (212)
2 4b0y_A Heme-binding protein 2; 100.0 2.8E-38 9.7E-43 244.3 12.2 115 3-126 95-215 (227)
3 2gov_A P22HBP, heme-binding pr 100.0 9E-39 3.1E-43 241.8 7.8 115 3-126 71-191 (195)
4 1jyh_A DNA gyrase inhibitory p 95.7 0.069 2.4E-06 35.2 8.1 59 32-93 64-123 (157)
5 3e0h_A Uncharacterized protein 95.0 0.23 7.7E-06 34.0 9.1 74 31-117 67-141 (158)
6 1r8e_A Multidrug-efflux transp 86.7 4 0.00014 30.3 8.4 42 51-94 205-246 (278)
7 3b49_A LIN2189 protein; BIG 86 82.3 4.8 0.00016 29.0 6.9 42 52-93 24-71 (211)
8 3b49_A LIN2189 protein; BIG 86 81.0 7.1 0.00024 28.0 7.4 41 51-93 136-176 (211)
9 3e0h_A Uncharacterized protein 80.4 5.3 0.00018 26.8 6.3 42 52-93 8-51 (158)
10 1jyh_A DNA gyrase inhibitory p 72.5 16 0.00054 23.3 6.7 41 52-93 2-42 (157)
11 1d5y_A ROB transcription facto 62.7 17 0.0006 26.6 5.9 40 52-93 211-251 (292)
12 3lur_A Putative bacterial tran 59.1 37 0.0013 22.7 7.1 54 52-114 86-140 (158)
13 1r8e_A Multidrug-efflux transp 57.3 17 0.00059 26.8 5.0 41 51-93 122-164 (278)
14 2q3l_A Uncharacterized protein 51.0 27 0.00092 23.2 4.7 41 52-92 10-50 (126)
15 3gk6_A Integron cassette prote 49.3 61 0.0021 22.3 7.3 40 52-92 104-143 (170)
16 1d5y_A ROB transcription facto 49.0 63 0.0021 23.5 7.0 39 52-90 125-167 (292)
17 2ook_A Hypothetical protein; s 43.8 44 0.0015 22.2 4.9 39 52-90 10-48 (127)
18 4fu0_A D-alanine--D-alanine li 29.4 52 0.0018 25.3 3.8 33 60-93 3-36 (357)
19 1g1s_C PSGL-1 peptide, PSGL-1; 25.1 31 0.0011 17.4 1.2 13 38-50 12-24 (28)
20 2iz6_A Molybdenum cofactor car 20.2 1.2E+02 0.0042 21.4 4.1 31 61-93 14-46 (176)
No 1
>3r8j_A Heme-binding protein 2; HEBP family, SOUL protein, apoptosis; 1.60A {Homo sapiens} PDB: 3r8k_A 2yc9_A 4ayz_A 4ayz_B 3r85_E
Probab=100.00 E-value=2.1e-38 Score=242.76 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=104.3
Q ss_pred ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540 3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN 76 (126)
Q Consensus 3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~ 76 (126)
.+|+|..++||+||+||++++. |+. +.+.|+|+|||| |++||.|+ |++|+|+++|+++|||++||||+++.+
T Consensus 76 I~G~N~~~~kI~MTaPV~t~~~-p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~ 153 (212)
T 3r8j_A 76 IQGKNEKEMKIKMTAPVTSYVE-PGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQK 153 (212)
T ss_dssp HTTCBTTCCCCCCBSCEEEEEE-CTTSTTSCEEEEEEEECCHHHHSSCCCBS-STTEEEEEECCEEEEEEEESSCCCHHH
T ss_pred hhcCCCCCCccccccCEEEEEe-cCCCcccCceEEEEEEcChHHccCCCCCC-CCceEEEEeCCEEEEEEEeCCcCCHHH
Confidence 4899999999999999999987 654 467899999999 78999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540 77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG 126 (126)
Q Consensus 77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~ 126 (126)
+.+++++|+++|.++|+. +. .+.|++|+|||||++|+|||||.
T Consensus 154 ~~~~~~~L~~~L~~~g~~----~~---~~~y~~A~Yd~P~t~~~RrNEVw 196 (212)
T 3r8j_A 154 NQEQLLTLASILREDGKV----FD---EKVYYTAGYNSPVKLLNRNNEVW 196 (212)
T ss_dssp HHHHHHHHHHHHHHTTCC----BC---SSCEEEEESSSSSCCSSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCc----cC---CCcEEEEEeCCCCCcCCceeEEE
Confidence 999999999999998752 21 26789999999999999999984
No 2
>4b0y_A Heme-binding protein 2; apoptosis; 3.50A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=244.27 Aligned_cols=115 Identities=22% Similarity=0.232 Sum_probs=101.2
Q ss_pred ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540 3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN 76 (126)
Q Consensus 3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~ 76 (126)
.+|+|..++||+||+||++++. |+. +.+.|+|+|||| |++||.|+ |++|+|+++|+++|||++||||+++++
T Consensus 95 I~G~N~~~~kI~MTaPV~t~~~-p~~~~~~~~~~tvsF~lP~~~q~~pP~P~-D~~V~i~~~p~~~vaVr~FsG~~~~~~ 172 (227)
T 4b0y_A 95 IQGKNEKEMKIKMTAPVTSYVE-PGSGPFSESTITISLYIPSEQQFDPPRPL-ESDVFIEDRAEMTVFVRSFDGFSSAQK 172 (227)
T ss_dssp HHTCBTTCCCCCCBSCEEEEEE-CCC--CCCEEEEEEEECCGGGSSSCCCBS-SSSEEEEEECCEEEEEEEESSCCCHHH
T ss_pred hhcCCCCCCccccccCEEEEEe-cCCCcccCceEEEEEEcChhhccCCCCCC-CCceEEEEeCCEEEEEEEecCcCCHHH
Confidence 4799999999999999999987 654 467899999999 88999998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540 77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG 126 (126)
Q Consensus 77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~ 126 (126)
+.+++++|+++|.++|+. +. .+.|++|+|||||++|+|||||.
T Consensus 173 ~~~~~~~L~~~L~~~g~~----~~---~~~y~~A~Yd~P~t~~~RrNEVw 215 (227)
T 4b0y_A 173 NQEQLLTLASILREDGKV----FD---EKVYYTAGYNSPVKLLNRNNEVW 215 (227)
T ss_dssp HHHHHHHHHHHHHHHTCC----BC---SSCEEEEECC---CCCSSCEEEE
T ss_pred HHHHHHHHHHHHHhCCCc----cC---CCcEEEEEeCCCCCcCCceeEEE
Confidence 999999999999998752 21 26789999999999999999984
No 3
>2gov_A P22HBP, heme-binding protein 1; structural genomics, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; NMR {Mus musculus} SCOP: d.60.1.4 PDB: 4a1m_A 2hva_A
Probab=100.00 E-value=9e-39 Score=241.78 Aligned_cols=115 Identities=16% Similarity=0.100 Sum_probs=103.1
Q ss_pred ccccCCCCceeceecceeEEEeecCC---CCceEEEEEEec---CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchh
Q 035540 3 SLQHKLVVAQFLVTALVLTSINLITA---NGSVCYVKIYLT---AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDN 76 (126)
Q Consensus 3 ~~G~N~~~~kI~MTaPV~~~~~~p~~---~~~~~tmsF~lP---~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~ 76 (126)
.+|+|..++||+||+||++++. |+. +.+.|+|+|+|| |.+||+|+ |++|+|+++|++++||++||||+++.+
T Consensus 71 I~G~N~~~~kI~MTaPV~~~~~-p~~~~~~~~~~tvsF~lP~~~~~~pP~P~-d~~V~i~~~p~~~vav~~F~G~~~~~~ 148 (195)
T 2gov_A 71 VGGTNDKGVGMGMTVPVSFAVF-PNEDGSLQKKLKVWFRIPNQFQGSPPAPS-DESVKIEEREGITVYSTQFGGYAKEAD 148 (195)
T ss_dssp HHTCBTTCCCCCCCCCEEEEEE-ECTTSCEEEEEEEEECCCHHHHHSCCCBC-SSSCEEEECCSCEEEEEEEESCCCHHH
T ss_pred hccCCCCCCCcccccCEEEEEc-CCCCCCcCceEEEEEEcchhcccCCCCCC-CCceEEEEeCCeEEEEEEECCccCHHH
Confidence 4799999999999999999876 653 346899999999 67899998 789999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCcCCCcceecccCCCceEEEeeCCCCCCCCcccCCC
Q 035540 77 VNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTIAQYNSSYHQARHLNECG 126 (126)
Q Consensus 77 ~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~P~~l~~RrNEV~ 126 (126)
+.+++++|+++|.++|+. +. .+.|++|+|||||++|+|||||.
T Consensus 149 ~~~~~~~L~~~L~~~g~~----~~---~~~~~~a~Yn~P~~~~~RrNEV~ 191 (195)
T 2gov_A 149 YVAHATQLRTTLEGTPAT----YQ---GDVYYCAGYDPPMKPYGRRNEVW 191 (195)
T ss_dssp HHHHHHHHHHHTTTSSCC----EE---EEEEEEEESSCCSSSSCCEEEEE
T ss_pred HHHHHHHHHHHHHHCCCc----cc---CCcEEEEEeCCCCCcCCceeEEE
Confidence 999999999999998752 21 26789999999999999999984
No 4
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=95.70 E-value=0.069 Score=35.22 Aligned_cols=59 Identities=14% Similarity=-0.010 Sum_probs=42.5
Q ss_pred eEEEEEEecCCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHH-HHhhcCcC
Q 035540 32 VCYVKIYLTAKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLM-NSLNLHFM 93 (126)
Q Consensus 32 ~~tmsF~lP~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~-~~L~~~~~ 93 (126)
.|.+.+.+|....++|. +..+.+.++|+.++||..|.|-. +.+.+-..+|. +||.++|+
T Consensus 64 ~~~~~~~v~~~~~~~~~-~~~~~~~~ip~g~ya~~~~~G~~--~~~~~~~~~l~~~wl~~~g~ 123 (157)
T 1jyh_A 64 RCDTVVTVPGYFTLPEN-SEGVILTEITGGQYAVAVARVVG--DDFAKPWYQFFNSLLQDSAY 123 (157)
T ss_dssp EEEEEEEECTTCCCCSS-CTTCEEEEECCEEEEEEEEEECS--SCCHHHHHHHHHHHTTCSSE
T ss_pred eEEEEEEecCccccCCC-CCCeEEEEeCCCcEEEEEEEeCH--HHHHHHHHHHHHHhhcccCC
Confidence 56777777733222132 34799999999999999999986 34667777775 99988764
No 5
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=95.03 E-value=0.23 Score=33.96 Aligned_cols=74 Identities=7% Similarity=-0.057 Sum_probs=50.5
Q ss_pred ceEEEEEEec-CCCCCCCCCCCCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCCCcceecccCCCceEE
Q 035540 31 SVCYVKIYLT-AKSPPQPNSELHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMGNTSILEDKKKKSYTI 109 (126)
Q Consensus 31 ~~~tmsF~lP-~~~pP~P~~~~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~~~~~~~~~~~~~~~~ 109 (126)
+.+.+.+-+| ....+ + +..|.+.++|+.++||.++.|-..+ +.+-..+|.+||.++|+... +..+-
T Consensus 67 ~~~~~~~~~~v~~~~~-~--~~~~~~~~ip~g~~a~~~~~G~~~~--i~~~~~~l~~wl~~~g~~~~--------~~~~E 133 (158)
T 3e0h_A 67 GTFEVEFGFPVEGGVE-G--SGRVVTGLTPSGKAASSLYIGPYGE--IEAVYDALMKWVDDNGFDLS--------GEAYE 133 (158)
T ss_dssp SCEEEEEEEECCSCCC-C--BTTBEEEECCCEEEEEEEEESCGGG--THHHHHHHHHHHHHTTCCEE--------EEEEE
T ss_pred cceEEEEEEEeCCCCC-C--CCceEEEEeCCEEEEEEEEEcCccc--HHHHHHHHHHHHHHCCCCcC--------CCEEE
Confidence 4455666666 22222 2 2379999999999999999997653 88888899999999876321 23333
Q ss_pred EeeCCCCC
Q 035540 110 AQYNSSYH 117 (126)
Q Consensus 110 A~Yn~P~~ 117 (126)
-.+|+|..
T Consensus 134 ~Y~~~p~~ 141 (158)
T 3e0h_A 134 IYLDNPAE 141 (158)
T ss_dssp EECSCTTS
T ss_pred EEeCCCCC
Confidence 34577764
No 6
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=86.74 E-value=4 Score=30.34 Aligned_cols=42 Identities=10% Similarity=0.026 Sum_probs=34.9
Q ss_pred CCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcCC
Q 035540 51 LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFMG 94 (126)
Q Consensus 51 ~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~~ 94 (126)
..|.+.++|+.++|+..+.|-. +++.+-...|.+||.++|+.
T Consensus 205 ~~~~~~~lp~g~ya~~~~~G~y--~~i~~~~~~l~~wl~~~g~~ 246 (278)
T 1r8e_A 205 PDMEITTIPKGRYACIAYNFSP--EHYFLNLQKLIKYIADRQLT 246 (278)
T ss_dssp TTSEEEEECSEEEEEEEEECCH--HHHHHHHHHHHHHHHHTTCC
T ss_pred CCceEeecCCceEEEEEEEcch--hhHHHHHHHHHHHHHHcCCc
Confidence 3689999999999999999955 45677778888999998763
No 7
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=82.34 E-value=4.8 Score=29.00 Aligned_cols=42 Identities=10% Similarity=-0.112 Sum_probs=35.6
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHh------hcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSL------NLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L------~~~~~ 93 (126)
+|.|+++|++.++.++..|-..+..+.+...+|..++ .+.|+
T Consensus 24 ~v~i~~~p~~~v~~i~~~g~~~~~~~~~~~~~L~~~~~~ik~~~~~~~ 71 (211)
T 3b49_A 24 KPERIFVPEMNFLMVDGKGDPDGEEYQKAVQSLYAIAYTIKMSKMGET 71 (211)
T ss_dssp SCEEEEEEEEEEEEEEEESCTTSHHHHHHHHHHHHHHHHHHHGGGSCC
T ss_pred CcEEEEECCeeEEEEEeecCCCHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 6999999999999999888655557888889999998 77765
No 8
>3b49_A LIN2189 protein; BIG 860.1, structural genomics, MCSG, SAD, PSI-2, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.60A {Listeria innocua CLIP11262}
Probab=80.97 E-value=7.1 Score=28.03 Aligned_cols=41 Identities=5% Similarity=-0.045 Sum_probs=35.1
Q ss_pred CCEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcC
Q 035540 51 LHLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFM 93 (126)
Q Consensus 51 ~~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~ 93 (126)
..|.+.++|+.++|+.++-|-.. ++.+-...|.+||.++|+
T Consensus 136 ~~v~~~~ip~g~~a~~~h~G~y~--~~~~~~~~l~~wl~~~g~ 176 (211)
T 3b49_A 136 SRVKLVRFEEGECVQMMHVGPFS--EEVHTVAEMHQFMETEGL 176 (211)
T ss_dssp TTCEEEEEEEEEEEEEEEESCGG--GHHHHHHHHHHHHHHHTC
T ss_pred ccceEEEeCCceEEEEEEEcchh--hHHHHHHHHHHHHHHCCC
Confidence 37999999999999999999765 466777888899999886
No 9
>3e0h_A Uncharacterized protein; chlorobium tepidum, structural genomics, PSI-2, protein structure initiative; 1.81A {Chlorobaculum tepidum} PDB: 2kcu_A
Probab=80.42 E-value=5.3 Score=26.81 Aligned_cols=42 Identities=5% Similarity=-0.064 Sum_probs=31.6
Q ss_pred CEEEEEeCCeEEEEEeecCccCc--hhHHHHHHHHHHHhhcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKD--DNVNKEVEVLMNSLNLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~--~~~~~~~~~L~~~L~~~~~ 93 (126)
+|+|+++|+.+||..+..|-..+ ..+.+-..+|.+++...++
T Consensus 8 ~v~I~~~p~~~va~ir~~~~~~~~~~~i~~~~~~l~~~~~~~~l 51 (158)
T 3e0h_A 8 VCELKELAPVPALLIRTQTTMSELGSLFEAGYHDILQLLAGQGK 51 (158)
T ss_dssp CEEEEEECCCEEEEEEEEECHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred ccEEEeeCCceEEEEEeecCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 69999999999999999987532 1233455678888887764
No 10
>1jyh_A DNA gyrase inhibitory protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; HET: DNA; 1.80A {Escherichia coli} SCOP: d.60.1.3
Probab=72.47 E-value=16 Score=23.27 Aligned_cols=41 Identities=20% Similarity=0.198 Sum_probs=30.9
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~~ 93 (126)
+++|+++|+.+++..+..|-.. +.+.+-..+|.+++...+.
T Consensus 2 ~~~i~~~~~~~v~~~~~~g~~~-~~i~~~~~~l~~~~~~~~~ 42 (157)
T 1jyh_A 2 NYEIKQEEKRTVAGFHLVGPWE-QTVKKGFEQLMMWVDSKNI 42 (157)
T ss_dssp CCEEEEECCEEEEEEEEESCHH-HHHHHHHHHHHHHHHHTTC
T ss_pred CCEEEEeCCeEEEEEEEECCch-hhHHHHHHHHHHHHHHcCC
Confidence 4789999999999888877542 3566667788888877654
No 11
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=62.66 E-value=17 Score=26.65 Aligned_cols=40 Identities=3% Similarity=-0.036 Sum_probs=34.2
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHH-HHhhcCcC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLM-NSLNLHFM 93 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~-~~L~~~~~ 93 (126)
.+...++|+.++||.++.|- .+.+.+-...|. +||.++|+
T Consensus 211 ~~~~~~iP~g~yAvf~~~G~--~~~l~~~~~~i~~~Wlp~sgy 251 (292)
T 1d5y_A 211 TGHPVMLQGGEYVMFTYEGL--GTGVQEFILTVYGTCMPMLNL 251 (292)
T ss_dssp TCEEEEECCEEEEEEEEEEE--GGGHHHHHHHHHHTHHHHTTC
T ss_pred cceEEEECCCcEEEEEecCC--HHHHHHHHHHHHHHhcccCCC
Confidence 58889999999999999993 567888888885 99998775
No 12
>3lur_A Putative bacterial transcription regulation prote; structural genomics, joint center for structural genomics; HET: MSE PG4; 1.81A {Staphylococcus aureus}
Probab=59.09 E-value=37 Score=22.71 Aligned_cols=54 Identities=9% Similarity=0.005 Sum_probs=37.4
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHH-HHHhhcCcCCCcceecccCCCceEEEeeCC
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVL-MNSLNLHFMGNTSILEDKKKKSYTIAQYNS 114 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L-~~~L~~~~~~~~~~~~~~~~~~~~~A~Yn~ 114 (126)
.+...++|+.++||.++.|-..+ .+.+-...| .+||-.+|.... ..+-+-.|..
T Consensus 86 ~~~~~~ip~g~Yavf~~~G~~~~-~i~~~~~~i~~~wlp~sgy~~~--------~~p~fE~Y~~ 140 (158)
T 3lur_A 86 KYDVITLASSKYMVFEAQGAVPK-AVQQKMEEVHHYIHQYQANTVK--------SAPFFELYQD 140 (158)
T ss_dssp GSEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHHHHCTTTBC--------SSCEEEEECS
T ss_pred CcEEEEECCceEEEEEEecChHH-HHHHHHHHHHHhhcccCCCeeC--------CCccEEEECC
Confidence 58889999999999999996544 455555554 468988765321 3455666755
No 13
>1r8e_A Multidrug-efflux transporter regulator; protein-DNA complex, MERR-family transcription activator, MU binding protein; HET: P4P; 2.40A {Bacillus subtilis} SCOP: a.6.1.3 d.60.1.1 PDB: 1exi_A* 1exj_A* 3iao_A 3q5p_A* 3d71_A* 3q3d_A* 3q1m_A* 3q2y_A* 3q5r_A* 3q5s_A* 3d70_A 3d6z_A* 3d6y_A* 1bow_A 2bow_A*
Probab=57.32 E-value=17 Score=26.76 Aligned_cols=41 Identities=12% Similarity=-0.151 Sum_probs=28.8
Q ss_pred CCEEEEEeCCeEEEEEee-cCccCchhH-HHHHHHHHHHhhcCcC
Q 035540 51 LHLEIEKCTSHCIAVRKF-SRFFKDDNV-NKEVEVLMNSLNLHFM 93 (126)
Q Consensus 51 ~~V~i~~~p~~~vaV~~F-sG~~~~~~~-~~~~~~L~~~L~~~~~ 93 (126)
.+|+|+++|+..++..+. .|-. ..+ ..-..+|.+++.+.+.
T Consensus 122 ~~v~I~~~p~~~v~~~~~~~~~~--~~i~~~~~~~l~~~~~~~~l 164 (278)
T 1r8e_A 122 GEVFVLDEEEIRIIQTEAEGIGP--ENVLNASYSKLKKFIESADG 164 (278)
T ss_dssp TCCEEEEECCEEEEEEECTTCCT--TTCCGGGGHHHHHHHHHHHS
T ss_pred CceEEEEcCCeEEEEeecCCCCh--HhHHHHHHHHHHHHHHHcCC
Confidence 369999999999999888 5532 223 3445567788877653
No 14
>2q3l_A Uncharacterized protein; SPOIIAA-like fold, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; HET: MSE; 2.25A {Shewanella loihica pv-4} SCOP: c.13.2.2
Probab=50.96 E-value=27 Score=23.21 Aligned_cols=41 Identities=12% Similarity=0.068 Sum_probs=34.5
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
-+.|....+..+...+.+|-.+.+++++-...|.+.|.+.+
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~~d~~~l~~~l~~~l~~~~ 50 (126)
T 2q3l_A 10 AIGIERSQDDFYLAFKAVGKLTHEDYEQMTPLLESALAGIK 50 (126)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHTTTCC
T ss_pred eEEEEEcCCCCEEEEEEEeeECHHHHHHHHHHHHHHHHhCC
Confidence 46777778888888899999999999998888888888753
No 15
>3gk6_A Integron cassette protein VCH_CASS2; novel, oyster PO HOLE, USA, structural genomics, PSI-2; HET: MSE PE4; 1.80A {Vibrio cholerae}
Probab=49.26 E-value=61 Score=22.25 Aligned_cols=40 Identities=10% Similarity=-0.126 Sum_probs=30.0
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhcCc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNLHF 92 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~~~ 92 (126)
.+...++|+.+.||.++.|-..+ .+.+-...+..||-.+|
T Consensus 104 g~~~~~IP~g~YAVF~~~G~~p~-~i~~~w~~I~~WlP~sg 143 (170)
T 3gk6_A 104 ESVKTKVSSGKYVTFSATGEMPQ-VVIDLWNEVWNYFASEH 143 (170)
T ss_dssp TCEEEEECCEEEEEEEEESSTTH-HHHHHHHHHHHHHC---
T ss_pred CcEEEEECCCCEEEEEecCCCHH-HHHHHHHHHHHhhhhcC
Confidence 58889999999999999995533 56777777777998876
No 16
>1d5y_A ROB transcription factor; protein-DNA complex, DNA, transcription/DNA complex; HET: DNA; 2.70A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 d.60.1.2
Probab=49.02 E-value=63 Score=23.53 Aligned_cols=39 Identities=3% Similarity=-0.175 Sum_probs=28.9
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHH----HHHHHHHHHhhc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVN----KEVEVLMNSLNL 90 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~----~~~~~L~~~L~~ 90 (126)
+++|+++|+.+++..+..|-..+..+. .....|.+.+..
T Consensus 125 ~~~I~~~~~~~v~gi~~~~~~~~~~~~~~~~~~i~~lw~~~~~ 167 (292)
T 1d5y_A 125 EHKFVTLEDTPLIGVTQSYSCSLEQISDFRHEMRYQFWHDFLG 167 (292)
T ss_dssp CEEEEEECCEEEEEEEEECCCCGGGHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEeCCeEEeeEEeeeccccccccccchhhhHHHHHHHhc
Confidence 699999999999999998866544443 445666666654
No 17
>2ook_A Hypothetical protein; structural genomics, JOIN for structural genomics, JCSG, protein structure initiative unknown function; HET: MSE; 1.80A {Shewanella frigidimarina} SCOP: c.13.2.2
Probab=43.83 E-value=44 Score=22.16 Aligned_cols=39 Identities=13% Similarity=0.081 Sum_probs=33.3
Q ss_pred CEEEEEeCCeEEEEEeecCccCchhHHHHHHHHHHHhhc
Q 035540 52 HLEIEKCTSHCIAVRKFSRFFKDDNVNKEVEVLMNSLNL 90 (126)
Q Consensus 52 ~V~i~~~p~~~vaV~~FsG~~~~~~~~~~~~~L~~~L~~ 90 (126)
-|.+....+..+...+.+|-.+.+++++-...|.+.|.+
T Consensus 10 mi~i~~~~~~~vl~v~~~G~lt~eD~~~l~~~i~~~l~~ 48 (127)
T 2ook_A 10 SIGINRIESVFFVTLKAIGTLTHEDYLVITPMLEGALSQ 48 (127)
T ss_dssp EEEEEEETTEEEEEEEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred eEEEEEcCCCCEEEEEEeeeECHHHHHHHHHHHHHHHhh
Confidence 366777778878888999999999999888888888988
No 18
>4fu0_A D-alanine--D-alanine ligase 7; vancomycin resistance, peptidoglycan synthesis, D-Ala:D-Ser ATP-grAsp domain; HET: ADP; 2.35A {Enterococcus faecalis}
Probab=29.39 E-value=52 Score=25.28 Aligned_cols=33 Identities=18% Similarity=0.222 Sum_probs=25.2
Q ss_pred CeEEEEEeecCccCchhHHHH-HHHHHHHhhcCcC
Q 035540 60 SHCIAVRKFSRFFKDDNVNKE-VEVLMNSLNLHFM 93 (126)
Q Consensus 60 ~~~vaV~~FsG~~~~~~~~~~-~~~L~~~L~~~~~ 93 (126)
.++|+|. |||..+|.++.-. .....++|++.|+
T Consensus 3 kkkv~vl-~GG~S~E~evSl~Sa~~v~~aL~~~gy 36 (357)
T 4fu0_A 3 NKKIAVI-FGGNSTEYEVSLQSASAVFENINTNKF 36 (357)
T ss_dssp CEEEEEE-EECSSTTHHHHHHHHHHHHHHSCTTTE
T ss_pred CCEEEEE-ECCCccchHHHHHHHHHHHHHHhHhCC
Confidence 3578885 9999999888644 5567788888764
No 19
>1g1s_C PSGL-1 peptide, PSGL-1; selectin, lectin, EGF, sulphated, SLEX, immune system, membr protein; HET: TYS SIA GAL NAG FUC NGA; 1.90A {Homo sapiens}
Probab=25.06 E-value=31 Score=17.37 Aligned_cols=13 Identities=31% Similarity=0.843 Sum_probs=9.7
Q ss_pred EecCCCCCCCCCC
Q 035540 38 YLTAKSPPQPNSE 50 (126)
Q Consensus 38 ~lP~~~pP~P~~~ 50 (126)
|||...||.|..+
T Consensus 12 flpetepp~~~~~ 24 (28)
T 1g1s_C 12 FLPETEPPRPMMD 24 (28)
T ss_pred ccccCCCCccccc
Confidence 6787788888654
No 20
>2iz6_A Molybdenum cofactor carrier protein; metal transport; 1.60A {Chlamydomonas reinhardtii} PDB: 2iz5_A 2iz7_A
Probab=20.19 E-value=1.2e+02 Score=21.39 Aligned_cols=31 Identities=16% Similarity=-0.019 Sum_probs=26.4
Q ss_pred eEEEEEeecCcc--CchhHHHHHHHHHHHhhcCcC
Q 035540 61 HCIAVRKFSRFF--KDDNVNKEVEVLMNSLNLHFM 93 (126)
Q Consensus 61 ~~vaV~~FsG~~--~~~~~~~~~~~L~~~L~~~~~ 93 (126)
..|+| |++-. .+....+.+.+|.+.|.+.|+
T Consensus 14 ~~VaV--~Gs~~~g~~~~~~~~A~~lg~~La~~g~ 46 (176)
T 2iz6_A 14 PIIGV--MGPGKADTAENQLVMANELGKQIATHGW 46 (176)
T ss_dssp CEEEE--ECCCGGGCCHHHHHHHHHHHHHHHHTTC
T ss_pred CeEEE--EeCCCCCCCHHHHHHHHHHHHHHHHCCC
Confidence 35666 88888 788899999999999999876
Done!